<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:49:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394242" ref_strand="+" ref_description="SGN-E394242 [TUS-14-E15]">
      <seq>aaaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagcggcggagggcgtatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="992" stop="2079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1292" g_stop="1779" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E394242" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1292" e_stop="1779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGC-TCTGA-CACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTT</genome_strand>
        <mrna_strand>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCGGCGGAGGGCGTATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202378" ref_strand="+" ref_description="SGN-E202378 [cLEC-6-H6]">
      <seq>aaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagctctgacacatatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctctttaccgtctttagagttcaagtctccagaaatttgatttgtgtccatgacagaattgattatataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="993" stop="2144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1293" g_stop="1844" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E202378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1293" e_stop="1844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAG</genome_strand>
        <mrna_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210078" ref_strand="+" ref_description="SGN-E210078 [cLEC-40-E24]">
      <seq>aaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagctctgacacatatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctctttaccgtctttagagttcaagtctccagaaatttgatttgtgtccatgacagaattgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="993" stop="2138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1293" g_stop="1838" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E210078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1293" e_stop="1838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTA</genome_strand>
        <mrna_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538936" ref_strand="+" ref_description="SGN-E538936 [TUS-58-H1](-)">
      <seq>gggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctggagacttgaactctaaagacggtaaagagagagggcaagtatcatctactcgtgttaggtatgcccttcacaagggagacatgaaatatgtgtcagagctattaggtcggaaccatcgtcttattttaatgatggaagaccaagaaaggtttactagtgagagaaataggctgtctgctccaaagtcttgtttgttgaatcttgcacctaaggaaggtctttatgagaattgttcagttttgattgacaagagtgttattccctgcagagtaatagttgatacaacatatattcatttggaatcctatgaggtagctagtttttcctgtgttacttctcaagacttaaagatattgggtattgactttggcagtccaaagttagaaggggttcaaattttgtaattcattcccgataatttgttagtgcaaccatttctgaatgtccttcagtgtttaagtatgagtatgattttttaagcggtacctttctgctaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="2489" stop="1005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2189" g_stop="2013" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1925" g_stop="1306" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="797" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="798" polyA_stop="814"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E538936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2189" e_stop="2013"/>
          <exon e_start="1925" e_stop="1306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</genome_strand>
        <mrna_strand>GGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538853" ref_strand="+" ref_description="SGN-E538853 [TUS-58-F1](-)">
      <seq>ccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctggagacttgaactctaaagacggtaaagagagagggcaagtatcatctactcgtgttaggtatgcccttcacaagggagacatgaaatatgtgtcagagctattaggtcggaaccatcgtcttattttaatgatggaagaccaagaaaggtttactagtgagagaaataggctgtctgctccaaagtcttgtttgttgaatcttgcacctaaggaaggtctttatgagaattgttcagttttgattgacaagagtgttattccctgcagagtaatagttgatacaacatatattcatttggaatcctatgaggtagctagtttttccctgtgttacttctcnaagacttaaagantattgggtattgactttggcagtccnaaagttaganaggggttcanaattttgtaattcattcccgantaatttgttagtgcaacccatttctgaatgtcccttcagtgntttaagtatgagtatgattttttaagcgngtacctttctgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="2493" stop="1005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2193" g_stop="2013" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1925" g_stop="1321" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="796" r_length="615" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="811" polyA_stop="820"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E538853" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2193" e_stop="2013"/>
          <exon e_start="1925" e_stop="1321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTT-CCTGTGTTACTTCTC-AAGACTTAAAGA-TATTGGGTATTGACTTTGGCAGTCC-AAAGTTAGA-AGGGGTTCA-AATTTTGTAATTCATTCCCGA-TAATTTGTTAGTGCAA-CCATTTCTGAATGT-CCTTCAGTG-TTTAAGTATGAGTATGATTTTTTAAGCG</genome_strand>
        <mrna_strand>CCAAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCCTGTGTTACTTCTCNAAGACTTAAAGANTATTGGGTATTGACTTTGGCAGTCCNAAAGTTAGANAGGGGTTCANAATTTTGTAATTCATTCCCGANTAATTTGTTAGTGCAACCCATTTCTGAATGTCCCTTCAGTGNTTTAAGTATGAGTATGATTTTTTAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538938" ref_strand="+" ref_description="SGN-E538938 [TUS-58-H1]">
      <seq>taggccgaatccatctcaattttcttttcttctgatgaaaattaagaatgttgagtgggtctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctggagacttgaactctaaagacggtaaagagagagggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6777" stop="1464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6477" g_stop="6201" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4342" g_stop="4290" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3202" g_stop="3067" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="466" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2013" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="642" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1925" g_stop="1764" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="804" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E538938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6477" e_stop="6201"/>
          <exon e_start="4342" e_stop="4290"/>
          <exon e_start="3202" e_stop="3067"/>
          <exon e_start="2188" e_stop="2013"/>
          <exon e_start="1925" e_stop="1764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGTATAACTTCTGTTGTCTCTTATGTTTTACGCTGCTGTCATAGAATGTTAAATAGAGAAATATTATCTCCTCGAAATACCAGAAAAGGACAGAAGGATGAACTTTGTCATGACTCGACTCTCACTGCTTCACCCAATCCTGTAATAGTACCTAGGATCAACTTTGAATTCTGAAAATACAAAAGGAAAGAGGATCATCACATCAGAGAGTTTTATCTTGCATTCTCTTAGTGTATGCAAGTCTTAACTTGTAGCAATATTCCACCCTAGCTCCTCTGATTTAGCATAACTCTATGGACCCGGTTGACACTCTTTCTCCAAAGCACTAGATAGTAACATTCTTGAGTTTAGGAATTTCTGTTAATAGGATGATCAATCAGAATATGTACAAAGAAGGAAGAAAATATATCCATATATTTTAGTTCATTTAAGTTTTAACGAAAAGCATAAAATAAAGAAATCAATCTCCACATCAGTATATTTTCCGACAGGAAAACTTAAGTTAATGTCCTCTATTCTTTTCTTCACTGCTTTTTGCGACAAGTGAAAGTTTGTGATGATTCCTTATAGCTTTTTGCTGTATCTTGTCCTTCATCTAAAATTCAAAGGATGTCCTTATCAACATGTTATACAATCTTGATTTGCTCCTTGGAAATAAAATATTTTCAAACGTTATTCTACTCAAGTAGTATATAGGATTAGTCATGGTTTAGAAAATTTGGTGTTTGAAGCTGGAAGGTGTTTACATCTGTTGAGTGTATCCTCCTAACCTTACTCAAGCTTACTGAGAAGTTCCTTTTTTGGTTAGTAGTCTTTATGAAATGCCATATCATGAAATGAGAAATAATATTTGTGAGCATGTGCATATTTTCAACCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAG</genome_strand>
        <mrna_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538856" ref_strand="+" ref_description="SGN-E538856 [TUS-58-F1]">
      <seq>taggccgaatccatctcaattttcttttcttctgatgaaaattaagaatgttgagtgggtctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6777" stop="1502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6477" g_stop="6201" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4342" g_stop="4290" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3202" g_stop="3067" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="466" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2013" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="642" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1925" g_stop="1802" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="766" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E538856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6477" e_stop="6201"/>
          <exon e_start="4342" e_stop="4290"/>
          <exon e_start="3202" e_stop="3067"/>
          <exon e_start="2188" e_stop="2013"/>
          <exon e_start="1925" e_stop="1802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGTATAACTTCTGTTGTCTCTTATGTTTTACGCTGCTGTCATAGAATGTTAAATAGAGAAATATTATCTCCTCGAAATACCAGAAAAGGACAGAAGGATGAACTTTGTCATGACTCGACTCTCACTGCTTCACCCAATCCTGTAATAGTACCTAGGATCAACTTTGAATTCTGAAAATACAAAAGGAAAGAGGATCATCACATCAGAGAGTTTTATCTTGCATTCTCTTAGTGTATGCAAGTCTTAACTTGTAGCAATATTCCACCCTAGCTCCTCTGATTTAGCATAACTCTATGGACCCGGTTGACACTCTTTCTCCAAAGCACTAGATAGTAACATTCTTGAGTTTAGGAATTTCTGTTAATAGGATGATCAATCAGAATATGTACAAAGAAGGAAGAAAATATATCCATATATTTTAGTTCATTTAAGTTTTAACGAAAAGCATAAAATAAAGAAATCAATCTCCACATCAGTATATTTTCCGACAGGAAAACTTAAGTTAATGTCCTCTATTCTTTTCTTCACTGCTTTTTGCGACAAGTGAAAGTTTGTGATGATTCCTTATAGCTTTTTGCTGTATCTTGTCCTTCATCTAAAATTCAAAGGATGTCCTTATCAACATGTTATACAATCTTGATTTGCTCCTTGGAAATAAAATATTTTCAAACGTTATTCTACTCAAGTAGTATATAGGATTAGTCATGGTTTAGAAAATTTGGTGTTTGAAGCTGGAAGGTGTTTACATCTGTTGAGTGTATCCTCCTAACCTTACTCAAGCTTACTGAGAAGTTCCTTTTTTGGTTAGTAGTCTTTATGAAATGCCATATCATGAAATGAGAAATAATATTTGTGAGCATGTGCATATTTTCAACCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGG</genome_strand>
        <mrna_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398108" ref_strand="-" ref_description="SGN-E398108 [TUS-14-E15](-)">
      <seq>actagttcctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattggggggggggggggggccatggaactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6724" stop="1826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6424" g_stop="6201" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4342" g_stop="4290" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="278" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3202" g_stop="3067" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="414" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2188" g_stop="2127" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="476" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E398108" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398108" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6424" e_stop="6201"/>
          <exon e_start="4342" e_stop="4290"/>
          <exon e_start="3202" e_stop="3067"/>
          <exon e_start="2188" e_stop="2127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGT-CTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGTATAACTTCTGTTGTCTCTTATGTTTTACGCTGCTGTCATAGAATGTTAAATAGAGAAATATTATCTCCTCGAAATACCAGAAAAGGACAGAAGGATGAACTTTGTCATGACTCGACTCTCACTGCTTCACCCAATCCTGTAATAGTACCTAGGATCAACTTTGAATTCTGAAAATACAAAAGGAAAGAGGATCATCACATCAGAGAGTTTTATCTTGCATTCTCTTAGTGTATGCAAGTCTTAACTTGTAGCAATATTCCACCCTAGCTCCTCTGATTTAGCATAACTCTATGGACCCGGTTGACACTCTTTCTCCAAAGCACTAGATAGTAACATTCTTGAGTTTAGGAATTTCTGTTAATAGGATGATCAATCAGAATATGTACAAAGAAGGAAGAAAATATATCCATATATTTTAGTTCATTTAAGTTTTAACGAAAAGCATAAAATAAAGAAATCAATCTCCACATCAGTATATTTTCCGACAGGAAAACTTAAGTTAATGTCCTCTATTCTTTTCTTCACTGCTTTTTGCGACAAGTGAAAGTTTGTGATGATTCCTTATAGCTTTTTGCTGTATCTTGTCCTTCATCTAAAATTCAAAGGATGTCCTTATCAACATGTTATACAATCTTGATTTGCTCCTTGGAAATAAAATATTTTCAAACGTTATTCTACTCAAGTAGTATATAGGATTAGTCATGGTTTAGAAAATTTGGTGTTTGAAGCTGGAAGGTGTTTACATCTGTTGAGTGTATCCTCCTAACCTTACTCAAGCTTACTGAGAAGTTCCTTTTTTGGTTAGTAGTCTTTATGAAATGCCATATCATGAAATGAGAAATAATATTTGTGAGCATGTGCATATTTTCAACCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCG</genome_strand>
        <mrna_strand>ACTAGTTCCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278841" ref_strand="+" ref_description="SGN-E278841 [cLER-2-D14]">
      <seq>aggccgaatccatctcaattttcttttcttctgatgaaaattaagaatgttgagtgggtctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="6776" stop="2766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6476" g_stop="6201" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4342" g_stop="4290" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="329" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3202" g_stop="3067" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="465" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E278841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6476" e_stop="6201"/>
          <exon e_start="4342" e_stop="4290"/>
          <exon e_start="3202" e_stop="3067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG</genome_strand>
        <mrna_strand>AGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543262" ref_strand="+" ref_description="SGN-E543262 [TUS-64-P20](-)">
      <seq>taaggaagttgcaaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgtaatccaatatcaaccattgcattcacagttgttgtgtggaaattcttctcgggaaggataccttacgaggagtttttcctcaagcagttctttggttctgactacgaagattatatgagaaaagttccttctggtattccacttgtgaggtgattatatcctcttcagtgctctatatattcatgcctaacgtcatctgctcatcggtgctgagataacactgtttatgaattttatcttcttagacactctttacagttttcataacatgaagttcgccagaaaaaggttcctcctagatataacttctgaggtgatgcttctattaacccttgtatagcgcgtttatcttatttgtatcatcatgttttcgtcgtatcatgtctttgttaagacttaggtaaactgttcttgtggggagctgtaagttataactgtatttgtatttatggcttgatgggacagtgtttttatcatactcttaaggagaagaaaggctttgtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="11174" stop="9901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10874" g_stop="10207" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="695"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E543262" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10874" e_stop="10207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</genome_strand>
        <mrna_strand>TAAGGAAGTTGCAAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548850" ref_strand="+" ref_description="SGN-E548850 [TUS-64-P24](-)">
      <seq>tcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatccggtctgttggtacacaaataatgctatgtaatccaatatcaacctttgcattcacagttgttgtgtggaaattcttctcgggaaggataccttacgaggagtttttcctcaagcagttctttggttctgactacgaagattatatgagaaaagttccttctggtattccacttgtgaggtgattatatcctcttcagtgctctatatattcatgcctaacgtcatctgctcatcggtgctgagataacactgtttatgaattttatcttcttagacactctttacagttttcataacatgaagttcgccagaaaaaggttcctcctagatataacttctgaggtgatgcttctattaacccttgtatagcgcgtttatcttatttgtatcatcatgttttcgtcgtatcatgtctttgttaagacttaggtaaactgttcttgtggggagctgtaagttataactgtatttgtatttatggcttgatgggacagtgtttttatcatactcttaaggagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="11104" stop="9915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10804" g_stop="10215" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E548850" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10804" e_stop="10215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGA</genome_strand>
        <mrna_strand>TCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCCGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCTTTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548849" ref_strand="+" ref_description="SGN-E548849 [TUS-64-P20]">
      <seq>cttaattaaaataattacctcgccttcatcagatctggttgttggaaatgtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgtaatccaatatcaaccattgcattcacagttgttgtgtggaaattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12734" stop="10360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12434" g_stop="12392" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11350" g_stop="10660" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="734" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E548849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12434" e_stop="12392"/>
          <exon e_start="11350" e_stop="10660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTC</genome_strand>
        <mrna_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543269" ref_strand="+" ref_description="SGN-E543269 [TUS-64-P24]">
      <seq>cttaattaaaataattacctcgccttcatcagatctggttgttggaaatgtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgttatccaatatcaaccattgcattcacagttgttgtgtggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12734" stop="10366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12434" g_stop="12392" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11350" g_stop="10666" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="728" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E543269" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12434" e_stop="12392"/>
          <exon e_start="11350" e_stop="10666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAA</genome_strand>
        <mrna_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTTATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699136" ref_strand="+" ref_description="SGN-E699136 [FA08DB06]">
      <seq>gtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgtaatccaatatcaaccattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="11644" stop="10385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11344" g_stop="11265" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11264" i_stop="11142" i_length="123">
            <donor d_prob="0.548" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11141" g_stop="10685" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="537" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E699136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11344" e_stop="11265"/>
          <exon e_start="11141" e_stop="10685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATT</genome_strand>
        <mrna_strand>GTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAG...........................................................................................................................AGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324487" ref_strand="+" ref_description="SGN-E324487 [cTOC-9-A13]">
      <seq>tggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="11561" stop="10462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11261" g_stop="10762" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E324487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11261" e_stop="10762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCAT</genome_strand>
        <mrna_strand>TGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367261" ref_strand="+" ref_description="SGN-E367261 [cLPT-5-B19]">
      <seq>cttctcataattaaaaataattacctcgccttcatcagatctggtcgttggttgagccgcctttgcttgtgtgcatctcgattgatttatggggttgcttattgtctagctcacaagtacaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcacgtgaaatggcagagcttttcggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgttctcggagaaatcataaagaagttggcaattgtgacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12738" stop="10550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12439" g_stop="12392" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12391" i_stop="12241" i_length="151">
            <donor d_prob="0.778" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12240" g_stop="12168" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="122" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12167" i_stop="11265" i_length="903">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11264" g_stop="10850" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="537" r_length="415" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E367261" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12439" e_stop="12392"/>
          <exon e_start="12240" e_stop="12168"/>
          <exon e_start="11264" e_stop="10850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTAATT-AAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGC</genome_strand>
        <mrna_strand>CTTCTCATAATTAAAAATAATTACCTCGCCTTCATCAGATCTGGTCGTT.......................................................................................................................................................GGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTGATTTATGGGGTTGCTTATTGTCTAGCTCACAAGTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCACGTGAAATGGCAGAGCTTTTCGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTTCTCGGAGAAATCATAAAGAAGTTGGCAATTGTGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303799" ref_strand="+" ref_description="SGN-E303799 [cLEX-4-O22]">
      <seq>ttaattaaaataattacctcgccttcatcagatctggttgttggaaatgtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcaaactgagacctcattttagtaactttaaccagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctgcttgatggaataccttattgaaatctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12733" stop="10645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12433" g_stop="12392" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11350" g_stop="10945" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="448" r_length="406" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E303799" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12433" e_stop="12392"/>
          <exon e_start="11350" e_stop="10945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTC</genome_strand>
        <mrna_strand>TTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAAACTGAGACCTCATTTTAGTAACTTTAACCAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTGCTTGATGGAATACCTTATTGAAATCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316439" ref_strand="+" ref_description="SGN-E316439 [cTOA-25-D18]">
      <seq>ttttattttgtgcatcttcggtatgttttcgtatttgaatgaactgaatttgttgttttctgtttttgtttctgttcttcttttgtggatttagggttgagccgcctttgcttgtgtgcatctcgattaatttatggggtagcttatcgtctagctcacaggtacaggttcagtttagtgttgctgctgatactcgaactggggatttttcagtttttttttcaactcactaggtcattcccttgggcggggtgaattttatagggcaatttatggtgttcgtgaacctatggtatatctatcaacttagatattttgggtagatactccgttgaattaatctaatattatctgttgacattgatgctacaaaaaaagaagcttaaatggtgcacttgatgctaaaaaaaagttcgttgttttaatggtgcagcgatgttataaaaattctatatcttcatctgccattgtggactcatgatagaactcaattttcgagtcatttactaaatgatactgatgatatctgtgctgtagatgttgatttctaggataacttttttattaagttgcttttatctcaattagttcgttaaagaatgtgatagttaaatagttaataacttgttatttttcatgatttagtgatgggagtgttaaatcacaagttatcaagtgtagtgaaaatgtgcctgaatccggttagtttggataggtggtatgttgattgattgatttttactttattagagagtcaatatctannagctctgtattgaccccaaatcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="12634" stop="11240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12334" g_stop="11540" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E316439" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12334" e_stop="11540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</genome_strand>
        <mrna_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGGTATGTTGATTGATTGATTTTTACTTTATTAGAGAGT-CAATATCTANNAGCTCTGTATTGACCCC-AAATCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738836" ref_strand="+" ref_description="SGN-E738836 [LC15AF01]">
      <seq>actcttttggatctctggttttattttgttttaccttcaataagtaacaggatacagaggggataatcttttctatgaggaagtgcaagtcttgattttttttccatataagccttgcttcttagaatctgttgaactatcgaaaagtttgagctattcgacaccaaatttctcttagtctttgaagtttatcggcttattctttcatctccagatagaaaccgatattcaatcaccattgtattccattaagtatatgacagtgttaccaaagtgtagatacaagtaaagcaatgagtcagttttcgtttacttcttcttcgagctctaatttcactctcttctatcattctcagaatcataatccttcaaagtttcatgtttctgctccctttagaacatcccaaccatcgccttcacatcctattttacctcccttatgttcccgtgatccgtcttcctcatcaccacttcttgaagaaaagccagaaacatcacaatcttcttctaagtttgatcctcaagatacactaagttacaatgatgaagtttctgaggagatcagcactacaaagaagtccttggaagagttacttgttgttcgtaggccggtgaaggagtcttccgtggaaaatgatgatgaaaaaggggaagcagtgagtaactttgaggattctcaagagaaaaatgatattctggaagaacaaccatcttcctcatcatttccacttgatgctggccttaaaaaatttgcaaaaaaagtgccaatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="16941" stop="19473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17235" g_stop="17275" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17276" i_stop="18441" i_length="1166">
            <donor d_prob="0.808" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18442" g_stop="19173" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="774" r_length="732" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738836" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17235" e_stop="17275"/>
          <exon e_start="18442" e_stop="19173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGT-GGATCTCTGGTTTTATTTTGTTTTACCTTCAATAGTAAGTCTCACATTTTACTTACACTTTCTCTTTTCAAATGTTGATAGCCGCAGAGGGCGGAGATAGAAGCTCAGATACTCTAGTGTTTGCTCAAATTATGTATTTTATGTTTACGAGATTTATTTAATATGTAAAAAAGTATCAAATTTAGAATCATGTTATAATGCTAAAAGTCATTGTTCTATAATTCAAAACTGATAAAATTGAAATTCTGGCTTCGCCTCTGCCGATATATATGTTCTTGTTGGTATAGATTTTGTTAAAGGTAGATAGAAAGTAGTTTGCAAGAACATACATTTTTGTTTGATATTTGAAGGTTATTCAAGTTAATTTAACTTGTATGAGATATTTAATGACATGTTCTTGGAAATTATTTGGAAGTAATTAATTTGGTTTGTGTGAGTTATCAAGCTGTGAACATTAATTTTGAAGTCTTAAAGGTGTGTGGATCATATTTCCTTTTCAAGCCCTTTTGCATAGTTTTGGTTTTATTTTGGGAAAATGCACAAGTAGCCCTTTAGACTATGGTCGAAATTCCAGAAACACATCTTAACTAAATTAAGGTCCTATTATCCCTGAACTTATTTGTTTTGTAATTTTATATCATTTTTGTCTTATGTGACACACTTCGTGACTCCACGCAATTGAGGCGTGTGAGAGATATTTGGATGCCACGGAAGCCAAAAAGGGGCACAAAATTACAAAAAAAAAAAAGTTCAGGGCTAATAGAACCTTAGTTTAGTTAAAGTGTGTTTTTGAGATTTCGGTCATAGGTGCTTGTGCATTTTTCCCTTTAGTTTAAGAAGGCATTATGTACTCTTTATTGAAAGCCGACCATTTCATCCAAAAGTTTAAGTCGTGGATCATGTTTCTTTTTTTTTTAGCCCTTTTGCATAATTTTCTTAGTTTGAGAAGGGAATACATACTCTGTGTTGAAGTACGACTATCTCATTCAAAAGCTTAAGCTGTTAGAGGTGAATAGAGATGTATTGATTGTATTATTTTATCGTCTTCCAATATGCACCTAATATGTGGCCTAGTTTCTTGCTACGGGTGAAAACACGTAGAAATTCTTTTTGATAATGGGTGTCAGTGAGACTCGAACCAAGAACCTCCGCCTGCCCCATGTTTAAGTGAGTGATCATTTTGTGTTGTTTATGTTTCAGAGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</genome_strand>
        <mrna_strand>ACTCTTTTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAAAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAAAAATTTGCAAAAAAAGTGCCAATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331610" ref_strand="+" ref_description="SGN-E331610 [cTOD-7-C21]">
      <seq>ttgtgctagttggctggcatgggctcaactagaggctcagttagagaatgaccgttccgctaggcagctgtttgagaaagcagttcaagccagtccgaaaaataggttcgcgtggcatgtatggggagtttttgaagctaatctaggaaatattgatcaaggaaggaaacttctaacaatagggcacatggtgaatcctagagatcctgttcttctgcaatcacttgggttgatagaatacaagaactccagtgcaaaccttgcacgagttctattccgaagagcgtctcaactagatccaaggcatcaaccagtttggattgcttggggtcggatggagtggaaagaaggaaacatttccacagctcgagaactataccagaaggctctatcgatcaactcaacaactgaaagtgctgcgcgttgtcttcaggcttggggtgttttggagcaaagagctggaaatctatcagctgctcgaagactatttagatcgtctctgaacataaactctcagagctatataacatggatgacatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="20234" stop="22244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20429" g_stop="20444" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20445" i_stop="20548" i_length="104">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20549" g_stop="20608" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="76" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20609" i_stop="21047" i_length="439">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21048" g_stop="21293" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="322" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21294" i_stop="21526" i_length="233">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21527" g_stop="21637" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="433" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21638" i_stop="21835" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21836" g_stop="21944" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="542" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E331610" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20429" e_stop="20444"/>
          <exon e_start="20549" e_stop="20608"/>
          <exon e_start="21048" e_stop="21293"/>
          <exon e_start="21527" e_stop="21637"/>
          <exon e_start="21836" e_stop="21944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTAGTTGGCTGGTAAGAGTCATTCAAAAACTTTAATCTGTCTCAGCTCTTTTCGAGTGGTTTATGCACATGTCATTTCTGGATTCCTTATAGTGGTTCTGTATTATCTTTTGTAGGCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAGGTTTGTATTTTCTGAAGTTGATCCTTTCCTATCATCATTGAACATTTCCTTTTGGCATATTACATGAGCAATCACTCAAAGTTGGAGTGCTTAACTCAAATTTGGCTCGGCTAGGAAGTAAACACTCTACCTTAGAAGAGTGCACATCTGGTCTCAACTGACAACTAAACACTCCAACTCGTCCAATATTCATTTGGCACATAAATTTTGGAGGTGTCTAGATGATCATTTTGTAAGTTCGACTATTCAACTGACACAATGAAGACTAGTTGAGGTGTCTAGATGTGCACTTCCCGATTTTGAGTGTTTACCTGCTAGTTGAGGCCAAGTTTTGAGTGTTTGTTCATGTATTATGAGTTTCCTTTTAATTTGATGCCTCTGTCACTTTATTTTCAATTTTGTTTATAATTCTTGTACTTGATACTCCTAAACAAAGCAGAAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATTGTAAGACCTTTCGTTTCAATAGTAAATGCTATAGAATATCGAATAAACTCATTTACTAAAAGACTCACTCGAATCGTTCAAGCTCTTGACATGGTTAATAGATGATGAAAGACTAAAAGAACTGAATACATTTGATGAACCTCATCACTGCCTTTTCCATATGTTCTCAACAGTCTTAAGATAATAAAACTTGTAACTTTAACAACTGAATACCTAACTTGGTACTGATTTAGGCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAGGTAATGCTCATTTCTAATAGATAGAGTAAGTTTCTAGTTTGCTTTTCGTAAGACATTTTGATGCAAATTGTGGAGGTTAGTCCAAACTCGTAACTCTGGCTTGCAGCTTAGTCTGTCCTTTGTTCCAACAAGTAGTATATTCTGGTTATATGTAATCTTCTCCACATAGGAAATGTACTAAAGAGTTGTTTACTATAGGCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGG</genome_strand>
        <mrna_strand>TTGTGCTAGTTGGCTG........................................................................................................GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATGACCGTTCCGCTAGGCAGCTGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTGCAATCACTTGGGTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT.........................................................................................................................................................................................................................................GCTTGGGGTCGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG......................................................................................................................................................................................................GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321798" ref_strand="+" ref_description="SGN-E321798 [cTOB-25-J23]">
      <seq>tggcatgtatggggagtttttgaagctaatctaggaaatattgatcaaggaaggaaacttctaacaatagggcacatggtgaatcctagagatcctgttcttctccaatcacttggtttgatagaatacaagaactccagtgcaaaccttgcacgagttctattccgaagagcgtctcaactagatccaaggcatcaaccagtttggattgcttggggttggatggagtggaaagaaggaaacatttccacagctcgagaactataccagaaggctctatcgatcaactcaacaactgaaagtgctgcgcgttgtcttcaggcttggggtgttttggagcaaagagctggaaatctatcagctgctcgaagactatttagatcgtctctgaacataaactctcagagctatataacatggatgacatgggcaaatttagaggaagatcaaggtaactctatccgtgcagaggaaattcgtaacctctactttcaacagcgtactgaagttgttgatgatgagtcgtggattatgggcttcttagacgtcattgacccagcgattgacagcataaagaggctcttgaatctagatcagaactcttactacaaggtaaaagagtctgcttctaatactactgctggagacgacgttgaggggagcacagaagaatcagcttctccctcctcggctaaacgtcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="20784" stop="22626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21084" g_stop="21293" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21294" i_stop="21526" i_length="233">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21527" g_stop="21637" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21638" i_stop="21835" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21836" g_stop="22012" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="498" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22013" i_stop="22120" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22121" g_stop="22321" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="700" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E321798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21084" e_stop="21293"/>
          <exon e_start="21527" e_stop="21637"/>
          <exon e_start="21836" e_stop="22012"/>
          <exon e_start="22121" e_stop="22321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATTGTAAGACCTTTCGTTTCAATAGTAAATGCTATAGAATATCGAATAAACTCATTTACTAAAAGACTCACTCGAATCGTTCAAGCTCTTGACATGGTTAATAGATGATGAAAGACTAAAAGAACTGAATACATTTGATGAACCTCATCACTGCCTTTTCCATATGTTCTCAACAGTCTTAAGATAATAAAACTTGTAACTTTAACAACTGAATACCTAACTTGGTACTGATTTAGGCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAGGTAATGCTCATTTCTAATAGATAGAGTAAGTTTCTAGTTTGCTTTTCGTAAGACATTTTGATGCAAATTGTGGAGGTTAGTCCAAACTCGTAACTCTGGCTTGCAGCTTAGTCTGTCCTTTGTTCCAACAAGTAGTATATTCTGGTTATATGTAATCTTCTCCACATAGGAAATGTACTAAAGAGTTGTTTACTATAGGCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAGGTATATGAGTCATTTCCTTCTATGACCACATTTCAAGCATTGTTATACATCAGTGTTCCATATAGCTGCTCTTCTCCCTAACATCACTAGACGTTTTTGTTGACACAGCGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCT-AACGTC</genome_strand>
        <mrna_strand>TGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT.........................................................................................................................................................................................................................................GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG......................................................................................................................................................................................................GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG............................................................................................................CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAAACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295160" ref_strand="+" ref_description="SGN-E295160 [cLET-20-F5]">
      <seq>gaagttgttgatgatgagtcgtggattatgggcttcttagacgtcattgacccagcgattgacagcataaagaggctcttgaatctagatcagaactcttactacaaggtaaaagagtctgcttctaatactactgctggagacgacgttgaggggagcacagaagaatcagcttctccctcctcggctaacgtcaatgacaataacatagatacaggaagtggctttgatttagatgattttatcagtgtaatgctgtctttagacccttcaaagctggaagttcagcttacaacatctcttaaggaccctccgaaaatcgccagaactactaatggggtgtggcgaccatcgacaaagactagtagaacatcaacaacactttgattttacaacaacaacgacatacttaatgtaacctcactagtgtggtctgggagggcggaggacgaaaggtgatgtgttgcagccttacctttacctcgtgaaagtagagagactgtttctgactcagctcaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="21827" stop="22949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22127" g_stop="22649" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E295160" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22127" e_stop="22649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATG</genome_strand>
        <mrna_strand>GAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAAGTAGAGAGACTGTTTCTGACTCAGCTCAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277215" ref_strand="-" ref_description="SGN-E277215 [cLEL-3-A9]">
      <seq>acatacttaatgtaacctcactagtgtggtctagaagggcggagaacgaaaggtgatgtgttgcagccttacctttacctcgtgaaggtagagagactgtttctgactcagctcaatataaagtttattgttctttagtgggaattgcaacattcattaatgttgtcaaatgaagaagtcttggtccacattttgtaaattacttaggaatattgagaagaattgtataaatttgattgtaagaagaaggcaaatctacacatataatcccccccacattgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="22230" stop="23097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22530" g_stop="22813" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E277215" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22530" e_stop="22813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTAT-GAGTAAACATTGTATA</genome_strand>
        <mrna_strand>ACATACTTAATGTAACCTCACTAGTGTGGTCTAGAAGGGCGGAGAACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATAAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTAAGAAGAAGGCAAATCTACACATATAATCCCCCCCACATTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700332" ref_strand="+" ref_description="SGN-E700332 [FA12DC08]">
      <seq>atctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25253" stop="28414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25553" g_stop="25712" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="274" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="576" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="821" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28114" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="876" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E700332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25553" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCT</genome_strand>
        <mrna_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344531" ref_strand="+" ref_description="SGN-E344531 [cTOF-14-J10]">
      <seq>tctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggangtgacttagtcatagaaagtaccggagtttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25254" stop="28071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25554" g_stop="25712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="273" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="575" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27771" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="621" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E344531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25554" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTA</genome_strand>
        <mrna_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGANGTGACTTAGTCATAGAAAGTACCGGAGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344574" ref_strand="+" ref_description="SGN-E344574 [cTOF-14-I9]">
      <seq>tctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25254" stop="28071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25554" g_stop="25712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="273" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="575" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27771" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="621" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E344574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25554" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTA</genome_strand>
        <mrna_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327891" ref_strand="+" ref_description="SGN-E327891 [cTOC-22-A12]">
      <seq>tctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaagtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25254" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25554" g_stop="25712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="273" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="575" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="620" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E327891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25554" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAAGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326927" ref_strand="+" ref_description="SGN-E326927 [cTOC-18-F5]">
      <seq>tctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctccatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25254" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25554" g_stop="25712" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="273" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="574" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E326927" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25554" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCT-CCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746650" ref_strand="+" ref_description="SGN-E746650 [GI|47104100]">
      <seq>ctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25255" stop="75080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25555" g_stop="25712" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="272" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="574" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="819" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28731" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="1491" r_length="672" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28732" i_stop="28891" i_length="160">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28892" g_stop="28901" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="1501" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E746650" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25555" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28731"/>
          <exon e_start="28892" e_stop="28901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAG</genome_strand>
        <mrna_strand>CTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271217" ref_strand="+" ref_description="SGN-E271217 [cLEM-5-E2]">
      <seq>tatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25256" stop="27380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25556" g_stop="25712" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="271" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27080" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="511" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E271217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25556" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATC</genome_strand>
        <mrna_strand>TATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310248" ref_strand="+" ref_description="SGN-E310248 [cTOA-1-I15]">
      <seq>atctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaagattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagttactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25257" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25557" g_stop="25712" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="270" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27075" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="505" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E310248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25557" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATG</genome_strand>
        <mrna_strand>ATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAAGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTTACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312367" ref_strand="+" ref_description="SGN-E312367 [cTOA-5-L11]">
      <seq>atctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgaatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaagatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaaaactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25257" stop="27343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25557" g_stop="25712" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="271" r_length="115" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27043" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="474" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E312367" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25557" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATG-ATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTT</genome_strand>
        <mrna_strand>ATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGAATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAAGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAAACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318026" ref_strand="+" ref_description="SGN-E318026 [cTOA-30-H24]">
      <seq>tatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25260" stop="27441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25560" g_stop="25712" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="267" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27141" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="568" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E318026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25560" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGG</genome_strand>
        <mrna_strand>TATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554077" ref_strand="+" ref_description="SGN-E554077 [cTSC-3-C20]">
      <seq>tcggcacgaggctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacattccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25273" stop="28189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25562" g_stop="25712" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="265" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="567" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27889" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="732" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E554077" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25562" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACA-TCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCC</genome_strand>
        <mrna_strand>TCGGCACGAGGCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATTCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739277" ref_strand="+" ref_description="SGN-E739277 [LC16DC01]">
      <seq>ccattatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacnactactcactcttacaccggtgaccaaaggcttcttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25266" stop="28423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25566" g_stop="25712" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="261" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="563" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="808" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28123" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="872" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E739277" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25566" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGC</genome_strand>
        <mrna_strand>CCATTATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACNACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207281" ref_strand="+" ref_description="SGN-E207281 [cLEC-30-E2]">
      <seq>cataatctcatccattttcttccctgcattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctcgaattatcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctttgctattggaggaaggaagaacaagacgatagttactgatgcaaagttgaaagtggctatcaatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25267" stop="27205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25567" g_stop="25712" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="260" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26905" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="325" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E207281" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25567" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATT</genome_strand>
        <mrna_strand>CATAATCTCATCCATTTTCTTCCCTGCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTCGAATTATCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTTTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGACGATAGTTACTGATGCAAAGTTGAAAGTGGCTATCAATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553908" ref_strand="+" ref_description="SGN-E553908 [cTSC-2-J3]">
      <seq>ctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaagttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25273" stop="28395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25573" g_stop="25712" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="254" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="556" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="801" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28095" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="837" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E553908" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25573" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTT</genome_strand>
        <mrna_strand>CTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAAGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723686" ref_strand="+" ref_description="SGN-E723686 [FC21BD11]">
      <seq>cggccgaattgattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25294" stop="28234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25587" g_stop="25712" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="240" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="542" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27934" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="751" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E723686" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25587" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCC</genome_strand>
        <mrna_strand>CGGCCGAATTGATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202767" ref_strand="+" ref_description="SGN-E202767 [cLEB-1-B6]">
      <seq>gcacgagaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25309" stop="27384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25602" g_stop="25712" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="225" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27084" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="469" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E202767" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25602" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTG</genome_strand>
        <mrna_strand>GCACGAGAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281417" ref_strand="-" ref_description="SGN-E281417 [cLEL-1-E19](-)">
      <seq>gcacgagaacttacacaattgttcttcatcaacacataaactgtactgctgttgctgcaattctcttaaagaacaatggctgctctctcactaaccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtcgaaaagactcacctcttgatgtcattgccatcaatgacactggtggagtcaagcatgcctctcaccttctcaaatatgactccacccttggcatctttgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25309" stop="27351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25602" g_stop="25712" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="225" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27051" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="436" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E281417" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281417" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25602" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTG</genome_strand>
        <mrna_strand>GCACGAGAACTTACACAATTGTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGCAATTCTCTTAAAGAACAATGGCTGCTCTCTCACTAACCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTCGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGAGTCAAGCATGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281416" ref_strand="-" ref_description="SGN-E281416 [cLEL-1-E17](-)">
      <seq>gcacgagaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25309" stop="27272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25602" g_stop="25712" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="225" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26972" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="357" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E281416" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281416" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25602" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATT</genome_strand>
        <mrna_strand>GCACGAGAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709829" ref_strand="+" ref_description="SGN-E709829 [FA53BD06]">
      <seq>ccctatacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaacgtgccggtaaacacatccaggccggagcccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggcgtccatgctgaactttacagccatgatgaacctatcatcagcaatgccctcttgtaccaccaactgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25305" stop="28238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25604" g_stop="25712" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="223" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="525" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27938" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="740" r_length="215" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E709829" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25604" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAG-CCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG-CCTCTTGTACCACCAACTGCCTTGC</genome_strand>
        <mrna_strand>CCCTATACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAACGTGCCGGTAAACACATCCAGGCCGGAGCCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGCGTCCATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCCTCTTGTACCACCAACTGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316126" ref_strand="+" ref_description="SGN-E316126 [cTOA-23-F14]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccgggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgactccctacttatggtgntggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="28220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="522" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27920" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="717" r_length="195" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E316126" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACC-GGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTG</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGAC-TCCCTACTTATGGTGNTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316027" ref_strand="+" ref_description="SGN-E316027 [cTOA-23-E20]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaaccctccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="522" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="567" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E316027" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCCTCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316055" ref_strand="+" ref_description="SGN-E316055 [cTOA-23-M22]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaaccctccatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="522" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E316055" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCCTCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729188" ref_strand="+" ref_description="SGN-E729188 [LA20BA11]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagacatccaagtcgtctccaaccgcgaccctgtgaacctcccatggggagaacttggagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="522" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E729188" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGACATCCAAGTCGTCTCCAACCGCGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316286" ref_strand="+" ref_description="SGN-E316286 [cTOA-23-H22]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatcttggatgctgacgtcaagccggtgggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="27441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27141" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="521" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E316286" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATC-AATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGG</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTGGATGCTGACGTCAAGCCGGTGGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCT-CCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258146" ref_strand="+" ref_description="SGN-E258146 [cLEG-49-C15]">
      <seq>taaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccgggtggcactgatggcatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25307" stop="27384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25607" g_stop="25712" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="220" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27084" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="464" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E258146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25607" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTG</genome_strand>
        <mrna_strand>TAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGGTGGCACTGATGGCATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272613" ref_strand="+" ref_description="SGN-E272613 [cLEM-21-L19]">
      <seq>aaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggntggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgtngtttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgccctcttgtaccaccaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25308" stop="28233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25608" g_stop="25712" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="219" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="522" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27933" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="732" r_length="210" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E272613" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25608" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGG-TGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTG-TTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG-CCTCTTGTACCACCAACTGC</genome_strand>
        <mrna_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGNTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTNGTTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCCTCTTGTACCACCAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272658" ref_strand="+" ref_description="SGN-E272658 [cLEM-21-P12]">
      <seq>aaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcataaaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25308" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25608" g_stop="25712" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="219" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="521" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="566" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E272658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25608" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAAAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268788" ref_strand="+" ref_description="SGN-E268788 [cLEM-4-B15]">
      <seq>aaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaagattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25308" stop="27388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25608" g_stop="25712" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="219" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27088" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="467" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E268788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25608" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGA</genome_strand>
        <mrna_strand>AAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAAGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270654" ref_strand="+" ref_description="SGN-E270654 [cLEM-6-O1]">
      <seq>ttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25312" stop="28069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25612" g_stop="25712" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="215" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="517" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27769" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="561" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E270654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25612" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTG</genome_strand>
        <mrna_strand>TTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391176" ref_strand="+" ref_description="SGN-E391176 [TUS-47-N2]">
      <seq>ccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25314" stop="28175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25614" g_stop="25712" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="213" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="515" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="665" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E391176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25614" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</genome_strand>
        <mrna_strand>CCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271533" ref_strand="+" ref_description="SGN-E271533 [cLEM-23-C8]">
      <seq>cacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25315" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25615" g_stop="25712" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="212" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="514" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E271533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25615" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>CACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287539" ref_strand="+" ref_description="SGN-E287539 [cLES-9-H5]">
      <seq>cacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25315" stop="27352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25615" g_stop="25712" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="212" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27052" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="424" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E287539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25615" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGA</genome_strand>
        <mrna_strand>CACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699259" ref_strand="+" ref_description="SGN-E699259 [FA09BC01]">
      <seq>ccaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgaccttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtccaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25317" stop="28223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25616" g_stop="25712" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="211" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="513" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27923" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="713" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E699259" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25616" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGA-CTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGT-CAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTAC</genome_strand>
        <mrna_strand>CCAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACCTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736771" ref_strand="+" ref_description="SGN-E736771 [LC07AE08]">
      <seq>aatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgacccaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25318" stop="28493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25618" g_stop="25712" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="511" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="756" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28193" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="890" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E736771" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25618" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCT</genome_strand>
        <mrna_strand>AATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCCAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699368" ref_strand="+" ref_description="SGN-E699368 [FA09DB11]">
      <seq>aatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcaacaatgcctcttgtaccaccaactgccttgcttctttcgtccaggttcttgaccagaaatttggaattatcaggggaacaatgacaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25318" stop="28388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25618" g_stop="25712" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="209" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="511" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="756" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28088" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="785" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E699368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25618" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACT</genome_strand>
        <mrna_strand>AATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAACAATGCCTCTTGTACCACCAACTGCCTTGCTTCTTTCGTCCAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAGGGGAACAATGACAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320014" ref_strand="+" ref_description="SGN-E320014 [cTOB-31-O7]">
      <seq>tttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaanggacatccctacttatgttgntggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25320" stop="28237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25620" g_stop="25712" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="207" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="509" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27937" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="720" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E320014" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25620" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTG</genome_strand>
        <mrna_strand>TTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAANG-GACATCCCTACTTATGTTGNTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212721" ref_strand="+" ref_description="SGN-E212721 [cLEC-73-J11]">
      <seq>ttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25321" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25621" g_stop="25712" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="206" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="508" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E212721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25621" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>TTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248756" ref_strand="+" ref_description="SGN-E248756 [cLEG-5-C4]">
      <seq>ttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctggtctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagcccgttggcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25326" stop="27374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25626" g_stop="25712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="201" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27074" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="435" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E248756" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25626" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGAT</genome_strand>
        <mrna_strand>TTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGGTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCCGTTGGCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284477" ref_strand="+" ref_description="SGN-E284477 [cLER-16-J6]">
      <seq>caacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaaaaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25331" stop="28175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25631" g_stop="25712" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="196" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="498" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="648" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284477" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25631" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</genome_strand>
        <mrna_strand>CAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAAAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210978" ref_strand="+" ref_description="SGN-E210978 [cLEC-69-D16]">
      <seq>taaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25338" stop="28271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25638" g_stop="25712" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="189" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="491" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="736" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E210978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25638" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG</genome_strand>
        <mrna_strand>TAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266124" ref_strand="+" ref_description="SGN-E266124 [cLEI-6-L9]">
      <seq>aactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25340" stop="27410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25640" g_stop="25712" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="187" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27110" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="457" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E266124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25640" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</genome_strand>
        <mrna_strand>AACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252191" ref_strand="+" ref_description="SGN-E252191 [cLEG-8-P1]">
      <seq>ctgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctgttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatattgggaactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25342" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25642" g_stop="25712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="185" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="491" r_length="306" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E252191" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25642" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATA-T--G-ACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>CTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTGTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATTGGGAACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257466" ref_strand="+" ref_description="SGN-E257466 [cLEG-45-L9]">
      <seq>ctgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtccatggaaaagtcatccaagtcgtctccaaccgtgaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25342" stop="27425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25642" g_stop="25712" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="185" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27125" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="470" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E257466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25642" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCT</genome_strand>
        <mrna_strand>CTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCCATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257981" ref_strand="+" ref_description="SGN-E257981 [cLEG-48-F17]">
      <seq>tactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25345" stop="28067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25645" g_stop="25712" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="182" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="484" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="526" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E257981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25645" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTT</genome_strand>
        <mrna_strand>TACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729619" ref_strand="+" ref_description="SGN-E729619 [LA21CD05]">
      <seq>gagggttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25648" g_stop="25712" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="179" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="481" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="726" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28214" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="881" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E729619" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25648" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTC</genome_strand>
        <mrna_strand>GAGGGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700472" ref_strand="+" ref_description="SGN-E700472 [FA13AH10]">
      <seq>tgctgttgctgtacttctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25348" stop="28246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25648" g_stop="25712" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="179" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="481" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27946" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="702" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E700472" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25648" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCG</genome_strand>
        <mrna_strand>TGCTGTTGCTGTACTTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279154" ref_strand="-" ref_description="SGN-E279154 [cLEL-4-L21](-)">
      <seq>gcacgagctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactnggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="27411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25649" g_stop="25712" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="178" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27111" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="450" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E279154" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279154" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25649" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACT-GGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCT</genome_strand>
        <mrna_strand>GCACGAGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTNGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698354" ref_strand="+" ref_description="SGN-E698354 [FA06AB09]">
      <seq>ccgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaatttatcagggaacaatgacaactactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25350" stop="28393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25650" g_stop="25712" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="177" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="479" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="724" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28093" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="758" r_length="34" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E698354" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25650" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTC</genome_strand>
        <mrna_strand>CCGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTTATCAGGGAACAATGACAACTACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738392" ref_strand="+" ref_description="SGN-E738392 [LC13BH07]">
      <seq>tgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgtttccacccctaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25351" stop="28569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25651" g_stop="25712" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="176" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="478" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="723" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28269" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="933" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738392" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25651" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACG</genome_strand>
        <mrna_strand>TGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTTCCACCCCTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342153" ref_strand="+" ref_description="SGN-E342153 [cTOF-10-D11]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactnggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacgagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgtngnntggtgtcaatgctgaactttacagccatgatgaacctatncatcagcatgcctcttgtaccaccaactgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="478" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27938" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="691" r_length="213" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E342153" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACT-GGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTG-TTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTAT-CATCAGCAATGCCTCTTGTACCACCAACTGCCTTGC</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTNGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGAC-GAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTNGNNTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATNCATCAGC-ATGCCTCTTGTACCACCAACTGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299035" ref_strand="+" ref_description="SGN-E299035 [cLET-42-H18]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="477" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27884" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="636" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E299035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342129" ref_strand="+" ref_description="SGN-E342129 [cTOF-10-E14]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactgagtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaaagatgtgctcatcaccgcccccggaacaggtgacatccctacttatgttgtnggtgtcaatgctgaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="478" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27883" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="636" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E342129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTG-GTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTT</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGAGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAAGATGTGCTCATCACCGCCCCCGGAACAGGTGACATCCCTACTTATGTTGTNGGTGTCAATGCTGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290796" ref_strand="+" ref_description="SGN-E290796 [cLET-10-K17]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttaatcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="477" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27802" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="554" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E290796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGG</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAATCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268641" ref_strand="+" ref_description="SGN-E268641 [cLEM-9-C17]">
      <seq>gttgctgttattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="477" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27771" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="523" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E268641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTA</genome_strand>
        <mrna_strand>GTTGCTGTTATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268676" ref_strand="+" ref_description="SGN-E268676 [cLEM-9-E1]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="28069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="477" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27769" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="521" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E268676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTG</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292500" ref_strand="+" ref_description="SGN-E292500 [cLET-16-F6]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="27360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27060" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="395" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E292500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292642" ref_strand="+" ref_description="SGN-E292642 [cLET-11-O11]">
      <seq>gttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25352" stop="26249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25652" g_stop="25712" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="175" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E292642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25652" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT</genome_strand>
        <mrna_strand>GTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345839" ref_strand="+" ref_description="SGN-E345839 [cTOF-18-P8]">
      <seq>ttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatcctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgtngntgggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaaatgcctcttgtaccaccaactgccttgctcctttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25353" stop="28248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25653" g_stop="25712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="174" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="476" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27948" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="701" r_length="225" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E345839" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25653" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTT-GGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGC-AATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTC</genome_strand>
        <mrna_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATCCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTNGNTGGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300610" ref_strand="+" ref_description="SGN-E300610 [cLET-45-B23]">
      <seq>ttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25353" stop="27439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25653" g_stop="25712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="174" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27139" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="473" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E300610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25653" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATG</genome_strand>
        <mrna_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291191" ref_strand="+" ref_description="SGN-E291191 [cLET-8-P24]">
      <seq>ttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25353" stop="27288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25653" g_stop="25712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="174" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26988" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="322" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E291191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25653" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTG</genome_strand>
        <mrna_strand>TTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730534" ref_strand="+" ref_description="SGN-E730534 [LA24BF12]">
      <seq>cgctttaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttcccacctcaactggtgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="28493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25654" g_stop="25712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="475" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="720" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28193" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="854" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E730534" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25654" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCT</genome_strand>
        <mrna_strand>CGCTTTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCCACCTCAACTGGTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731569" ref_strand="+" ref_description="SGN-E731569 [LA27CB07]">
      <seq>cgctttaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="28468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25654" g_stop="25712" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="173" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="475" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="720" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28168" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="829" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E731569" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25654" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</genome_strand>
        <mrna_strand>CGCTTTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270985" ref_strand="+" ref_description="SGN-E270985 [cLEM-22-K3]">
      <seq>gctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="28213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25655" g_stop="25712" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27913" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="662" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E270985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25655" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</genome_strand>
        <mrna_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285315" ref_strand="+" ref_description="SGN-E285315 [cLER-20-C12]">
      <seq>gctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="28081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25655" g_stop="25712" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27781" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="530" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25655" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAG</genome_strand>
        <mrna_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291059" ref_strand="+" ref_description="SGN-E291059 [cLET-8-I5]">
      <seq>gctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccagagagtctttgattcttacttcaagccgggtggcactgatggcatctctgtcgatggaaaagtcatccaaatcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25655" g_stop="25712" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E291059" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25655" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCAGAGAGTCTTTGATTCTTACTTCAAGCCGGGTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAATCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293767" ref_strand="+" ref_description="SGN-E293767 [cLET-21-L10]">
      <seq>gctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25655" g_stop="25712" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="474" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E293767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25655" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341950" ref_strand="+" ref_description="SGN-E341950 [cTOF-9-P14]">
      <seq>gctgtaattctcttaaagaacatggctgctctctcagtagccaacaccttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25355" stop="27264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25655" g_stop="25712" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="172" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26964" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="297" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E341950" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25655" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACA-CTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAG-AATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTG</genome_strand>
        <mrna_strand>GCTGTAATTCTCTTAAAGAAC-ATGGCTGCTCTCTCAGTAGCCAACACCTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738994" ref_strand="+" ref_description="SGN-E738994 [LC15DA02]">
      <seq>ctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25356" stop="28523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="718" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28223" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="882" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTC</genome_strand>
        <mrna_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731651" ref_strand="+" ref_description="SGN-E731651 [LA27DB07]">
      <seq>ctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccnggtgaccaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25356" stop="28498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="718" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28198" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="857" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E731651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACC-GGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGC</genome_strand>
        <mrna_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCNGGTGACC-AAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731422" ref_strand="+" ref_description="SGN-E731422 [LA27AC12]">
      <seq>ctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggtcggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcctgatgcaagccacagggatcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25356" stop="28440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="718" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28141" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="800" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E731422" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAG</genome_strand>
        <mrna_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGTCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCCTGATGCAAGCCACAGGGATCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294643" ref_strand="+" ref_description="SGN-E294643 [cLET-22-M10]">
      <seq>gtgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="28078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27778" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="526" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E294643" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAG</genome_strand>
        <mrna_strand>GTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728892" ref_strand="+" ref_description="SGN-E728892 [LA19BB12]">
      <seq>ctgttattctcttaaagaccaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgacggaaaagtcatccaagaagactacaaccgtgaccctgtgaacctcccatggggagaacttggagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25356" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728892" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>CTGTTATTCTCTTAAAGACCAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGACGGAAAAGTCATCCAAGAAGACTACAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293757" ref_strand="+" ref_description="SGN-E293757 [cLET-21-F10]">
      <seq>ctgtaattcttttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25356" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25712" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="171" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="473" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E293757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>CTGTAATTCTTTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729864" ref_strand="+" ref_description="SGN-E729864 [LA22BD04]">
      <seq>tgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="28482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="472" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="717" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28182" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="840" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E729864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAA</genome_strand>
        <mrna_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285123" ref_strand="+" ref_description="SGN-E285123 [cLER-20-O13]">
      <seq>tgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttantcatagaaggtaccggagtttttgtagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="28074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="472" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27774" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="521" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGAC</genome_strand>
        <mrna_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTANTCATAGAAGGTACCGGAGTTTTTGTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279405" ref_strand="+" ref_description="SGN-E279405 [cLER-11-H20]">
      <seq>tgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcatgcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="28061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="472" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27761" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="508" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E279405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGG</genome_strand>
        <mrna_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCATGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297134" ref_strand="+" ref_description="SGN-E297134 [cLET-29-E21]">
      <seq>tgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="472" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342352" ref_strand="+" ref_description="SGN-E342352 [cTOF-8-B2]">
      <seq>tgtaattctcttaaanacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaaagcctctcaccttctcaaatatgactccacccttggcattcttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaaagtcatccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25357" stop="27406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25712" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27106" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="437" r_length="268" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E342352" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGC-AAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGG-AAAAGTCATCCAAGT</genome_strand>
        <mrna_strand>TGTAATTCTCTTAAA-NACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATTCTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAAGTCATCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735395" ref_strand="+" ref_description="SGN-E735395 [LC01BF08]">
      <seq>gtaattctcttaacgtttatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttcccacctcaactggtgctgctaaggctgtggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25377" stop="28509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="470" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="715" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="865" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735395" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTG</genome_strand>
        <mrna_strand>GTAATTCTCTTAACG-TTTATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCCACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728148" ref_strand="+" ref_description="SGN-E728148 [LA16DE01]">
      <seq>gtcattctcttacagaaccatggctgctctctcagtagccaacacttctcttaaaggtaacagacaaaggattctctgaattctctgggttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttggtctctgttgctggcttacgaacctctgctattggaggaaggaagaacaatgaggataataactgacgcaaagttgaaagcggctatcattggatttggaagaattggaacgaacttcttgaggtgctggcatgggataaaagactcacctcttgatgtcattgccatcaatgacactggtggtgcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttgggactgatggcatctctgtcgaaggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagacaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="28422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="170" r_length="115" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="472" r_length="302" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="717" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28122" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="780" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728148" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACA-ACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAA-GAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATG</genome_strand>
        <mrna_strand>GTCATTCTCTTACAGAACCATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAA....................................................................................................................GGTAACAGACAAAGGATTCTCTGAATTCTCTGGGTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGGTCTCTGTTGCTGGCTTACGAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAATGAGGATAATAACTGACGCAAAGTTGAAAGCGGCTATCATTGGATTTGGAAGAATTGGAACGAACTTCTTGAGGTGCTGGCATGGGATAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTG-CAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGGACTGATGGCATCTCTGTCGAAGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGACAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342582" ref_strand="+" ref_description="SGN-E342582 [cTOF-7-M9]">
      <seq>gtaattctcttaaagacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtacccgagtttttgtagacagagaaagtgccngtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctactttatgtgnntggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgccctcttgtaccaccaactgccttgctcctttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="28246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="470" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27946" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="693" r_length="223" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E342582" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTAC-TTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG-CCTCTTGTACCACCAACTGCCTTGCTCCTTTCG</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAG-ACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCCGAGTTTTTGTAGACAGAGAAAGTGCCNGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTTATGTGNNTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCCTCTTGTACCACCAACTGCCTTGCTCCTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249781" ref_strand="+" ref_description="SGN-E249781 [cLEF-57-J21]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="28184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="471" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27884" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="630" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E249781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291992" ref_strand="+" ref_description="SGN-E291992 [cLET-7-B21]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="28076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="471" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27776" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="522" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E291992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAG</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282824" ref_strand="+" ref_description="SGN-E282824 [cLER-15-I24]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27108" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="437" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E282824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCG</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290274" ref_strand="+" ref_description="SGN-E290274 [cLET-5-B10]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27108" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="437" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E290274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCG</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292847" ref_strand="+" ref_description="SGN-E292847 [cLET-11-I10]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27056" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="385" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E292847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTC</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740277" ref_strand="+" ref_description="SGN-E740277 [LC20DB09]">
      <seq>gttattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26926" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E740277" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</genome_strand>
        <mrna_strand>GTTATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736860" ref_strand="+" ref_description="SGN-E736860 [LC07CD03]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26926" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E736860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736930" ref_strand="+" ref_description="SGN-E736930 [LC07DD03]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26926" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E736930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738236" ref_strand="+" ref_description="SGN-E738236 [LC12DE11]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26926" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739370" ref_strand="+" ref_description="SGN-E739370 [LC17AG02]">
      <seq>gtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="27226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25658" g_stop="25712" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="169" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26926" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E739370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25658" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</genome_strand>
        <mrna_strand>GTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318862" ref_strand="+" ref_description="SGN-E318862 [cTOB-11-E7]">
      <seq>taattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacatcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25359" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25659" g_stop="25712" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="470" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E318862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25659" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACATCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737721" ref_strand="+" ref_description="SGN-E737721 [LC11AA04]">
      <seq>aattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25360" stop="28522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25660" g_stop="25712" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="167" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="469" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="714" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28222" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="877" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E737721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25660" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCT</genome_strand>
        <mrna_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729533" ref_strand="+" ref_description="SGN-E729533 [LA21BD09]">
      <seq>aattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25360" stop="28456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25660" g_stop="25712" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="167" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="469" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="714" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28156" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="811" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E729533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25660" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGC</genome_strand>
        <mrna_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728442" ref_strand="+" ref_description="SGN-E728442 [LA17DD03]">
      <seq>aattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaaactatcatcagcaatgcctctttgtacaccaactgccttgctcctttcgtcaaggttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25360" stop="28258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25660" g_stop="25712" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="167" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="469" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27958" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="702" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728442" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25660" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTG</genome_strand>
        <mrna_strand>AATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAAACTATCATCAGCAATGCCTCTTTGTACACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202465" ref_strand="+" ref_description="SGN-E202465 [cLEC-6-G22]">
      <seq>attctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctgcaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttattcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25361" stop="28096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25661" g_stop="25712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="166" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="468" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27796" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="539" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E202465" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25661" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACA</genome_strand>
        <mrna_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTGCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTATTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269689" ref_strand="+" ref_description="SGN-E269689 [cLEM-17-C10]">
      <seq>attctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaagttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaagaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25361" stop="27410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25661" g_stop="25712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="166" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27110" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="436" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E269689" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25661" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</genome_strand>
        <mrna_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAA....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAAGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202077" ref_strand="+" ref_description="SGN-E202077 [cLEC-7-P18]">
      <seq>attctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25361" stop="27410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25661" g_stop="25712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="166" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27110" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="436" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E202077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25661" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</genome_strand>
        <mrna_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208730" ref_strand="+" ref_description="SGN-E208730 [cLEC-51-A5]">
      <seq>attctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtaaaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25361" stop="27315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25661" g_stop="25712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="166" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27015" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="341" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E208730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25661" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTC</genome_strand>
        <mrna_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAAAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287325" ref_strand="+" ref_description="SGN-E287325 [cLES-15-H11]">
      <seq>attctcttaaagaacaatggctgctctctcagtagccaacacttctcttaagggtaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttggtctctgttgctggcttacaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25361" stop="26236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25661" g_stop="25712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25936" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="160" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E287325" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25661" e_stop="25712"/>
          <exon e_start="25829" e_stop="25936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACC</genome_strand>
        <mrna_strand>ATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GGTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGGTCTCTGTTGCTGGCTTACAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731423" ref_strand="+" ref_description="SGN-E731423 [LA27AD01]">
      <seq>tccttttaaagaacnatggctgctctctcaaagccgacgcttctcttaaggttaacaacataggattctctgaattctctgggttgagaacctcatcagctgttccatttgggaggaaaactactgatgatttgttctctgttgctggctctcaaacctctgctattggaggaaggaaaaacaaaaggatagaaactgaggcatacttgaaagtggctatccctggatttggaacaattggaaggaacttcttgaggtgctggcatggtataaaagactcacctcttgatgtcattgccatcaatgacgctggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25662" g_stop="25712" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="164" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="466" r_length="302" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="711" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28130" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="782" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E731423" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25662" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCAC</genome_strand>
        <mrna_strand>TCCTTTTAAAGAACNATGGCTGCTCTCTCA-AAGCCGACGCTTCTCTTAAG....................................................................................................................GTTAACAACATAGGATTCTCTGAATTCTCTGGGTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTACTGATGATTTGTTCTCTGTTGCTGGCTCTCAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAAAACAAAAGGATAGAAACTGAGGCATACTTGAAAGTGGCTATCCCTGGATTTGGAACAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTATAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACGCTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347199" ref_strand="+" ref_description="SGN-E347199 [cTOF-25-M24]">
      <seq>ttctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaaggggaactcaacggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25362" stop="28278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25662" g_stop="25712" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="165" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="467" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="712" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28072" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="725" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E347199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25662" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGG</genome_strand>
        <mrna_strand>TTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342275" ref_strand="+" ref_description="SGN-E342275 [cTOF-8-C10]">
      <seq>ttctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25362" stop="28107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25662" g_stop="25712" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="165" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="467" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27807" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="549" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E342275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25662" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGA</genome_strand>
        <mrna_strand>TTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735910" ref_strand="+" ref_description="SGN-E735910 [LC03CE11]">
      <seq>cgttttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25362" stop="28468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25663" g_stop="25712" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="164" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="466" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="711" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28168" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="820" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735910" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25663" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</genome_strand>
        <mrna_strand>CGTTTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246447" ref_strand="+" ref_description="SGN-E246447 [cLEF-52-O8]">
      <seq>tctcttaaagaacaacggctgctctctcagaacccaacactggtcttaagcgttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccattggggaggaaaactaatgatgattcgttctctgttgctggcttacaaacgcttgctattggaggaacgaagaacaagacgatactaactgaagccaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtggcaagcaagcctctcaccttctcaacatatgactccacccttggcatctttgatgctgacgtcaagccggctggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25663" g_stop="25712" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="165" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="468" r_length="303" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27768" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="511" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E246447" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25663" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAG-GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAA-ATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTT</genome_strand>
        <mrna_strand>TCTCTTAAAGAACAACGGCTGCTCTCTCAGAACCCAACACTGGTCTTAAG....................................................................................................................CGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTGGGGAGGAAAACTAATGATGATTCGTTCTCTGTTGCTGGCTTACAAACGCTTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAACGAAGAACAAGACGATACTAACTGAAGCCAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGGCAAGCAAGCCTCTCACCTTCTCAACATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGCTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738624" ref_strand="+" ref_description="SGN-E738624 [LC14BE06]">
      <seq>ctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaactctcactggtgctgctaaagctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttccacccctaacgtctcggttgtggacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25364" stop="28585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25664" g_stop="25712" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="163" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="465" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="710" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28285" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="935" r_length="225" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738624" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25664" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAAC-CTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCT</genome_strand>
        <mrna_strand>CTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACTCTC-ACTGGTGCTGCTAAAGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTT-CCACCCCTAACGTCTCGGTTGTGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738545" ref_strand="+" ref_description="SGN-E738545 [LC14AC12]">
      <seq>ctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25364" stop="28507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25664" g_stop="25712" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="163" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="465" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="710" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28207" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="858" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25664" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCT</genome_strand>
        <mrna_strand>CTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347530" ref_strand="+" ref_description="SGN-E347530 [cTOF-26-G13]">
      <seq>tcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccgtgaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccacaactgccttgctcctttcgntcaagttcttgaccagaaatttggattatcaaggaacaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25365" stop="28278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25665" g_stop="25712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="464" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="708" r_length="244" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28083" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="730" r_length="22" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E347530" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25665" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAA</genome_strand>
        <mrna_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGTGAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCA-CAACTGCCTTGCTCCTTTCGNTCAAGTTCTTGACCAGAAATTTG.........................................................................................G-ATTATCAA-GGAACAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727839" ref_strand="+" ref_description="SGN-E727839 [LA15DE12]">
      <seq>tcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25365" stop="28261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25665" g_stop="25712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="464" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27961" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="700" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E727839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25665" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACC</genome_strand>
        <mrna_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357195" ref_strand="+" ref_description="SGN-E357195 [cLHT-17-N22]">
      <seq>tcttaaagaacaatggctgctctatcagtagccaacacttctcttaaggctaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctcagctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtcttcaaccgtgaccctgtgaacctcccatggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25365" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25665" g_stop="25712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="464" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E357195" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25665" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TCTTAAAGAACAATGGCTGCTCTATCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GCTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTTCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281894" ref_strand="+" ref_description="SGN-E281894 [cLES-2-H19]">
      <seq>tcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25365" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25665" g_stop="25712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="464" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E281894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25665" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321746" ref_strand="+" ref_description="SGN-E321746 [cTOB-25-I8]">
      <seq>cttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgccccccggaaaggtgacatccctacttatgnttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25366" stop="28239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25666" g_stop="25712" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="161" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="463" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27939" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="678" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E321746" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25666" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATG-TTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCT</genome_strand>
        <mrna_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCCGGAAAGGTGACATCCCTACTTATGNTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268461" ref_strand="+" ref_description="SGN-E268461 [cLEI-13-N6]">
      <seq>cttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25366" stop="28213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25666" g_stop="25712" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="161" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="463" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27913" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="651" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E268461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25666" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</genome_strand>
        <mrna_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366955" ref_strand="+" ref_description="SGN-E366955 [cLPT-6-E20]">
      <seq>cttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaaataatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaatcggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccaccctcggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25366" stop="28184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25666" g_stop="25712" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="161" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="463" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27884" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="622" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E366955" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25666" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</genome_strand>
        <mrna_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAAATAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATCGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTCGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299185" ref_strand="+" ref_description="SGN-E299185 [cLET-42-L24]">
      <seq>cttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctgccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25366" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25666" g_stop="25712" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="161" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="463" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="508" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E299185" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25666" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>CTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTGCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322057" ref_strand="+" ref_description="SGN-E322057 [cTOB-29-O1]">
      <seq>ttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtncaggttcttgaccagaaatttggaattatcaagggaacnatgacaactactcactctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25367" stop="28396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25667" g_stop="25712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="160" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="462" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="707" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28096" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="744" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E322057" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25667" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTA</genome_strand>
        <mrna_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTNCAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACNATGACAACTACTCACTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319073" ref_strand="+" ref_description="SGN-E319073 [cTOB-14-B14]">
      <seq>ttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgatgcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgagaccctgtgaacctaccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25367" stop="28104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25667" g_stop="25712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="160" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="462" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27804" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="541" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E319073" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25667" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCC</genome_strand>
        <mrna_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGATGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGAGACCCTGTGAACCTACCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319072" ref_strand="+" ref_description="SGN-E319072 [cTOB-14-B12]">
      <seq>ttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25367" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25667" g_stop="25712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="160" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="462" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="507" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E319072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25667" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366109" ref_strand="+" ref_description="SGN-E366109 [cLPT-15-G20]">
      <seq>ttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaaataatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaatcggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccaccctcggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25367" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25667" g_stop="25712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="160" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="462" r_length="302" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E366109" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25667" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAAATAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATCGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTCGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296848" ref_strand="+" ref_description="SGN-E296848 [cLET-26-D18]">
      <seq>ttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctcttcaccttctcaaatatgactccaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25367" stop="27334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25667" g_stop="25712" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="160" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27034" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="355" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E296848" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25667" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTC-TCACCTTCTCAAATATGACTCCACCCT</genome_strand>
        <mrna_strand>TTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTTCACCTTCTCAAATATGACTCCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282119" ref_strand="+" ref_description="SGN-E282119 [cLES-4-K7]">
      <seq>taaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25368" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25668" g_stop="25712" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="461" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E282119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25668" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284830" ref_strand="+" ref_description="SGN-E284830 [cLER-19-M15]">
      <seq>taaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggaggtgacttattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25368" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25668" g_stop="25712" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="461" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25668" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727406" ref_strand="+" ref_description="SGN-E727406 [LA14CD09]">
      <seq>aatgaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="28535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25669" g_stop="25712" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="158" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="460" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="705" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28235" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="881" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E727406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25669" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTC</genome_strand>
        <mrna_strand>AATGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738752" ref_strand="+" ref_description="SGN-E738752 [LC14DE02]">
      <seq>agaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccagcctcaaggggaaactcaacggcattgccctccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25371" stop="28554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25671" g_stop="25712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="458" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="703" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28254" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="897" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25671" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTG</genome_strand>
        <mrna_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCC-AGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729421" ref_strand="+" ref_description="SGN-E729421 [LA21AA08]">
      <seq>agaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25371" stop="28491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25671" g_stop="25712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="458" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="703" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28191" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="835" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E729421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25671" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTG</genome_strand>
        <mrna_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269266" ref_strand="+" ref_description="SGN-E269266 [cLEM-18-E20]">
      <seq>agaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25371" stop="28078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25671" g_stop="25712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="458" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27778" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="511" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E269266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25671" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAG</genome_strand>
        <mrna_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272268" ref_strand="+" ref_description="SGN-E272268 [cLEM-19-B19]">
      <seq>agaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25371" stop="28072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25671" g_stop="25712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="458" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27772" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="505" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E272268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25671" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAG</genome_strand>
        <mrna_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725939" ref_strand="+" ref_description="SGN-E725939 [LA08DC01]">
      <seq>agaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcaccaagtcgtcatccaccgtgaccctgtgaacctcccatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25371" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25671" g_stop="25712" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="457" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E725939" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25671" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>AGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCA-CCAAGTCGTCATCCACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255027" ref_strand="+" ref_description="SGN-E255027 [cLEG-31-G9]">
      <seq>gaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25372" stop="28072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25672" g_stop="25712" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="155" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="457" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27772" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E255027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25672" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAG</genome_strand>
        <mrna_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366725" ref_strand="+" ref_description="SGN-E366725 [cLPT-17-K6]">
      <seq>gaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaaataatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaatcggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccaccctcggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25372" stop="28049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25672" g_stop="25712" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="155" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="457" r_length="302" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27749" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="481" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E366725" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25672" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCAT</genome_strand>
        <mrna_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAAATAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATCGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTCGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366723" ref_strand="+" ref_description="SGN-E366723 [cLPT-17-K2]">
      <seq>gaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaaataatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaatcggaaggaacttcttgaggtgttggcatggcacaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccaccctcggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25372" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25672" g_stop="25712" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="155" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="457" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E366723" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25672" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAAATAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATCGGAAGGAACTTCTTGAGGTGTTGGCATGGCACAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTCGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283162" ref_strand="+" ref_description="SGN-E283162 [cLER-17-M10]">
      <seq>gaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtccatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctgccatggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25372" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25672" g_stop="25712" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="155" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="457" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E283162" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25672" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCCATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTGCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290261" ref_strand="+" ref_description="SGN-E290261 [cLET-5-J23]">
      <seq>gaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25372" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25672" g_stop="25712" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="155" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="457" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E290261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25672" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739774" ref_strand="+" ref_description="SGN-E739774 [LC18DC02]">
      <seq>ccttaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgacccaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25373" stop="28479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="44" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="158" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="460" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="705" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28179" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="825" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E739774" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCT</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCCAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737859" ref_strand="+" ref_description="SGN-E737859 [LC11CA04]">
      <seq>attcggcacgaggaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcataaaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25358" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="66" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="180" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="482" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="727" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28105" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="773" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E737859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGA</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAAAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284892" ref_strand="+" ref_description="SGN-E284892 [cLER-19-J9]">
      <seq>aacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25373" stop="28175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="154" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="456" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27875" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="606" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277457" ref_strand="+" ref_description="SGN-E277457 [cLER-3-I11]">
      <seq>aacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagatgatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25373" stop="28060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="154" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="456" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27760" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="491" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E277457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCG</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGATGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297618" ref_strand="+" ref_description="SGN-E297618 [cLET-28-E19]">
      <seq>tgcaagaaaaacaaaggctgctttttcagtttccaacacttctcttaaggttaacgaacaaaggattctctgaattctctggcttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagacgatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgttattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggtgggcactgatggcatctttgtcgatggaaaagcgattcaagtcgtctccaaccgtgacccttggaacctcccatggggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25369" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="49" r_length="40" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="164" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="466" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297618" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAAC-AACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>AACAAAGGCTGCTTTTTCAGTTTCCAACACTTCTCTTAAG....................................................................................................................GTTAACGAACAAAGGATTCTCTGAATTCTCTGGCTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGACGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTTATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTGGGCACTGATGGCATCTTTGTCGATGGAAAAGCGATTCAAGTCGTCTCCAACCGTGACCCTTGGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200578" ref_strand="+" ref_description="SGN-E200578 [cLEB-8-P4]">
      <seq>gcacgagagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25369" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="49" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="163" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="465" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E200578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285680" ref_strand="+" ref_description="SGN-E285680 [cLES-5-P1]">
      <seq>aacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25373" stop="27439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="154" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27139" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="453" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATG</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279038" ref_strand="-" ref_description="SGN-E279038 [cLEL-4-A15](-)">
      <seq>gcacgagaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="44" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="158" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27138" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="456" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E279038" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCAT</genome_strand>
        <mrna_strand>GAGAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280216" ref_strand="-" ref_description="SGN-E280216 [cLEL-7-L7](-)">
      <seq>gcacgaggaacaatggctgctttctcagtagccaacacttctcttagggttaacaacaaaggattctctgcatcctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="48" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27092" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="414" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E280216" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280216" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGA</genome_strand>
        <mrna_strand>AACAATGGCTGCTTTCTCAGTAGCCAACACTTCTCTTAGG....................................................................................................................GTTAACAACAAAGGATTCTCTGCATCCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277830" ref_strand="-" ref_description="SGN-E277830 [cLEL-5-E8](-)">
      <seq>gcacgagctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgcttgacgtcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25364" stop="27361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="56" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="170" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27061" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="392" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E277830" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277830" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGC-TGACGTCAAGCC</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTTGACGTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200167" ref_strand="+" ref_description="SGN-E200167 [cLEB-7-F5]">
      <seq>gcacgaggaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="48" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27044" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="366" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E200167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTT</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280218" ref_strand="-" ref_description="SGN-E280218 [cLEL-7-L23](-)">
      <seq>gcacgaggaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaacggattctctgacttctctggtttgagaacctcatcagctgttccatttggcaggaaaactaatgatgatctgctctctgttgctggcttacagacctctgctattggaggaaggacgagcaagaggatagtatctgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcctggtagaaaagactcacctcttgatgacattgccatcaatgacactggtggtgtcaagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="48" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27004" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="326" r_length="164" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E280218" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280218" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGC</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAACGGATTCTCTGACTTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGCAGGAAAACTAATGATGATCTGCTCTCTGTTGCTGGCTTACAGACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGACGAGCAAGAGGATAGTATCTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCCTGGTAGAAAAGACTCACCTCTTGATGACATTGCCATCAATGACACTGGTGGTGTCAAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290585" ref_strand="+" ref_description="SGN-E290585 [cLES-20-J7]">
      <seq>aacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25373" stop="27270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="154" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26970" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="284" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E290585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCA</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280217" ref_strand="-" ref_description="SGN-E280217 [cLEL-7-L21](-)">
      <seq>gcacgaggaacaatggctgctctctcagtagccaacacttctcttaaggttagcaacaacggattctctgacttctctggtttgagaacctcatcagctgttccatttggcatgaaaactaatgatgatctgttctctgttgctggcttacaaacctctgctattggaggaaggaagagcaagaggatagtatctgaggcatagttgaaagtggctatcactggatttggaagaattggaaggaacttcttgaggtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="48" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="162" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26939" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="261" r_length="99" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E280217" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGG</genome_strand>
        <mrna_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAGCAACAACGGATTCTCTGACTTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGCATGAAAACTAATGATGATCTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAGCAAGAGGATAGTATCTGAGGCATAGTTGAAAGTGGCTATCACTGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280126" ref_strand="-" ref_description="SGN-E280126 [cLEL-7-E17](-)">
      <seq>gaattcggcacgaggaataatggctgctctctcagtagccaacacttctcttaggttaacatcagaggattctctgaattctctggcttgagaacctcatcatctgttccattggtgaggaaaactaatgatgatttgttctctgttgctggcttacgaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25370" stop="27221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25673" g_stop="25712" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="54" r_length="39" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="168" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26921" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E280126" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280126" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25673" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGG</genome_strand>
        <mrna_strand>AATAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTT-AG....................................................................................................................GTTAACATCAGAGGATTCTCTGAATTCTCTGGCTTGAGAACCTCATCATCTGTTCCATTGGTGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACGAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282103" ref_strand="+" ref_description="SGN-E282103 [cLES-4-G1]">
      <seq>acaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25374" stop="27382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25674" g_stop="25712" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="153" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27082" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="395" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E282103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25674" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTC</genome_strand>
        <mrna_strand>ACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279696" ref_strand="+" ref_description="SGN-E279696 [cLER-5-F23]">
      <seq>aatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25376" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25676" g_stop="25712" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="151" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="453" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E279696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25676" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>AATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202823" ref_strand="+" ref_description="SGN-E202823 [cLEB-1-C8]">
      <seq>gcacgagctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25383" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25677" g_stop="25712" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="150" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="452" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E202823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25677" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GCACGAGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281519" ref_strand="-" ref_description="SGN-E281519 [cLEL-1-F5](-)">
      <seq>gcacgagctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25383" stop="27243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25677" g_stop="25712" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="150" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26943" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="253" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E281519" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281519" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25677" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATG</genome_strand>
        <mrna_strand>GCACGAGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738051" ref_strand="+" ref_description="SGN-E738051 [LC12AG08]">
      <seq>tggctgctctctcactatccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgtttctccaagccctcaggggaaactcaacggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25378" stop="28542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25678" g_stop="25712" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="451" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="696" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28242" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="879" r_length="183" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E738051" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25678" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCA</genome_strand>
        <mrna_strand>TGGCTGCTCTCTCACTATCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTTCTCCAAGCCCTCAGGGGAAACTCAACGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325652" ref_strand="+" ref_description="SGN-E325652 [cTOC-15-I17]">
      <seq>tggctgttctctcaatagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgaaaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagctgaaagtggctatcaatggatttggaagaattggaacgaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcgagcaagcctctcaccttctcgaatatgactccacccttggcatctttgatgctgacgtcaagccagttggcactgatggcatctctgtcgatagaaaaatcatccgagtcgactccaaccgtgaccctgtgaacctcccatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25378" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25678" g_stop="25712" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="451" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E325652" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25678" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>TGGCTGTTCTCTCAATAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAAAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGCTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAACGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCGAGCAAGCCTCTCACCTTCTCGAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCAGTTGGCACTGATGGCATCTCTGTCGATAGAAAAATCATCCGAGTCGACTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288517" ref_strand="+" ref_description="SGN-E288517 [cLES-8-D4]">
      <seq>ggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25379" stop="27399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25679" g_stop="25712" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="148" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27099" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="407" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E288517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25679" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCA</genome_strand>
        <mrna_strand>GGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283206" ref_strand="+" ref_description="SGN-E283206 [cLER-17-D6]">
      <seq>ggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25379" stop="27360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25679" g_stop="25712" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="148" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27060" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="368" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E283206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25679" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</genome_strand>
        <mrna_strand>GGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355575" ref_strand="+" ref_description="SGN-E355575 [cLHT-19-K6]">
      <seq>gctgctctctcagtagccaacacttctcttaaggctaacaacaaaggtttctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctcagctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25380" stop="27445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25680" g_stop="25712" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="147" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="449" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E355575" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25680" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</genome_strand>
        <mrna_strand>GCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GCTAACAACAAAGGTTTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371518" ref_strand="+" ref_description="SGN-E371518 [TUS-29-J24]">
      <seq>ctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgcctttgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25381" stop="28243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25681" g_stop="25712" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="146" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="448" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27942" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="666" r_length="218" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E371518" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25681" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCC-TTGCTCCT</genome_strand>
        <mrna_strand>CTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280647" ref_strand="+" ref_description="SGN-E280647 [cLER-1-L12]">
      <seq>ctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25381" stop="27409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25681" g_stop="25712" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="146" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27109" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="415" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E280647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25681" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGT</genome_strand>
        <mrna_strand>CTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737365" ref_strand="+" ref_description="SGN-E737365 [LC09CB02]">
      <seq>ctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25384" stop="28544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25684" g_stop="25712" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="143" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="445" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="690" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28244" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="875" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E737365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25684" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATT</genome_strand>
        <mrna_strand>CTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737590" ref_strand="+" ref_description="SGN-E737590 [LC10BH04]">
      <seq>ctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttcccacctcaactggtgctgctaaggctgtggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25384" stop="28509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25684" g_stop="25712" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="143" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="445" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="690" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28209" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="840" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E737590" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25684" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTG</genome_strand>
        <mrna_strand>CTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCCACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348125" ref_strand="+" ref_description="SGN-E348125 [cTOF-27-C5]">
      <seq>tctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgnccccggaaaaggtgacatccctactttatgtgttggtgtcaatgctgaactttacagccatgatgaacctatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25385" stop="28206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25685" g_stop="25712" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="142" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="444" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27906" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="625" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E348125" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25685" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATC</genome_strand>
        <mrna_strand>TCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGNCCCCGGAAAAGGTGACATCCCTACTTTATGTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203734" ref_strand="+" ref_description="SGN-E203734 [cLEC-17-M5]">
      <seq>tctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25385" stop="28050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25685" g_stop="25712" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="142" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="444" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27750" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="469" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E203734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25685" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATA</genome_strand>
        <mrna_strand>TCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365945" ref_strand="+" ref_description="SGN-E365945 [cLPT-11-L8]">
      <seq>tctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaaataatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaatcggaaggaacttcttgaggtgttggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactacaccctcggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25385" stop="27412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25685" g_stop="25712" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="142" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27112" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="414" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E365945" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25685" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTC</genome_strand>
        <mrna_strand>TCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAAATAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATCGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTACACCCTCGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291573" ref_strand="+" ref_description="SGN-E291573 [cLET-6-M2]">
      <seq>tcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25389" stop="28107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25689" g_stop="25712" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="138" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="440" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27807" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="522" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E291573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25689" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGA</genome_strand>
        <mrna_strand>TCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355955" ref_strand="+" ref_description="SGN-E355955 [cLHT-21-P5]">
      <seq>ccaacacttctcttaaggctaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctcagctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgttggcatggtagaaaagactctcctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25396" stop="28063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25696" g_stop="25712" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="131" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="433" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27763" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E355955" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25696" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAG</genome_strand>
        <mrna_strand>CCAACACTTCTCTTAAG....................................................................................................................GCTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGTTGGCATGGTAGAAAAGACTCTCCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324136" ref_strand="+" ref_description="SGN-E324136 [cTOC-4-G13]">
      <seq>ccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25396" stop="27360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25696" g_stop="25712" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="131" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27060" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="351" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E324136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25696" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</genome_strand>
        <mrna_strand>CCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287531" ref_strand="+" ref_description="SGN-E287531 [cLES-9-F3]">
      <seq>caacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgcgaccctgtgaacctcccatggggagaacttggagttgacttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25397" stop="28046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25697" g_stop="25712" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="130" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="432" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27746" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="453" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E287531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25697" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGT</genome_strand>
        <mrna_strand>CAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGCGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728139" ref_strand="+" ref_description="SGN-E728139 [LA16DD01]">
      <seq>cacttttcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgcttacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25700" g_stop="25712" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="127" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="429" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="674" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28120" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="735" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728139" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25700" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGA</genome_strand>
        <mrna_strand>CACTTTTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTTACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289872" ref_strand="+" ref_description="SGN-E289872 [cLET-9-N20]">
      <seq>cttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcacctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgacgcaaagttgaaagtggctatcaatggatttggaagaattggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="27222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25702" g_stop="25712" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="125" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26922" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="207" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E289872" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25702" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGA</genome_strand>
        <mrna_strand>CTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCACCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGACGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328137" ref_strand="+" ref_description="SGN-E328137 [cTOC-22-N14]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgancactactcactcttacaccggtgaccaaaggcttcttgatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="426" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="671" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28126" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="738" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E328137" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAG</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGANCACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328543" ref_strand="+" ref_description="SGN-E328543 [cTOC-23-I22]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagatatttggaattatncanggaacaatgacgactactcactcttacaccggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="426" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="671" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28107" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="719" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E328543" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACC</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGATATTTG.........................................................................................GAATTATNCANGGAACAATGACGACTACTCACTCTTACACCGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315929" ref_strand="+" ref_description="SGN-E315929 [cTOA-26-H23]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttctttgacagaaatttggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="426" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="671" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28060" g_stop="28065" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="677" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E315929" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTA</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTTGACAGAAATTTG.........................................................................................GAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328542" ref_strand="+" ref_description="SGN-E328542 [cTOC-23-I20]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgntggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="426" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27960" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="661" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E328542" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGAC</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGNTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315811" ref_strand="+" ref_description="SGN-E315811 [cTOA-26-H22]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacnactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaagggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccgaagccaagaaggtgctcatcaccgcccccggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="427" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27839" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="542" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E315811" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGAC-ACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAA-GGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAA</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACNACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGAAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315710" ref_strand="+" ref_description="SGN-E315710 [cTOA-26-I9]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="426" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27726" g_stop="27770" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="471" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E315710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327655" ref_strand="+" ref_description="SGN-E327655 [cTOC-20-H22]">
      <seq>ttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacagagatagtactgaggaaagtgaagtgctatcatggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25527" stop="27205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25712" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26841" g_stop="26906" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="182" r_length="58" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E327655" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.044" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25712"/>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="26906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTT</genome_strand>
        <mrna_strand>TTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAAC-AGA-GATAGT-ACTGAGG-AAAG-TG-AAGT-GCTATC-ATGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740967" ref_strand="+" ref_description="SGN-E740967 [LC23CG04]">
      <seq>cttatagtggctgctcatctcgtaggggggccttgtcctcaagtcaccccatagggttctgtgataatctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25526" stop="28475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25829" g_stop="25942" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="156" r_length="114" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="458" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="703" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28060" g_stop="28175" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="819" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E740967" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25829" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAACAAAGGATTCTCTGA-ATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCA</genome_strand>
        <mrna_strand>GTCACC-CCATAGGGTTCTGTGATAATCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277283" ref_strand="-" ref_description="SGN-E277283 [cLEL-3-B14](-)">
      <seq>tcggcacgagaattctctggtttgagaacctcatttgctgttccatttgggaggaaaactggtgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25550" stop="27374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25840" g_stop="25942" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26841" g_stop="27070" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="332" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E277283" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25840" e_stop="25942"/>
          <exon e_start="26841" e_stop="27070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCAC</genome_strand>
        <mrna_strand>TCGGCAC-GAGAATTCTCTGGTTTGAGAACCTCATTTGCTGTTCCATTTGGGAGGAAAACTGGTGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709044" ref_strand="+" ref_description="SGN-E709044 [FA42CB06]">
      <seq>agagggcaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagccctcaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25564" stop="28584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25860" g_stop="25942" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="385" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="630" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28060" g_stop="28284" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="855" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E709044" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25860" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACC</genome_strand>
        <mrna_strand>AGAGGGCAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCCTCAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243076" ref_strand="+" ref_description="SGN-E243076 [cLEF-1-N17]">
      <seq>tgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="25588" stop="28159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25888" g_stop="25942" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26841" g_stop="27142" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="357" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27726" g_stop="27859" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="491" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E243076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25888" e_stop="25942"/>
          <exon e_start="26841" e_stop="27142"/>
          <exon e_start="27726" e_stop="27859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATG</genome_strand>
        <mrna_strand>TGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706773" ref_strand="+" ref_description="SGN-E706773 [FA30DE09]">
      <seq>cgggtaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctccccagcctcaaggggaaactcaacggcattgcgctgcgtgttcccaccccctacgtctcggttgtggaccttgttgtgccagtcaccaagaagacatttgctgaggaagtgaatgctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26544" stop="28636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26844" g_stop="27142" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="544" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28336" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="821" r_length="277" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E706773" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26844" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATT</genome_strand>
        <mrna_strand>CGGGTAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCCAGCCTCAAGGGGAAACTCAACGGCATTGCGCTGCGTGTTCCCACCCCCTACGTCTCGGTTGTGGACCTTGTTGTGCCAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735335" ref_strand="+" ref_description="SGN-E735335 [LC01AD10]">
      <seq>ccgattaaaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26552" stop="28604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26850" g_stop="27142" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="537" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28304" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="782" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735335" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26850" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAG</genome_strand>
        <mrna_strand>CCGATTAA-AAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739848" ref_strand="+" ref_description="SGN-E739848 [LC19AE01]">
      <seq>ggattaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26551" stop="28693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26851" g_stop="27142" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="537" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28393" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="871" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E739848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26851" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACT</genome_strand>
        <mrna_strand>GGATTAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270214" ref_strand="+" ref_description="SGN-E270214 [cLEM-1-O20]">
      <seq>gaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttgtttgccctttnccaaanaaanaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccagccgtgaccctgtgaacctcccatggggagaacttggagttcacttagtcatagaaggtaccggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaagtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26552" stop="28275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26852" g_stop="27142" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="555" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28066" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="562" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E270214" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26852" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACC----TT---C--T--C----AAA----TATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTAT</genome_strand>
        <mrna_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTGTTTGCCCTTTNCCAAANAAANAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAGCCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTCACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAAGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728553" ref_strand="+" ref_description="SGN-E728553 [LA18AG08]">
      <seq>aagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataangacctcaatggcattctatctgtctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26553" stop="28683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26853" g_stop="27142" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="535" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28383" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="859" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728553" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26853" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTG</genome_strand>
        <mrna_strand>AAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAANGACCTCAATGGCATTCTATCTGTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728862" ref_strand="+" ref_description="SGN-E728862 [LA19AG08]">
      <seq>aagaacaagaggatagtaactgaggcaaagatgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtacaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcaaccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtacacagagaacgtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26553" stop="28546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26853" g_stop="27142" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="535" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28246" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="722" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728862" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26853" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGC</genome_strand>
        <mrna_strand>AAGAACAAGAGGATAGTAACTGAGGCAAAGATGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTACAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCAACCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTACACAGAGAACGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551142" ref_strand="+" ref_description="SGN-E551142 [TUS-55-H21]">
      <seq>ggccagntactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcnagggaacaatgacacctactcactcttacaccggtgaccaaaggcttcttgatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26563" stop="28426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26863" g_stop="27142" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="525" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28126" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="592" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E551142" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26863" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAG</genome_strand>
        <mrna_strand>GGCCAGNTACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCNAGGGAACAATGACACCTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253874" ref_strand="+" ref_description="SGN-E253874 [cLEG-28-N4]">
      <seq>gatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26564" stop="28399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26864" g_stop="27142" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="524" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28099" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="564" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E253874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26864" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACAC</genome_strand>
        <mrna_strand>GATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254703" ref_strand="+" ref_description="SGN-E254703 [cLEG-29-D4]">
      <seq>gatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26564" stop="28243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26864" g_stop="27142" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27943" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="497" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E254703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26864" e_stop="27142"/>
          <exon e_start="27726" e_stop="27943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTT</genome_strand>
        <mrna_strand>GATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285590" ref_strand="+" ref_description="SGN-E285590 [cLES-5-O19]">
      <seq>gtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggaagttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26568" stop="28159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26868" g_stop="27142" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27859" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="409" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26868" e_stop="27142"/>
          <exon e_start="27726" e_stop="27859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATG</genome_strand>
        <mrna_strand>GTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAAGTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318783" ref_strand="+" ref_description="SGN-E318783 [cTOB-11-B21]">
      <seq>tgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26573" stop="28397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26873" g_stop="27142" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="515" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28097" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="553" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E318783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26873" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTAC</genome_strand>
        <mrna_strand>TGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688954" ref_strand="+" ref_description="SGN-E688954 [t3_tus_55_H21]">
      <seq>ggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26576" stop="28259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26876" g_stop="27142" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27959" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="501" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E688954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26876" e_stop="27142"/>
          <exon e_start="27726" e_stop="27959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGA</genome_strand>
        <mrna_strand>GGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249550" ref_strand="+" ref_description="SGN-E249550 [cLEF-56-F6]">
      <seq>aaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26579" stop="28470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26879" g_stop="27142" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="509" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28170" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="620" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E249550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26879" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAG</genome_strand>
        <mrna_strand>AAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207506" ref_strand="+" ref_description="SGN-E207506 [cLEC-36-M14]">
      <seq>tgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26584" stop="28213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26884" g_stop="27142" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27913" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="447" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E207506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26884" e_stop="27142"/>
          <exon e_start="27726" e_stop="27913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</genome_strand>
        <mrna_strand>TGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282396" ref_strand="+" ref_description="SGN-E282396 [cLER-18-F19]">
      <seq>gaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26585" stop="28158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26885" g_stop="27142" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27858" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="391" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E282396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26885" e_stop="27142"/>
          <exon e_start="27726" e_stop="27858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTAT</genome_strand>
        <mrna_strand>GAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323228" ref_strand="+" ref_description="SGN-E323228 [cTOB-28-E18]">
      <seq>tggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaaatgccttgctcctttcgtcaaggctcttgaccagaaatttggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26590" stop="28275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26890" g_stop="27142" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="498" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28066" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="505" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E323228" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26890" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTAT</genome_strand>
        <mrna_strand>TGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAAATGCCTTGCTCCTTTCGTCAAGGCTCTTGACCAGAAATTTG.........................................................................................GAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322627" ref_strand="+" ref_description="SGN-E322627 [cTOB-26-M3]">
      <seq>tggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26590" stop="28239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26890" g_stop="27142" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27939" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="467" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E322627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26890" e_stop="27142"/>
          <exon e_start="27726" e_stop="27939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCT</genome_strand>
        <mrna_strand>TGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266979" ref_strand="+" ref_description="SGN-E266979 [cLEI-7-D20]">
      <seq>gatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaacgtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26602" stop="28437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26902" g_stop="27142" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="486" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28137" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="564" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E266979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26902" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATC</genome_strand>
        <mrna_strand>GATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAACGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211719" ref_strand="+" ref_description="SGN-E211719 [cLEC-66-G1]">
      <seq>tttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaagggtcttgaccagaaatttggaattatctagggaacaatgacaactactcactcttacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26604" stop="28401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26904" g_stop="27142" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="484" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28101" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="526" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E211719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26904" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCG</genome_strand>
        <mrna_strand>TTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGGTCTTGACCAGAAATTTG.........................................................................................GAATTATCTAGGGAACAATGACAACTACTCACTCTTACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206598" ref_strand="+" ref_description="SGN-E206598 [cLEC-31-I10]">
      <seq>tttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26604" stop="28214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26904" g_stop="27142" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27914" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="428" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E206598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26904" e_stop="27142"/>
          <exon e_start="27726" e_stop="27914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGC</genome_strand>
        <mrna_strand>TTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698333" ref_strand="+" ref_description="SGN-E698333 [FA05DH11]">
      <seq>ggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26620" stop="28678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26920" g_stop="27142" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="468" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28378" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="787" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E698333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26920" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGT</genome_strand>
        <mrna_strand>GGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735351" ref_strand="+" ref_description="SGN-E735351 [LC01AF11]">
      <seq>ccataagaggggcatggnagaaaagactcacctcttgatgtcctttccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26638" stop="28684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26927" g_stop="27142" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="460" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28384" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="785" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735351" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26927" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGA</genome_strand>
        <mrna_strand>CCATAAGAG-GGGCATGGNAGAAAAGACTCACCTCTTGATGTCCTTTCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319427" ref_strand="+" ref_description="SGN-E319427 [cTOB-15-P3]">
      <seq>cttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggttaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26627" stop="28259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26927" g_stop="27142" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27959" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="450" r_length="234" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E319427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26927" e_stop="27142"/>
          <exon e_start="27726" e_stop="27959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGA</genome_strand>
        <mrna_strand>CTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTTAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291831" ref_strand="+" ref_description="SGN-E291831 [cLET-7-G18]">
      <seq>cttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26627" stop="28202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26927" g_stop="27142" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27902" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="393" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E291831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26927" e_stop="27142"/>
          <exon e_start="27726" e_stop="27902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTAT</genome_strand>
        <mrna_strand>CTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298426" ref_strand="+" ref_description="SGN-E298426 [cLET-41-P2]">
      <seq>tagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26645" stop="28540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26945" g_stop="27142" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="443" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28240" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="624" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E298426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26945" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGG</genome_strand>
        <mrna_strand>TAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705939" ref_strand="+" ref_description="SGN-E705939 [FA28CC05]">
      <seq>ctcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26654" stop="28807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26954" g_stop="27142" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="434" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28507" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="882" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E705939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26954" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGG</genome_strand>
        <mrna_strand>CTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327142" ref_strand="+" ref_description="SGN-E327142 [cTOC-18-I2]">
      <seq>tcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcangggaaacatgacaactactcactcttacaccggtgaacaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26655" stop="28468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="27142" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="433" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28168" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="542" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E327142" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</genome_strand>
        <mrna_strand>TCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCANGGGAAACATGACAACTACTCACTCTTACACCGGTGAACAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329088" ref_strand="+" ref_description="SGN-E329088 [cTOC-24-N5]">
      <seq>tcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26655" stop="28241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26955" g_stop="27142" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27941" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="404" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E329088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26955" e_stop="27142"/>
          <exon e_start="27726" e_stop="27941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCC</genome_strand>
        <mrna_strand>TCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298506" ref_strand="+" ref_description="SGN-E298506 [cLET-41-I22]">
      <seq>gatgtcattgccatcaatcacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgcgggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26664" stop="28243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26964" g_stop="27142" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27943" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="397" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E298506" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26964" e_stop="27142"/>
          <exon e_start="27726" e_stop="27943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTT</genome_strand>
        <mrna_strand>GATGTCATTGCCATCAATCACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGCGGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736987" ref_strand="+" ref_description="SGN-E736987 [LC08AC08]">
      <seq>cattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaagttattgcttggtatgacaatgaatggggttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26669" stop="28812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26969" g_stop="27142" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="419" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28512" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="872" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E736987" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26969" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACT</genome_strand>
        <mrna_strand>CATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAAGTTATTGCTTGGTATGACAATGAATGGGGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252154" ref_strand="+" ref_description="SGN-E252154 [cLEG-8-M22]">
      <seq>ggtgtcaagctagcctctcaccttctcaaatatgactccaccgggggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaaactgccttgctactttcgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26691" stop="28250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26991" g_stop="27142" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27950" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="378" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E252154" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26991" e_stop="27142"/>
          <exon e_start="27726" e_stop="27950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACC-AACTGCCTTGCTCCTTTCGTCAA</genome_strand>
        <mrna_strand>GGTGTCAAGCTAGCCTCTCACCTTCTCAAATATGACTCCACCGGGGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAAACTGCCTTGCTACTTTCGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257112" ref_strand="+" ref_description="SGN-E257112 [cLEG-44-N16]">
      <seq>aagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtctagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26697" stop="28542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26997" g_stop="27142" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="391" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28242" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="574" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E257112" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26997" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCA</genome_strand>
        <mrna_strand>AAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCTAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212635" ref_strand="+" ref_description="SGN-E212635 [cLEC-73-C9]">
      <seq>aagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26701" stop="28731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27001" g_stop="27142" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="387" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28431" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="759" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E212635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27001" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAA</genome_strand>
        <mrna_strand>AAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253027" ref_strand="+" ref_description="SGN-E253027 [cLEG-25-N18]">
      <seq>aagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26701" stop="28513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27001" g_stop="27142" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="387" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28213" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="541" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E253027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27001" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCT</genome_strand>
        <mrna_strand>AAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251059" ref_strand="+" ref_description="SGN-E251059 [cLEG-17-I17]">
      <seq>tccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26727" stop="28472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27027" g_stop="27142" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="361" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28172" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="474" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E251059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27027" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTT</genome_strand>
        <mrna_strand>TCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288029" ref_strand="+" ref_description="SGN-E288029 [cLES-7-N21]">
      <seq>cccccgggctgcaggtgacgtcaagctggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26744" stop="28490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27035" g_stop="27142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="353" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28190" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="484" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E288029" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27035" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCT</genome_strand>
        <mrna_strand>CCCCCGGGCTGCAGGTGACGTCAAGCTGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262305" ref_strand="+" ref_description="SGN-E262305 [cLEG-56-H21]">
      <seq>tttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccgggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatgggttaaggttattgcttggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26742" stop="28794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27042" g_stop="27142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="346" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28494" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="783" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E262305" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27042" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCC-GGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACAT-GGTTAAGGTTATTGCTTGGTATG</genome_strand>
        <mrna_strand>TTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGGTTAAGGTTATTGCTTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285652" ref_strand="+" ref_description="SGN-E285652 [cLES-5-F21]">
      <seq>tttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26742" stop="28471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27042" g_stop="27142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="346" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28171" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="458" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27042" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGT</genome_strand>
        <mrna_strand>TTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284822" ref_strand="+" ref_description="SGN-E284822 [cLER-19-I15]">
      <seq>ggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagtttacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgcccttcgtgtttccaccccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26766" stop="28566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27066" g_stop="27142" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="322" r_length="245" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28266" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="529" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284822" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27066" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTA</genome_strand>
        <mrna_strand>GGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTTACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTTCGTGTTTCCACCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296402" ref_strand="+" ref_description="SGN-E296402 [cLET-19-D6]">
      <seq>ggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26775" stop="28258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27075" g_stop="27142" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27958" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="301" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E296402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27075" e_stop="27142"/>
          <exon e_start="27726" e_stop="27958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTG</genome_strand>
        <mrna_strand>GGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290501" ref_strand="+" ref_description="SGN-E290501 [cLES-20-I13]">
      <seq>tcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26785" stop="28572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27085" g_stop="27142" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="303" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28272" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="516" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E290501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27085" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCT</genome_strand>
        <mrna_strand>TCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298766" ref_strand="+" ref_description="SGN-E298766 [cLET-44-G3]">
      <seq>ggaaaagtcatccaagtggtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagctatgcctcttgtaccaccaactgccttgctcctttggtcaaggttcttgaccagaaatttggaattatgaagggaacaatgacaactactcactcttacaccggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26790" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27090" g_stop="27142" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="298" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28105" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="344" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E298766" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27090" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGA</genome_strand>
        <mrna_strand>GGAAAAGTCATCCAAGTGGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCTATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTGGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATGAAGGGAACAATGACAACTACTCACTCTTACACCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297943" ref_strand="+" ref_description="SGN-E297943 [cLET-38-H1]">
      <seq>caaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaagaagtgaatgctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="26813" stop="28635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27113" g_stop="27142" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28060" g_stop="28335" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="551" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297943" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27113" e_stop="27142"/>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCAT</genome_strand>
        <mrna_strand>CAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAAGAAGTGAATGCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727650" ref_strand="+" ref_description="SGN-E727650 [LA15BC09]">
      <seq>gaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaacctatacaattttccaccctgtgaaatctcaattcaataaaagtcccctttcctggtctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27425" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="260" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28720" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="921" r_length="661" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="929" polyA_stop="939"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E727650" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTT</genome_strand>
        <mrna_strand>AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACCTATACAATTTTCCACCCTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733608" ref_strand="+" ref_description="SGN-E733608 [LB10BH06]">
      <seq>gggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtaaattcttattcctttttgaaaattgtaatgagaactataacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27425" stop="28978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27726" g_stop="27970" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="248" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28678" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="867" r_length="619" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E733608" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27726" e_stop="27970"/>
          <exon e_start="28060" e_stop="28678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTT</genome_strand>
        <mrna_strand>AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAAATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297837" ref_strand="+" ref_description="SGN-E297837 [cLET-38-F4]">
      <seq>tggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27432" stop="28676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27732" g_stop="27970" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28376" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="556" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27732" e_stop="27970"/>
          <exon e_start="28060" e_stop="28376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCT</genome_strand>
        <mrna_strand>TGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295694" ref_strand="+" ref_description="SGN-E295694 [cLET-25-H4]">
      <seq>tggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgatnaagaactcaatggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27432" stop="28671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27732" g_stop="27970" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28371" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="551" r_length="312" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E295694" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27732" e_stop="27970"/>
          <exon e_start="28060" e_stop="28371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTC</genome_strand>
        <mrna_strand>TGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATNAAGAACTCAATGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284662" ref_strand="+" ref_description="SGN-E284662 [cLES-3-K17]">
      <seq>ttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27437" stop="28637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27737" g_stop="27970" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28337" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="512" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27737" e_stop="27970"/>
          <exon e_start="28060" e_stop="28337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTC</genome_strand>
        <mrna_strand>TTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711240" ref_strand="+" ref_description="SGN-E711240 [FB01BF07]">
      <seq>ccgtagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggctaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaacttatatttttttacccttgcttgcagattcttattcctttttgaacatcgtaatgagaactataaccattttcccccttgtgaaatcccaattcaataaaagtccccttttcttgtcctttaaaaaaaaanaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27458" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27758" g_stop="27970" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28726" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="881" r_length="668" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="883" polyA_stop="899"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E711240" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27758" e_stop="27970"/>
          <exon e_start="28060" e_stop="28726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCC-TTTCTTGTCTTT</genome_strand>
        <mrna_strand>CCGTAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGCTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAACTTATATTTTTTTACCCTTGCTTGCAGATTCTTATTCCTTTTTGAACATCGTAATGAGAACTATAACCATTTTCCCCCTTGTGAAATCCCAATTCAATAAAAGTCCCCTTTTCTTGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252606" ref_strand="+" ref_description="SGN-E252606 [cLEG-20-O6]">
      <seq>ggtttttgtagacagagaaggtgccggttaacacatccaggccggagccaagaaagtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaagctgaggctcttgttctcccaagcctcaaagggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcatagaggccgctgataaggaactcaatggcattttatctgtctgtgatgaaccactccgtgtcagttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27463" stop="28706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27762" g_stop="27970" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28406" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="557" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E252606" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27762" e_stop="27970"/>
          <exon e_start="28060" e_stop="28406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACT-CGTGTCAGTTGAC</genome_strand>
        <mrna_strand>GGTTTTTGTAGACAGAGAAGGTGCCGGTTAACACATCCAGGCCGGAGCCAAGAAAGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAAGCTGAGGCTCTTGTTCTCCCAAGCCTCAAAGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCATAGAGGCCGCTGATAAGGAACTCAATGGCATTTTATCTGTCTGTGATGAACCACTCCGTGTCAGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256798" ref_strand="+" ref_description="SGN-E256798 [cLEG-40-E24]">
      <seq>tttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctgttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27464" stop="28542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27764" g_stop="27970" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28242" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="390" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E256798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27764" e_stop="27970"/>
          <exon e_start="28060" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCA</genome_strand>
        <mrna_strand>TTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTGTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263957" ref_strand="+" ref_description="SGN-E263957 [cLEG-64-I18]">
      <seq>gtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27469" stop="28573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27769" g_stop="27970" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28273" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="416" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E263957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27769" e_stop="27970"/>
          <exon e_start="28060" e_stop="28273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTC</genome_strand>
        <mrna_strand>GTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716268" ref_strand="+" ref_description="SGN-E716268 [FB16CC12]">
      <seq>cagtgaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattccttttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27474" stop="28953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27774" g_stop="27970" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28653" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="790" r_length="593" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E716268" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27774" e_stop="27970"/>
          <exon e_start="28060" e_stop="28653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAA</genome_strand>
        <mrna_strand>CAGTGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCC-TTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732426" ref_strand="+" ref_description="SGN-E732426 [LB02AE12]">
      <seq>ggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27487" stop="29002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27787" g_stop="27970" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28702" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="827" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E732426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27787" e_stop="27970"/>
          <exon e_start="28060" e_stop="28702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCA</genome_strand>
        <mrna_strand>GGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294825" ref_strand="+" ref_description="SGN-E294825 [cLET-17-J14]">
      <seq>taaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27489" stop="28637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27789" g_stop="27970" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28337" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="460" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E294825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27789" e_stop="27970"/>
          <exon e_start="28060" e_stop="28337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTC</genome_strand>
        <mrna_strand>TAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270885" ref_strand="+" ref_description="SGN-E270885 [cLEM-6-F23]">
      <seq>acatccaggccggagccaagaaagtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcaatgacgtgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27494" stop="28729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27794" g_stop="27970" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28429" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="547" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E270885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27794" e_stop="27970"/>
          <exon e_start="28060" e_stop="28429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATC</genome_strand>
        <mrna_strand>ACATCCAGGCCGGAGCCAAGAAAGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAATGACGTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728484" ref_strand="-" ref_description="SGN-E728484 [LA17DH09]">
      <seq>gccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctctcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27508" stop="28997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27808" g_stop="27970" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28698" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="802" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E728484" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27808" e_stop="27970"/>
          <exon e_start="28060" e_stop="28698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAA</genome_strand>
        <mrna_strand>GCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTCTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735148" ref_strand="+" ref_description="SGN-E735148 [LB14CC07]">
      <seq>atccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27547" stop="74565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27847" g_stop="27970" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28697" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="762" r_length="638" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735148" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27847" e_stop="27970"/>
          <exon e_start="28060" e_stop="28697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCA</genome_strand>
        <mrna_strand>ATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548239" ref_strand="+" ref_description="SGN-E548239 [TUS-59-F23](-)">
      <seq>tccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcttcttgtaccaccaactgccttgctcctttggtcaaggttcttgaccagaaatttggtattatcaagggaacaatgacaactactcactcttacaccggtgaccataggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagctctgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaatgtctcggttgtggaccttgttgtgcaagtcaccaagaagacttttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgatttttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttcacaccttgtgaaatctcaattcaataaaagtcccttttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27548" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27848" g_stop="27970" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28731" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="796" r_length="673" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28732" i_stop="28891" i_length="160">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28892" g_stop="28903" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="808" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E548239" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27848" e_stop="27970"/>
          <exon e_start="28060" e_stop="28731"/>
          <exon e_start="28892" e_stop="28903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTC-CACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAGTA</genome_strand>
        <mrna_strand>TCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCTTCTTGTACCACCAACTGCCTTGCTCCTTTGGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GTATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCATAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCTCTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAATGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACTTTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTTTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCACACCTTGTGAAATCTCAATTCAATAAAAGTCCCTTTTCTTGTCTTTAAAAA................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285511" ref_strand="+" ref_description="SGN-E285511 [cLES-10-I23]">
      <seq>gtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggagctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtgtcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaagggtattgcttggtatgacaatgaatggggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27568" stop="28811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27868" g_stop="27970" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28511" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="555" r_length="452" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27868" e_stop="27970"/>
          <exon e_start="28060" e_stop="28511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTAC</genome_strand>
        <mrna_strand>GTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGAGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTGTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGGTATTGCTTGGTATGACAATGAATGGGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285515" ref_strand="+" ref_description="SGN-E285515 [cLES-10-K7]">
      <seq>gtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggagctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27568" stop="28771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27868" g_stop="27970" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28471" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="515" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E285515" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27868" e_stop="27970"/>
          <exon e_start="28060" e_stop="28471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACAT</genome_strand>
        <mrna_strand>GTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGAGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391359" ref_strand="+" ref_description="SGN-E391359 [TUS-47-N2](-)">
      <seq>catcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27603" stop="75086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27903" g_stop="27970" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28731" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="740" r_length="672" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28732" i_stop="28889" i_length="158">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28890" g_stop="28903" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="754" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E391359" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27903" e_stop="27970"/>
          <exon e_start="28060" e_stop="28731"/>
          <exon e_start="28890" e_stop="28903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAGTA</genome_strand>
        <mrna_strand>CATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA..............................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693350" ref_strand="+" ref_description="SGN-E693350 [LH_Ea01B12](-)">
      <seq>catcagcaatccctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagagacgtgtcatcaactgttgattcttcactccccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgccattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttacccttgcttgtagattcttattcctttttaaggattgtaatgagaactataacaattttccaccttttaaatggcaattcaataaaagtcccctttctttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27603" stop="75080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27903" g_stop="27970" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28739" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="746" r_length="678" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E693350" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27903" e_stop="27970"/>
          <exon e_start="28060" e_stop="28739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTT</genome_strand>
        <mrna_strand>CATCAGCAATCCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGAGACGTGTCATCAACTGTTGATTCTTCACTCCCCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGCCATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTACCCTTGCTTGTAGATTCTTATTCCTTTTTAAGGATTGTAATGAGAACTATAACAATTTTCCACCTT-TTAAATGGCAATTCAATAAAAGTCCCCTTTCTT-TCTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340621" ref_strand="+" ref_description="SGN-E340621 [cTOF-1-G4]">
      <seq>agcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataancattttccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27607" stop="28982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27907" g_stop="27970" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28690" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="695" r_length="631" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E340621" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27907" e_stop="27970"/>
          <exon e_start="28060" e_stop="28690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGA</genome_strand>
        <mrna_strand>AGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAANCATTTTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732515" ref_strand="+" ref_description="SGN-E732515 [LB02BE08]">
      <seq>gcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27613" stop="29025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27913" g_stop="27970" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28725" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="724" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E732515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27913" e_stop="27970"/>
          <exon e_start="28060" e_stop="28725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTT</genome_strand>
        <mrna_strand>GCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733926" ref_strand="+" ref_description="SGN-E733926 [LB11BC08]">
      <seq>cttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27617" stop="29008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27917" g_stop="27970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28708" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="703" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E733926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27917" e_stop="27970"/>
          <exon e_start="28060" e_stop="28708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAA</genome_strand>
        <mrna_strand>CTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204350" ref_strand="+" ref_description="SGN-E204350 [cLEC-13-G16]">
      <seq>cttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagagaatgctgcattcacagaggccgctgataaggaactcaatggcattctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27617" stop="28675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27917" g_stop="27970" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28375" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="370" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E204350" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27917" e_stop="27970"/>
          <exon e_start="28060" e_stop="28375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATC</genome_strand>
        <mrna_strand>CTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGAGAATGCTGCATTCACAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733828" ref_strand="+" ref_description="SGN-E733828 [LB11AC03]">
      <seq>cacctactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttanaaaaannnnannnnnnnnnanaaaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27624" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27924" g_stop="27970" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28731" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="719" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E733828" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27924" e_stop="27970"/>
          <exon e_start="28060" e_stop="28731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA</genome_strand>
        <mrna_strand>CACCTACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTANAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297626" ref_strand="+" ref_description="SGN-E297626 [cLET-28-O13]">
      <seq>tgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatattttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27757" stop="28920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27957" g_stop="27970" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28620" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="575" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27957" e_stop="27970"/>
          <exon e_start="28060" e_stop="28620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTA</genome_strand>
        <mrna_strand>TGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371517" ref_strand="+" ref_description="SGN-E371517 [TUS-29-J24](-)">
      <seq>aatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27757" stop="29008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27965" g_stop="27970" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28060" g_stop="28708" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="655" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E371517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27965" e_stop="27970"/>
          <exon e_start="28060" e_stop="28708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAA</genome_strand>
        <mrna_strand>AATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318882" ref_strand="+" ref_description="SGN-E318882 [cTOB-11-K21]">
      <seq>ggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcacagaggccgctgataaggaactcaatggcattctatctgtctgagatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttatcgcttggtatgacaatgaatggggatactcacaaagggttgttgatcttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27759" stop="28837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28059" g_stop="28537" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E318882" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28059" e_stop="28537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGA</genome_strand>
        <mrna_strand>GGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCACAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGAGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATCGCTTGGTATGACAATGAATGGGGATACTCACAAAGGGTTGTTGATCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733400" ref_strand="+" ref_description="SGN-E733400 [LB04DD03]">
      <seq>cgataactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27779" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28078" g_stop="28736" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E733400" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28078" e_stop="28736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCG</genome_strand>
        <mrna_strand>CGATAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348483" ref_strand="+" ref_description="SGN-E348483 [cTOF-30-G18]">
      <seq>gacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27779" stop="75080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28079" g_stop="28731" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28891" i_length="160">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28892" g_stop="28900" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="662" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E348483" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28079" e_stop="28731"/>
          <exon e_start="28892" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>GACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348618" ref_strand="+" ref_description="SGN-E348618 [cTOF-30-G22]">
      <seq>gacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27779" stop="75080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28079" g_stop="28731" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28891" i_length="160">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28892" g_stop="28900" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="662" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E348618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28079" e_stop="28731"/>
          <exon e_start="28892" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>GACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318755" ref_strand="+" ref_description="SGN-E318755 [cTOB-11-E11]">
      <seq>aactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggatgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttacggtgcagcgacctgtcatcaactgatgattcttcactcaccatgggcatgggagatgacatggttaaggatattgcttggtatgacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27782" stop="28799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28082" g_stop="28499" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E318755" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28082" e_stop="28499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAAT</genome_strand>
        <mrna_strand>AACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGATGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTACGGTGCAGCGACCTGTCATCAACTGATGATTCTTCACTCACCATGGGCATGGGAGATGACATGGTTAAGGATATTGCTTGGTATGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735088" ref_strand="+" ref_description="SGN-E735088 [LB14BF04]">
      <seq>cttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27813" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28113" g_stop="28726" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="629"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28113" e_stop="28726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</genome_strand>
        <mrna_strand>CTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279454" ref_strand="+" ref_description="SGN-E279454 [cLER-11-L12]">
      <seq>ttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggagggcaatgccgttgagtttccccttgaggcttgggagaacaagagccacagccttagcagcaccagttgaggttggaactatgttcagtgctgcagctcgtgcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28972" stop="27841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28672" g_stop="28141" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E279454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28672" e_stop="28141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</genome_strand>
        <mrna_strand>TTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286945" ref_strand="+" ref_description="SGN-E286945 [cLES-6-K9]">
      <seq>gagttttttttttttttttttttttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaagggccacaaccgagacgttaggggtgggaacacggagggcaatgccgttgagtttccccttgaggcttgggagaacaagagccacagccttagcagcaccagttgaggttggaactatgttcagtgctgcagctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75093" stop="27847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29323" g_stop="29300" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29299" i_stop="28732" i_length="568">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28147" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="609" r_length="585" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E286945" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29323" e_stop="29300"/>
          <exon e_start="28731" e_stop="28147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTG</genome_strand>
        <mrna_strand>GAGTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGGCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735231" ref_strand="+" ref_description="SGN-E735231 [LB14DB06]">
      <seq>gatctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcnntaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27850" stop="29008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28150" g_stop="28708" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="579"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E735231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28150" e_stop="28708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAA</genome_strand>
        <mrna_strand>GATCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCNNTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372443" ref_strand="-" ref_description="SGN-E372443 [TUS-32-K24](-)">
      <seq>ttttttttttttttttttttttttttttttttaaaaaacaaaaaaggggacttttattgaattgaaatttcacaagggggaaaattgttatatttctcattacaattttcaaaaaggaataaaaatctacaaccaaggttaaaaaaatataaattaacccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaaaatcaacaaccctttgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaaaaatcaacagttgatgacccgtcactgccccggaagtcaactgacacaagtggttcatcacaaacagataaaatgccattgagttccttatcagcggcctttctgaatgcagcattcacttcctcagcaaatgtctttttggtgacttgcacaacaaggtccacaaccgaaacgttaggggtgggaacacggagggcaatgccgttgattttccccttgaggcttgggagaacaagacccacagccttagcagcaccagttgaggttggaactatgttcagtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75097" stop="27855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28920" g_stop="28892" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.621"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28891" i_stop="28732" i_length="160">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28155" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="605" r_length="576" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E372443" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372443" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28920" e_stop="28892"/>
          <exon e_start="28731" e_stop="28155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................TTTA-AAAAACAAAAAAGGGGACTTTTATTGAATTGAAATTTCACAAGGGGGAAAATTGTTATATTTCTCATTACAATTTTCAAAAAGGAATAAAAATCTACAACCAAGGTTAAAAAAATATAAATTAACCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAAATCAACAACCCTTTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAAAATCAACAGTTGATGACCCGTCACTGCCCCGGAAGTCAACTGACACAAGTGGTTCATCACAAACAGATAAAATGCCATTGAGTTCCTTATCAGCGGCCTTTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTTTTGGTGACTTGCACAACAAGGTCCACAACCGAAACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGATTTTCCCCTTGAGGCTTGGGAGAACAAGACCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740157" ref_strand="+" ref_description="SGN-E740157 [LC20BC11]">
      <seq>agcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27857" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28157" g_stop="28726" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="582"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E740157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28157" e_stop="28726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</genome_strand>
        <mrna_strand>AGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289875" ref_strand="+" ref_description="SGN-E289875 [cLET-9-P4]">
      <seq>ttagcagcaccagttgaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtgctactaaatagtggcttaatttatatttttttaaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27889" stop="28927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28179" g_stop="28627" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E289875" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28179" e_stop="28627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGC</genome_strand>
        <mrna_strand>TTAGCAGCACCAGTTGAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTGCTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287400" ref_strand="+" ref_description="SGN-E287400 [cLES-15-K20]">
      <seq>ggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27902" stop="28932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28202" g_stop="28632" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E287400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28202" e_stop="28632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTA</genome_strand>
        <mrna_strand>GGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277464" ref_strand="+" ref_description="SGN-E277464 [cLER-3-C10]">
      <seq>ttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggagggcaatgccgttgagtttccccttgaggcttgggagaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="29008" stop="27906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28708" g_stop="28206" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E277464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28708" e_stop="28206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAG</genome_strand>
        <mrna_strand>TTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291969" ref_strand="+" ref_description="SGN-E291969 [cLET-7-K2]">
      <seq>ttttttttttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggagggcaatgccgttgagtttccccttgaggcttgggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75080" stop="27909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28900" g_stop="28892" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28891" i_stop="28732" i_length="160">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28209" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="532" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E291969" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28900" e_stop="28892"/>
          <exon e_start="28731" e_stop="28209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAAC</genome_strand>
        <mrna_strand>TTTTTTTTT................................................................................................................................................................TTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282185" ref_strand="+" ref_description="SGN-E282185 [cLES-4-J22]">
      <seq>ttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggaaggcaatgccgttgagtttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="29031" stop="27925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28732" g_stop="28225" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E282185" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28732" e_stop="28225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCT</genome_strand>
        <mrna_strand>TTTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAAGGCAATGCCGTTGAGTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282878" ref_strand="+" ref_description="SGN-E282878 [cLER-15-N5]">
      <seq>tttttttttttttttttttttttttttttcacaagggggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggagggcaatgccgttgagtttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="27926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29852" g_stop="29843" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28709" i_length="1134">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28708" g_stop="28226" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="493" r_length="483" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E282878" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29852" e_stop="29843"/>
          <exon e_start="28708" e_stop="28226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCC</genome_strand>
        <mrna_strand>TTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTCACAAGGGGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732695" ref_strand="+" ref_description="SGN-E732695 [LB02DE08]">
      <seq>actgcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantccgggggggggggcccccccccccccccccccaaaggggggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27937" stop="49276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28237" g_stop="28731" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28884" i_length="153">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28885" g_stop="28938" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="549" r_length="54" r_score="0.481"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28939" i_stop="29268" i_length="330">
            <donor d_prob="0.000" d_score="0.50"/>
            <acceptor a_prob="0.557" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29269" g_stop="29320" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="601" r_length="52" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E732695" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28237" e_stop="28731"/>
          <exon e_start="28885" e_stop="28938"/>
          <exon e_start="29269" e_stop="29320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAAGTAGGACAAGTAAATTGAAACGGAGGGGAGTACAAGATATTCTGTAGTTCAACATCATGTAATTGGTGATAGGTTGCTCGAACTCTTCAACAACATGCAAGGTGTGTGTCGGATCCTCCAAAAGTTTATGTATGTTTGAAGGATCTGACACATGAGCGACAACATTTTTGGAGGATTCGAGTAACATAGATTAGGTGATGAATGGACTAAATACTGAAGCAAAAACTTATTATACTCATAGGTAACTACATTTTTGGAGGATTCGAGTAACATAGATTAATGTGCTCCAGAAGTTTTTTGTGATTCCAAAAGAGCTTCCTTGATAGAGTACAATTGGGAAACAGTTTCAGTGATGTTCATTCTTTCAGCTCCAGAATATGCAGAACAAGCAACCCCGACTCGAAGAACAGAAACAAGAAA</genome_strand>
        <mrna_strand>ACTGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................NTCCGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCAAAGGGGGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298933" ref_strand="+" ref_description="SGN-E298933 [cLET-42-O15]">
      <seq>acaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaaggtccacaaccgagacgttaggggtgggaacacggagggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="29022" stop="27942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28722" g_stop="28242" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E298933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28722" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAAT</genome_strand>
        <mrna_strand>ACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223046" ref_strand="+" ref_description="SGN-E223046 [cLEL-14-K22](-)">
      <seq>cacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccccctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27959" stop="74566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28259" g_stop="28707" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E223046" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28259" e_stop="28707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAA</genome_strand>
        <mrna_strand>CACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCCCCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239036" ref_strand="+" ref_description="SGN-E239036 [cLEL-9-E4](-)">
      <seq>ctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27971" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28271" g_stop="28731" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28889" g_stop="28900" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="473" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E239036" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28271" e_stop="28731"/>
          <exon e_start="28889" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>CTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.............................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221082" ref_strand="+" ref_description="SGN-E221082 [cLEL-22-P17](-)">
      <seq>gtggaccttgttgtgcaagtcaccaagaagacatttgtgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27978" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28278" g_stop="28731" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28889" g_stop="28900" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="465" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E221082" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28278" e_stop="28731"/>
          <exon e_start="28889" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>GTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTG-TGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.............................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217863" ref_strand="+" ref_description="SGN-E217863 [cLEL-23-H18](-)">
      <seq>accttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27982" stop="74566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28282" g_stop="28698" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E217863" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28282" e_stop="28698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAA</genome_strand>
        <mrna_strand>ACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265239" ref_strand="+" ref_description="SGN-E265239 [cLEI-2-P12]">
      <seq>ttttttttttttttttttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcctcagcaaatgtcttcttggtgacttgcacaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75089" stop="27984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29859" g_stop="29843" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28284" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="465" r_length="448" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E265239" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29859" e_stop="29843"/>
          <exon e_start="28731" e_stop="28284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298696" ref_strand="+" ref_description="SGN-E298696 [cLET-44-J1]">
      <seq>ttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgatgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtgatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27988" stop="29020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28288" g_stop="28720" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E298696" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28288" e_stop="28720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTT</genome_strand>
        <mrna_strand>TTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGATGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTGATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284217" ref_strand="+" ref_description="SGN-E284217 [cLER-16-E20]">
      <seq>ttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27988" stop="28992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28288" g_stop="28699" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E284217" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28288" e_stop="28699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAAT</genome_strand>
        <mrna_strand>TTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278761" ref_strand="+" ref_description="SGN-E278761 [cLER-2-I6]">
      <seq>caccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttataaaaaaaaaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="27998" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28298" g_stop="28731" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="460"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E278761" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28298" e_stop="28731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA</genome_strand>
        <mrna_strand>CACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224530" ref_strand="+" ref_description="SGN-E224530 [cLEL-27-G15](-)">
      <seq>gaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28004" stop="74566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28304" g_stop="28705" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E224530" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28304" e_stop="28705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATA</genome_strand>
        <mrna_strand>GAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291348" ref_strand="+" ref_description="SGN-E291348 [cLET-2-D13]">
      <seq>ttttttttttttttaaagacaagaaaggggacttttattgaattgagatttcacaagggggaaaattgctatagctctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaccaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75080" stop="28019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28900" g_stop="28892" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28891" i_stop="28732" i_length="160">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28319" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="422" r_length="413" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E291348" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28900" e_stop="28892"/>
          <exon e_start="28731" e_stop="28319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCC</genome_strand>
        <mrna_strand>TTTTTTTTT................................................................................................................................................................TTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGGGGAAAATTGCTATAGCTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCACCAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222100" ref_strand="+" ref_description="SGN-E222100 [cLEL-36-A22](-)">
      <seq>gtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccacttcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28023" stop="74566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28323" g_stop="28698" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E222100" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28323" e_stop="28698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACT-CGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAA</genome_strand>
        <mrna_strand>GTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216991" ref_strand="-" ref_description="SGN-E216991 [cLEL-1-A18](-)">
      <seq>ttttttttttttttttttttttaagacaagaaaggggacttttattgaatggggatttcacaagggggaaaatgggtatagttctcattacaattttcaaaaaggaataagaatctacaagcaagggtaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattggcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="28024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29858" g_stop="29843" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28324" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="424" r_length="408" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E216991" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29858" e_stop="29843"/>
          <exon e_start="28731" e_stop="28324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAGACAAGAAAGGGGACTTTTATTGAATGGGGATTTCACAAGGGGGAAAATGGGTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGGTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGGCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226809" ref_strand="-" ref_description="SGN-E226809 [cLEL-26-D23](-)">
      <seq>tttttttttttttttttaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgcagcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75084" stop="28024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29853" g_stop="29843" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28324" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="419" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E226809" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226809" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29853" e_stop="29843"/>
          <exon e_start="28731" e_stop="28324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223271" ref_strand="+" ref_description="SGN-E223271 [cLEL-14-K22](-)">
      <seq>tgctgcattcaaagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacaaagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtgctactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagacctataacaattttccacctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28028" stop="74566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28328" g_stop="28707" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E223271" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28328" e_stop="28707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAA</genome_strand>
        <mrna_strand>TGCTGCATTCAAAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAAAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTGCTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGACCTATAACAATTTTCCACCTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223168" ref_strand="+" ref_description="SGN-E223168 [cLEL-14-J17](-)">
      <seq>gctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28029" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28329" g_stop="28731" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28889" g_stop="28900" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="415" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E223168" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28329" e_stop="28731"/>
          <exon e_start="28889" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>GCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.............................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226672" ref_strand="-" ref_description="SGN-E226672 [cLEL-26-D23](-)">
      <seq>tttttttttttttttttaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcagcggcctctctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75084" stop="28032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29853" g_stop="29843" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28332" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="411" r_length="400" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E226672" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226672" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29853" e_stop="29843"/>
          <exon e_start="28731" e_stop="28332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGC</genome_strand>
        <mrna_strand>TTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397305" ref_strand="+" ref_description="SGN-E397305 [TUS-45-K20]">
      <seq>ttcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28035" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28335" g_stop="28731" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E397305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28335" e_stop="28731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA</genome_strand>
        <mrna_strand>TTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297123" ref_strand="+" ref_description="SGN-E297123 [cLET-29-A23]">
      <seq>tcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28036" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28336" g_stop="28731" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28336" e_stop="28731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA</genome_strand>
        <mrna_strand>TCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297257" ref_strand="+" ref_description="SGN-E297257 [cLET-29-A22]">
      <seq>tcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28036" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28336" g_stop="28731" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E297257" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28336" e_stop="28731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA</genome_strand>
        <mrna_strand>TCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279862" ref_strand="+" ref_description="SGN-E279862 [cLER-8-A5]">
      <seq>tcgagttttttttttttttttttggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactgacacgagtggttcatcacagacagatagaatgccattgagttccttatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127290" stop="28048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28816" g_stop="28796" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.476"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28795" i_stop="28684" i_length="112">
            <donor d_prob="0.772" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28683" g_stop="28348" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="357" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E279862" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28816" e_stop="28796"/>
          <exon e_start="28683" e_stop="28348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAG</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTT................................................................................................................TTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224750" ref_strand="+" ref_description="SGN-E224750 [cLEL-27-G15](-)">
      <seq>aggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactccccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttacccttgcttgtagattcttattcctttttgaaaattgtaatcagaactataacaattttcccaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28054" stop="28984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28354" g_stop="28681" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="352"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E224750" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28354" e_stop="28681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCC</genome_strand>
        <mrna_strand>AGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCCCCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTACCCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATCAGAACTATAACAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293080" ref_strand="+" ref_description="SGN-E293080 [cLET-12-I2]">
      <seq>tcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgacaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28060" stop="75080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28360" g_stop="28739" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E293080" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28360" e_stop="28739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTT</genome_strand>
        <mrna_strand>TCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGACAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289271" ref_strand="+" ref_description="SGN-E289271 [cLES-18-M12]">
      <seq>tcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28060" stop="28897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28360" g_stop="28597" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E289271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28360" e_stop="28597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATA</genome_strand>
        <mrna_strand>TCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278384" ref_strand="+" ref_description="SGN-E278384 [cLEL-2-D4]">
      <seq>tttttttttttttttttttcaagaaaggggacttttattgaattgagatttcccaccgtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgacacgtcactgcaccggaagtcaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="28098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28909" g_stop="28892" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28891" i_stop="28723" i_length="169">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28722" g_stop="28398" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="343" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E278384" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28909" e_stop="28892"/>
          <exon e_start="28722" e_stop="28398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT.........................................................................................................................................................................TCAAGAAAGGGGACTTTTATTGAATTGAGATTTCCCACCGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221401" ref_strand="+" ref_description="SGN-E221401 [cLEL-22-P17](-)">
      <seq>tgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28123" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28423" g_stop="28731" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28889" g_stop="28900" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="321" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E221401" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28423" e_stop="28731"/>
          <exon e_start="28889" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>TGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.............................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355947" ref_strand="+" ref_description="SGN-E355947 [cLHT-21-L9]">
      <seq>tttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactattgagtagtagtgcttgattttattgtcatgtgtcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaacagttgatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="29031" stop="28123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28733" g_stop="28423" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E355947" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28733" e_stop="28423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACA</genome_strand>
        <mrna_strand>TTTTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTGAGTAGTAGTGCTTGATTTTATTGTCATGTGTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238688" ref_strand="+" ref_description="SGN-E238688 [cLEL-9-E4](-)">
      <seq>tcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="28125" stop="75084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28425" g_stop="28731" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28889" g_stop="28900" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="319" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E238688" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28425" e_stop="28731"/>
          <exon e_start="28889" e_stop="28900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTATATGTTGCAAAGGAGCTCTTTGAAGACTTATTCCAGATAGGTAGAATGTACCAAAATGTTCTTCAATCTCGTGCATGTCATGTGGAAAGTTTAAATTAGAGAGTTGTCAAAACAAGAAAGAGACTTTCATTTGCTGAAACGGACTACAAAAAGAAA</genome_strand>
        <mrna_strand>TCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTAAAAA.............................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230176" ref_strand="-" ref_description="SGN-E230176 [cLEL-33-G12](-)">
      <seq>tttttttttttttttttgtataaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccccattcattgtcataccaagcaataaccttaaccatgtcatctcccatgaccatggtgagtgaagaatcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127285" stop="28133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29858" g_stop="29843" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28433" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="315" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E230176" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29858" e_stop="29843"/>
          <exon e_start="28731" e_stop="28433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282465" ref_strand="+" ref_description="SGN-E282465 [cLER-18-K19]">
      <seq>tttttttttttttttttttttttttttttttttttttttttaaaacaagaaaggggacttttattgaattgagatttcacaagggggaaaattgttatagttctcattacaattttcaaaaaggaataaaaatctccaagccaggttaaaaaaatataaattaagcccctttttagtagtaccgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaaaatcaacaaccctttgtgagtaaccccattcattgtcataccaagcaataaccttaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75097" stop="28171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28920" g_stop="28885" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28884" i_stop="28732" i_length="153">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28471" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="296" r_length="260" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E282465" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28920" e_stop="28885"/>
          <exon e_start="28731" e_stop="28471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................TTTTTAAA-ACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGGGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAAAATCTCCAAGCCAGGTTAAAAAAATATAAATTAAGCCCCTTTTTAGTAGTACCGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAAATCAACAACCCTTTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211355" ref_strand="+" ref_description="SGN-E211355 [cLEC-70-N4]">
      <seq>ttttttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaagatcaacaaccctctgtgagtaaccgccccccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="29008" stop="28204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28712" g_stop="28516" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E211355" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28712" e_stop="28516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCT</genome_strand>
        <mrna_strand>TTTTTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548566" ref_strand="-" ref_description="SGN-E548566 [TUS-62-G4]">
      <seq>ttttttttttttttttttttttacacagaagcggactgtataaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="28229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30483" g_stop="30463" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30462" i_stop="28747" i_length="1716">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28746" g_stop="28529" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="239" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E548566" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548566" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30483" e_stop="30463"/>
          <exon e_start="28746" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATCTCTGTTGTCTTTGGTATACTAGGACTTGGTATGCTTGTCACTTTACTAATTTGTTTCTTGTTAAAGAAACCGAAAAGTGTGCCTGTTTCAAGTTCATTGGGTGAGTCTCTCATAAATGTGTCTTACCGAAGTTTGCTTCAAGCTACTAATGGATTCTCTGAAGACAACTTGATTGGTGCTGGTAGCTATGGATCTGTTTATAAAGGAACTCTCGATGGAGGAATAGTTGTCGCGGTGAAAGTGCTAAACCTCTCGCGACATGGAGCTTCCAAAAGCTTTATGGCTGAATGTGAAGTCTTGAGAAACACTAGACATCGGAATTTGGTCAAGGTTCTCTCAGCATGTTCAGGAGTTGACTATCGAGGGAACAATTTCAAGGCTTTGGTTTACGAGTTTATGGTTAATGGAAGCCTCGAAGACTGGTTGCATCCTCATCCAAGTGAAGATACAAGTCAGGCAGCAGAAACAAAAAAGTTGAATATTCTTCAAAGGCTCAACATTGCTATAGATGTTGCTTCTGCAATCGATTATCTTCATCTCCACTGCGAGACTCCGATAGTTCACTGTGATCTCAAGCCAAGCAACATTCTTCTAGACAACCAATTGGTCGGGCACATTGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541538" ref_strand="-" ref_description="SGN-E541538 [TUS-62-G4](-)">
      <seq>ttttttttttttttttttttttaacagaagcggactgtataaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75089" stop="28229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28913" g_stop="28892" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28891" i_stop="28745" i_length="147">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28744" g_stop="28529" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="238" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E541538" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541538" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28913" e_stop="28892"/>
          <exon e_start="28744" e_stop="28529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................AACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295029" ref_strand="-" ref_description="SGN-E295029 [cLET-40-E19]">
      <seq>ttttttttttttttttttttttatacagaagcggactgtataaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttattttattttcatgtttcatttccactggtttgcaacaatgtcagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="74566" stop="28230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30483" g_stop="30463" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30462" i_stop="28747" i_length="1716">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28746" g_stop="28530" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="238" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E295029" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295029" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30483" e_stop="30463"/>
          <exon e_start="28746" e_stop="28530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATCTCTGTTGTCTTTGGTATACTAGGACTTGGTATGCTTGTCACTTTACTAATTTGTTTCTTGTTAAAGAAACCGAAAAGTGTGCCTGTTTCAAGTTCATTGGGTGAGTCTCTCATAAATGTGTCTTACCGAAGTTTGCTTCAAGCTACTAATGGATTCTCTGAAGACAACTTGATTGGTGCTGGTAGCTATGGATCTGTTTATAAAGGAACTCTCGATGGAGGAATAGTTGTCGCGGTGAAAGTGCTAAACCTCTCGCGACATGGAGCTTCCAAAAGCTTTATGGCTGAATGTGAAGTCTTGAGAAACACTAGACATCGGAATTTGGTCAAGGTTCTCTCAGCATGTTCAGGAGTTGACTATCGAGGGAACAATTTCAAGGCTTTGGTTTACGAGTTTATGGTTAATGGAAGCCTCGAAGACTGGTTGCATCCTCATCCAAGTGAAGATACAAGTCAGGCAGCAGAAACAAAAAAGTTGAATATTCTTCAAAGGCTCAACATTGCTATAGATGTTGCTTCTGCAATCGATTATCTTCATCTCCACTGCGAGACTCCGATAGTTCACTGTGATCTCAAGCCAAGCAACATTCTTCTAGACAACCAATTGGTCGGGCACATTGGTGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286072" ref_strand="+" ref_description="SGN-E286072 [cLES-13-C24]">
      <seq>ttttttttttttttttttaaagacaagaaaggggacttttattgaattgagatttcacaaggtggaaaattgttatagttctcattacaattttcaaaaaggaataagaatctacaagcaaggttaaaaaaatataaattaagccactatttagtagtactgctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="75085" stop="28277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29855" g_stop="29843" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.615"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111">
            <donor d_prob="0.911" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28731" g_stop="28577" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="168" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E286072" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29855" e_stop="29843"/>
          <exon e_start="28731" e_stop="28577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGGTTTGGCAAAGTTCCTTCAACCAACTGCACAAAATTCTTCTATTTCAGAAGGAAGCTCTGCTCTCGTTAGAGGAACAATCGGTTACACTGCTCCAGGTAACAATTAATACATAAACAAACACTCGAACGCCCTTTTTTACTTGAAAATGATATATTCATAGCAAAATCAAGTCTTAATTGTTACACATATACTGCCATTACTTCAATAAAATCAAGTCATTGTAAGTTATGTTCCTATTAGGAAAGTTATTGTCCTTGTCTTATTACATCTTTTGTGAATTTTAGAATATGGGATCGGAAGTGAGCTATCGCCTTGTGGTGATGTGTACAGCTTTGGGATCCTTTTACTAGAAATGTTCACCGGAAAAAGGCCTACAGATGGAATGTTTAAGGATGGTTTAGACCTTCCAAGTTTCGCTAAACATGCATTGCTTTATGGAGCCATGGAAGTCATAGATCCATCCCTTATTTATGGAACTGAAGAAGATGAGCAAGGTAAAAGCACAAATATCTATCAGAATAAGGAGTTTCTTGTTTCTGTTCTTCGAGTCGGGGTTGCTTGTTCTGCATATTCTGGAGCTGAAAGAATGAACATCACTGAAACTGTTTCCCAATTGTACTCTATCAAGGAAGCTCTTTTGGAATCACAAAAAACTTCTGGAGCACATTAATCTATGTTACTCGAATCCTCCAAAAATGTAGTTACCTATGAGTATAATAAGTTTTTGCTTCAGTATTTAGTCCATTCATCACCTAATCTATGTTACTCGAATCCTCCAAAAATGTTGTCGCTCATGTGTCAGATCCTTCAAACATACATAAACTTTTGGAGGATCCGACACACACCTTGCATGTTGTTGAAGAGTTCGAGCAACCTATCACCAATTACATGATGTTGAACTACAGAATATCTTGTACTCCCCTCCGTTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCCGTTTCAGCAAATGAAAGTCTCTTTCTTGTTTTGACAACTCTCTAATTTAAACTTTCCACATGACATGCACGAGATTGAAGAACATTTTGGTACATTCTACCTATCTGGAATAAGTCTTCAAAGAGCTCCTTTGCAACATATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369678" ref_strand="+" ref_description="SGN-E369678 [TUS-25-N18](-)">
      <seq>gctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="41770" stop="39147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41470" g_stop="41391" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40001" g_stop="39872" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="359" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39787" g_stop="39444" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="703" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E369678" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41470" e_stop="41391"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39872"/>
          <exon e_start="39787" e_stop="39444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</genome_strand>
        <mrna_strand>GCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220147" ref_strand="+" ref_description="SGN-E220147 [cLEL-12-O23](-)">
      <seq>taactctatagtcgaatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="40268" stop="39147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39872" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39787" g_stop="39455" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="430" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="447"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E220147" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39872"/>
          <exon e_start="39787" e_stop="39455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</genome_strand>
        <mrna_strand>TAACTCTATAGTCGAATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236057" ref_strand="+" ref_description="SGN-E236057 [cLED-16-N3]">
      <seq>gtaaacttgggctaggaaggggcagttagcagattttttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacatttactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="40863" stop="39369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40563" g_stop="40527" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40526" i_stop="40429" i_length="98">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="186" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40001" g_stop="39872" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="316" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39787" g_stop="39669" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="436" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E236057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40563" e_stop="40527"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39872"/>
          <exon e_start="39787" e_stop="39669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACA-TTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTT</genome_strand>
        <mrna_strand>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTT..................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214148" ref_strand="+" ref_description="SGN-E214148 [cLEC-80-P12]">
      <seq>ctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtttgtccaaccctatccacaattaaatctaaaaaaagctgtctcgtgactctttctgctaaggactcctgtgcgacaaatcagatgcagttgatggaaagcttacctgatccttcttttcaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggncttcaaactcatcagtgatggctgattctttgggcttggagtcaccttcacgattttcgagacttactcagcccaccatgattgatgagaacttgatttctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="42148" stop="39432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41848" g_stop="41391" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="607" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40001" g_stop="39872" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="736" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39787" g_stop="39732" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="790" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E214148" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41848" e_stop="41391"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39872"/>
          <exon e_start="39787" e_stop="39732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGG</genome_strand>
        <mrna_strand>CTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGNCTTCAAACTCATCAGTGATGGCTGATTCTTTGGGCTTGGAGTCACCTT-CACG....................................................................................ATTTTCGAGAC-TTACTCAGCCCACC-ATGATTGATGAGAACTTGATTTCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261699" ref_strand="+" ref_description="SGN-E261699 [cLEG-61-B5]">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggaatagcttgtatcggnttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44611" stop="39978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="44058" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41391" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40428" g_stop="40280" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="787" r_length="151" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40001" g_stop="39992" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="797" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E261699" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41391"/>
          <exon e_start="40428" e_stop="40280"/>
          <exon e_start="40001" e_stop="39992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGG-ATAGCTTGTATCGG-TTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGAATAGCTTGTATCGGNTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369679" ref_strand="+" ref_description="SGN-E369679 [TUS-25-N18]">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44611" stop="40062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="44058" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41391" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40428" g_stop="40362" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="703" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E369679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41391"/>
          <exon e_start="40428" e_stop="40362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273352" ref_strand="+" ref_description="SGN-E273352 [cLEN-3-J13]">
      <seq>cagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacgggtataaaatctcaatgaaaactaatatgcatttttgatattgtttggtgatgagtttcatcaaagtttgttttaagtgagtgatttgactaaacaaatttggcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44465" stop="40983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44165" g_stop="44058" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="271" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41283" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="598" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E273352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44165" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</genome_strand>
        <mrna_strand>CAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAAGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301648" ref_strand="+" ref_description="SGN-E301648 [cLEW-23-C16]">
      <seq>ctggaggtggattgaggtcacatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcatatttcaagatagagcccataacgaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtgattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44611" stop="41135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44311" g_stop="44058" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41435" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="592" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E301648" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44311" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTG</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCACATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCATATTTCAAGATAGAGCCCATAACGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTGATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255283" ref_strand="+" ref_description="SGN-E255283 [cLEG-30-C9]">
      <seq>cacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44560" stop="41207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44260" g_stop="44058" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41834" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="366" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41507" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="469" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E255283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44260" e_stop="44058"/>
          <exon e_start="41996" e_stop="41834"/>
          <exon e_start="41609" e_stop="41507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAA</genome_strand>
        <mrna_strand>CACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318635" ref_strand="+" ref_description="SGN-E318635 [cTOB-9-B6]">
      <seq>gatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44438" stop="41228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44138" g_stop="44058" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41733" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="345" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41732" i_stop="41610" i_length="123">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41528" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="427" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E318635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44138" e_stop="44058"/>
          <exon e_start="41996" e_stop="41733"/>
          <exon e_start="41609" e_stop="41528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</genome_strand>
        <mrna_strand>GATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG...........................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295033" ref_strand="+" ref_description="SGN-E295033 [cLET-40-G19]">
      <seq>aggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagcttcagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcgatcactggatctcaagctctcacatccacaggtattcatcagcacaagctagttgatggatctgatattgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtggctggtatacgaacacatgaaaatgtggtggacaagctacttgaacgtgtctgtaattaagcatgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44440" stop="41238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44140" g_stop="44058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41996" g_stop="41733" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="347" r_length="264" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41732" i_stop="41610" i_length="123">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41609" g_stop="41538" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="420" r_length="73" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E295033" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44140" e_stop="44058"/>
          <exon e_start="41996" e_stop="41733"/>
          <exon e_start="41609" e_stop="41538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGT-TCTGTAATTAAGCATGAAAAC</genome_strand>
        <mrna_strand>AGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTTCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCGATCACTGGATCTCAAGCTCTCACATCCACAGGTATTCATCAGCACAAGCTAGTTGATGGATCTGATATTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG...........................................................................................................................GTGGCTGGTATACGAACACATGAAAATGTGGTGGACAAGCTACTTGAACGTGTCTGTAATTAAGCATGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252288" ref_strand="+" ref_description="SGN-E252288 [cLEG-12-H9]">
      <seq>actttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44822" stop="41441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44522" g_stop="44495" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44058" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="365" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41996" g_stop="41741" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="621" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E252288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44522" e_stop="44495"/>
          <exon e_start="44394" e_stop="44058"/>
          <exon e_start="41996" e_stop="41741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATC</genome_strand>
        <mrna_strand>ACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200964" ref_strand="+" ref_description="SGN-E200964 [cLEC-5-G15]">
      <seq>ttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="44850" stop="41596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44550" g_stop="44495" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44058" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41996" g_stop="41896" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="494" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E200964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44550" e_stop="44495"/>
          <exon e_start="44394" e_stop="44058"/>
          <exon e_start="41996" e_stop="41896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAG</genome_strand>
        <mrna_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335551" ref_strand="+" ref_description="SGN-E335551 [cTOE-2-J9]">
      <seq>tctcgagtttttttttttttttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatctttggttttcttgatagtaatcatgaggataaaaagtagtaccgagctcttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcngaaagttgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="45456" stop="44179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45156" g_stop="44495" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44394" g_stop="44380" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="681" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E335551" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45156" e_stop="44495"/>
          <exon e_start="44394" e_stop="44380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCT-GTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATC-TTGGTTTTCTTGATAGTAATCATGAGGAT-AAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG-GTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAAC</genome_strand>
        <mrna_strand>TCTCGAGTTTTTTTTTTTTTTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTTGGTTTTCTTGATAGTAATCATGAGGATAAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCNGA....................................................................................................AAGTTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214143" ref_strand="+" ref_description="SGN-E214143 [cLEC-80-N10]">
      <seq>caaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatcttggttttcttgatagtaatcatgaggataaaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="45562" stop="44261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45262" g_stop="44561" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E214143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45262" e_stop="44561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAG</genome_strand>
        <mrna_strand>CAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317991" ref_strand="+" ref_description="SGN-E317991 [cTOA-30-L11]">
      <seq>acaagtaattttggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttnggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="45878" stop="44725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45578" g_stop="45025" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E317991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45578" e_stop="45025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTT-GGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATAT</genome_strand>
        <mrna_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTNGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317878" ref_strand="+" ref_description="SGN-E317878 [cTOA-30-L12]">
      <seq>ttgtggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctagcggtggaaataatcttaccttaatccaaactatgatgatttcactttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="45870" stop="44731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45570" g_stop="45031" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E317878" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45570" e_stop="45031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGA</genome_strand>
        <mrna_strand>TTGTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAGCGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCACTTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248186" ref_strand="+" ref_description="SGN-E248186 [cLEF-55-G22]">
      <seq>gtcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaagaaactatgttgaatatttaaatgaaaatgagataaaggatgcatggcttgatagtgttgatactgagaaaacatattctgggaagaaagctatcaagatatcaaatgaagatgagattcaagaccttacatcagaacaactaggaaagatgaagaggcgaattgctgatgtgctcgaaccaggagaaacagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="53831" stop="51638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53532" g_stop="53417" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53416" i_stop="52296" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52295" g_stop="52170" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="242" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52169" i_stop="52093" i_length="77">
            <donor d_prob="0.812" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52092" g_stop="51940" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="395" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E248186" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53532" e_stop="53417"/>
          <exon e_start="52295" e_stop="52170"/>
          <exon e_start="52092" e_stop="51940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</genome_strand>
        <mrna_strand>GTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAAGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725632" ref_strand="+" ref_description="SGN-E725632 [LA04BE07]">
      <seq>accgctctctcttcaatttgccccttcattttttttcctttctgaatccttcatatcaattgccgattacgccatggaagaaggttcatcgcgacgtgccaaacgtcccttcgttgaggacgatgactccaataaagctccagagcagaagcgtgtaaggttcccaaagggtaagaaggcaaagcagggcgataccacgattgatgggtgtgaagataaacctagtgggcggacagatcctcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaggaaactatgttgaatatttaaatgaaaatgagantaaggatgcatggcttgatagtgttgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="55877" stop="51765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55577" g_stop="55434" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55433" i_stop="53628" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53627" g_stop="53417" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="355" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53416" i_stop="52296" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52295" g_stop="52170" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52169" i_stop="52093" i_length="77">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52092" g_stop="52065" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="509" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E725632" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55577" e_stop="55434"/>
          <exon e_start="53627" e_stop="53417"/>
          <exon e_start="52295" e_stop="52170"/>
          <exon e_start="52092" e_stop="52065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGAGTAACTATTTCCTTCCTTCTTTCTTTTTATTTTTTATTTTTGAAAAATTTCATGTGATTTTGTGCCCTAATTTATTCTGAACATACTTAGGGATTCTGCACAGATGAAAGCTCATATTCATTTGTTATATTGATTTCGGAATATAAAATTTGAGCTGTAAGTTTGTGATTTCTTAGTAAATAATATTTTGTATATGTTTGAAACATAGTGGTGAAACCCCAAGGGTGTGGCTTAGTGATTAATGAAGTGGTTGAGAATTCTGAGGTCTTATAAAACTCAGGGAAGACAACAAAGTTATTTGGTGGGAGGTGGGACGTATCCAATGTATTTGGATACCAAGGTCATTAAAATTAACAAAAAACTTCTCAAAGGGTGTGGCTTAGTGGTCAAGGGAGGTGGGTTGAGCATCATGAGGTCTAATGTTCAATTTCTAGTAGAGACAAAAATGCTAGATGATTTTTTTCTATTTGTCCTAGTTTTGGTGGACAGAGTTACCTGATAGTTGTTAATGGTGAGAGGTGGAATTAGTTGAGGTGTGGGAAAACTGGCGTGAACACCACAATCATAATAAAAACATAATGCGAAAGGAAACCAATTTATTTTACCATTGAAATTTAATGACATTGATTTCATAAAAAAGTGAATAAGGAAGGGTGTGATCTAGTGGTTAATGAAGTGAGTTGAGAACCATGAGGTCTAAGGTTCAAATTCCAACATAGAGAAGAAAAGTGATTTCTTTCTACCTGTCCTAGCCTTGAGGATAGAGTTACTTTATAGCTGTTTTGGTGGGGAGCGACAGATATCTATGTAATTAGTTAAGGTGCGCATAAGCTGGTCTAGTAACTACAGTTGTCTAAAAAACGAAAGAAGTGAACTAGGGGGAGTATTTTGTATCAATAGAAAGATAAAAATAGATAAATAAGTAAGGAAGCTCATTTTTGTTTTTATAACTCAATTAATTCTATCCTATGGGATCTCTACTACCTCCCATCCACATAGATATCACTTTACTGTGTCAATTGAGGCTTAAATAGATAGGGAGAATACACATAGTATTTTTTGCTTCTGCTGGGATTGATTTATTATGTCATTATTGTAAGAATTTTAGGAGCTTCCCAGAGGAGTTCAGGAGTATGTACTTGGATTTGCTTTCTTTCAGCTGCTATCTATTTTTGTTATTCTGCAAATGCGCCCAGATTCTATTAGCTTGTTTTTTCCTAATCTGAATTACCGTTGATTTCATATATGATGTGAACCTGGAGCAAAAATCTAGTGGGAATGGGTGGATTGTGTATTCTTAGTACCTAGAAAATGTCTAATAAAGAAGGGTGTGTTTGGCCTTGAGAGAACTATGCAAGAAAATACTTTATTTGTTGGAGATTTAAGGAATTATACAGTGACTATGCCTCATGCCCAAACTAATTGGATTAGTTATATGTAATCTCTATATCTATTTACTCTAACTGTGATCATTTCATTCCAGTGCTCAATAGTTTGTCTTTGAAGATAAAGTAGACTGCTTTCTTTTTCAGATTAGAGGTTGTATTTTGTTGTTGAGACTGTCATGAGTTTAGTACGAGAAAAAATAGATCTTTTTTACCTACTGTTATTTTCCTTGTAAAGATAATGTGTTTCATGAGACAGCAATAGCAAGTAATACAACTTCAAATAGCGTTTTTTTTTTCCATGTGACGTCTGCCATGCTCTATGACAACCTCATTTGTTGGGTTCAAAATAGTTTCATTTATGATGCTGGATTTTAAGGATGTTTGCATTGACATGTTGCTTTCTTCCTCAACATCACAGGCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTG</genome_strand>
        <mrna_strand>ACCGCTCTCTCTTCAATTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGANTAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369657" ref_strand="+" ref_description="SGN-E369657 [TUS-25-J14](-)">
      <seq>gcatttccctgaaaaagtttatgagtctaaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtttcatagctgcattgtgcatagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="80469" stop="78927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80169" g_stop="80124" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="169" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79761" g_stop="79239" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="692" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="710"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E369657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80169" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</genome_strand>
        <mrna_strand>GCATTTCCCTGAAAAAGTTTATGAGTCTAAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713762" ref_strand="+" ref_description="SGN-E713762 [FB09CD01]">
      <seq>cttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="80323" stop="78954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80023" g_stop="79915" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79761" g_stop="79254" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="617" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E713762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80023" e_stop="79915"/>
          <exon e_start="79761" e_stop="79254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTT</genome_strand>
        <mrna_strand>CTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546310" ref_strand="+" ref_description="SGN-E546310 [TUS-69-J19](-)">
      <seq>agagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagcttacgagtctgaagagaatttgcgcaagtgtgctgagtctgccttggaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaacaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctggctgaccaaagatgaactgttggaatactttcctgagcaagctgaattcctgaacaagatgatcatcagctgatgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatggcttggactgctggagacagatttttatgtctcgacagtctgactagcgtgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaagaactctgaagtagtgatgaattcagtatgaatatgcttttgtagatgcacgatttcatctcgtgtcgtaaaataaacagaacanaattacatgttgcagccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="81528" stop="78972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81228" g_stop="81190" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="361" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79761" g_stop="79269" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="853" r_length="492" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E546310" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81228" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACA-AATTACATGTTGCAGCCTTAACGA</genome_strand>
        <mrna_strand>AGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGCTTACGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTGGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAACAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGCTGACCAAAGATGAACTGTTGGAATACTTTCCTGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGATGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAAT-GGCTTGGACTGCTGGAGACAGATTTTTATGTCTCGACAGTCTGACTAGCGTGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAGAACTCTGAAGTAGTGATGAA-TTCAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGTGTCGTAAAATAAACAGAACANAATTACATGTTGCAGCCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353373" ref_strand="+" ref_description="SGN-E353373 [cTOS-15-M18]">
      <seq>agaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagcctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="80349" stop="78972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80137" g_stop="80124" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="137" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79761" g_stop="79274" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="625" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E353373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80137" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTT</genome_strand>
        <mrna_strand>AGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540533" ref_strand="+" ref_description="SGN-E540533 [TUS-60-N19](-)">
      <seq>tcaagaattttgtttcgttgagggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaagttgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="81555" stop="79057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="276" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="399" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79761" g_stop="79346" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="815" r_length="416" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E540533" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</genome_strand>
        <mrna_strand>GTTTCGTTGAGGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGTTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234972" ref_strand="+" ref_description="SGN-E234972 [cLEL-6-A23](-)">
      <seq>tgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="79931" stop="79031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79631" g_stop="79346" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="315"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E234972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79631" e_stop="79346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</genome_strand>
        <mrna_strand>TGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540536" ref_strand="+" ref_description="SGN-E540536 [TUS-60-N19]">
      <seq>tttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82260" stop="79234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81960" g_stop="81799" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="427" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="550" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79534" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="777" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E540536" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81960" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCA</genome_strand>
        <mrna_strand>TTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTC-AACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369658" ref_strand="+" ref_description="SGN-E369658 [TUS-25-J14]">
      <seq>aaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82183" stop="79258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81883" g_stop="81799" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="226" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="350" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="473" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79558" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="677" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E369658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81883" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAA</genome_strand>
        <mrna_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213384" ref_strand="+" ref_description="SGN-E213384 [cLEC-71-C20]">
      <seq>aaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtgacaaagatgaattgttggaatactttcctgagcaagctgaattcctgaacaagatgatcatcagctgatgtttgtttctgctcaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="160" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="226" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="301" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="425" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="548" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79597" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="712" r_length="164" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E213384" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGA-CAAAGATGAATTGTTGGAATACTTTCCTGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGATGTTTGTTTCTGCTCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267684" ref_strand="+" ref_description="SGN-E267684 [cLEI-12-A24]">
      <seq>caaaatcgatcctactgtatgtgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtgacaaaagatgaattgttggaatacttttcctgagcaagctgaattcctgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82137" stop="79334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81837" g_stop="81799" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="105" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="180" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="304" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="427" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79634" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="556" r_length="129" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E267684" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81837" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC-TTTCCCGAGCAAGCTGAATTCCTGAACAA</genome_strand>
        <mrna_strand>CAAAATCGATCCTACTGTATGTGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGACAAAAGATGAATTGTTGGAATACTTTTCCTGAGCAAGCTGAATTCCTGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248848" ref_strand="+" ref_description="SGN-E248848 [cLEF-49-K23]">
      <seq>aaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82183" stop="79363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81883" g_stop="81799" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="226" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="350" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="473" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79663" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="572" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E248848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81883" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC</genome_strand>
        <mrna_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268276" ref_strand="+" ref_description="SGN-E268276 [cLEM-3-A12]">
      <seq>acacattcacggagaaattttaatttgggtttttagggtttgtgaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82280" stop="79386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81938" g_stop="81799" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="205" r_length="141" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="271" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="346" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="470" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="593" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79686" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="669" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E268276" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81938" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGCTGTTC-ATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGA</genome_strand>
        <mrna_strand>GTCTGCTGGTCGATCTGTGACATCTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325293" ref_strand="+" ref_description="SGN-E325293 [cTOC-1-H3]">
      <seq>gtttgtgaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="168" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="234" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="309" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="433" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="556" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79720" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="598" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E325293" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316469" ref_strand="+" ref_description="SGN-E316469 [cTOA-25-C9]">
      <seq>tctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttccagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaataagtcggatactaggggaaaaggtgattatcgaattgattataaaccagctccgcgaatctcacaagcagataagactaatgatcaaagggcattacagcgagcactagacaggagactctatcttctaggccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaaggttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttggtggaaacgcccctatgggtcatatggtcatactacccactgaagactagaaaattctgtcaatcaagcgcttcttcctcaaatcccaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81937" g_stop="81799" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.620" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="405" r_length="124" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="528" r_length="123" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79737" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="553" r_length="25" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E316469" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81937" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGTTC-ATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTA</genome_strand>
        <mrna_strand>TCTGCTGGTCGATCTGTGACATCTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCCAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAATAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCGAATTGATTATAAACCAGCTCCGCGAATCTCACAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGGCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGGTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGGTGGAAACGCCCCTATGGGTCATATGGTCATACTACCCACTGAAGACTAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCCTCAAATCCCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391665" ref_strand="+" ref_description="SGN-E391665 [TUS-24-O17]">
      <seq>aatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagaggggggggggcggtgtgctgagtctgccctagaatctttcattggaaatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagaacagaaaattctgtccatcaagcgcttcttcttcaaatcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="300" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="424" r_length="124" r_score="0.895"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.80"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="547" r_length="123" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79761" g_stop="79741" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="568" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E391665" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79915"/>
          <exon e_start="79761" e_stop="79741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAA</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGGGGGGGGGGCGG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAAATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGAACAGAAAATTCTGTCCATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314036" ref_strand="+" ref_description="SGN-E314036 [cTOA-19-C13]">
      <seq>gaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="162" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="427" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79924" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="541" r_length="114" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E314036" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336151" ref_strand="+" ref_description="SGN-E336151 [cTOE-12-O3]">
      <seq>tcactttcagtactgtggaatttgggtttttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82288" stop="79641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81988" g_stop="81799" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="256" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="455" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79941" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="552" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E336151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81988" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTG</genome_strand>
        <mrna_strand>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247388" ref_strand="+" ref_description="SGN-E247388 [cLEF-46-B13]">
      <seq>atgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="158" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="423" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79942" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="519" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E247388" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290360" ref_strand="+" ref_description="SGN-E290360 [cLES-20-C24]">
      <seq>ttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtcaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagcggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaacggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82259" stop="79651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81959" g_stop="81799" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="302" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="426" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79951" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="513" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E290360" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81959" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATG</genome_strand>
        <mrna_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTCAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGCGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378266" ref_strand="+" ref_description="SGN-E378266 [TUS-24-O17]">
      <seq>atgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgncagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82235" stop="79684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81916" g_stop="81799" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="158" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="423" r_length="124" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79984" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E378266" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81916" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGNCAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267651" ref_strand="+" ref_description="SGN-E267651 [cLEI-12-A11]">
      <seq>caaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaaggttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82137" stop="79694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81837" g_stop="81799" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81255" g_stop="81190" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="105" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80771" g_stop="80697" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="180" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80247" g_stop="80124" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="304" r_length="124" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80037" g_stop="79994" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="348" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E267651" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81837" e_stop="81799"/>
          <exon e_start="81255" e_stop="81190"/>
          <exon e_start="80771" e_stop="80697"/>
          <exon e_start="80247" e_stop="80124"/>
          <exon e_start="80037" e_stop="79994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACA</genome_strand>
        <mrna_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGGTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546270" ref_strand="+" ref_description="SGN-E546270 [TUS-69-I19]">
      <seq>gaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatgaagtaaatctacaaaagaaaatagtttcttttgtccaaaattttgcagtggtttctaatgcttaggagataatgtgtaatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82248" stop="81116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81948" g_stop="81416" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E546270" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81948" e_stop="81416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</genome_strand>
        <mrna_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGAAGTAAATCTACAAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358599" ref_strand="+" ref_description="SGN-E358599 [cLHT-22-L20]">
      <seq>aaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="82247" stop="81200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81947" g_stop="81500" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E358599" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81947" e_stop="81500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGA</genome_strand>
        <mrna_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308984" ref_strand="+" ref_description="SGN-E308984 [cLEY-23-H19]">
      <seq>gcaagaccactcttgcaagaaacctctacagaagtcctcgtatagtcaatacctggcctacacgtgcttggatatgtgtttctcaagagtacaacacaatggatcttcttaagactatcataaaatccatccaaggttgcaccatgggaactctaggattgttggaaaagatggatgaaagagatctagaaaatcaccttcgtgatctactgaaagaacgcaaataccttgtagtggttgatgatatatggcagagagaagcatgggaaagtttgaaaagagcattcccggatggcgagaagggcagcagagtcattattaccacgcgcaaagaggatgttgctgaaagagcagacgacagaggttttgttcataaacttcgtttcctaagccaagaagaaagttgggatctcttttgcaggaaactacttgatgttcgagcaatggttccagaaatggaaagtctagctgaggatatggtggaaaagtgtagaggcttacctcttgcgattgttgtattgagcggactactttcgcataaaaaggggctaaacgaatggaaaaaggtgaaagatcacctttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="83925" stop="85110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84225" g_stop="84810" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E308984" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84225" e_stop="84810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTACACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTAGGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAA</genome_strand>
        <mrna_strand>GCAAGACCACTCTTGCAAGAAACCTCTACAGAAGTCCTCGTATAGTCAATACCTGGCCTACACGTGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTTGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAATCACCTTCGTGATCTACTGAAAGAACGCAAATACCTTGTAGTGGTTGATGATATATGGCAGAGAGAAGCATGGGAAAGTTTGAAAAGAGCATTCCCGGATGGCGAGAAGGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTTGCTGAAAGAGCAGACGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGCCAAGAAGAAAGTTGGGATCTCTTTTGCAGGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTGAGGATATGGTGGAAAAGTGTAGAGGCTTACCTCTTGCGATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGGGCTAAACGAATGGAAAAAGGTGAAAGATCACCTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255576" ref_strand="+" ref_description="SGN-E255576 [cLEG-36-A22]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctctttgccagacatcatcaaccaccacaaggtatttgcgttctttcaatagatcacgaaggtggttttctagatctctttcatccatcttttccaacaatcctagagttcccatggtgcgaccttggatggattttatgatagtcttaagaagatccattgtgttgtactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="85248" stop="84008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84948" g_stop="84308" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E255576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84948" e_stop="84308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258424" ref_strand="+" ref_description="SGN-E258424 [cLEG-47-M4]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="85248" stop="84180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84948" g_stop="84480" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E258424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84948" e_stop="84480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258522" ref_strand="+" ref_description="SGN-E258522 [cLEG-47-C16]">
      <seq>gtgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcaacgatatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="85249" stop="84255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84950" g_stop="84555" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E258522" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84950" e_stop="84555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTT</genome_strand>
        <mrna_strand>GTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAACGATATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271747" ref_strand="+" ref_description="SGN-E271747 [cLEM-23-P4]">
      <seq>tacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaattccaagactgagagagttgctgagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="94316" stop="93155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94016" g_stop="93455" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E271747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94016" e_stop="93455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</genome_strand>
        <mrna_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271623" ref_strand="+" ref_description="SGN-E271623 [cLEM-23-A23]">
      <seq>tacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="94316" stop="93185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94016" g_stop="93485" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E271623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94016" e_stop="93485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAA</genome_strand>
        <mrna_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329078" ref_strand="+" ref_description="SGN-E329078 [cTOC-24-H9]">
      <seq>gtcgccgataatcagtggattttcacctatttgagggtgtactttgaggaaggtgaatgctcaaattcgtcattctttttagtggaaaaatacatctcgagatgatggaaattgaaattgcgtccctttaccactacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatgcggagtgaatgtgacagcaagcaagcaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="97152" stop="93232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96852" g_stop="96818" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96817" i_stop="94116" i_length="2702">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94115" g_stop="93532" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="619" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E329078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96852" e_stop="96818"/>
          <exon e_start="94115" e_stop="93532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAGGTAAGAATCGAACCCCATAGCTGTGAATTTAGCTTATAATCTTCATATATATGAAGTACAGTTGAATTAGGGATGAAATTGTGACGGGATAACTTTGGTAATTGTGGGTTTTCATTTCAAGCATATTTAATTGTATTTTGTTGTCCGATTGATATGCAAATCGAGTGTAAAGTTTCTGTTAGCTTATCATACCATTGTCTACTTGTCTGTTTTAAGCCATACGGACACTTTTTGAGTCTCCACACTAGTCATGGAGCATCCACTTAGACTTCTCCATGCAAGTTTCCATGGGGAACGCATTATTGACATCTAGTTCCACTCGATGTACGGAGTCTACCTTGGAGATCCGATTAAATTCGGATGACACACGACAAGGTCCACTTAGAGGTGGCGCTCCCAACAAGATTTTTCTCTATAGCTAGGGCTTGAAGGAGACCTCTGGATAAGGGTGAAACACTCCCACCAGTACACCACAACCCATGTTGGTTATTGACATCTATTTGATAAAGCTACTATCCTTGTTTGACAACTACATTGATTAAAGTCTCCACAATGGTCAAGATGACCATTGGTGAAAATGTTTCAATGTAGTCAAGTGTACCCTTTGCCCACCAACCTAGCCTTGAACCTTGCTACACTTCCATGTCCGCTGTGTTTGATCTTGTAAACCCACCTACAACCCATTGCCTTCTTTCCTGCAGGTAGATTAGCCGAATGCTAAGTTTGGTTAGCATATAAAGTCTAAAATTACCGTGTCATGGTTGGTTGCCATGCAGGATTCATAGCTACTCTCTCATAGTAATTAGGTTCTCTTATCATAAGAAATGTTTTGCATAACCGGCTGGCTATCAGGATCCAGTGAGATGAGGGGAATTTTTCCAGTGTTGGTGAAAAGGGCACTGAGAGATGGAGAAGGTTCTTAGACCTGGTCTTTCAGAAGGGGAAGATAATAGACAAATTCCATCAAATGAGGTGGGGTATTGTGGATCCTACATCCTAGAGTATCTCCTAGGAGCAGGTATGTCTAAGTGGCTACTAGAAGTGGATGGTGGCAAGGTCTTATCAAAGAAGGATGATTGATGAGGTTGATAGGATGATAGACTTTGATCTGCAAGTAAAGGAGCGTATCGGTAGGACTGGCAGTGTGAAGTATCAATCTGTTAGAGTCAAGAGGAGCAGTAACAGAAGGTGGAGTGTTCTTGGTGTGCAATTGACATTCATCTAAAGTATGTAATTCTGTATAACATTGATATCACACATAGCTGTGGTCTTACAAGTATCACACATTTAGACAAACAATTATTCATAGGTTGAGAGCTTCAAAAAAAATATTTCATAGGTTGAGAAAAAGCAACAGGAACATAAAGTGAAACATGACATGACTCAGTAAATTGGCACTTCGCGCAGAGAAAGTATATTATGAAGTTGGGTTTGATGTCTAAATTCTGTGTTGCTTTATGGATTCATTTGACGAATTGAGTAATTTTACTGGGAATTGCTGGACTTGAACTGTGACATTTTTTTTCCTTCACAAAAAACATGATTTTGGAAGTTTTATTGTTAACAGTGAGCATCTATGTTCTATGGATTTTAATTTCTTTTCTCATCCCAAAGAAATCAAAACAAGATATAAGAAAAAGAGAGCAAAACAATAGAAAAAACTCCAACGCAGCTTCAAAACTTTTTTTTTTTTGGTATTCAGTATCTAAGTGACATGTACTTTCTCAACTGACTCTTGTGAAAAACTGATGTGTGACATCTTTTTTCTGTTTTGTTGGTATTTTGTAGTGGTATTTAGTGTCATTTATGTCATTGATGCAATCTTGATATTAATTACTAGCATGAAATGAATGTGACACATCATTTAATTAGACGGAAGATGGATTAAAGAGGAAGCCATCTGGAAGAAGGCCCTATGTCGAAAACATTTAAACAGTTACACTCTTTAGTGTGTGTTCATCGGAACTGGGGGTTAACCATGATGTTTTCCAACTCGATGAGTTTCTCCATATCGAGCAATTAATAGTCTTAATAATCAGATTCAACAGTAACATATTACATAAAACATTATCTTAAATGTGGATAAGCAAGATAACTTACCGCAGACCAATTAATTTATGTTAACACTAGCATTTATGCATAGAATGCCAAAACCAATTCTCTTCAAACCAATTCCACACGCACAAAAAGAAATTAAACACTACTGAAGACATTGACTCTCTTTGGCAGCCCTGAAATAATCAGCAAAGCGGCAGAAACCTGTTTAATGCTTTTACAATCCAACTTCATTTATGCATATGTCTTCAAGTGCTTGTCAAAAATGGATCAATAAAAGACAGCTTCTTTTCCCGTTTTACCCAAATTGTAAGACACTTTTTAACATAATAACTAGTAGTCAATAAAAACGAAAAGATTTATCAATTATTTAAAATAATGATTTAACTATAATGTTCAAGGCATTATAGTTACATCTAATTTTTTTTATAGATTATGTGGGGAAGGTACAATCCTCAAAAATATTGTACATAGTTTTGAAAATTTTATAATTTCTCTTCAAAGTTATATATGTTATTACTACTGATTCTTGTGTGCTTACTGGTACCCGCTTCATAAGGACTTCCTATAATATAAGCCCAAAGTTTGTGGTTGATGCTTAATCATGGGAAAGAGGATTTATTTTCTCCTTTTGTCTACTTTTACAGGGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGT</genome_strand>
        <mrna_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGCGGAGTGAATGTGACAGCAAGCAAGCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539888" ref_strand="+" ref_description="SGN-E539888 [TUS-59-O2]">
      <seq>tcgttatcgaggggggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattangtttcatctcttaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="99670" stop="104661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99970" g_stop="100517" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100518" i_stop="104155" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104156" g_stop="104361" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="753" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E539888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99970" e_stop="100517"/>
          <exon e_start="104156" e_stop="104361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCAT</genome_strand>
        <mrna_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTANGTTTCATCTCTT-AAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539885" ref_strand="+" ref_description="SGN-E539885 [TUS-59-O2](-)">
      <seq>gggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattaggtttcatctcttaaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcatcaatcgcgaattttgcggattgttttagtccttgtgcagttgatctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="99683" stop="104711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99983" g_stop="100517" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100518" i_stop="104155" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104156" g_stop="104408" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="788" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="803"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E539885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99983" e_stop="100517"/>
          <exon e_start="104156" e_stop="104408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</genome_strand>
        <mrna_strand>GGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288154" ref_strand="+" ref_description="SGN-E288154 [cLES-7-B13]">
      <seq>acgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggtgtttgagcaattgatccagaatttggcagataatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctctctaccattttgttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattctgagatggggtcacgatgtgatacagatgccttgtaagcatgtttatcataaggattgtctcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="99688" stop="100632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99988" g_stop="100332" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E288154" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99988" e_stop="100332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCA-GATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTG</genome_strand>
        <mrna_strand>ACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGTGTTTGAGCAATTGATCCAGAATTTGGCAGATAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCTCTACCAT-TTTGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTCTGAGATGGGGTCACGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTCTCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314139" ref_strand="+" ref_description="SGN-E314139 [cTOA-21-M17]">
      <seq>gatcttgtatttttttacatatttgttgttttggggctctgttttttttttttttgcttccatgaatcgagctttttctattacttgaaacttcaactgaacctgctttattgatttgtaaaagttttttttcttcttttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttcttctttgttggggtttgctcaattcagctcataaatcccatattggtgctctatttggacctgattttcaattatttgttgttttttatttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="114906" stop="115986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115206" g_stop="115686" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E314139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115206" e_stop="115686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTC</genome_strand>
        <mrna_strand>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545942" ref_strand="+" ref_description="SGN-E545942 [TUS-69-A20]">
      <seq>actactatttttacatactatttgtttttgttttctactttgttaggctcattctcttgctttactttacaagagtggtgaatctttgattttgttaagtgttttgacatatttgttgtattggggctctgttttttttctcctatgaatagagctttttctattacttgaaacttcaactgaagctgctttctttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttttctttgttggggtttgctcaattcagctcataaatcccatattactactctatttggacttgattttctattatttgttgtttttttctttgttggggtttgctcaattcagctcacaaatcccatattagtactctattttggatttgattttcaattattgttgggttttgtttgttgataaatcccagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgctgcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcggtcagctgagcctttcattatagctgctactggtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="114835" stop="116229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115217" g_stop="115929" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="780" r_length="679" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E545942" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115217" e_stop="115929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTG-TTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTG</genome_strand>
        <mrna_strand>TTTTGACATATTTGTTGTATTGGGGCTCTG------TTTTTTTT-CTCCTATGAATAGAGCTTTTTCTATTACTTGAAACTTCAACTGAA---GC-----TG-CTT-T----------------C-TTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTT-TTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTACTACTCTATTTGGACTTGATTTTCTATTATTTGTTGTTTTTTTCTTTGTTGGGGTTTGCTCAATTCAGCTCACAAATCCCATATTAGTACTCTATTTTGGATTTGATTTTCAATTATTGTTGGGTTTTGTTTGTTGATAAATCCCAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCTGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGGTCAGCTGAGCCTTTCATTATAGCTGCTACTGGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339484" ref_strand="+" ref_description="SGN-E339484 [cTOF-4-P12]">
      <seq>tttttttttttttttgcttccatgaatcgagctttttctattacttgaaacttcaactgaacctgctttattgatttgtaaaagttttttttcttcttttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttcttctttgttggggtttgctcaattcagctcataaatcccatattggtgctctatttggacctgattttcaattatttgttgttttttatttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgcggcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcgtcaagctgagccttcaattatagctgctactggtactggtactattcctgctagtttctcgactgtatctgtatcggtacggaactcaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="114947" stop="116285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115246" g_stop="115985" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E339484" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115246" e_stop="115985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541078" ref_strand="+" ref_description="SGN-E541078 [TUS-61-K24](-)">
      <seq>caaccttactatgccggtcttttaccggcggttttttcactgttaaagcaccatttgtaccaaccccagtaggcgcctgttgttgttgcctctgaggatcaattatagctccatttccctctgcagacgtcgacattagaagctcaaaacactagcagcaaaaacggtagtggtggaaaattactaggatttatcaacaaacaaaacccaacaataatcgaaaatcaaatccaaaatagagtactaatacgggaatttgagctgagagagaactagtctcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="116079" stop="115198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115779" g_stop="115514" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E541078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115779" e_stop="115514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTTACTATGCCGGTCTTTTACCGGCGGTTTTTTCACTGTTAAAGCACCATTTGTACCAACCCCAGTAGGCGCCTGTTGTTGTTGCCTCTGAGGATCAATTATAGCTCCATTTCCCTCTGCAGACGTCGACATTAGAAGCTCAAAACACTAGCAGCAAAAACGGTAGTGGTGGAAAATTACTAGGATTTATCAACAAACAAAACCCAACAATAATCGAAAATCAAATCCAAAATAGAGTACTAATACGGGAATTGTGAGCTGA</genome_strand>
        <mrna_strand>CAACCTTACTATGCCGGTCTTTTACCGGCGGTTTTTTCACTGTTAAAGCACCATTTGTACCAACCCCAGTAGGCGCCTGTTGTTGTTGCCTCTGAGGATCAATTATAGCTCCATTTCCCTCTGCAGACGTCGACATTAGAAGCTCAAAACACTAGCAGCAAAAACGGTAGTGGTGGAAAATTACTAGGATTTATCAACAAACAAAACCCAACAATAATCGAAAATCAAATCCAAAATAGAGTACTAATACGGGAATT-TGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541080" ref_strand="+" ref_description="SGN-E541080 [TUS-61-K24]">
      <seq>tttttttttttttttttttgagtaggaaagtttaagctcacaactgatatagtttcaacaaattacagaattgaattcaacggaaaccgccatggtttccttacaaaacattcatgtggaactacaggttttcatagtccacactgatcccctattatatcttgttacaatgtgatcaaagcagcttattgtgaggtctgcaaacaacagaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgcttgtgtttcgtgttatcgtcccacagcttacaacaccaaaactcggtgaacgtaaactcttgacaaatgagatatagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctagttcatttctcactcactagaacctagcaacaaatttctcatctaacacaaacaagaacattaaaacacatttatacgatatattaacaacaataacgataacaataacaataacaataatcatatcttcaacgtccgtcgtcgtctcttctcccggaagagggctgtggaggacctgatagagaagctagcaaattgagatgcccttgagtcattggtaagtaattcccaactctagcagctgaagcctcacccatctgctgctgaaagaatctagaactctgcgaacttaacgctgccgcggctgcagctgctgcagccgcggaggttggcaccatcatttcaggtggcggtgccgccgcnaagctccaaatttgaccaaatcangcctagctggaacagcccaaaaccagctgtgggaccacagcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127286" stop="115838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116957" g_stop="116138" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E541080" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116957" e_stop="116138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAAATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCNAAGCTCCAAATTTGACC-AAATCANGCCTAGCTGGAACAGCCCAAAA-CCAGCTGTGGGA-CCACAGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545941" ref_strand="+" ref_description="SGN-E545941 [TUS-69-A20](-)">
      <seq>gaaatgatggtgccgacctccgcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcgggtcctccacagccttcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgaaaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcataataagctgctttgatcacattgtaacaagagataataggggatcagtgtggactatgaaaacttgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcatttctgtaatttgttgaaactatatcagttgtgagcttaaactttcctactcaaaagattgctatggacttcaatttattactgaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="115929" stop="127291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116229" g_stop="116976" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116977" i_stop="117623" i_length="647">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117624" g_stop="117641" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="774" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E545941" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116229" e_stop="116976"/>
          <exon e_start="117624" e_stop="117641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATG---A---TTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTT--ACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTCAACTTACATTGTGTTATCTTGAATGGGTGCTATAATTAGATGTTTTCGACATCTCAATGATTGAGTTGACACCATACTGTATAAAATGAAATGGTTCATTTATTGCATTACTGGTTACACGTGTCGACTGATCAACTAATGCATGGGACAGTGTGAAGTTGAAACATGAAATGCTGTGGAGGCGAACGTATAAGGAGGATAGAACTCTAAATTTCTATACTCAAGCTTTCTTAGATTGGTTATGGACCAGATAATCTTGCTACAGCTTGATGTTTATTCTATGTATAAATGTGCGATGTGTGCCATAGATTCGAAATGGAACAGCTCAAAGTTTCAACAGAAAGAGTATTTGATGATTATTTACGTTAATGATCTTCATGCTATATAAGTTCCTCAGTACCACTCAGAAGATTAAACTGTAGTTGTTAAAAATGTTATAGTATATCATACATTTATGGATGACATGATGCCGTATTCTATCATGTGCTGCTTCAACATGGAGGAGGAAGGAGTTACACTGCAGCATCTGGGAGGATTCTGCTCTGCAGCATCTGAGATTAACGACACCTATCAGCTTTAATTTTGCATCAGATTAGGTAAGATGTGGTTATATTCGCTTTACTTGTGATTCTTTTTGAATCTTATTAGTTTAGAAGATAAAGCATATAGAT</genome_strand>
        <mrna_strand>GAAATGATGGTGCCGACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCGGGTCCTCCACAGCCTTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAAAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCATAATAAGCTGCTTTGATCACATTGTAACAAGAGATAATAGGGGATCAGTGTGGACTATGAAAACTTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCATTTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTGAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281884" ref_strand="+" ref_description="SGN-E281884 [cLES-2-D15]">
      <seq>gcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="115950" stop="117016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116250" g_stop="116716" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E281884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116250" e_stop="116716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTT</genome_strand>
        <mrna_strand>GCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732455" ref_strand="+" ref_description="SGN-E732455 [LB02AH06]">
      <seq>gattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcacaataagctgctttgatcacattgtaacaagatataataggggatcagtgtggactatgaaaacctgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcaattctgtaatttgttgaaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="115999" stop="117210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116299" g_stop="116917" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E732455" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116299" e_stop="116917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTG</genome_strand>
        <mrna_strand>GATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293361" ref_strand="+" ref_description="SGN-E293361 [cLET-18-B23]">
      <seq>ttttttttttttttttttgagtaggaaagtttaagctcacaactgatatagtttcaacaaattacagaattgaattcaacggaaaccgccatggtttccttacaaaacattcatgtggaactacaggttttcatagtccacactgatcccctattatatcttgttacaatgtgatcaaagcagcttattgtgaggtctgcaaacaacagaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgctggtgtttcgtgttatcgtcccacagcttacaacaccaaaactcggtgaacgtaaactcttgacaaatgagatatagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctagttcatttctcactcactagaacctagcaacaaatttctcatctaacacaaacaagaacattaaaacacatttatacgatatattaacaacaataacgataacaataacaataacaataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127286" stop="116150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116956" g_stop="116450" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E293361" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116956" e_stop="116450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTGGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226551" ref_strand="+" ref_description="SGN-E226551 [cLEL-26-J4](-)">
      <seq>aaatttgttgctaggttctagtgagtgaaaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctaaatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtggggcgatatacccgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttttgttgtttgcagacctcccaataagctgctttgatcccattgtaacaagatataataggggatcagtgtgggctatgaaaacctgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcaattctgtaatttgttggaactaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="116236" stop="127286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116536" g_stop="116913" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116914" i_stop="117623" i_length="710">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117624" g_stop="117642" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="398" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E226551" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116536" e_stop="116913"/>
          <exon e_start="117624" e_stop="117642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATA-ACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTCAACTTACATTGTGTTATCTTGAATGGGTGCTATAATTAGATGTTTTCGACATCTCAATGATTGAGTTGACACCATACTGTATAAAATGAAATGGTTCATTTATTGCATTACTGGTTACACGTGTCGACTGATCAACTAATGCATGGGACAGTGTGAAGTTGAAACATGAAATGCTGTGGAGGCGAACGTATAAGGAGGATAGAACTCTAAATTTCTATACTCAAGCTTTCTTAGATTGGTTATGGACCAGATAATCTTGCTACAGCTTGATGTTTATTCTATGTATAAATGTGCGATGTGTGCCATAGATTCGAAATGGAACAGCTCAAAGTTTCAACAGAAAGAGTATTTGATGATTATTTACGTTAATGATCTTCATGCTATATAAGTTCCTCAGTACCACTCAGAAGATTAAACTGTAGTTGTTAAAAATGTTATAGTATATCATACATTTATGGATGACATGATGCCGTATTCTATCATGTGCTGCTTCAACATGGAGGAGGAAGGAGTTACACTGCAGCATCTGGGAGGATTCTGCTCTGCAGCATCTGAGATTAACGACACCTATCAGCTTTAATTTTGCATCAGATTAGGTAAGATGTGGTTATATTCGCTTTACTTGTGATTCTTTTTGAATCTTATTAGTTTAGAAGATAAAGCATATAGATA</genome_strand>
        <mrna_strand>AAATTTGTTGCTAGGTTCTAGTGAGTGAAAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTAAATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGGCGATATACCCGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTTTGTTGTTTGCAGACCTCCCAATAAGCTGCTTTGATCCCATTGTAACAAGATATAATAGGGGATCAGTGTGGGCTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGGAACTAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545948" ref_strand="+" ref_description="SGN-E545948 [TUS-69-A24](-)">
      <seq>gttctagtgagtgaaaaatgaattaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacacgttcaccgagttttggtgttgtaagctgtgggacgataccacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttccgttgtttgcagacctcataataagctgctttgatcccattgtaacaagagataataggggatcagtgtggactatgaaaacttgtagttccccatgaatgttttgtaaggaaaccatggcggtttccgttgaattcatttctgtaatttgttgaaactatatcagttgtgagcttaaactttcctactcaaaagattgctatggacttcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="116250" stop="117264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116550" g_stop="116964" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E545948" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116550" e_stop="116964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTT--ACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTA</genome_strand>
        <mrna_strand>GTTCTAGTGAGTGAAAAATGAATTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATACCACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCCGTTGTTTGCAGACCTCATAATAAGCTGCTTTGATCCCATTGTAACAAGAGATAATAGGGGATCAGTGTGGACTATGAAAACTTGTAGTTCCCCATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCATTTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344770" ref_strand="+" ref_description="SGN-E344770 [cTOF-21-P15]">
      <seq>taagattttagaacgtagaaaaccacaattttcaaaagctaatcccaaattccaaaaattttccgatcggagatttttttttccgatcagaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgaggttgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaatatttacgcaaccagtattccactgcaacaacatctctggatttgtagatccggttgttccagataatgaaaacagtgccttgtactccacacatacattcaagattttgttcaggatggtggttgtgggactttcgtgccattatttttcaacttaatcgcctctgtgagacgagctcagcaacagtctggggtacagccacgggcagaccctctccaagctgcacaaactccagttgatgagatgattagacatgcttatgtcgatcccaatgatccaacgaaaatcttcttgcagcagcctactccagagtcgcacttaggcgtcgntcataccaatcacaacctgcttaaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="120352" stop="123425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120652" g_stop="120867" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121436" g_stop="121538" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="318" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122282" g_stop="122353" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="390" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122701" g_stop="122906" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="595" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122907" i_stop="123019" i_length="113">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123020" g_stop="123125" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="699" r_length="104" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E344770" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120652" e_stop="120867"/>
          <exon e_start="121436" e_stop="121538"/>
          <exon e_start="122282" e_stop="122353"/>
          <exon e_start="122701" e_stop="122906"/>
          <exon e_start="123020" e_stop="123125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGCGTATGTCAACGTTGCTTTCTCCTTTTTACAACGACATTAGTTAACGATCCTTTCCCCCCCTCAATATGCTAACTGGTTTTACTGAATTCTTATGGTGTTTGTTGATTTTGCAGTTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</genome_strand>
        <mrna_strand>TAAGATTTTAGAACGTAG-AAAACCACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTC-AGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC.................................................................................................................TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGC-ACTTAGGCGTCGNTCATACCAATCACAACCTGCTT-AAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365110" ref_strand="+" ref_description="SGN-E365110 [cLPP-17-C6]">
      <seq>caaaaattttccgatcggagattttctattccgatcagaaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgtggtcgacaaaatccctggtgtaggaaaaacaagaacaagagggacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaaaatttaagcaaccagtattccactgcaacaacatctctggacttgtagatccggttgttccagataatgaaaacagggccttgtactccacacacacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="120405" stop="123048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120705" g_stop="120867" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121436" g_stop="121538" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="267" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122282" g_stop="122353" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="339" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122701" g_stop="122748" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="387" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E365110" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120705" e_stop="120867"/>
          <exon e_start="121436" e_stop="121538"/>
          <exon e_start="122282" e_stop="122353"/>
          <exon e_start="122701" e_stop="122748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAA-ACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTC</genome_strand>
        <mrna_strand>CAAAAATTTTCCGATCGGAGATTTTCTATTCCGATCAGAAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGTGGTCGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGGACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAAAATTTAAGCAACCAGTATTCCACTGCAACAACATCTCTGGACTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGGGCCTTGTACTCCACACACACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367745" ref_strand="+" ref_description="SGN-E367745 [cLPT-14-G16]">
      <seq>gtcctatctagacatggcgttcaatttgtggtccacaaaatccctggtgttggaaaaacaagaacaagagggacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaaaatttaagcaaccagtattccactgcaacaacatctctggacttgtagatccggttgttccagataatgaaaacagggccttgtactccacacacacattcaagattttgttcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="120521" stop="123065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120821" g_stop="120867" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568">
            <donor d_prob="0.989" d_score="0.87"/>
            <acceptor a_prob="0.898" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121436" g_stop="121538" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="150" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122282" g_stop="122353" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="222" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122701" g_stop="122765" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="287" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E367745" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120821" e_stop="120867"/>
          <exon e_start="121436" e_stop="121538"/>
          <exon e_start="122282" e_stop="122353"/>
          <exon e_start="122701" e_stop="122765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGA</genome_strand>
        <mrna_strand>GTCCTATCTAGACATGGCGTTCAATTTGTGGTCCACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGAAAAACAAGAACAAGAGGGACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAAAATTTAAGCAACCAGTATTCCACTGCAACAACATCTCTGGACTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGGGCCTTGTACTCCACACACACATTCAAGATTTTGTTCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688005" ref_strand="+" ref_description="SGN-E688005 [T3_tus_85_B15]">
      <seq>gagactgtttgttatcagtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctcttttgttactcttactattatattaacaagttactatggcgctccttcagtatctgctgtaactagaccaacatatgcataatgtgcaattcagaatggcgattccaagtataacgattagcgatatttcttttgttgcttctttttgaggctgaacaaaactttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaaatacgatccttctcctatgaaactgtactgtttgtttctaaagctttgacatgttaattgaatggtattatgacatgatttatatctgatttgtatattaagcacaacattgctagatacaacatctgctaggaagcatgttatggcatatattgttcggatatttgttaagatgcatgacatgaattcgtgttcatctgttctatgtttttgttcagagaaataatctggtaagttggtgacttttgctgaacaagaagttacaaaactgagaaatgtaagctacatttgctttgacaaagtttatttacctttttttcttctgcagctttttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="121118" stop="122593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121418" g_stop="122293" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E688005" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121418" e_stop="122293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGAC-TTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</genome_strand>
        <mrna_strand>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTTGCTGAACAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTTCTTCTGCAGCTTTTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333932" ref_strand="+" ref_description="SGN-E333932 [cTOD-24-D9]">
      <seq>agactgtttgttatcagtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctctttttgtactcttactattatattaacaagtactatggcgctcccttcagtatctgctgtaactagacccaacatatgcataatgtgcaattcagaatggcgatttccagtataacgattagcgatatttcttttgttgcttctttttgaggctgaaacaaacttttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaatacgatccttctcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="121119" stop="122272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121419" g_stop="121972" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E333932" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121419" e_stop="121972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCT-CCTTCAGTATCTGCTGTAACTAGA-CCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTG-AACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTAT</genome_strand>
        <mrna_strand>AGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTTGTACTCTTACTATTATATTAACAAG-TACTATGGCGCTCCCTTCAGTATCTGCTGTAACTAGACCCAACATATGCATAATGTGCAATTCAGAATGGCGATTTCCAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAAACAAACTTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTG-AATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTC-AATACGATCCTTCTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228760" ref_strand="+" ref_description="SGN-E228760 [cLEL-29-F7](-)">
      <seq>atgcaaaccagagtgatacagaaaattttggcagattctatagagggatgctggaggaaggtgtttactttgcgccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattaatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124094" stop="16870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123794" g_stop="123503" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123502" i_stop="123204" i_length="299">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123203" g_stop="123186" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="310" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E228760" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123794" e_stop="123503"/>
          <exon e_start="123203" e_stop="123186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTGACAGTCAAATTGTCTCCACGTGATATAAGTCACGTGTTCAATCTGTAGAAAACTGGAAATAATCACTAATGCTTGCATTAGAGTAGACGTCTACATCACATATATCGAGATAAACGTACCATTAAATATATTATAACCTCTGTACACTTGAAGAAAATATGTATACCAACTGCATATACACATGCAAGCCCATTTTCTTCTAGTTTGTTTATATATTTTAATAGAATCAAAGCAATCACCAA</genome_strand>
        <mrna_strand>ATGCAAACCAGAGTGATACAGAAAATTTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCGCCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTAATTTA...........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746071" ref_strand="+" ref_description="SGN-E746071 [GI|47105331]">
      <seq>gacaacaaaaaaattagaagaaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127588" stop="61772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127289" g_stop="127002" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="462" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="123536" g_length="1154"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="1616" r_length="1154" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123535" i_stop="123380" i_length="156">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.316" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123379" g_stop="123359" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1617" r_stop="1637" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E746071" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127289" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="123536"/>
          <exon e_start="123379" e_stop="123359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTGACAGTCAAATTGTCTCCACGTGATATAAGTCACGTGTTCAATCTGTAGAAAACTGGAAATAATCACTAA</genome_strand>
        <mrna_strand>GACAACAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACAG............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744505" ref_strand="+" ref_description="SGN-E744505 [GI|642910]">
      <seq>ggcacgagggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaactttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactagatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcactattttacctcctgtatttaaagcattttttggtcacttgagtacatctgtactatatattaacaagaggagtcttggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127528" stop="123128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127233" g_stop="127002" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="402" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="123428" g_length="1262"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="1664" r_length="1262" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E744505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1668</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127233" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="123428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</genome_strand>
        <mrna_strand>GGCACGAG-GGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCA---TCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTAGATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCACTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339460" ref_strand="+" ref_description="SGN-E339460 [cTOF-4-D18]">
      <seq>gactgctggaattccacgcttaagcggttacaaggacagggaacatacgaaccacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttacctcctgtatttaaagcattttttggtcnnnnaaaanaaaaaaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124285" stop="123175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123985" g_stop="123469" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="529"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E339460" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123985" e_stop="123469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAA-CACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGA</genome_strand>
        <mrna_strand>GACTGCTGGAATTC-CACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACCACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCNNNNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229048" ref_strand="+" ref_description="SGN-E229048 [cLEL-29-F7](-)">
      <seq>atgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124190" stop="123201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123890" g_stop="123502" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E229048" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123890" e_stop="123502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTAC</genome_strand>
        <mrna_strand>ATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554638" ref_strand="+" ref_description="SGN-E554638 [cTSC-4-O9]">
      <seq>gttacaaaatcaccttttattcaacagaacaaaaacttaaaaaggaaaatctctccatctagcatacaaaaagaaatatagtggttaaatttgcttcaaaactttttcagctgcagctacagtcctttgaatatcctctggagtgtgtgctaagctagtaaatccagcctcaaactgtgatggtgcaaagtaaacaccttcctccagcatccctctatagaatctgccaaatttttctgtatcactcttctttgcatccgaaaagttatagatgggaccatccgcgaagaagaagccaaacatcccccttatggagccaccacacattgcatgaccggtcttctttccagcatccaagattccttgtgtaagttccgcggtgatcttgtccaagtgttcgtatgttccctgtccttgtaaccgcttaagcgtgtgaattccagcagtcatggccaatgggtttccacttagggtgccagcttgatacattggtcctgcaggtgctaccatctccattatatcccgtcttcctccgtaagcacctactggcaagccaccgccaataatcttcccgagtgttgtcaaatctggagttattccaaaatactcttgagcaccgccatatgccaatctaaatccagtcatgacttcgtcgaaaataagaagtgcatcattctctttggtgatcttgcgaatggcagcaagaaattctagcttaggtgggatgaagccagcatttccgactacaggctcgaaaattacagcggctatttctcctttgtggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="123238" stop="124624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123538" g_stop="124324" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E554638" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123538" e_stop="124324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAGAATTACAGCGGCTATTTCTCCTTTGT-GCTCC</genome_strand>
        <mrna_strand>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAAAATTACAGCGGCTATTTCTCCTTTGTGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548191" ref_strand="+" ref_description="SGN-E548191 [TUS-58-O21](-)">
      <seq>cggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagttttggtaaagttgaataaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124396" stop="123266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124096" g_stop="123550" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E548191" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124096" e_stop="123550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGG</genome_strand>
        <mrna_strand>CGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTGGTAAAGTTGAATAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731952" ref_strand="+" ref_description="SGN-E731952 [LA28CF09]">
      <seq>ccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaagtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaatttaaccactagatttctttttgtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124774" stop="123298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124474" g_stop="123598" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E731952" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124474" e_stop="123598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCT</genome_strand>
        <mrna_strand>CCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAAGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGC-AATTTAACCACTAGATTTCTTTTTGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268562" ref_strand="+" ref_description="SGN-E268562 [cLEI-13-B5]">
      <seq>gcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatgtactagcttagcacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124529" stop="123379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124229" g_stop="123679" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E268562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124229" e_stop="123679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACT</genome_strand>
        <mrna_strand>GCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATGTACTAGCTTAGCACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730594" ref_strand="+" ref_description="SGN-E730594 [LA24CD09]">
      <seq>ccattggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaaatttggcagattctatagagggatgctggaggaaggtgtttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124919" stop="123425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124620" g_stop="123725" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="897" r_length="897" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E730594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124620" e_stop="123725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAG-AAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTT</genome_strand>
        <mrna_strand>CCATTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702532" ref_strand="+" ref_description="SGN-E702532 [FA18DH11]">
      <seq>cagatatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataaggggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaaagagtgatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124913" stop="123474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124613" g_stop="123774" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E702532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124613" e_stop="123774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAA-GGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAG-AAGAGTGATACAG</genome_strand>
        <mrna_strand>CAGATATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAAGAGTGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698411" ref_strand="+" ref_description="SGN-E698411 [FA06AH07]">
      <seq>cggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaagaatcttggatgctggaaaaaagaccggccatgcaatgtgtggtggctccataaaggggatgtttggcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124906" stop="123526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124607" g_stop="123826" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E698411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124607" e_stop="123826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTC</genome_strand>
        <mrna_strand>CGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAAGAATCTTGGATGCTGGAAAAAAGACCGGCCATGCAATGTGTGGTGGCTCCATAAAGGGGATGTTTGGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291007" ref_strand="+" ref_description="SGN-E291007 [cLET-8-F12]">
      <seq>ttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124730" stop="123709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124430" g_stop="124009" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E291007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124430" e_stop="124009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACC</genome_strand>
        <mrna_strand>TTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314876" ref_strand="+" ref_description="SGN-E314876 [cTOA-31-G5]">
      <seq>ttgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacnacactcgggaagattattggcggtggcttgccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="125814" stop="123783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125514" g_stop="125462" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124689" g_stop="124083" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="660" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E314876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125514" e_stop="125462"/>
          <exon e_start="124689" e_stop="124083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAG</genome_strand>
        <mrna_strand>TTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACNACACTCGGGAAGATTATTGGCGGTGGCTTGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265387" ref_strand="+" ref_description="SGN-E265387 [cLEI-9-K5]">
      <seq>ttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttgcaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcgggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124947" stop="123807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124647" g_stop="124107" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E265387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124647" e_stop="124107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTC-GGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGA</genome_strand>
        <mrna_strand>TTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTGCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700113" ref_strand="+" ref_description="SGN-E700113 [FA12AF09]">
      <seq>ggcctcttggggaccagctataattggtcatgcggatgatgaggtgctatcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcacgagtattttggaataactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="125800" stop="123826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125504" g_stop="125462" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124689" g_stop="124126" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="607" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E700113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125504" e_stop="125462"/>
          <exon e_start="124689" e_stop="124126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCA</genome_strand>
        <mrna_strand>GGCCTCTTGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCACGAGTATTTTGGAATAACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728310" ref_strand="+" ref_description="SGN-E728310 [LA17BF03]">
      <seq>gcattctttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagagatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127350" stop="123927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127050" g_stop="127002" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="223" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124227" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="686" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E728310" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127050" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCA</genome_strand>
        <mrna_strand>GCATTCTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAGATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320345" ref_strand="+" ref_description="SGN-E320345 [cTOB-22-I13]">
      <seq>agaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgangagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127354" stop="123951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127054" g_stop="127002" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="227" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124253" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="664" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E320345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127054" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAA</genome_strand>
        <mrna_strand>AGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGANGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267726" ref_strand="+" ref_description="SGN-E267726 [cLEI-12-B3]">
      <seq>gacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="125880" stop="123969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125580" g_stop="125462" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124689" g_stop="124269" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="540" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E267726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125580" e_stop="125462"/>
          <exon e_start="124689" e_stop="124269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTG</genome_strand>
        <mrna_strand>GACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718502" ref_strand="+" ref_description="SGN-E718502 [FC04DD12]">
      <seq>atggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="124908" stop="124025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124608" g_stop="124325" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E718502" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124608" e_stop="124325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGA</genome_strand>
        <mrna_strand>ATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692405" ref_strand="+" ref_description="SGN-E692405 [LH_Ea08K03]">
      <seq>taatttagaagaaaacccattgcagcactaattcaagaatactcaaagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaactcaaacacccaaatgggggttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaactttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggtggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgttggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtctccctgactctccgggagttccgaaagcagctactatcgatactctgactgcaccttacaatgacatttctgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127579" stop="124038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127280" g_stop="127002" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="455" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124338" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="807" r_length="352" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E692405" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127280" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTC--AGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTG</genome_strand>
        <mrna_strand>TAATTTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAAAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAACTCAAACACCCAAATGGGGGTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGTGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTTGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTCCCTGACTCTCCGGGAGTTCCGAAAGCAGCTACTATCGATACTCTGACTGCACCTTACAATGACATTTCTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318948" ref_strand="+" ref_description="SGN-E318948 [cTOB-11-P20]">
      <seq>tctgaagaagctttcagcaaatccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127328" stop="124161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127028" g_stop="127002" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="201" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124461" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E318948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127028" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTG</genome_strand>
        <mrna_strand>TCTGAAGAAGCTTTCAGCAAATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267421" ref_strand="+" ref_description="SGN-E267421 [cLEI-8-C18]">
      <seq>tgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127503" stop="124189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127203" g_stop="127002" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124489" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="577" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E267421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127203" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAA</genome_strand>
        <mrna_strand>TGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200164" ref_strand="+" ref_description="SGN-E200164 [cLEB-7-B23]">
      <seq>gcacgaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127528" stop="124199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127230" g_stop="127002" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="403" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124499" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="594" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E200164" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127230" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAA</genome_strand>
        <mrna_strand>GCACGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343611" ref_strand="+" ref_description="SGN-E343611 [cTOF-20-B1]">
      <seq>gaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127544" stop="124200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127244" g_stop="127002" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="417" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124500" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="607" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E343611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127244" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTA</genome_strand>
        <mrna_strand>GAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295005" ref_strand="+" ref_description="SGN-E295005 [cLET-17-N8]">
      <seq>tctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127391" stop="124211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127091" g_stop="127002" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="264" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124511" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="443" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E295005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127091" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCAC</genome_strand>
        <mrna_strand>TCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317523" ref_strand="+" ref_description="SGN-E317523 [cTOB-17-A3]">
      <seq>aaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaatatacactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127569" stop="124312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127269" g_stop="127002" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="442" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124612" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="520" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E317523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127269" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCA</genome_strand>
        <mrna_strand>AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAATATACACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325340" ref_strand="+" ref_description="SGN-E325340 [cTOC-1-J12]">
      <seq>aagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127528" stop="124316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127228" g_stop="127002" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="401" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124616" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="475" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E325340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127228" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACT</genome_strand>
        <mrna_strand>AAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697701" ref_strand="+" ref_description="SGN-E697701 [FA03DE05]">
      <seq>cgaataggaagagttggtaacaatggctgctgtaaatggtgtatgactttcatggccatcaaaattgaccaaaaatcaaacacccaaatgggcgtttttctccatctcaccgtcgatgcaacccatcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaactttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcagatgatgaggtgctagcagcattggttgaaacaatgaagaaaggaaccagtttcggcgctccatgtctccttgaaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127529" stop="124318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127230" g_stop="127002" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="401" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124618" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="473" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E697701" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127230" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGG-GTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACA</genome_strand>
        <mrna_strand>CGAATAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTATGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGCGTTTTTCTCCATCTCACCGTCGATGCAACCCA---TCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCAGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGTTGAAACAATGAAGAAAGGAACCAGTTTCGGCGCTCCATGTCTCCTTGAAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322880" ref_strand="+" ref_description="SGN-E322880 [cTOB-30-L20]">
      <seq>aagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcngtgctccatgtctcccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127546" stop="124324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127246" g_stop="127002" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="419" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124624" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="486" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E322880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127246" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCT-CCTTGAA</genome_strand>
        <mrna_strand>AAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCNGTGCTCCATGTCTCCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317415" ref_strand="+" ref_description="SGN-E317415 [cTOA-28-F5]">
      <seq>aagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaagtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127522" stop="124326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127222" g_stop="127002" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="395" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124626" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="459" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E317415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127222" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTG</genome_strand>
        <mrna_strand>AAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289808" ref_strand="+" ref_description="SGN-E289808 [cLET-9-D17]">
      <seq>tcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127548" stop="124362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127248" g_stop="127002" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="421" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124662" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="449" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E289808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127248" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGA</genome_strand>
        <mrna_strand>TCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324578" ref_strand="+" ref_description="SGN-E324578 [cTOC-9-N21]">
      <seq>gagttggtaacaatggctgctgtaaatggtggaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaagagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaaaggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgctgatgatgaggtgctagcagcattggctgaaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127520" stop="124362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127220" g_stop="127002" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125635" g_stop="125462" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="393" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124689" g_stop="124662" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="421" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E324578" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127220" e_stop="127002"/>
          <exon e_start="125635" e_stop="125462"/>
          <exon e_start="124689" e_stop="124662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGA</genome_strand>
        <mrna_strand>GAGTTGGTAACAATGGCTGCTGTAAATGGTGGAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAAGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCTGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283308" ref_strand="+" ref_description="SGN-E283308 [cLER-12-N11]">
      <seq>tttttaacaatggctgctgctaatggagtatgactttcatggccatcaaaattgaccaaaaatcaaacacccaagatgggagtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="127517" stop="126746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127217" g_stop="127046" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E283308" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127217" e_stop="127046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAA-ATGGG-GTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAA</genome_strand>
        <mrna_strand>TTTTTAACAATGGCTGCTGCTAATGGAGTATGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAGATGGGAGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333218" ref_strand="+" ref_description="SGN-E333218 [cTOD-20-K22]">
      <seq>aaagcttctaactttcttgctgacatggttcatgaaggatttctccctgatgtagttggttattcggcagtcatagacggccttgttaagattaaacagttggatgatgcactgaatcttttcagagggatctgtgctcggggttattgccctgatgtggttgcttataacattatgataaatgggctttgtaaggccaaaagggtacttgacgcccagaatcttcttgatgaaatgatggctaagggacttattccatcagttgttacctacaactcactgattgatgggtggtgcaaaaatggtgatgtagatcgagcaattgcatatctcactaggatgaatgtaaaagaacgggagcccaatgttatcacttacaccactttaatagatgggttatgcaatgccggcaaaccaagtgatgctattagtcttttggtcaatatggaggcaaatgggtgctctccaaatagaataacttttatggctctcattagtggtctgtgcaagtgtcggaagccagatgatgctctgatttatctgcaggaaatggagaggaaggatatgaaacccgatccatcgatctacatagtgctaatagatgcctttataaaaaatatgaatcctaatgaagcttgtgagctactacaaaaggtggtccatgacgagtctcttctagatttaaatattaagagtcgacctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="134881" stop="133576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134581" g_stop="133876" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E333218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134581" e_stop="133876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</genome_strand>
        <mrna_strand>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220022" ref_strand="-" ref_description="SGN-E220022 [cLEL-24-C24](-)">
      <seq>ttttttttttttttttttttgtgatttttttttttgtcttggttttttttatccaagaaggtaataatatttattcttgaccaaacttttacatttaaatttataaattgttttataacttcttccagctttataataaagaacaacatgttccagcaaccaagtaacttagtatctgtacttggtagagaaatcttttggggctatgactagaccccggccttttttggcaccgggatacacagtcttaacaatgtcgatgaactcctgtttatccttaagcgcccagttgatcttgttattgttcccggggccaagaacaatcataatgtgcttgttccggaaaaaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="61772" stop="137494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136322" g_stop="136344" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.435"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136345" i_stop="136863" i_length="519">
            <donor d_prob="0.924" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136864" g_stop="137194" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="354" r_length="331" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E220022" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220022" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136322" e_stop="136344"/>
          <exon e_start="136864" e_stop="137194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTGTTTTTGGGGAAGACTGGTGAGTATTTAAGTGTGTAATGGAAGTGTTACTCCATTGTCCAAATTTCTTGGAACAAAAAAGTATGAAACAGAACGAGACCTTTTTGAGAGAGTGATCATTTTTTAATAAAAACGATTTCGTAATTAATAAATTTAAATTTAAAATTTTTATTTAACTAGAAAATTTGAACCTGAAACCAATAAACTCGAATCTAAAACCTTTAATTAACCAGAAAACTTGAACCTAAAACCTCTGATTTTAACCAAAGAATTCTACCTGTAATCTTTCAAAATCTCTCAAAGGGATTATTATCTCAATTGCATTCAACACCTTAGAATGGTCTTCTACATTATGACTATAATTCATCATTTGATAAGATTATATAAAAAAGAAAAGATTTCTATAGTTTTCACAAATTGTGAAGATTATAATATCTACAAGAGAAACACAACTTAAAAAAAGCCAAATTATATGTCTAAATAAAATTTTAACTTCAAATCATGATTTTAATCTAAGAACATTAAGAATCAGCTTTACATTTTTATTTTT-TCTCAATCAAGATTTATCCAAGAAGCTCATCATAATTATACTTGACCAAACTTTTACATTTCAATTTATAAATTGTTCTATAACTTCTTCCAGCTTCATCATAAAGTACAACATGTTCCAGCAACCAAGTAACTTAGTATCTGTACTTGGTAGAGTAATCTTTTGGTGCTATGACTAGACCCCGGCCTTTTCTGGCACCGCGATACACAGTCTCAACAATGTCGATGAACTCCTGTTTATCCTTAAGCGCCCAGTTGATCTTGTTATTGTTCCCGGTGCCAAGATCAATCATAATGTGCTTGTTCCTGAAGAAGAACAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTGTCTTGGT-TTTTTTTATCCAAGAAGGTAATAATATTTATTCTTGACCAAACTTTTACATTTAAATTTATAAATTGTTTTATAACTTCTTCCAGCTTTATAATAAAGAACAACATGTTCCAGCAACCAAGTAACTTAGTATCTGTACTTGGTAGAGAAATCTTTTGGGGCTATGACTAGACCCCGGCCTTTTTTGGCACCGGGATACACAGTCTTAACAATGTCGATGAACTCCTGTTTATCCTTAAGCGCCCAGTTGATCTTGTTATTGTTCCCGGGGCCAAGAACAATCATAATGTGCTTGTTCCGGAAAAAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219686" ref_strand="+" ref_description="SGN-E219686 [cLEL-24-C24](-)">
      <seq>ggttcctgattttaacacgatgtacgagctgtatgatccatccaccatcatgtttttcttcaggaacaagcccattatgattgatcttggccccgggaacaataacaagatcaactgggcgcttaaggataaacaggagttcatcgccattgttgagactgtgtatcgcggtgccaaaaaaggccggggtctagtcatagccccaaaagatttctctaccaagtacagatactaagttacttggttgctggaacatgttgtcctttatgatgaagctggaagaagttatagaaccatttataaattgaaatgtaaaagtttggtcaagtataattatgatgagcttcttggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="137543" stop="61765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137243" g_stop="136864" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136863" i_stop="136682" i_length="182">
            <donor d_prob="0.048" d_score="0.78"/>
            <acceptor a_prob="0.872" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136681" g_stop="136659" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="403" r_length="23" r_score="0.391"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E219686" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137243" e_stop="136864"/>
          <exon e_start="136681" e_stop="136659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTTTATTTAGACATATAATTTGGCTTTTTTTAAGTTGTGTTTCTCTTGTAGATATTATAATCTTCACAATTTGTGAAAACTATAGAAATCTTTTCTTTTTTATATAATCTTATCAAATGATGAATTATAGTCATAATGTAGAAGACCATTCTA</genome_strand>
        <mrna_strand>GGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTTTTCTTCAGGAACAAGCCCATTATGATTGATCTTGGCCCCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGCCATTGTTGAGACTGTGTATCGCGGTGCCAAAAAAGGCCGGGGTCTAGTCATAGCCCCAAAAGATTTCTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTCCTTTATGATGAAGCTGGAAGAAGTTATAGAACCATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346584" ref_strand="+" ref_description="SGN-E346584 [cTOF-28-J3]">
      <seq>gctgtaagcttcttctctgtttcttttttcttcattttttctgcataaaaagatcgaaatcagctactatttgagagagagatgtcgtatttgttaccacatcttcactctggatgggctgtggatcaagctatccttgcggaagaagaacgccttgtacttattcgatttggccatgattgggatgatacttgtatgcagatggatgaggtgttgtcttcagttgcggagacgatcaagaactttgctgtgatttacctggttgacatcaccgaggttcctgattttaacacgatgtacgagctgtatgatccatccaccatcatgttcttcttcaggaacaagcacattatgattgatcttggcaccgggaacaataacaagatcaactgggcgcttaaggataaacaggagttcatcgacattgttgagactgtgtatcgcggtgccagaaaaggccggggtctagtcatagcaccaaaagattactctaccaagtacagatactaagttacttggttgctggaacatgttgtactttatgatgaagctggaagaagttatagaacaatttataaattgaaatgtaaaagtttggtcaagtataattatgatgagcttcttggataaatcttgattgagaaaaaataaaaatgtaaagctgattcttaatgttcttagattaaaatcatgatttgaagttaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="140066" stop="136509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139767" g_stop="139567" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137317" g_stop="136809" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="710" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E346584" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139767" e_stop="139567"/>
          <exon e_start="137317" e_stop="136809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAGGTAACCTATTTTAAACATATAACTGTGAATTTCTTTAAATTTTTGTATGAAATTTGTTGGGTTTTTAGTAAAAGTTGAAATTCTTATAAGAAATTTGTTGGGTTTTTAGTAAAAGAAGAATCTTGGAATAGATATAGAGGATTGATATAATAGGCCTCAACTAGTTATGGTATGAGCATTTTTCAACATGGAATTGTCAATTTTTTATATGAATTTTGTTGGGTTGTTAGCGAAAAGAAGAATGTTGGAACTTTCATGTAGTAGACTCAACTAACAATTGTCAATTTCTGGATTTTTTTTGTTTTATGGATTGTTAACTAAAAAGAAGAATCTTGGAATAGATATAGGGGAGTCATGTAGTAGACTTGAACTAGTTTTGAATTAGATATAAGCTATTGAACTTTACTTGTGTTGTATTTTTTTCTCTTAAAAGAAGAATTGTTGGATGACTTGATAAAAGAGGGAACTTTAATGGCTAGAATGGAGCAGGCTAGAACACAACTGGTTTGGGATTTGCTTGATTATTTGGAAGGATAACTCTGTTTGAATCGCTAAGTCTTATTAATTTGTTGTTCCTGTTGGTTTAACTGATTATGGCAGAAAAAGGTTATTGATTTAGTGTTTTTATTGGGTTGAATCACCTGATTGTGTTATTGTTGATGCAAATAGAGTGTTGGGATAGTAGTTTCTATTTATCTATTTGTGCTGAATATAACTGCGTTGAGCTTCGGAAGGCATGGTCAGTCCAAAGTCAAGATAAAGGGCGAGTGGTGCAGTAGATTGGATGTTACCGTAATTGTGATGAATCCTTTTAATATGTGGATATAGAGGACCCATACAACCGATCCCCAGCTAGTTTGGAGTTGAGTTGTAGTTTATTGCTTTCAATATTAAGTTCTGTAAAATTAAGTTGCAATCTTTTGATGTGGAGTTGAAAGTGTTACTGTATTCACAAAGGTGGATCCAGAACTTGATGTTTATGGATTCTAGATTCACGCTTTTTGAACGTACTGAGTTCTATATTAGTATTTGTACGTATTAAATAGATTTATGAATTCAACCATACCTAAAACGTACATCCGCCGCAAATTGGTGTGTTAGTTTTGTTTTGGGTTCCTTCTGTGTTTATTTATTCCAGTGATTCAAAAAAAAAATGCCTGTGGAAAAGAGAAGGAATTTTGCTGTTTGAGGATTGTTGATTCTTTGTTATAGCTACCCTTCACTTTTCAAAAAGAAAAAAGAAAGGTAGCTTGGAAACACTTGTAATTTAACAGAAGGCAATGAGTTTGGAATTTAAGTCCTGCAGAGTGCACTTTGAGGCAGGTATTACATATGTTTTCCTTCTCCGAAATCAGATGTCTCATGAGATATTGTGTAATGGAAACTGAATCGATTTGGTGGGTGAACCGGTCCTTTTAGTTTGGAACTGTTTTACTGCCAATTTATTAACTTGAAGTAAAAGTTCTTTGGAAGCTAATCTATATGGTCTTATTTGGTGAATTGGGGTGATAATGTTTACTGATTAAGTTTAGGTATTGGATTATGGAACGACATAGTCGAGGATAGTAAAAGTGTTAGAAGCTGCTATTGAGGTTGAAGATCATGGACTAGGATGATCCAAATCTTGTTATTTTCTCAGAATAACAACAATGACAACAGGACTAGAATTAAGAAAAGAAGTGATGGTGAAAACAATTGAGAAAAGAACAAGCAGAGACAACAAAAATGTGGAATCAAACATAACGAGGCTGTGTATGATCTCATACAGGACTACAATTAGTAACATAAGATCTCACTCGTCCACCTATAAATGGTAATATGCTAATATTTGTTTACATGTTTTATTTTTACCATGTATCCTCTATTACATCTTCCAACAATGTTTGCCCATCGTACTTCATCCTAAAAACAAATAAAAGCAGCAATTTAGTGAGCCATATATCTCAGTACTATAATTTCGGGATCGTCCTGCCATTGATAGAAATCTGAAACCATTGCTTTGAACTGATTTCACATTATTAGTGCTTTTTTAAAGAAAGAGTGAGTGGTTGATAGCCCTTCATTTTTCTTGAAATGTATTTCATCTCATGGATCTGAGTGTGTCTTGTTAATTTTGCATATCAAATGATGCACAATTTATCTATGTTCAAGTTATGGCACATCTCTACACTTCTTTGCCGTGTCTTAGGCGTCTTAACTGTGTCTTGTAAATCCGTAGTTTTGATTGCATATTTTTTCTTGGACTCCAGATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</genome_strand>
        <mrna_strand>GCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298440" ref_strand="+" ref_description="SGN-E298440 [cLET-41-C7]">
      <seq>tgttaccacatcttcactctggatgggctgtggatcaagctatccttgcggaagaagaacgccttgtacttattcgatttggccatgattgggatgatacttgtatgcagatggatgaggtgttgtcttcagttgcggagacgatcaagaactttgctgtgatttacctggttgacatcaccgaggttcctgattttaacacgatgtacgagctgtatgatccatccaccatcatgttcttcttcaggaacaagcacattatgattgatcttggcaccgggaacaataacaagatcaactgggcgcttaaggataaacaggagttcatcgacattgttgagactgtgtatcgcggtgccagaaaaggccggggtctagtcatagcaccaaaagattactctaccaagtacagatactaagttacttggttgctggaacatgttgtactttatgatgaagctggaagaagttatagaacaatttataaattgaaatgtaaaagtttggtcaagtataattatgatgagcttcttggataaatcttgattgagaaaaaataaaaatgtaaagctgattcttaatgttcttagattaaaatcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="139976" stop="136524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139676" g_stop="139567" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137317" g_stop="136824" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="604" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E298440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139676" e_stop="139567"/>
          <exon e_start="137317" e_stop="136824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAGGTAACCTATTTTAAACATATAACTGTGAATTTCTTTAAATTTTTGTATGAAATTTGTTGGGTTTTTAGTAAAAGTTGAAATTCTTATAAGAAATTTGTTGGGTTTTTAGTAAAAGAAGAATCTTGGAATAGATATAGAGGATTGATATAATAGGCCTCAACTAGTTATGGTATGAGCATTTTTCAACATGGAATTGTCAATTTTTTATATGAATTTTGTTGGGTTGTTAGCGAAAAGAAGAATGTTGGAACTTTCATGTAGTAGACTCAACTAACAATTGTCAATTTCTGGATTTTTTTTGTTTTATGGATTGTTAACTAAAAAGAAGAATCTTGGAATAGATATAGGGGAGTCATGTAGTAGACTTGAACTAGTTTTGAATTAGATATAAGCTATTGAACTTTACTTGTGTTGTATTTTTTTCTCTTAAAAGAAGAATTGTTGGATGACTTGATAAAAGAGGGAACTTTAATGGCTAGAATGGAGCAGGCTAGAACACAACTGGTTTGGGATTTGCTTGATTATTTGGAAGGATAACTCTGTTTGAATCGCTAAGTCTTATTAATTTGTTGTTCCTGTTGGTTTAACTGATTATGGCAGAAAAAGGTTATTGATTTAGTGTTTTTATTGGGTTGAATCACCTGATTGTGTTATTGTTGATGCAAATAGAGTGTTGGGATAGTAGTTTCTATTTATCTATTTGTGCTGAATATAACTGCGTTGAGCTTCGGAAGGCATGGTCAGTCCAAAGTCAAGATAAAGGGCGAGTGGTGCAGTAGATTGGATGTTACCGTAATTGTGATGAATCCTTTTAATATGTGGATATAGAGGACCCATACAACCGATCCCCAGCTAGTTTGGAGTTGAGTTGTAGTTTATTGCTTTCAATATTAAGTTCTGTAAAATTAAGTTGCAATCTTTTGATGTGGAGTTGAAAGTGTTACTGTATTCACAAAGGTGGATCCAGAACTTGATGTTTATGGATTCTAGATTCACGCTTTTTGAACGTACTGAGTTCTATATTAGTATTTGTACGTATTAAATAGATTTATGAATTCAACCATACCTAAAACGTACATCCGCCGCAAATTGGTGTGTTAGTTTTGTTTTGGGTTCCTTCTGTGTTTATTTATTCCAGTGATTCAAAAAAAAAATGCCTGTGGAAAAGAGAAGGAATTTTGCTGTTTGAGGATTGTTGATTCTTTGTTATAGCTACCCTTCACTTTTCAAAAAGAAAAAAGAAAGGTAGCTTGGAAACACTTGTAATTTAACAGAAGGCAATGAGTTTGGAATTTAAGTCCTGCAGAGTGCACTTTGAGGCAGGTATTACATATGTTTTCCTTCTCCGAAATCAGATGTCTCATGAGATATTGTGTAATGGAAACTGAATCGATTTGGTGGGTGAACCGGTCCTTTTAGTTTGGAACTGTTTTACTGCCAATTTATTAACTTGAAGTAAAAGTTCTTTGGAAGCTAATCTATATGGTCTTATTTGGTGAATTGGGGTGATAATGTTTACTGATTAAGTTTAGGTATTGGATTATGGAACGACATAGTCGAGGATAGTAAAAGTGTTAGAAGCTGCTATTGAGGTTGAAGATCATGGACTAGGATGATCCAAATCTTGTTATTTTCTCAGAATAACAACAATGACAACAGGACTAGAATTAAGAAAAGAAGTGATGGTGAAAACAATTGAGAAAAGAACAAGCAGAGACAACAAAAATGTGGAATCAAACATAACGAGGCTGTGTATGATCTCATACAGGACTACAATTAGTAACATAAGATCTCACTCGTCCACCTATAAATGGTAATATGCTAATATTTGTTTACATGTTTTATTTTTACCATGTATCCTCTATTACATCTTCCAACAATGTTTGCCCATCGTACTTCATCCTAAAAACAAATAAAAGCAGCAATTTAGTGAGCCATATATCTCAGTACTATAATTTCGGGATCGTCCTGCCATTGATAGAAATCTGAAACCATTGCTTTGAACTGATTTCACATTATTAGTGCTTTTTTAAAGAAAGAGTGAGTGGTTGATAGCCCTTCATTTTTCTTGAAATGTATTTCATCTCATGGATCTGAGTGTGTCTTGTTAATTTTGCATATCAAATGATGCACAATTTATCTATGTTCAAGTTATGGCACATCTCTACACTTCTTTGCCGTGTCTTAGGCGTCTTAACTGTGTCTTGTAAATCCGTAGTTTTGATTGCATATTTTTTCTTGGACTCCAGATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGAT</genome_strand>
        <mrna_strand>TGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273866" ref_strand="+" ref_description="SGN-E273866 [cLEN-7-E8]">
      <seq>ttcttctctgtttcttttttcttcattttttctgcataaaaagatcgaaatcagctactatttgagagagagatgtcgtatttgttaccacatcttcactctggatgggctgtggatcaagctatccttgcggaagaagaacgccttgtacttattcgatttggccatgattgggatgatacttgtatgcagatggatgaggtgttgtcttcagttgcggagacgatcaagaactttgctgtgatttacctggttgacatcaccgaggttcctgattttaacacgatgtacgagctgtatgatccatccaccatcatgttcttcttcaggaacaagcacattatgattgatcttggcaccgggaacaataacaagatcaactgggcgcttaaggataaacaggagttcatcgacattgttgagactgtgtatcgcggtgccagaaaaggccggggtctagtcatagcaccaaaagattactctaccaagtacagatactaagttacttggttgctggaacatgttgtactttatgatgaagctggaagaagttatagaacaatttataaattgaaatgtaaaagtttggtcaagtataattatgatgagcttcttggataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="-" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="140058" stop="136586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139758" g_stop="139567" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137317" g_stop="136886" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="624" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="-" ref_id="SGN-E273866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139758" e_stop="139567"/>
          <exon e_start="137317" e_stop="136886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAGGTAACCTATTTTAAACATATAACTGTGAATTTCTTTAAATTTTTGTATGAAATTTGTTGGGTTTTTAGTAAAAGTTGAAATTCTTATAAGAAATTTGTTGGGTTTTTAGTAAAAGAAGAATCTTGGAATAGATATAGAGGATTGATATAATAGGCCTCAACTAGTTATGGTATGAGCATTTTTCAACATGGAATTGTCAATTTTTTATATGAATTTTGTTGGGTTGTTAGCGAAAAGAAGAATGTTGGAACTTTCATGTAGTAGACTCAACTAACAATTGTCAATTTCTGGATTTTTTTTGTTTTATGGATTGTTAACTAAAAAGAAGAATCTTGGAATAGATATAGGGGAGTCATGTAGTAGACTTGAACTAGTTTTGAATTAGATATAAGCTATTGAACTTTACTTGTGTTGTATTTTTTTCTCTTAAAAGAAGAATTGTTGGATGACTTGATAAAAGAGGGAACTTTAATGGCTAGAATGGAGCAGGCTAGAACACAACTGGTTTGGGATTTGCTTGATTATTTGGAAGGATAACTCTGTTTGAATCGCTAAGTCTTATTAATTTGTTGTTCCTGTTGGTTTAACTGATTATGGCAGAAAAAGGTTATTGATTTAGTGTTTTTATTGGGTTGAATCACCTGATTGTGTTATTGTTGATGCAAATAGAGTGTTGGGATAGTAGTTTCTATTTATCTATTTGTGCTGAATATAACTGCGTTGAGCTTCGGAAGGCATGGTCAGTCCAAAGTCAAGATAAAGGGCGAGTGGTGCAGTAGATTGGATGTTACCGTAATTGTGATGAATCCTTTTAATATGTGGATATAGAGGACCCATACAACCGATCCCCAGCTAGTTTGGAGTTGAGTTGTAGTTTATTGCTTTCAATATTAAGTTCTGTAAAATTAAGTTGCAATCTTTTGATGTGGAGTTGAAAGTGTTACTGTATTCACAAAGGTGGATCCAGAACTTGATGTTTATGGATTCTAGATTCACGCTTTTTGAACGTACTGAGTTCTATATTAGTATTTGTACGTATTAAATAGATTTATGAATTCAACCATACCTAAAACGTACATCCGCCGCAAATTGGTGTGTTAGTTTTGTTTTGGGTTCCTTCTGTGTTTATTTATTCCAGTGATTCAAAAAAAAAATGCCTGTGGAAAAGAGAAGGAATTTTGCTGTTTGAGGATTGTTGATTCTTTGTTATAGCTACCCTTCACTTTTCAAAAAGAAAAAAGAAAGGTAGCTTGGAAACACTTGTAATTTAACAGAAGGCAATGAGTTTGGAATTTAAGTCCTGCAGAGTGCACTTTGAGGCAGGTATTACATATGTTTTCCTTCTCCGAAATCAGATGTCTCATGAGATATTGTGTAATGGAAACTGAATCGATTTGGTGGGTGAACCGGTCCTTTTAGTTTGGAACTGTTTTACTGCCAATTTATTAACTTGAAGTAAAAGTTCTTTGGAAGCTAATCTATATGGTCTTATTTGGTGAATTGGGGTGATAATGTTTACTGATTAAGTTTAGGTATTGGATTATGGAACGACATAGTCGAGGATAGTAAAAGTGTTAGAAGCTGCTATTGAGGTTGAAGATCATGGACTAGGATGATCCAAATCTTGTTATTTTCTCAGAATAACAACAATGACAACAGGACTAGAATTAAGAAAAGAAGTGATGGTGAAAACAATTGAGAAAAGAACAAGCAGAGACAACAAAAATGTGGAATCAAACATAACGAGGCTGTGTATGATCTCATACAGGACTACAATTAGTAACATAAGATCTCACTCGTCCACCTATAAATGGTAATATGCTAATATTTGTTTACATGTTTTATTTTTACCATGTATCCTCTATTACATCTTCCAACAATGTTTGCCCATCGTACTTCATCCTAAAAACAAATAAAAGCAGCAATTTAGTGAGCCATATATCTCAGTACTATAATTTCGGGATCGTCCTGCCATTGATAGAAATCTGAAACCATTGCTTTGAACTGATTTCACATTATTAGTGCTTTTTTAAAGAAAGAGTGAGTGGTTGATAGCCCTTCATTTTTCTTGAAATGTATTTCATCTCATGGATCTGAGTGTGTCTTGTTAATTTTGCATATCAAATGATGCACAATTTATCTATGTTCAAGTTATGGCACATCTCTACACTTCTTTGCCGTGTCTTAGGCGTCTTAACTGTGTCTTGTAAATCCGTAGTTTTGATTGCATATTTTTTCTTGGACTCCAGATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATC</genome_strand>
        <mrna_strand>TTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258522" ref_strand="+" ref_description="SGN-E258522 [cLEG-47-C16]">
      <seq>gtgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcaacgatatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="142525" stop="143367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142824" g_stop="143219" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E258522" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142824" e_stop="143219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTATCAACCTTGACCACTTTATCTTCTGGAAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTTGGAGATTTCAATAAATTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCACCTTTTTCCATTCGTTTAGCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATCGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTCAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTCCTGCAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGTCTGCTCTTTCAGCAACATCCTCTT</genome_strand>
        <mrna_strand>GTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAACGATATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258424" ref_strand="+" ref_description="SGN-E258424 [cLEG-47-M4]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0127L14-bd3tp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0127L14.1" temp_strand="+" temp_description="C04SLm0127L14.1  CU856252.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0127L14 sequenced_by:sanger upload_account_name:uk">
        <position start="142527" stop="143367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142826" g_stop="143294" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0127L14.1" gen_strand="+" ref_id="SGN-E258424" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0127L14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142826" e_stop="143294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTATCAACCTTGACCACTTTATCTTCTGGAAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTTGGAGATTTCAATAAATTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCACCTTTTTCCATTCGTTTAGCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATCGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTCAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTCCTGCAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGTCTGCTCTTTCAGCAACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCCTTCTCGCCATCCGGGAATGCTCTTTTCAAACTTTCCCATGCTTCTC</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>437</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1292" PGL_stop="1844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1292" e_stop="1844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1292" e_stop="1844" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1292" stop="1779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1293" stop="1844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1293" stop="1838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAG</gDNA_template>
            <first_frame> K  R  M  *  I  *  Q  K  G  T  A  *  K  I  I  L  I  L  K  H  *  R  T  F  R  N  G  C  T  N  K  L  S  G  M  N  Y  K  I  *  T  P  S  N  F  G  L  P  K  S  I  P  N  I  F  K  S  *  E  V  T  Q  E  K  L  A  T  S  *  D  S  K  *  I  Y  V  V  S  T  I  T  L  Q  G  I  T  L  L  S  I  K  T  E  Q  F  S  *  R  P  S  L  G  A  R  F  N  K  Q  D  F  G  A  D  S  L  F  L  S  L  V  N  L  S  W  S  S  I  I  K  I  R  R  W  F  R  P  N  S  S  D  T  Y  F  M  S  P  L  *  R  A  Y  L  T  R  V  D  D  T  C  P  L  S  L  P  S  L  E  F  K  S  P  E  I  *  F  V  S  M  T  E  L  I  I  *  </first_frame>
            <second_frame>  K  E  C  E  F  S  R  K  V  P  L  K  K  S  Y  S  Y  L  N  T  E  G  H  S  E  M  V  A  L  T  N  Y  R  E  *  I  T  K  F  E  P  L  L  T  L  D  C  Q  S  Q  Y  P  I  S  L  S  L  E  K  *  H  R  K  N  *  L  P  H  R  I  P  N  E  Y  M  L  Y  Q  L  L  L  C  R  E  *  H  S  C  Q  S  K  L  N  N  S  H  K  D  L  P  *  V  Q  D  S  T  N  K  T  L  E  Q  T  A  Y  F  S  H  *  *  T  F  L  G  L  P  S  L  K  *  D  D  G  S  D  L  I  A  L  T  H  I  S  C  L  P  C  E  G  H  T  *  H  E  *  M  I  L  A  L  S  L  Y  R  L  *  S  S  S  L  Q  K  F  D  L  C  P  *  Q  N  *  L  Y  K </second_frame>
            <third_frame>   K  N  V  N  L  A  E  R  Y  R  L  K  N  H  T  H  T  *  T  L  K  D  I  Q  K  W  L  H  *  Q  I  I  G  N  E  L  Q  N  L  N  P  F  *  L  W  T  A  K  V  N  T  Q  Y  L  *  V  L  R  S  N  T  G  K  T  S  Y  L  I  G  F  Q  M  N  I  C  C  I  N  Y  Y  S  A  G  N  N  T  L  V  N  Q  N  *  T  I  L  I  K  T  F  L  R  C  K  I  Q  Q  T  R  L  W  S  R  Q  P  I  S  L  T  S  K  P  F  L  V  F  H  H  *  N  K  T  M  V  P  T  *  *  L  *  H  I  F  H  V  S  L  V  K  G  I  P  N  T  S  R  *  Y  L  P  S  L  F  T  V  F  R  V  Q  V  S  R  N  L  I  C  V  H  D  R  I  D  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6477" PGL_stop="1306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6477" e_stop="6201"/>
            <exon e_start="4342" e_stop="4290"/>
            <exon e_start="3202" e_stop="3067"/>
            <exon e_start="2188" e_stop="2013"/>
            <exon e_start="1925" e_stop="1764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6477" e_stop="6201" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.609">
            <gDNA_intron_boundary i_start="6200" i_stop="4343" i_length="1858"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4342" e_stop="4290" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.790">
            <gDNA_intron_boundary i_start="4289" i_stop="3203" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3202" e_stop="3067" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.846">
            <gDNA_intron_boundary i_start="3066" i_stop="2189" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2188" e_stop="2013" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.950">
            <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1925" e_stop="1764" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6477" stop="6201"/>
              <exon start="4342" stop="4290"/>
              <exon start="3202" stop="3067"/>
              <exon start="2188" stop="2013"/>
              <exon start="1925" stop="1764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6477" stop="6201"/>
              <exon start="4342" stop="4290"/>
              <exon start="3202" stop="3067"/>
              <exon start="2188" stop="2013"/>
              <exon start="1925" stop="1802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6476" stop="6201"/>
              <exon start="4342" stop="4290"/>
              <exon start="3202" stop="3067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6424" stop="6201"/>
              <exon start="4342" stop="4290"/>
              <exon start="3202" stop="3067"/>
              <exon start="2188" stop="2127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398108" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG : CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG : GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG : GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG : GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAG</gDNA_template>
            <first_frame> *  A  E  S  I  S  I  F  F  S  S  D  E  N  *  E  C  *  V  G  L  G  V  I  F  I  A  V  L  T  N  L  P  P  F  *  L  L  L  H  *  P  Q  N  L  L  S  K  I  L  E  S  D  *  G  A  G  T  V  I  V  L  V  *  A  I  K  F  V  I  L  G  S  I  V  F  N  P  N  L  Q  I  P  K  A  L  C  F  L  K  L  *   : A  N  L  E  Q  M  R  S  L  H  Q  K  D  C  Q  F  L  Q  :  A  G  *  *  L  W  G  N  L  M  H  S  I  L  V  T  A  S  L  Q  F  K  Q  Q  R  E  E  F  H  F  F  F  H  L  L  G  W  R  K  Y  L  D  G  N  Q   : G  L  P  L  L  L  N  V  I  A  K  G  F  F  R  L  G  L  L  I  A  V  V  *  C  Q  G  N  S  R  *  I  F  R  K  F  D  I  L  R  L  V  S  L  W  R  S  F  P  K  S  W  E  Y  E  E  L  L  L  :  A  R  I  I  V  L  D  I  E  L  L  V  M  H  Q  T  L  *  S  S  V  R  S  M  D  *  R  L  I  *  S  I  L  S  W  T  Q  I  K  F  L  E  T  *  T  L  K  T  V  K  R  E  G  K </first_frame>
            <second_frame>  R  P  N  P  S  Q  F  S  F  L  L  M  K  I  K  N  V  E  W  V  S  V  *  F  S  L  Q  C  S  P  I  C  H  H  F  S  C  F  Y  T  D  L  R  I  F  F  Q  K  F  *  N  Q  I  E  E  Q  E  Q  *  *  F  L  F  E  Q  *  S  L  *  F  W  G  Q  L  C  S  T  Q  I  F  R  Y  P  K  L  F  A  F  *  N  F  E  :  P  I  W  N  R  *  G  A  S  I  R  K  I  A  N  S  Y  R :   R  D  S  S  S  G  E  I  *  C  T  P  Y  W  S  P  R  A  C  N  S  S  S  K  E  R  N  S  I  S  S  F  I  C  W  D  G  G  S  T  W  M  G  T  K  :  G  S  H  C  C  *  M  *  S  Q  K  D  S  F  V  L  G  S  L  L  R  *  Y  N  A  K  G  T  P  D  R  F  F  E  S  S  I  S  Y  A  L  S  V  C  G  E  A  F  Q  R  A  G  S  T  R  S  C  C  W :   R  E  L  S  F  W  I  *  S  C  W  *  C  I  R  P  C  E  A  L  *  G  V  W  I  R  G  L  Y  N  Q  F  C  H  G  H  K  S  N  F  W  R  L  E  L  *  R  R  *  R  E  R  A   </second_frame>
            <third_frame>   G  R  I  H  L  N  F  L  F  F  *  *  K  L  R  M  L  S  G  S  R  C  N  F  H  C  S  A  H  Q  F  A  T  I  L  A  A  S  T  L  T  S  E  S  S  F  K  N  F  R  I  R  L  R  S  R  N  S  N  S  S  C  L  S  N  K  V  C  D  F  G  V  N  C  V  Q  P  K  S  S  D  T  Q  S  S  L  L  S  E  T  L  S :   Q  S  G  T  D  E  E  P  P  S  E  R  L  P  I  L  T   : G  G  I  V  A  L  G  K  F  D  A  L  H  I  G  H  R  E  L  A  I  Q  A  A  K  R  G  I  P  F  L  L  S  F  V  G  M  A  E  V  L  G  W  E  P  R :   A  P  I  V  A  E  C  D  R  K  R  I  L  S  S  W  A  P  Y  C  G  S  I  M  P  R  E  L  Q  I  D  F  S  K  V  R  Y  L  T  P  C  Q  F  V  E  K  L  S  K  E  L  G  V  R  G  V  V  A   : G  E  N  Y  R  F  G  Y  R  A  A  G  D  A  S  D  L  V  K  L  C  E  E  Y  G  L  E  A  Y  I  I  N  S  V  M  D  T  N  Q  I  S  G  D  L  N  S  K  D  G  K  E  R  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6439" stop="6201"/>
                    <exon start="4342" stop="4290"/>
                    <exon start="3202" stop="3067"/>
                    <exon start="2188" stop="2013"/>
                    <exon start="1925" stop="1765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRMLSGSRCNFHCSAHQFATILAASTLTSESSFKNFRIRLRSRNSNSSCLSNKVCDFGVNCVQPKSSDTQSSLLSETLSQSGTDEEPPSERLPILTGGIVALGKFDALHIGHRELAIQAAKRGIPFLLSFVGMAEVLGWEPRAPIVAECDRKRILSSWAPYCGSIMPRELQIDFSKVRYLTPCQFVEKLSKELGVRGVVAGENYRFGYRAAGDASDLVKLCEEYGLEAYIINSVMDTNQISGDLNSKDGKERGQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2193" e_stop="2013"/>
            <exon e_start="1925" e_stop="1306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2193" e_stop="2013" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.950">
            <gDNA_intron_boundary i_start="2012" i_stop="1926" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1925" e_stop="1306" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2193" stop="2013"/>
              <exon start="1925" stop="1321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2189" stop="2013"/>
              <exon start="1925" stop="1306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG : GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</gDNA_template>
            <first_frame> P  R  A  P  I  V  A  E  C  D  R  K  R  I  L  S  S  W  A  P  Y  C  G  S  I  M  P  R  E  L  Q  I  D  F  S  K  V  R  Y  L  T  P  C  Q  F  V  E  K  L  S  K  E  L  G  V  R  G  V  V  A   : G  E  N  Y  R  F  G  Y  R  A  A  G  D  A  S  D  L  V  K  L  C  E  E  Y  G  L  E  A  Y  I  I  N  S  V  M  D  T  N  Q  I  S  G  D  L  N  S  K  D  G  K  E  R  G  Q  V  S  S  T  R  V  R  Y  A  L  H  K  G  D  M  K  Y  V  S  E  L  L  G  R  N  H  R  L  I  L  M  M  E  D  Q  E  R  F  T  S  E  R  N  R  L  S  A  P  K  S  C  L  L  N  L  A  P  K  E  G  L  Y  E  N  C  S  V  L  I  D  K  S  V  I  P  C  R  V  I  V  D  T  T  Y  I  H  L  E  S  Y  E  V  A  S  F  S  C  V  T  S  Q  D  L  K  I  L  G  I  D  F  G  S  P  K  L  E  G  V  Q  I  L  *  F  I  P  D  N  L  L  V  Q  P  F  L  N  V  L  Q  C  L  S  M  S  M  I  F  *  A  V  P  F  C  * </first_frame>
            <second_frame>  P  G  L  P  L  L  L  N  V  I  A  K  G  F  F  R  L  G  L  L  I  A  V  V  *  C  Q  G  N  S  R  *  I  F  R  K  F  D  I  L  R  L  V  S  L  W  R  S  F  P  K  S  W  E  Y  E  E  L  L  L  :  A  R  I  I  V  L  D  I  E  L  L  V  M  H  Q  T  L  *  S  S  V  R  S  M  D  *  R  L  I  *  S  I  L  S  W  T  Q  I  K  F  L  E  T  *  T  L  K  T  V  K  R  E  G  K  Y  H  L  L  V  L  G  M  P  F  T  R  E  T  *  N  M  C  Q  S  Y  *  V  G  T  I  V  L  F  *  *  W  K  T  K  K  G  L  L  V  R  E  I  G  C  L  L  Q  S  L  V  C  *  I  L  H  L  R  K  V  F  M  R  I  V  Q  F  *  L  T  R  V  L  F  P  A  E  *  *  L  I  Q  H  I  F  I  W  N  P  M  R  *  L  V  F  P  V  L  L  L  K  T  *  R  Y  W  V  L  T  L  A  V  Q  S  *  K  G  F  K  F  C  N  S  F  P  I  I  C  *  C  N  H  F  *  M  S  F  S  V  *  V  *  V  *  F  F  K  R  Y  L  S  A   </second_frame>
            <third_frame>   Q  G  S  H  C  C  *  M  *  S  Q  K  D  S  F  V  L  G  S  L  L  R  *  Y  N  A  K  G  T  P  D  R  F  F  E  S  S  I  S  Y  A  L  S  V  C  G  E  A  F  Q  R  A  G  S  T  R  S  C  C  W :   R  E  L  S  F  W  I  *  S  C  W  *  C  I  R  P  C  E  A  L  *  G  V  W  I  R  G  L  Y  N  Q  F  C  H  G  H  K  S  N  F  W  R  L  E  L  *  R  R  *  R  E  R  A  S  I  I  Y  S  C  *  V  C  P  S  Q  G  R  H  E  I  C  V  R  A  I  R  S  E  P  S  S  Y  F  N  D  G  R  P  R  K  V  Y  *  *  E  K  *  A  V  C  S  K  V  L  F  V  E  S  C  T  *  G  R  S  L  *  E  L  F  S  F  D  *  Q  E  C  Y  S  L  Q  S  N  S  *  Y  N  I  Y  S  F  G  I  L  *  G  S  *  F  F  L  C  Y  F  S  R  L  K  D  I  G  Y  *  L  W  Q  S  K  V  R  R  G  S  N  F  V  I  H  S  R  *  F  V  S  A  T  I  S  E  C  P  S  V  F  K  Y  E  Y  D  F  L  S  G  T  F  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2193" stop="2013"/>
                    <exon start="1925" stop="1399"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRAPIVAECDRKRILSSWAPYCGSIMPRELQIDFSKVRYLTPCQFVEKLSKELGVRGVVAGENYRFGYRAAGDASDLVKLCEEYGLEAYIINSVMDTNQISGDLNSKDGKERGQVSSTRVRYALHKGDMKYVSELLGRNHRLILMMEDQERFTSERNRLSAPKSCLLNLAPKEGLYENCSVLIDKSVIPCRVIVDTTYIHLESYEVASFSCVTSQDLKILGIDFGSPKLEGVQIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12439" PGL_stop="10207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12434" e_stop="12392"/>
            <exon e_start="11350" e_stop="10207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12434" e_stop="12392" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12391" i_stop="11351" i_length="1041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11350" e_stop="10207" e_length="1144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12434" stop="12392"/>
              <exon start="11350" stop="10660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12434" stop="12392"/>
              <exon start="11350" stop="10666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12433" stop="12392"/>
              <exon start="11350" stop="10945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11261" stop="10762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10874" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10804" stop="10215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT : GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</gDNA_template>
            <first_frame> L  N  *  N  N  Y  L  A  F  I  R  S  G  C   : W  K  C  H  S  *  R  I  V  S  L  I  L  K  P  I  L  W  C  *  L  Y  R  A  H  Q  H  F  Q  V  W  S  *  N  L  K  H  S  V  S  Y  F  Q  A  F  D  D  S  D  *  D  L  I  L  V  T  L  T  R  G  F  V  *  L  I  R  V  K  W  Q  S  F  L  D  I  Q  H  A  D  N  Y  C  K  C  S  F  Q  L  Y  S  S  M  F  P  S  T  F  W  H  L  S  F  M  G  S  R  M  Y  L  L  S  R  F  *  *  A  N  I  M  Y  *  Q  C  F  A  P  *  *  N  T  L  L  K  S  I  S  F  P  A  *  R  N  I  G  G  *  V  I  L  A  S  Q  W  L  S  S  E  K  S  *  G  S  W  Q  L  *  Q  Q  A  K  P  S  L  I  *  *  R  F  I  M  R  K  I  I  S  W  L  R  M  G  S  I  D  L  S  G  I  P  V  T  V  V  S  S  S  G  L  L  V  H  K  *  C  Y  V  I  Q  Y  Q  P  L  H  S  Q  L  L  C  G  N  S  S  R  E  G  Y  L  T  R  S  F  S  S  S  S  S  L  V  L  T  T  K  I  I  *  E  K  F  L  L  V  F  H  L  *  G  D  Y  I  L  F  S  A  L  Y  I  H  A  *  R  H  L  L  I  G  A  E  I  T  L  F  M  N  F  I  F  L  D  T  L  Y  S  F  H  N  M  K  F  A  R  K  R  F  L  L  D  I  T  S  E  V  M  L  L  L  T  L  V  *  R  V  Y  L  I  C  I  I  M  F  S  S  Y  H  V  F  V  K  T  *  V  N  C  S  C  G  E  L  *  V  I  T  V  F  V  F  M  A  *  W  D  S  V  F  I  I  L  L  R  R  R  K  A   </first_frame>
            <second_frame>  L  I  K  I  I  T  S  P  S  S  D  L  V  V  :  G  N  V  I  L  K  G  *  F  H  *  F  *  S  P  F  C  G  A  N  C  T  E  L  I  N  I  F  R  F  G  V  E  I  *  N  I  A  Y  H  I  F  K  P  L  M  T  Q  T  E  T  S  F  *  *  L  *  R  E  V  L  F  D  L  F  A  *  N  G  R  A  F  W  I  Y  S  M  Q  T  I  I  A  N  V  H  F  N  Y  I  L  P  C  F  R  V  H  S  G  T  C  L  S  W  E  V  E  C  I  F  *  V  A  F  D  K  Q  T  L  C  T  S  N  V  L  L  L  D  R  I  P  Y  *  N  L  F  L  S  R  L  K  G  I  L  V  D  K  *  F  W  P  R  N  G  C  P  R  R  N  H  K  E  V  G  N  C  D  S  R  P  S  L  H  S  S  N  K  G  L  S  *  G  K  S  S  V  G  Y  E  W  D  L  *  I  C  P  A  S  R  L  L  W  F  L  H  L  V  C  W  Y  T  N  N  A  M  *  S  N  I  N  H  C  I  H  S  C  C  V  E  I  L  L  G  K  D  T  L  R  G  V  F  P  Q  A  V  L  W  F  *  L  R  R  L  Y  E  K  S  S  F  W  Y  S  T  C  E  V  I  I  S  S  S  V  L  Y  I  F  M  P  N  V  I  C  S  S  V  L  R  *  H  C  L  *  I  L  S  S  *  T  L  F  T  V  F  I  T  *  S  S  P  E  K  G  S  S  *  I  *  L  L  R  *  C  F  Y  *  P  L  Y  S  A  F  I  L  F  V  S  S  C  F  R  R  I  M  S  L  L  R  L  R  *  T  V  L  V  G  S  C  K  L  *  L  Y  L  Y  L  W  L  D  G  T  V  F  L  S  Y  S  *  G  E  E  R  L  </second_frame>
            <third_frame>   *  L  K  *  L  P  R  L  H  Q  I  W  L  L :   E  M  S  F  L  K  D  S  F  I  D  S  E  A  H  F  V  V  L  I  V  Q  S  S  S  T  F  S  G  L  E  L  K  F  E  T  *  R  I  I  F  S  S  L  *  *  L  R  L  R  P  H  F  S  N  F  N  E  R  F  C  L  T  Y  S  R  E  M  A  E  L  F  G  Y  T  A  C  R  Q  L  L  Q  M  F  I  S  I  I  F  F  H  V  S  E  Y  I  L  A  L  V  F  H  G  K  S  N  V  S  F  K  S  L  L  I  S  K  H  Y  V  L  A  M  F  C  S  L  I  E  Y  L  I  E  I  Y  F  F  P  G  L  K  E  Y  W  W  I  S  N  F  G  L  A  M  V  V  L  G  E  I  I  R  K  L  A  I  V  T  A  G  Q  A  F  T  H  L  I  K  V  Y  H  E  E  N  H  Q  L  V  T  N  G  I  Y  R  F  V  R  H  P  G  Y  C  G  F  F  I  W  S  V  G  T  Q  I  M  L  C  N  P  I  S  T  I  A  F  T  V  V  V  W  K  F  F  S  G  R  I  P  Y  E  E  F  F  L  K  Q  F  F  G  S  D  Y  E  D  Y  M  R  K  V  P  S  G  I  P  L  V  R  *  L  Y  P  L  Q  C  S  I  Y  S  C  L  T  S  S  A  H  R  C  *  D  N  T  V  Y  E  F  Y  L  L  R  H  S  L  Q  F  S  *  H  E  V  R  Q  K  K  V  P  P  R  Y  N  F  *  G  D  A  S  I  N  P  C  I  A  R  L  S  Y  L  Y  H  H  V  F  V  V  S  C  L  C  *  D  L  G  K  L  F  L  W  G  A  V  S  Y  N  C  I  C  I  Y  G  L  M  G  Q  C  F  Y  H  T  L  K  E  K  K  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11211" stop="10555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLRPHFSNFNERFCLTYSREMAELFGYTACRQLLQMFISIIFFHVSEYILALVFHGKSNVSFKSLLISKHYVLAMFCSLIEYLIEIYFFPGLKEYWWISNFGLAMVVLGEIIRKLAIVTAGQAFTHLIKVYHEENHQLVTNGIYRFVRHPGYCGFFIWSVGTQIMLCNPISTIAFTVVVWKFFSGRIPYEEFFLKQFFGSDYEDYMRKVPSGIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12439" e_stop="12392"/>
            <exon e_start="12240" e_stop="12168"/>
            <exon e_start="11264" e_stop="10207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.993" e_score="0.896"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.945"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="12439" e_stop="12392" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12391" i_stop="12241" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="12240" e_stop="12168" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12167" i_stop="11265" i_length="903"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="11264" e_stop="10207" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12439" stop="12392"/>
              <exon start="12240" stop="12168"/>
              <exon start="11264" stop="10850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11261" stop="10762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10874" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10804" stop="10215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT : GGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAG : GTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</gDNA_template>
            <first_frame> F  L  L  I  K  I  I  T  S  P  S  S  D  L  V  V  :  G  *  A  A  F  A  C  V  H  L  D  *  F  M  G  *  L  I  V  *  L  T  G  T   : G  L  E  L  K  F  E  T  *  R  I  I  F  S  S  L  *  *  L  R  L  R  P  H  F  S  N  F  N  E  R  F  C  L  T  Y  S  R  E  M  A  E  L  F  G  Y  T  A  C  R  Q  L  L  Q  M  F  I  S  I  I  F  F  H  V  S  E  Y  I  L  A  L  V  F  H  G  K  S  N  V  S  F  K  S  L  L  I  S  K  H  Y  V  L  A  M  F  C  S  L  I  E  Y  L  I  E  I  Y  F  F  P  G  L  K  E  Y  W  W  I  S  N  F  G  L  A  M  V  V  L  G  E  I  I  R  K  L  A  I  V  T  A  G  Q  A  F  T  H  L  I  K  V  Y  H  E  E  N  H  Q  L  V  T  N  G  I  Y  R  F  V  R  H  P  G  Y  C  G  F  F  I  W  S  V  G  T  Q  I  M  L  C  N  P  I  S  T  I  A  F  T  V  V  V  W  K  F  F  S  G  R  I  P  Y  E  E  F  F  L  K  Q  F  F  G  S  D  Y  E  D  Y  M  R  K  V  P  S  G  I  P  L  V  R  *  L  Y  P  L  Q  C  S  I  Y  S  C  L  T  S  S  A  H  R  C  *  D  N  T  V  Y  E  F  Y  L  L  R  H  S  L  Q  F  S  *  H  E  V  R  Q  K  K  V  P  P  R  Y  N  F  *  G  D  A  S  I  N  P  C  I  A  R  L  S  Y  L  Y  H  H  V  F  V  V  S  C  L  C  *  D  L  G  K  L  F  L  W  G  A  V  S  Y  N  C  I  C  I  Y  G  L  M  G  Q  C  F  Y  H  T  L  K  E  K  K  G  F </first_frame>
            <second_frame>  F  S  *  L  K  *  L  P  R  L  H  Q  I  W  L  L :   V  E  P  P  L  L  V  C  I  S  I  N  L  W  G  S  L  S  S  S  S  Q  V  Q  :  V  W  S  *  N  L  K  H  S  V  S  Y  F  Q  A  F  D  D  S  D  *  D  L  I  L  V  T  L  T  R  G  F  V  *  L  I  R  V  K  W  Q  S  F  L  D  I  Q  H  A  D  N  Y  C  K  C  S  F  Q  L  Y  S  S  M  F  P  S  T  F  W  H  L  S  F  M  G  S  R  M  Y  L  L  S  R  F  *  *  A  N  I  M  Y  *  Q  C  F  A  P  *  *  N  T  L  L  K  S  I  S  F  P  A  *  R  N  I  G  G  *  V  I  L  A  S  Q  W  L  S  S  E  K  S  *  G  S  W  Q  L  *  Q  Q  A  K  P  S  L  I  *  *  R  F  I  M  R  K  I  I  S  W  L  R  M  G  S  I  D  L  S  G  I  P  V  T  V  V  S  S  S  G  L  L  V  H  K  *  C  Y  V  I  Q  Y  Q  P  L  H  S  Q  L  L  C  G  N  S  S  R  E  G  Y  L  T  R  S  F  S  S  S  S  S  L  V  L  T  T  K  I  I  *  E  K  F  L  L  V  F  H  L  *  G  D  Y  I  L  F  S  A  L  Y  I  H  A  *  R  H  L  L  I  G  A  E  I  T  L  F  M  N  F  I  F  L  D  T  L  Y  S  F  H  N  M  K  F  A  R  K  R  F  L  L  D  I  T  S  E  V  M  L  L  L  T  L  V  *  R  V  Y  L  I  C  I  I  M  F  S  S  Y  H  V  F  V  K  T  *  V  N  C  S  C  G  E  L  *  V  I  T  V  F  V  F  M  A  *  W  D  S  V  F  I  I  L  L  R  R  R  K  A   </second_frame>
            <third_frame>   S  L  N  *  N  N  Y  L  A  F  I  R  S  G  C   : W  L  S  R  L  C  L  C  A  S  R  L  I  Y  G  V  A  Y  R  L  A  H  R  Y  R :   F  G  V  E  I  *  N  I  A  Y  H  I  F  K  P  L  M  T  Q  T  E  T  S  F  *  *  L  *  R  E  V  L  F  D  L  F  A  *  N  G  R  A  F  W  I  Y  S  M  Q  T  I  I  A  N  V  H  F  N  Y  I  L  P  C  F  R  V  H  S  G  T  C  L  S  W  E  V  E  C  I  F  *  V  A  F  D  K  Q  T  L  C  T  S  N  V  L  L  L  D  R  I  P  Y  *  N  L  F  L  S  R  L  K  G  I  L  V  D  K  *  F  W  P  R  N  G  C  P  R  R  N  H  K  E  V  G  N  C  D  S  R  P  S  L  H  S  S  N  K  G  L  S  *  G  K  S  S  V  G  Y  E  W  D  L  *  I  C  P  A  S  R  L  L  W  F  L  H  L  V  C  W  Y  T  N  N  A  M  *  S  N  I  N  H  C  I  H  S  C  C  V  E  I  L  L  G  K  D  T  L  R  G  V  F  P  Q  A  V  L  W  F  *  L  R  R  L  Y  E  K  S  S  F  W  Y  S  T  C  E  V  I  I  S  S  S  V  L  Y  I  F  M  P  N  V  I  C  S  S  V  L  R  *  H  C  L  *  I  L  S  S  *  T  L  F  T  V  F  I  T  *  S  S  P  E  K  G  S  S  *  I  *  L  L  R  *  C  F  Y  *  P  L  Y  S  A  F  I  L  F  V  S  S  C  F  R  R  I  M  S  L  L  R  L  R  *  T  V  L  V  G  S  C  K  L  *  L  Y  L  Y  L  W  L  D  G  T  V  F  L  S  Y  S  *  G  E  E  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11211" stop="10555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLRPHFSNFNERFCLTYSREMAELFGYTACRQLLQMFISIIFFHVSEYILALVFHGKSNVSFKSLLISKHYVLAMFCSLIEYLIEIYFFPGLKEYWWISNFGLAMVVLGEIIRKLAIVTAGQAFTHLIKVYHEENHQLVTNGIYRFVRHPGYCGFFIWSVGTQIMLCNPISTIAFTVVVWKFFSGRIPYEEFFLKQFFGSDYEDYMRKVPSGIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11344" e_stop="11265"/>
            <exon e_start="11141" e_stop="10207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.548" acc_prob="0.731" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11344" e_stop="11265" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.548" acc_prob="0.731">
            <gDNA_intron_boundary i_start="11264" i_stop="11142" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="11141" e_stop="10207" e_length="935"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11344" stop="11265"/>
              <exon start="11141" stop="10685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10874" stop="10207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10804" stop="10215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAG : AGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</gDNA_template>
            <first_frame> V  I  L  K  G  *  F  H  *  F  *  S  P  F  C  G  A  N  C  T  E  L  I  N  I  F  R :   A  F  W  I  Y  S  M  Q  T  I  I  A  N  V  H  F  N  Y  I  L  P  C  F  R  V  H  S  G  T  C  L  S  W  E  V  E  C  I  F  *  V  A  F  D  K  Q  T  L  C  T  S  N  V  L  L  L  D  R  I  P  Y  *  N  L  F  L  S  R  L  K  G  I  L  V  D  K  *  F  W  P  R  N  G  C  P  R  R  N  H  K  E  V  G  N  C  D  S  R  P  S  L  H  S  S  N  K  G  L  S  *  G  K  S  S  V  G  Y  E  W  D  L  *  I  C  P  A  S  R  L  L  W  F  L  H  L  V  C  W  Y  T  N  N  A  M  *  S  N  I  N  H  C  I  H  S  C  C  V  E  I  L  L  G  K  D  T  L  R  G  V  F  P  Q  A  V  L  W  F  *  L  R  R  L  Y  E  K  S  S  F  W  Y  S  T  C  E  V  I  I  S  S  S  V  L  Y  I  F  M  P  N  V  I  C  S  S  V  L  R  *  H  C  L  *  I  L  S  S  *  T  L  F  T  V  F  I  T  *  S  S  P  E  K  G  S  S  *  I  *  L  L  R  *  C  F  Y  *  P  L  Y  S  A  F  I  L  F  V  S  S  C  F  R  R  I  M  S  L  L  R  L  R  *  T  V  L  V  G  S  C  K  L  *  L  Y  L  Y  L  W  L  D  G  T  V  F  L  S  Y  S  *  G  E  E  R  L  </first_frame>
            <second_frame>  S  F  L  K  D  S  F  I  D  S  E  A  H  F  V  V  L  I  V  Q  S  S  S  T  F  S   : E  L  F  G  Y  T  A  C  R  Q  L  L  Q  M  F  I  S  I  I  F  F  H  V  S  E  Y  I  L  A  L  V  F  H  G  K  S  N  V  S  F  K  S  L  L  I  S  K  H  Y  V  L  A  M  F  C  S  L  I  E  Y  L  I  E  I  Y  F  F  P  G  L  K  E  Y  W  W  I  S  N  F  G  L  A  M  V  V  L  G  E  I  I  R  K  L  A  I  V  T  A  G  Q  A  F  T  H  L  I  K  V  Y  H  E  E  N  H  Q  L  V  T  N  G  I  Y  R  F  V  R  H  P  G  Y  C  G  F  F  I  W  S  V  G  T  Q  I  M  L  C  N  P  I  S  T  I  A  F  T  V  V  V  W  K  F  F  S  G  R  I  P  Y  E  E  F  F  L  K  Q  F  F  G  S  D  Y  E  D  Y  M  R  K  V  P  S  G  I  P  L  V  R  *  L  Y  P  L  Q  C  S  I  Y  S  C  L  T  S  S  A  H  R  C  *  D  N  T  V  Y  E  F  Y  L  L  R  H  S  L  Q  F  S  *  H  E  V  R  Q  K  K  V  P  P  R  Y  N  F  *  G  D  A  S  I  N  P  C  I  A  R  L  S  Y  L  Y  H  H  V  F  V  V  S  C  L  C  *  D  L  G  K  L  F  L  W  G  A  V  S  Y  N  C  I  C  I  Y  G  L  M  G  Q  C  F  Y  H  T  L  K  E  K  K  G  F </second_frame>
            <third_frame>   H  S  *  R  I  V  S  L  I  L  K  P  I  L  W  C  *  L  Y  R  A  H  Q  H  F  Q  :  S  F  L  D  I  Q  H  A  D  N  Y  C  K  C  S  F  Q  L  Y  S  S  M  F  P  S  T  F  W  H  L  S  F  M  G  S  R  M  Y  L  L  S  R  F  *  *  A  N  I  M  Y  *  Q  C  F  A  P  *  *  N  T  L  L  K  S  I  S  F  P  A  *  R  N  I  G  G  *  V  I  L  A  S  Q  W  L  S  S  E  K  S  *  G  S  W  Q  L  *  Q  Q  A  K  P  S  L  I  *  *  R  F  I  M  R  K  I  I  S  W  L  R  M  G  S  I  D  L  S  G  I  P  V  T  V  V  S  S  S  G  L  L  V  H  K  *  C  Y  V  I  Q  Y  Q  P  L  H  S  Q  L  L  C  G  N  S  S  R  E  G  Y  L  T  R  S  F  S  S  S  S  S  L  V  L  T  T  K  I  I  *  E  K  F  L  L  V  F  H  L  *  G  D  Y  I  L  F  S  A  L  Y  I  H  A  *  R  H  L  L  I  G  A  E  I  T  L  F  M  N  F  I  F  L  D  T  L  Y  S  F  H  N  M  K  F  A  R  K  R  F  L  L  D  I  T  S  E  V  M  L  L  L  T  L  V  *  R  V  Y  L  I  C  I  I  M  F  S  S  Y  H  V  F  V  K  T  *  V  N  C  S  C  G  E  L  *  V  I  T  V  F  V  F  M  A  *  W  D  S  V  F  I  I  L  L  R  R  R  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11343" stop="11265"/>
                    <exon start="11141" stop="10555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLKDSFIDSEAHFVVLIVQSSSTFSELFGYTACRQLLQMFISIIFFHVSEYILALVFHGKSNVSFKSLLISKHYVLAMFCSLIEYLIEIYFFPGLKEYWWISNFGLAMVVLGEIIRKLAIVTAGQAFTHLIKVYHEENHQLVTNGIYRFVRHPGYCGFFIWSVGTQIMLCNPISTIAFTVVVWKFFSGRIPYEEFFLKQFFGSDYEDYMRKVPSGIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12334" e_stop="11540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="12334" e_stop="11540" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12334" stop="11540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</gDNA_template>
            <first_frame> F  Y  F  V  H  L  R  Y  V  F  V  F  E  *  T  E  F  V  V  F  C  F  C  F  C  S  S  F  V  D  L  G  L  S  R  L  C  L  C  A  S  R  L  I  Y  G  V  A  Y  R  L  A  H  R  Y  R  F  S  L  V  L  L  L  I  L  E  L  G  I  F  Q  F  F  F  Q  L  T  R  S  F  P  W  A  G  *  I  L  *  G  N  L  W  C  S  *  T  Y  G  I  S  I  N  L  D  I  L  G  R  Y  S  V  E  L  I  *  Y  Y  L  L  T  L  M  L  Q  K  K  K  L  K  W  C  T  *  C  *  K  K  V  R  C  F  N  G  A  A  M  L  *  K  F  Y  I  F  I  C  H  C  G  L  M  I  E  L  N  F  R  V  I  Y  *  M  I  L  M  I  S  V  L  *  M  L  I  S  R  I  T  F  L  L  S  C  F  Y  L  N  *  F  V  K  E  C  D  S  *  I  V  N  N  L  L  F  F  M  I  *  *  W  E  C  *  I  T  S  Y  Q  V  *  *  K  C  A  *  I  R  L  V  W  I  G  V  M  L  I  D  *  F  L  L  Y  *  R  V  Q  Y  L  K  A  L  Y  *  P  Q  N  P  I </first_frame>
            <second_frame>  F  I  L  C  I  F  G  M  F  S  Y  L  N  E  L  N  L  L  F  S  V  F  V  S  V  L  L  L  W  I  *  G  *  A  A  F  A  C  V  H  L  D  *  F  M  G  *  L  I  V  *  L  T  G  T  G  S  V  *  C  C  C  *  Y  S  N  W  G  F  F  S  F  F  F  N  S  L  G  H  S  L  G  R  G  E  F  Y  R  A  I  Y  G  V  R  E  P  M  V  Y  L  S  T  *  I  F  W  V  D  T  P  L  N  *  S  N  I  I  C  *  H  *  C  Y  K  K  R  S  L  N  G  A  L  D  A  K  K  K  F  V  V  L  M  V  Q  R  C  Y  K  N  S  I  S  S  S  A  I  V  D  S  *  *  N  S  I  F  E  S  F  T  K  *  Y  *  *  Y  L  C  C  R  C  *  F  L  G  *  L  F  Y  *  V  A  F  I  S  I  S  S  L  K  N  V  I  V  K  *  L  I  T  C  Y  F  S  *  F  S  D  G  S  V  K  S  Q  V  I  K  C  S  E  N  V  P  E  S  G  *  F  G  *  V  L  C  *  L  I  D  F  Y  F  I  R  E  S  N  I  *  K  L  C  I  D  P  K  I  P   </second_frame>
            <third_frame>   L  F  C  A  S  S  V  C  F  R  I  *  M  N  *  I  C  C  F  L  F  L  F  L  F  F  F  C  G  F  R  V  E  P  P  L  L  V  C  I  S  I  N  L  W  G  S  L  S  S  S  S  Q  V  Q  V  Q  F  S  V  A  A  D  T  R  T  G  D  F  S  V  F  F  S  T  H  *  V  I  P  L  G  G  V  N  F  I  G  Q  F  M  V  F  V  N  L  W  Y  I  Y  Q  L  R  Y  F  G  *  I  L  R  *  I  N  L  I  L  S  V  D  I  D  A  T  K  K  E  A  *  M  V  H  L  M  L  K  K  S  S  L  F  *  W  C  S  D  V  I  K  I  L  Y  L  H  L  P  L  W  T  H  D  R  T  Q  F  S  S  H  L  L  N  D  T  D  D  I  C  A  V  D  V  D  F  *  D  N  F  F  I  K  L  L  L  S  Q  L  V  R  *  R  M  *  *  L  N  S  *  *  L  V  I  F  H  D  L  V  M  G  V  L  N  H  K  L  S  S  V  V  K  M  C  L  N  P  V  S  L  D  R  C  Y  V  D  *  L  I  F  T  L  L  E  S  P  I  S  K  S  S  V  L  T  P  K  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12292" stop="12080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEFVVFCFCFCSSFVDLGLSRLCLCASRLIYGVAYRLAHRYRFSLVLLLILELGIFQFFFQLTRSFPWAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="17235" PGL_stop="19173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17235" e_stop="17275"/>
            <exon e_start="18442" e_stop="19173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.808" acc_prob="0.989" e_score="0.878"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="17235" e_stop="17275" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.808" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17276" i_stop="18441" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="18442" e_stop="19173" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17235" stop="17275"/>
              <exon start="18442" stop="19173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCAGTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA : AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</gDNA_template>
            <first_frame> N  Q  W  I  S  G  F  I  L  F  Y  L  Q  * :   V  T  G  Y  R  G  D  N  L  F  Y  E  E  V  Q  V  L  I  F  F  P  Y  K  P  C  F  L  E  S  V  E  L  S  K  S  L  S  Y  S  T  P  N  F  S  *  S  L  K  F  I  G  L  F  F  H  L  Q  I  E  T  D  I  Q  S  P  L  Y  S  I  K  Y  M  T  V  L  P  K  C  R  Y  K  *  S  N  E  S  V  F  V  Y  F  F  F  E  L  *  F  H  S  L  L  S  F  S  E  S  *  S  F  K  V  S  C  F  C  S  L  *  N  I  P  T  I  A  F  T  S  Y  F  T  S  L  M  F  P  *  S  V  F  L  I  T  T  S  *  R  K  A  R  N  I  T  I  F  F  *  V  *  S  S  R  Y  T  K  L  Q  *  *  S  F  *  G  D  Q  H  Y  K  E  V  L  G  R  V  T  C  C  S  *  A  G  E  G  V  F  R  G  K  *  *  *  K  R  G  S  S  E  *  L  *  G  F  S  R  E  K  *  Y  S  G  R  T  T  I  F  L  I  I  S  T  *  C  W  P  *  E  I  C  K  K  S  A  N  F   </first_frame>
            <second_frame>  I  S  G  S  L  V  L  F  C  F  T  F  N   : K  *  Q  D  T  E  G  I  I  F  S  M  R  K  C  K  S  *  F  F  F  H  I  S  L  A  S  *  N  L  L  N  Y  R  K  V  *  A  I  R  H  Q  I  S  L  S  L  *  S  L  S  A  Y  S  F  I  S  R  *  K  P  I  F  N  H  H  C  I  P  L  S  I  *  Q  C  Y  Q  S  V  D  T  S  K  A  M  S  Q  F  S  F  T  S  S  S  S  S  N  F  T  L  F  Y  H  S  Q  N  H  N  P  S  K  F  H  V  S  A  P  F  R  T  S  Q  P  S  P  S  H  P  I  L  P  P  L  C  S  R  D  P  S  S  S  S  P  L  L  E  E  K  P  E  T  S  Q  S  S  S  K  F  D  P  Q  D  T  L  S  Y  N  D  E  V  S  E  E  I  S  T  T  K  K  S  L  E  E  L  L  V  V  R  R  P  V  K  E  S  S  V  E  N  D  D  E  K  G  E  A  V  S  N  F  E  D  S  Q  E  R  N  D  I  L  E  E  Q  P  S  S  S  S  F  P  L  D  A  G  L  K  K  F  A  K  K  V  P  I  F  </second_frame>
            <third_frame>   S  V  D  L  W  F  Y  F  V  L  P  S  I  :  S  N  R  I  Q  R  G  *  S  F  L  *  G  S  A  S  L  D  F  F  S  I  *  A  L  L  L  R  I  C  *  T  I  E  K  F  E  L  F  D  T  K  F  L  L  V  F  E  V  Y  R  L  I  L  S  S  P  D  R  N  R  Y  S  I  T  I  V  F  H  *  V  Y  D  S  V  T  K  V  *  I  Q  V  K  Q  *  V  S  F  R  L  L  L  L  R  A  L  I  S  L  S  S  I  I  L  R  I  I  I  L  Q  S  F  M  F  L  L  P  L  E  H  P  N  H  R  L  H  I  L  F  Y  L  P  Y  V  P  V  I  R  L  P  H  H  H  F  L  K  K  S  Q  K  H  H  N  L  L  L  S  L  I  L  K  I  H  *  V  T  M  M  K  F  L  R  R  S  A  L  Q  R  S  P  W  K  S  Y  L  L  F  V  G  R  *  R  S  L  P  W  K  M  M  M  K  K  G  K  Q  *  V  T  L  R  I  L  K  R  E  M  I  F  W  K  N  N  H  L  P  H  H  F  H  L  M  L  A  L  R  N  L  Q  K  K  C  Q  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18660" stop="19172"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QCYQSVDTSKAMSQFSFTSSSSSNFTLFYHSQNHNPSKFHVSAPFRTSQPSPSHPILPPLCSRDPSSSSPLLEEKPETSQSSSKFDPQDTLSYNDEVSEEISTTKKSLEELLVVRRPVKESSVENDDEKGEAVSNFEDSQERNDILEEQPSSSSFPLDAGLKKFAKKVPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="20429" PGL_stop="22813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20429" e_stop="20444"/>
            <exon e_start="20549" e_stop="20608"/>
            <exon e_start="21048" e_stop="21293"/>
            <exon e_start="21527" e_stop="21637"/>
            <exon e_start="21836" e_stop="22012"/>
            <exon e_start="22121" e_stop="22813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="0.983"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20429" e_stop="20444" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20445" i_stop="20548" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="20549" e_stop="20608" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="20609" i_stop="21047" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="21048" e_stop="21293" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21294" i_stop="21526" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21527" e_stop="21637" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21638" i_stop="21835" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21836" e_stop="22012" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="22013" i_stop="22120" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="22121" e_stop="22813" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20429" stop="20444"/>
              <exon start="20549" stop="20608"/>
              <exon start="21048" stop="21293"/>
              <exon start="21527" stop="21637"/>
              <exon start="21836" stop="21944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21084" stop="21293"/>
              <exon start="21527" stop="21637"/>
              <exon start="21836" stop="22012"/>
              <exon start="22121" stop="22321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22127" stop="22649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22530" stop="22813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277215" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGCTAGTTGGCTG : GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAG : AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT : GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG : GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG : CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTATGAGTAAACATTGTATA</gDNA_template>
            <first_frame> L  C  *  L  A   : G  M  G  S  T  R  G  S  V  R  E  *  P  F  R  *  A  A  V  *   : E  S  S  S  S  Q  S  E  K  *  V  R  V  A  C  M  G  S  F  *  S  *  S  R  K  Y  *  S  R  K  E  T  S  N  N  R  A  H  G  E  S  *  R  S  C  S  S  P  I  T  W  F  D  R  I  Q  E  L  Q  C  K  P  C  T  S  S  I  P  K  S  V  S  T  R  S  K  A  S  T  S  L  D   : C  L  G  L  D  G  V  E  R  R  K  H  F  H  S  S  R  T  I  P  E  G  S  I  D  Q  L  N  N  *  K  C  C  A  L  S  S   : G  L  G  C  F  G  A  K  S  W  K  S  I  S  C  S  K  T  I  *  I  V  S  E  H  K  L  S  E  L  Y  N  M  D  D  M  G  K  F  R  G  R  S  R  *  L  Y  P  C  R  G  N  S  *  P  L  L  S  T   : A  Y  *  S  C  *  *  *  V  V  D  Y  G  L  L  R  R  H  *  P  S  D  *  Q  H  K  E  A  L  E  S  R  S  E  L  L  L  Q  G  K  R  V  C  F  *  Y  Y  C  W  R  R  R  *  G  E  H  R  R  I  S  F  S  L  L  G  *  R  Q  *  Q  *  H  R  Y  R  K  W  L  *  F  R  *  F  Y  Q  C  N  A  V  F  R  P  F  K  A  G  S  S  A  Y  N  I  S  *  G  P  S  E  N  R  Q  N  Y  *  W  G  V  A  T  I  D  K  D  *  *  N  I  N  N  T  L  I  L  Q  Q  Q  R  H  T  *  C  N  L  T  S  V  V  W  E  G  G  G  R  K  V  M  C  C  S  L  T  F  T  S  *  R  *  R  D  C  F  *  L  S  S  I  *  S  L  L  F  F  S  G  N  C  N  I  H  *  C  C  Q  M  K  K  S  W  S  T  F  C  K  L  L  R  N  I  E  K  N  C  I  N  L  I  V  K  E  I  Q  I  Y  T  Y  Y  E  *  T  L  Y  </first_frame>
            <second_frame>  C  A  S  W  L  :  A  W  A  Q  L  E  A  Q  L  E  N  N  R  S  A  R  Q  L  F  E  :  K  A  V  Q  A  S  P  K  N  R  F  A  W  H  V  W  G  V  F  E  A  N  L  G  N  I  D  Q  G  R  K  L  L  T  I  G  H  M  V  N  P  R  D  P  V  L  L  Q  S  L  G  L  I  E  Y  K  N  S  S  A  N  L  A  R  V  L  F  R  R  A  S  Q  L  D  P  R  H  Q  P  V  W  I  :  A  W  G  W  M  E  W  K  E  G  N  I  S  T  A  R  E  L  Y  Q  K  A  L  S  I  N  S  T  T  E  S  A  A  R  C  L  Q  :  A  W  G  V  L  E  Q  R  A  G  N  L  S  A  A  R  R  L  F  R  S  S  L  N  I  N  S  Q  S  Y  I  T  W  M  T  W  A  N  L  E  E  D  Q  G  N  S  I  R  A  E  E  I  R  N  L  Y  F  Q  Q  :  R  T  E  V  V  D  D  E  S  W  I  M  G  F  L  D  V  I  D  P  A  I  D  S  I  K  R  L  L  N  L  D  Q  N  S  Y  Y  K  V  K  E  S  A  S  N  T  T  A  G  D  D  V  E  G  S  T  E  E  S  A  S  P  S  S  A  N  V  N  D  N  N  I  D  T  G  S  G  F  D  L  D  D  F  I  S  V  M  L  S  L  D  P  S  K  L  E  V  Q  L  T  T  S  L  K  D  P  P  K  I  A  R  T  T  N  G  V  W  R  P  S  T  K  T  S  R  T  S  T  T  L  *  F  Y  N  N  N  D  I  L  N  V  T  S  L  V  W  S  G  R  A  E  D  E  R  *  C  V  A  A  L  P  L  P  R  E  G  R  E  T  V  S  D  S  A  Q  Y  E  V  Y  C  S  L  V  G  I  A  T  F  I  N  V  V  K  *  R  S  L  G  P  H  F  V  N  Y  L  G  I  L  R  R  I  V  *  I  *  L  *  K  R  Y  K  S  T  H  I  M  S  K  H  C  I </second_frame>
            <third_frame>   V  L  V  G  W :   H  G  L  N  *  R  L  S  *  R  I  T  V  P  L  G  S  C  L  R :   K  Q  F  K  P  V  R  K  I  G  S  R  G  M  Y  G  E  F  L  K  L  I  *  E  I  L  I  K  E  G  N  F  *  Q  *  G  T  W  *  I  L  E  I  L  F  F  S  N  H  L  V  *  *  N  T  R  T  P  V  Q  T  L  H  E  F  Y  S  E  E  R  L  N  *  I  Q  G  I  N  Q  F  G  L :   L  G  V  G  W  S  G  K  K  E  T  F  P  Q  L  E  N  Y  T  R  R  L  Y  R  S  T  Q  Q  L  K  V  L  R  V  V  F  R :   L  G  V  F  W  S  K  E  L  E  I  Y  Q  L  L  E  D  Y  L  D  R  L  *  T  *  T  L  R  A  I  *  H  G  *  H  G  Q  I  *  R  K  I  K  V  T  L  S  V  Q  R  K  F  V  T  S  T  F  N  S :   V  L  K  L  L  M  M  S  R  G  L  W  A  S  *  T  S  L  T  Q  R  L  T  A  *  R  G  S  *  I  *  I  R  T  L  T  T  R  *  K  S  L  L  L  I  L  L  L  E  T  T  L  R  G  A  Q  K  N  Q  L  L  P  P  R  L  T  S  M  T  I  T  *  I  Q  E  V  A  L  I  *  M  I  L  S  V  *  C  C  L  *  T  L  Q  S  W  K  F  S  L  Q  H  L  L  R  T  L  R  K  S  P  E  L  L  M  G  C  G  D  H  R  Q  R  L  V  E  H  Q  Q  H  F  D  F  T  T  T  T  T  Y  L  M  *  P  H  *  C  G  L  G  G  R  R  T  K  G  D  V  L  Q  P  Y  L  Y  L  V  K  V  E  R  L  F  L  T  Q  L  N  M  K  F  I  V  L  *  W  E  L  Q  H  S  L  M  L  S  N  E  E  V  L  V  H  I  L  *  I  T  *  E  Y  *  E  E  L  Y  K  F  D  C  E  R  D  T  N  L  H  I  L  *  V  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20430" stop="20444"/>
                    <exon start="20549" stop="20608"/>
                    <exon start="21048" stop="21293"/>
                    <exon start="21527" stop="21637"/>
                    <exon start="21836" stop="22012"/>
                    <exon start="22121" stop="22513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CASWLAWAQLEAQLENNRSARQLFEKAVQASPKNRFAWHVWGVFEANLGNIDQGRKLLTIGHMVNPRDPVLLQSLGLIEYKNSSANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSIRAEEIRNLYFQQRTEVVDDESWIMGFLDVIDPAIDSIKRLLNLDQNSYYKVKESASNTTAGDDVEGSTEESASPSSANVNDNNIDTGSGFDLDDFISVMLSLDPSKLEVQLTTSLKDPPKIARTTNGVWRPSTKTSRTSTTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25553" PGL_stop="29320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28731"/>
            <exon e_start="28889" e_stop="28900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28060" e_stop="28731" e_length="672"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157"/>
          </intron>
          <exon e_serial="6" e_score="0.750">
            <gDNA_exon_boundary e_start="28889" e_stop="28900" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25556" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25567" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25573" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25587" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25604" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25612" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25614" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25621" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25631" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25645" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25649" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25651" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277830" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25674" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25689" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25700" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="25942"/>
              <exon start="26841" stop="27070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25860" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26844" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26868" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26879" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26885" stop="27142"/>
              <exon start="27726" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26902" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26920" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26945" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26964" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26969" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27142"/>
              <exon start="27726" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26997" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27035" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27066" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27075" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27085" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27090" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27970"/>
              <exon start="28060" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27762" stop="27970"/>
              <exon start="28060" stop="28406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27764" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27769" stop="27970"/>
              <exon start="28060" stop="28273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27774" stop="27970"/>
              <exon start="28060" stop="28653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="27970"/>
              <exon start="28060" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27789" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27794" stop="27970"/>
              <exon start="28060" stop="28429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27808" stop="27970"/>
              <exon start="28060" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27970"/>
              <exon start="28060" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27907" stop="27970"/>
              <exon start="28060" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27913" stop="27970"/>
              <exon start="28060" stop="28725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27924" stop="27970"/>
              <exon start="28060" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27970"/>
              <exon start="28060" stop="28620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27965" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28271" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28278" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28329" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28423" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28425" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : TACAAAAAGAAA</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  H :   T  K  R   </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : I  Q  K  E  </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  Y  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28060" e_stop="28739" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25556" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25567" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25573" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25587" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25604" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25612" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25614" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25621" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25631" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25645" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25649" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25651" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277830" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25674" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25689" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25700" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="25942"/>
              <exon start="26841" stop="27070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25860" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26844" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26868" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26879" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26885" stop="27142"/>
              <exon start="27726" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26902" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26920" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26945" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26964" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26969" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27142"/>
              <exon start="27726" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26997" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27035" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27066" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27075" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27085" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27090" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27970"/>
              <exon start="28060" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27762" stop="27970"/>
              <exon start="28060" stop="28406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27764" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27769" stop="27970"/>
              <exon start="28060" stop="28273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27774" stop="27970"/>
              <exon start="28060" stop="28653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="27970"/>
              <exon start="28060" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27789" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27794" stop="27970"/>
              <exon start="28060" stop="28429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27808" stop="27970"/>
              <exon start="28060" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27970"/>
              <exon start="28060" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27903" stop="27970"/>
              <exon start="28060" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27907" stop="27970"/>
              <exon start="28060" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27913" stop="27970"/>
              <exon start="28060" stop="28725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27924" stop="27970"/>
              <exon start="28060" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27970"/>
              <exon start="28060" stop="28620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27965" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28078" stop="28736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTT</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q  S  A  </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y  S  P  L </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28731"/>
            <exon e_start="28892" e_stop="28903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28060" e_stop="28731" e_length="672"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28891" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="28892" e_stop="28903" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25555" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28731"/>
              <exon start="28892" stop="28901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25556" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25567" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25573" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25587" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25604" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25612" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25614" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25621" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25631" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25645" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25649" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25651" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277830" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25674" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25689" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25700" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="25942"/>
              <exon start="26841" stop="27070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25860" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26844" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26868" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26879" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26885" stop="27142"/>
              <exon start="27726" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26902" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26920" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26945" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26964" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26969" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27142"/>
              <exon start="27726" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26997" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27035" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27066" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27075" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27085" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27090" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27970"/>
              <exon start="28060" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27762" stop="27970"/>
              <exon start="28060" stop="28406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27764" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27769" stop="27970"/>
              <exon start="28060" stop="28273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27774" stop="27970"/>
              <exon start="28060" stop="28653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="27970"/>
              <exon start="28060" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27789" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27794" stop="27970"/>
              <exon start="28060" stop="28429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27808" stop="27970"/>
              <exon start="28060" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27970"/>
              <exon start="28060" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27848" stop="27970"/>
              <exon start="28060" stop="28731"/>
              <exon start="28892" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27907" stop="27970"/>
              <exon start="28060" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27913" stop="27970"/>
              <exon start="28060" stop="28725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27924" stop="27970"/>
              <exon start="28060" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27970"/>
              <exon start="28060" stop="28620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27965" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28079" stop="28731"/>
              <exon start="28892" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28079" stop="28731"/>
              <exon start="28892" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : AAAAAGAAAGTA</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q :   K  R  K   </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : K  K  E  S  </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  K  K  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28731"/>
            <exon e_start="28885" e_stop="28938"/>
            <exon e_start="29269" e_stop="29320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.557" e_score="0.481"/>
          <exon-only e_score="0.462"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28060" e_stop="28731" e_length="672"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28884" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="0.481">
            <gDNA_exon_boundary e_start="28885" e_stop="28938" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.557">
            <gDNA_intron_boundary i_start="28939" i_stop="29268" i_length="330"/>
          </intron>
          <exon e_serial="7" e_score="0.462">
            <gDNA_exon_boundary e_start="29269" e_stop="29320" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25556" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25567" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25573" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25587" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25604" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25612" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25614" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25621" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25631" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25645" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25649" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25651" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277830" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25674" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25689" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25700" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="25942"/>
              <exon start="26841" stop="27070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25860" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26844" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26868" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26879" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26885" stop="27142"/>
              <exon start="27726" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26902" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26920" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26945" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26964" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26969" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27142"/>
              <exon start="27726" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26997" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27035" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27066" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27075" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27085" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27090" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27970"/>
              <exon start="28060" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27762" stop="27970"/>
              <exon start="28060" stop="28406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27764" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27769" stop="27970"/>
              <exon start="28060" stop="28273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27774" stop="27970"/>
              <exon start="28060" stop="28653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="27970"/>
              <exon start="28060" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27789" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27794" stop="27970"/>
              <exon start="28060" stop="28429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27808" stop="27970"/>
              <exon start="28060" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27970"/>
              <exon start="28060" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27907" stop="27970"/>
              <exon start="28060" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27913" stop="27970"/>
              <exon start="28060" stop="28725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27924" stop="27970"/>
              <exon start="28060" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27970"/>
              <exon start="28060" stop="28620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27965" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28237" stop="28731"/>
              <exon start="28885" stop="28938"/>
              <exon start="29269" stop="29320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : GGACTACAAAAAGAAAGTAGGACAAGTAAATTGAAACGGAGGGGAGTACAAGAT : CTCCAGAATATGCAGAACAAGCAACCCCGACTCGAAGAACAGAAACAAGAAA</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q :   D  Y  K  K  K  V  G  Q  V  N  *  N  G  G  E  Y  K  I :   S  R  I  C  R  T  S  N  P  D  S  K  N  R  N  K  K </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : R  T  T  K  R  K  *  D  K  *  I  E  T  E  G  S  T  R   : S  P  E  Y  A  E  Q  A  T  P  T  R  R  T  E  T  R   </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  G  L  Q  K  E  S  R  T  S  K  L  K  R  R  G  V  Q  D  :  L  Q  N  M  Q  N  K  Q  P  R  L  E  E  Q  K  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28576" stop="28731"/>
                    <exon start="28885" stop="28938"/>
                    <exon start="29269" stop="29319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKAVLLNSGLIYIFLTLLVDSYSFLKIVMRTITIFHLVKSQFNKSPLSCLYTGLQKESRTSKLKRRGVQDLQNMQNKQPRLEEQKQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="25553" e_stop="25712"/>
            <exon e_start="25829" e_stop="25942"/>
            <exon e_start="26841" e_stop="27142"/>
            <exon e_start="27726" e_stop="27970"/>
            <exon e_start="28060" e_stop="28731"/>
            <exon e_start="28890" e_stop="28903"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25553" e_stop="25712" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25713" i_stop="25828" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25829" e_stop="25942" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25943" i_stop="26840" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26841" e_stop="27142" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27143" i_stop="27725" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27726" e_stop="27970" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27971" i_stop="28059" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28060" e_stop="28731" e_length="672"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28889" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="28890" e_stop="28903" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25553" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25554" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25556" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25557" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25560" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25567" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25573" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25587" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25602" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281416" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25604" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25607" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25608" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25612" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25614" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25615" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25618" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25620" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25621" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25631" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25642" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25645" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25648" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25649" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279154" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25651" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25652" stop="25712"/>
              <exon start="25829" stop="25942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25654" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25655" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25658" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25659" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25661" stop="25712"/>
              <exon start="25829" stop="25936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25662" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25663" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25664" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25665" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25666" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25667" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25669" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25671" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25672" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277830" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25673" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25674" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25676" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25677" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25678" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25679" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25680" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25681" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25684" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25685" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25689" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25696" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25697" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25700" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25702" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25712"/>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="26906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25829" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="25942"/>
              <exon start="26841" stop="27070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25860" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25888" stop="25942"/>
              <exon start="26841" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26844" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26850" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26853" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26863" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26864" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26868" stop="27142"/>
              <exon start="27726" stop="27859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26879" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26884" stop="27142"/>
              <exon start="27726" stop="27913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26885" stop="27142"/>
              <exon start="27726" stop="27858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26890" stop="27142"/>
              <exon start="27726" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26902" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26904" stop="27142"/>
              <exon start="27726" stop="27914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26920" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26927" stop="27142"/>
              <exon start="27726" stop="27902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26945" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26954" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26955" stop="27142"/>
              <exon start="27726" stop="27941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26964" stop="27142"/>
              <exon start="27726" stop="27943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26969" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26991" stop="27142"/>
              <exon start="27726" stop="27950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26997" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27001" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27027" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27035" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27042" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27066" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27075" stop="27142"/>
              <exon start="27726" stop="27958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27085" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27090" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27113" stop="27142"/>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27726" stop="27970"/>
              <exon start="28060" stop="28678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27732" stop="27970"/>
              <exon start="28060" stop="28371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27737" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27758" stop="27970"/>
              <exon start="28060" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27762" stop="27970"/>
              <exon start="28060" stop="28406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27764" stop="27970"/>
              <exon start="28060" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27769" stop="27970"/>
              <exon start="28060" stop="28273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27774" stop="27970"/>
              <exon start="28060" stop="28653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27787" stop="27970"/>
              <exon start="28060" stop="28702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27789" stop="27970"/>
              <exon start="28060" stop="28337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27794" stop="27970"/>
              <exon start="28060" stop="28429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27808" stop="27970"/>
              <exon start="28060" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27847" stop="27970"/>
              <exon start="28060" stop="28697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27868" stop="27970"/>
              <exon start="28060" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27903" stop="27970"/>
              <exon start="28060" stop="28731"/>
              <exon start="28890" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27907" stop="27970"/>
              <exon start="28060" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27913" stop="27970"/>
              <exon start="28060" stop="28725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27917" stop="27970"/>
              <exon start="28060" stop="28375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27924" stop="27970"/>
              <exon start="28060" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27957" stop="27970"/>
              <exon start="28060" stop="28620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27965" stop="27970"/>
              <exon start="28060" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : ACAAAAAGAAAGTA</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q :   Q  K  E  S  </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : N  K  K  K  V </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  T  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25671" stop="25712"/>
                    <exon start="25829" stop="25942"/>
                    <exon start="26841" stop="27142"/>
                    <exon start="27726" stop="27970"/>
                    <exon start="28060" stop="28562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="28059" e_stop="28731"/>
            <exon e_start="28889" e_stop="28900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28059" e_stop="28731" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28732" i_stop="28888" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="28889" e_stop="28900" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28059" stop="28537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28082" stop="28499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28150" stop="28708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28157" stop="28726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28179" stop="28627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28202" stop="28632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28271" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28278" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28282" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28288" stop="28699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28298" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28304" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28328" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28329" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28335" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28336" stop="28731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28354" stop="28681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28360" stop="28597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28423" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28425" stop="28731"/>
              <exon start="28889" stop="28900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACA : TACAAAAAGAAA</gDNA_template>
            <first_frame> G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y   : I  Q  K  E  </first_frame>
            <second_frame>  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  :  Y  K  K  K </second_frame>
            <third_frame>   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  H :   T  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28059" stop="28562"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30483" PGL_stop="28141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29859" e_stop="29843"/>
            <exon e_start="28731" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="29859" e_stop="29843" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29842" i_stop="28732" i_length="1111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28731" e_stop="28141" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29859" stop="29843"/>
              <exon start="28731" stop="28284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29858" stop="29843"/>
              <exon start="28731" stop="28324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29858" stop="29843"/>
              <exon start="28731" stop="28433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230176" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29855" stop="29843"/>
              <exon start="28731" stop="28577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29853" stop="29843"/>
              <exon start="28731" stop="28324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226809" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29853" stop="29843"/>
              <exon start="28731" stop="28332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226672" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTGATTTTGGTTTG : TGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> L  V  I  L  V  C :   V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </first_frame>
            <second_frame>  W  *  F  W  F   : V  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </second_frame>
            <third_frame>   G  D  F  G  L  :  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30483" e_stop="30463"/>
            <exon e_start="28746" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="30483" e_stop="30463" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30462" i_stop="28747" i_length="1716"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28746" e_stop="28141" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30483" stop="30463"/>
              <exon start="28746" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548566" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30483" stop="30463"/>
              <exon start="28746" stop="28530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295029" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28733" stop="28423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28732" stop="28225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCATCTCTGTTGTCTTTG : TATACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> L  S  S  L  L  S  L  :  Y  T  E  A  D  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </first_frame>
            <second_frame>  C  H  L  C  C  L  C :   I  Q  K  R  T  V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </second_frame>
            <third_frame>   V  I  S  V  V  F   : V  Y  R  S  G  L  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28913" e_stop="28892"/>
            <exon e_start="28744" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="28913" e_stop="28892" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28891" i_stop="28745" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28744" e_stop="28141" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28913" stop="28892"/>
              <exon start="28744" stop="28529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541538" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28733" stop="28423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28732" stop="28225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTTGTCCTACTTTCTTTTT : TACAGAAGCGGACTGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> L  L  V  L  L  S  F   : L  Q  K  R  T  V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </first_frame>
            <second_frame>  Y  L  S  Y  F  L  F  :  Y  R  S  G  L  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </second_frame>
            <third_frame>   T  C  P  T  F  F  F :   T  E  A  D  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28920" e_stop="28892"/>
            <exon e_start="28731" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.889"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="28920" e_stop="28892" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28891" i_stop="28732" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="28731" e_stop="28141" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28920" stop="28892"/>
              <exon start="28731" stop="28155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372443" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28900" stop="28892"/>
              <exon start="28731" stop="28209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28900" stop="28892"/>
              <exon start="28731" stop="28319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATTTACTTGTCCTACTTTCTTTTT : TGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> F  Q  F  T  C  P  T  F  F  F :   V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </first_frame>
            <second_frame>  F  N  L  L  V  L  L  S  F   : L  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </second_frame>
            <third_frame>   S  I  Y  L  S  Y  F  L  F  :  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="28909" e_stop="28892"/>
            <exon e_start="28722" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="28909" e_stop="28892" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28891" i_stop="28723" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28722" e_stop="28141" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28909" stop="28892"/>
              <exon start="28722" stop="28398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCCTACTTTCTTTTT : ACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> L  S  Y  F  L  F  :  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </first_frame>
            <second_frame>  C  P  T  F  F  L :   Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </second_frame>
            <third_frame>   V  L  L  S  F   : Y  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="28920" e_stop="28885"/>
            <exon e_start="28731" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.556"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="28920" e_stop="28885" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28884" i_stop="28732" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28731" e_stop="28141" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28920" stop="28885"/>
              <exon start="28731" stop="28471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATTTACTTGTCCTACTTTCTTTTTGTAGTCC : TGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> F  Q  F  T  C  P  T  F  F  L  *  S  :  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </first_frame>
            <second_frame>  F  N  L  L  V  L  L  S  F  C  S  P :   V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </second_frame>
            <third_frame>   S  I  Y  L  S  Y  F  L  F  V  V   : L  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="29323" e_stop="29300"/>
            <exon e_start="28731" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="29323" e_stop="29300" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29299" i_stop="28732" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="28731" e_stop="28141" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29323" stop="29300"/>
              <exon start="28731" stop="28147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28722" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28712" stop="28516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTTTCTTGTTTCTGTTCTTCGA : TGTATAAAGACAAGAAAGGGGACTTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> E  F  L  V  S  V  L  R  :  C  I  K  T  R  K  G  T  F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </first_frame>
            <second_frame>  S  F  L  F  L  F  F  D :   V  *  R  Q  E  R  G  L  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </second_frame>
            <third_frame>   V  S  C  F  C  S  S   : M  Y  K  D  K  K  G  D  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="29852" e_stop="29843"/>
            <exon e_start="28708" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.911" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="29852" e_stop="29843" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.911" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29842" i_stop="28709" i_length="1134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28708" e_stop="28141" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29852" stop="29843"/>
              <exon start="28708" stop="28226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28708" stop="28206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGGTTTG : TTTTATTGAATTGAGATTTCACAAGGTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> F  W  F   : V  L  L  N  *  D  F  T  R  W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </first_frame>
            <second_frame>  F  G  L  :  F  Y  *  I  E  I  S  Q  G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </second_frame>
            <third_frame>   L  V  C :   F  I  E  L  R  F  H  K  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="28816" e_stop="28796"/>
            <exon e_start="28683" e_stop="28141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="0.000" e_score="0.476"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.476">
            <gDNA_exon_boundary e_start="28816" e_stop="28796" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28795" i_stop="28684" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28683" e_stop="28141" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28816" stop="28796"/>
              <exon start="28683" stop="28348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28672" stop="28141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGATTGAAGAACATTTTG : GTGGAAAATTGTTATAGTTCTCATTACAATTTTCAAAAAGGAATAAGAATCTACAAGCAAGGTTAAAAAAATATAAATTAAGCCACTATTTAGTAGTACTGCTTTATTTTATTTTCATGTTTCATTTCCACTGGTTTGCAACAATGTCAGCAAGATCAACAACCCTCTGTGAGTAACCCCATTCATTGTCATACCAAGCAATAACCTTAACCATGTCATCTCCCATGACCATGGTGAGTGAAGAATCAACAGTTGATGACACGTCACTGCACCGGAAGTCAACTGACACGAGTGGTTCATCACAGACAGATAGAATGCCATTGAGTTCCTTATCAGCGGCCTCTCTGAATGCAGCATTCACTTCCTCAGCAAATGTCTTCTTGGTGACTTGCACAACAAGGTCCACAACCGAGACGTTAGGGGTGGGAACACGGAGGGCAATGCCGTTGAGTTTCCCCTTGAGGCTTGGGAGAACAAGAGCCACAGCCTTAGCAGCACCAGTTGAGGTTGGAACTATGTTCAGTGCTGCAGCTCGTGCACGTC</gDNA_template>
            <first_frame> T  R  L  K  N  I  L  :  V  E  N  C  Y  S  S  H  Y  N  F  Q  K  G  I  R  I  Y  K  Q  G  *  K  N  I  N  *  A  T  I  *  *  Y  C  F  I  L  F  S  C  F  I  S  T  G  L  Q  Q  C  Q  Q  D  Q  Q  P  S  V  S  N  P  I  H  C  H  T  K  Q  *  P  *  P  C  H  L  P  *  P  W  *  V  K  N  Q  Q  L  M  T  R  H  C  T  G  S  Q  L  T  R  V  V  H  H  R  Q  I  E  C  H  *  V  P  Y  Q  R  P  L  *  M  Q  H  S  L  P  Q  Q  M  S  S  W  *  L  A  Q  Q  G  P  Q  P  R  R  *  G  W  E  H  G  G  Q  C  R  *  V  S  P  *  G  L  G  E  Q  E  P  Q  P  *  Q  H  Q  L  R  L  E  L  C  S  V  L  Q  L  V  H  V </first_frame>
            <second_frame>  R  D  *  R  T  F  W :   W  K  I  V  I  V  L  I  T  I  F  K  K  E  *  E  S  T  S  K  V  K  K  I  *  I  K  P  L  F  S  S  T  A  L  F  Y  F  H  V  S  F  P  L  V  C  N  N  V  S  K  I  N  N  P  L  *  V  T  P  F  I  V  I  P  S  N  N  L  N  H  V  I  S  H  D  H  G  E  *  R  I  N  S  *  *  H  V  T  A  P  E  V  N  *  H  E  W  F  I  T  D  R  *  N  A  I  E  F  L  I  S  G  L  S  E  C  S  I  H  F  L  S  K  C  L  L  G  D  L  H  N  K  V  H  N  R  D  V  R  G  G  N  T  E  G  N  A  V  E  F  P  L  E  A  W  E  N  K  S  H  S  L  S  S  T  S  *  G  W  N  Y  V  Q  C  C  S  S  C  T   </second_frame>
            <third_frame>   E  I  E  E  H  F   : G  G  K  L  L  *  F  S  L  Q  F  S  K  R  N  K  N  L  Q  A  R  L  K  K  Y  K  L  S  H  Y  L  V  V  L  L  Y  F  I  F  M  F  H  F  H  W  F  A  T  M  S  A  R  S  T  T  L  C  E  *  P  H  S  L  S  Y  Q  A  I  T  L  T  M  S  S  P  M  T  M  V  S  E  E  S  T  V  D  D  T  S  L  H  R  K  S  T  D  T  S  G  S  S  Q  T  D  R  M  P  L  S  S  L  S  A  A  S  L  N  A  A  F  T  S  S  A  N  V  F  L  V  T  C  T  T  R  S  T  T  E  T  L  G  V  G  T  R  R  A  M  P  L  S  F  P  L  R  L  G  R  T  R  A  T  A  L  A  A  P  V  E  V  G  T  M  F  S  A  A  A  R  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28507" stop="28142"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSLSYQAITLTMSSPMTMVSEESTVDDTSLHRKSTDTSGSSQTDRMPLSSLSAASLNAAFTSSANVFLVTCTTRSTTETLGVGTRRAMPLSFPLRLGRTRATALAAPVEVGTMFSAAARAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45578" PGL_stop="39444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45578" e_stop="44495"/>
            <exon e_start="44394" e_stop="44058"/>
            <exon e_start="41996" e_stop="41834"/>
            <exon e_start="41609" e_stop="41391"/>
            <exon e_start="40428" e_stop="40280"/>
            <exon e_start="40001" e_stop="39872"/>
            <exon e_start="39787" e_stop="39444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45578" e_stop="44495" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44058" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41834" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41609" e_stop="41391" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40428" e_stop="40280" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40001" e_stop="39872" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39787" e_stop="39444" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45578" stop="45025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45570" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="44561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44495"/>
              <exon start="44394" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44550" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41391"/>
              <exon start="40428" stop="40362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44260" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41470" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39872"/>
              <exon start="39787" stop="39444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39872"/>
              <exon start="39787" stop="39455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N  I  *  H   </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V  I  Y  N  T  </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  Y  I  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44922" stop="44495"/>
                    <exon start="44394" stop="44058"/>
                    <exon start="41996" stop="41834"/>
                    <exon start="41609" stop="41587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGGWYRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45578" e_stop="44495"/>
            <exon e_start="44394" e_stop="44058"/>
            <exon e_start="41996" e_stop="41391"/>
            <exon e_start="40428" e_stop="40280"/>
            <exon e_start="40001" e_stop="39872"/>
            <exon e_start="39787" e_stop="39444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45578" e_stop="44495" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44058" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41391" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41390" i_stop="40429" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40428" e_stop="40280" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40001" e_stop="39872" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39787" e_stop="39444" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45578" stop="45025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45570" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="44561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44495"/>
              <exon start="44394" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44550" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44522" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41848" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39872"/>
              <exon start="39787" stop="39732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41470" stop="41391"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39872"/>
              <exon start="39787" stop="39444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39872"/>
              <exon start="39787" stop="39455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R  F  V  Q  P  Y  P  Q  L  N  L  K  K  A  V  S  *  L  F  L  L  R  T  P  V  R  Q  I  R  C  S  *  W  K  A  Y  L  I  L  L  F  R  W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V  I  Y  N  T  </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y  G  L  S  N  P  I  H  N  *  I  *  K  K  L  S  R  D  S  F  C  *  G  L  L  C  D  K  S  D  A  V  D  G  K  L  T  *  S  F  F  S  G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  Y  I  T  R </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  V  C  P  T  L  S  T  I  K  S  K  K  S  C  L  V  T  L  S  A  K  D  S  C  A  T  N  Q  M  Q  L  M  E  S  L  P  D  P  S  F  Q  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N  I  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44922" stop="44495"/>
                    <exon start="44394" stop="44058"/>
                    <exon start="41996" stop="41391"/>
                    <exon start="40428" stop="40280"/>
                    <exon start="40001" stop="39872"/>
                    <exon start="39787" stop="39692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVCPTLSTIKSKKSCLVTLSAKDSCATNQMQLMESLPDPSFQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45578" e_stop="44495"/>
            <exon e_start="44394" e_stop="44058"/>
            <exon e_start="41996" e_stop="41733"/>
            <exon e_start="41609" e_stop="41528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.612" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45578" e_stop="44495" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44058" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41733" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.612" acc_prob="0.747">
            <gDNA_intron_boundary i_start="41732" i_stop="41610" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41609" e_stop="41528" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45578" stop="45025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45570" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="44561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44495"/>
              <exon start="44394" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44550" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44522" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44140" stop="44058"/>
              <exon start="41996" stop="41733"/>
              <exon start="41609" stop="41538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44138" stop="44058"/>
              <exon start="41996" stop="41733"/>
              <exon start="41609" stop="41528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44922" stop="44495"/>
                    <exon start="44394" stop="44058"/>
                    <exon start="41996" stop="41733"/>
                    <exon start="41609" stop="41529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVAGIGTNENMVDKLLQRSVIKHENNRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45578" e_stop="44495"/>
            <exon e_start="44394" e_stop="44058"/>
            <exon e_start="41996" e_stop="41834"/>
            <exon e_start="41609" e_stop="41283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45578" e_stop="44495" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="44494" i_stop="44395" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44058" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44057" i_stop="41997" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41996" e_stop="41834" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="41833" i_stop="41610" i_length="224"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="41609" e_stop="41283" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45578" stop="45025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45570" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45262" stop="44561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45156" stop="44495"/>
              <exon start="44394" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44550" stop="44495"/>
              <exon start="44394" stop="44058"/>
              <exon start="41996" stop="41896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44311" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44260" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44165" stop="44058"/>
              <exon start="41996" stop="41834"/>
              <exon start="41609" stop="41283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  V  *  N  L  N  E  N  *  Y  A  F  L  I  L  F  G  D  E  F  H  Q  G  L  F  *  V  S  D  L  T  K  Q  I  W  H  T </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G  Y  K  I  S  M  K  T  N  M  H  F  *  Y  C  L  V  M  S  F  I  K  V  C  F  K  *  V  I  *  L  N  K  F  G  T   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T  G  I  K  S  Q  *  K  L  I  C  I  F  D  I  V  W  *  *  V  S  S  R  F  V  L  S  E  *  F  D  *  T  N  L  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44922" stop="44495"/>
                    <exon start="44394" stop="44058"/>
                    <exon start="41996" stop="41834"/>
                    <exon start="41609" stop="41587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGGWYRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="40563" e_stop="40527"/>
            <exon e_start="40428" e_stop="40280"/>
            <exon e_start="40001" e_stop="39872"/>
            <exon e_start="39787" e_stop="39455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.000" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="40563" e_stop="40527" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40526" i_stop="40429" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40428" e_stop="40280" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40279" i_stop="40002" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40001" e_stop="39872" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="39871" i_stop="39788" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39787" e_stop="39455" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40563" stop="40527"/>
              <exon start="40428" stop="40280"/>
              <exon start="40001" stop="39872"/>
              <exon start="39787" stop="39669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39872"/>
              <exon start="39787" stop="39455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</gDNA_template>
            <first_frame> V  N  L  G  *  E  G  A  V  S  R  F   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  </first_frame>
            <second_frame>  *  T  W  A  R  K  G  Q  L  A  D  L  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N </second_frame>
            <third_frame>   K  L  G  L  G  R  G  S  *  Q  I  C :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40559" stop="40527"/>
                    <exon start="40428" stop="40280"/>
                    <exon start="40001" stop="39872"/>
                    <exon start="39787" stop="39692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWARKGQLADLLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="55577" PGL_stop="51940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55577" e_stop="55434"/>
            <exon e_start="53627" e_stop="53417"/>
            <exon e_start="52295" e_stop="52170"/>
            <exon e_start="52092" e_stop="51940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="55577" e_stop="55434" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="55433" i_stop="53628" i_length="1806"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53627" e_stop="53417" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53416" i_stop="52296" i_length="1121"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="52295" e_stop="52170" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52169" i_stop="52093" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52092" e_stop="51940" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55577" stop="55434"/>
              <exon start="53627" stop="53417"/>
              <exon start="52295" stop="52170"/>
              <exon start="52092" stop="52065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53532" stop="53417"/>
              <exon start="52295" stop="52170"/>
              <exon start="52092" stop="51940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA : GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG : GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG : GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</gDNA_template>
            <first_frame> T  A  L  S  S  L  C  P  F  I  F  F  P  F  *  I  L  H  I  N  C  R  L  R  H  G  R  R  F  I  A  T  C  Q  T  S  L  R  *  G  R  *  L  Q  *  S  S  R  :  A  E  A  C  K  V  P  K  G  *  E  G  K  A  G  R  Y  H  D  *  W  V  *  R  *  T  *  W  A  D  R  S  S  Q  C  S  Q  R  A  F  G  T  A  E  S  N  N  S  G  T  P  *  *  R  K  R  R  *  N  S  *  H  I  A  G  R  S  G  I  *   : G  K  *  N  I  H  *  *  W  D  C  N  R  T  F  *  S  E  *  R  E  R  R  R  L  F  *  C  I  R  K  L  C  *  I  F  K  *  K  *  D  K   : G  C  M  A  *  *  C  *  Y  *  E  N  I  F  W  E  E  S  Y  Q  D  I  K  *  R  *  D  S  R  P  Y  I  R  T  T  R  K  D  E  E  A  N  C  *  C  A  R  T  R  R  N  </first_frame>
            <second_frame>  P  L  S  L  H  F  A  P  S  F  F  F  L  S  E  S  F  I  S  I  A  D  Y  A  M  E  E  G  S  S  R  R  A  K  R  P  F  V  E  D  D  D  S  N  K  A  P  E :   Q  K  R  V  R  F  P  K  G  K  K  A  K  Q  G  D  T  T  I  D  G  C  E  D  K  P  S  G  R  T  D  P  R  N  A  A  K  E  R  S  A  R  R  N  Q  I  T  A  E  L  L  D  E  E  N  E  G  E  I  A  D  I  S  R  A  E  V  E  Y  E  :  E  N  E  T  F  I  D  D  G  I  A  I  E  P  F  N  L  N  K  E  R  E  E  G  Y  F  D  A  S  G  N  Y  V  E  Y  L  N  E  N  E  I  K  :  D  A  W  L  D  S  V  D  T  E  K  T  Y  S  G  K  K  A  I  K  I  S  N  E  D  E  I  Q  D  L  T  S  E  Q  L  G  K  M  K  R  R  I  A  D  V  L  E  P  G  E  T </second_frame>
            <third_frame>   R  S  L  F  T  L  P  L  H  F  F  S  F  L  N  P  S  Y  Q  L  P  I  T  P  W  K  K  V  H  R  D  V  P  N  V  P  S  L  R  T  M  T  P  I  K  L  Q   : S  R  S  V  *  G  S  Q  R  V  R  R  Q  S  R  A  I  P  R  L  M  G  V  K  I  N  L  V  G  G  Q  I  L  A  M  Q  P  K  S  V  R  H  G  G  I  K  *  Q  R  N  S  L  M  K  K  T  K  V  K  *  L  T  Y  R  G  Q  K  W  N  M  R :   K  M  K  H  S  L  M  M  G  L  Q  *  N  L  L  I  *  I  K  R  E  K  K  V  I  L  M  H  Q  E  T  M  L  N  I  *  M  K  M  R  *  R :   M  H  G  L  I  V  L  I  L  R  K  H  I  L  G  R  K  L  S  R  Y  Q  M  K  M  R  F  K  T  L  H  Q  N  N  *  E  R  *  R  G  E  L  L  M  C  S  N  Q  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55576" stop="55434"/>
                    <exon start="53627" stop="53417"/>
                    <exon start="52295" stop="52170"/>
                    <exon start="52092" stop="51940"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSLHFAPSFFFLSESFISIADYAMEEGSSRRAKRPFVEDDDSNKAPEQKRVRFPKGKKAKQGDTTIDGCEDKPSGRTDPRNAAKERSARRNQITAELLDEENEGEIADISRAEVEYEENETFIDDGIAIEPFNLNKEREEGYFDASGNYVEYLNENEIKDAWLDSVDTEKTYSGKKAIKISNEDEIQDLTSEQLGKMKRRIADVLEPGET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="81988" PGL_stop="79239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81988" e_stop="81799"/>
            <exon e_start="81255" e_stop="81190"/>
            <exon e_start="80771" e_stop="80697"/>
            <exon e_start="80247" e_stop="80124"/>
            <exon e_start="80037" e_stop="79915"/>
            <exon e_start="79761" e_stop="79239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81988" e_stop="81799" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81798" i_stop="81256" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81255" e_stop="81190" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.977">
            <gDNA_intron_boundary i_start="81189" i_stop="80772" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80771" e_stop="80697" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.620">
            <gDNA_intron_boundary i_start="80696" i_stop="80248" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80247" e_stop="80124" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="80123" i_stop="80038" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80037" e_stop="79915" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="79914" i_stop="79762" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79761" e_stop="79239" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81988" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81960" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81959" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81938" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81937" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81916" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81883" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81883" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81837" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81837" stop="81799"/>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81255" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81228" stop="81190"/>
              <exon start="80771" stop="80697"/>
              <exon start="80247" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80169" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80137" stop="80124"/>
              <exon start="80037" stop="79915"/>
              <exon start="79761" stop="79274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80023" stop="79915"/>
              <exon start="79761" stop="79254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79631" stop="79346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC : GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG : GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG : TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG : CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</gDNA_template>
            <first_frame> S  L  S  V  L  W  N  L  G  F  *  G  L  *  K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F   : R  F  V  G  G  S  N  I  G  E  S  I  Q  K  V  F  *  R  S  L  I  P   : G  E  K  V  I  I  K  L  I  I  N  Q  L  L  E  S  Q  K  Q  I  R  L  M  I  K   : G  H  Y  S  E  H  *  T  R  D  S  I  F  *  S  M  V  P  H  K  V  V  E  S  L  S  G  I  S  L  K  K  F  M  S  L  K  R  I  C  A  S :   V  L  S  L  P  *  N  L  S  L  E  I  F  H  I  H  I  L  L  E  M  P  L  W  V  I  W  S  C  N  P  L  K  T  R  K  S  L  Q  S  S :   A  S  S  S  N  P  K  L  L  Q  P  T  N  L  I  L  G  N  V  M  I  L  S  G  *  P  K  M  N  C  W  N  T  F  P  S  K  L  N  S  *  T  R  *  S  S  A  D  V  S  F  C  S  N  F  R  L  R  R  I  A  E  I  V  L  I  *  K  I  H  F  F  P  Q  M  Q  W  A  W  T  A  G  D  *  F  L  C  L  D  S  L  T  S  M  P  F  I  K  S  C  R  I  L  N  I  G  Y  L  N  Y  D  S  L  L  P  Q  L  S  P  I  L  F  V  R  S  Y  A  K  N  S  E  I  V  M  N  F  S  M  N  M  L  L  *  M  H  D  F  I  S  R  H  K  I  N  K  T  N  Y  M  L  Q  P  *  R  V  A  S  F  V  S  *  L  H  C </first_frame>
            <second_frame>  H  F  Q  Y  C  G  I  W  V  F  R  V  Y  E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  :  V  S  L  E  A  A  I  S  A  R  V  S  R  K  F  S  E  E  V  *  Y  Q  :  G  K  R  *  L  S  N  *  L  *  T  S  S  S  N  L  R  S  R  *  D  *  *  S  K  :  V  I  T  A  S  T  R  Q  E  T  L  S  S  S  P  W  Y  H  T  R  *  W  K  A  C  L  A  F  P  *  K  S  L  *  V  *  R  E  F  A  Q   : V  C  *  V  C  L  R  I  F  H  W  R  S  F  T  Y  I  F  C  W  K  C  P  Y  G  S  Y  G  H  A  T  H  *  R  Q  E  N  P  F  N  Q   : A  L  L  L  Q  I  P  S  Y  C  S  Q  Q  I  *  Y  *  E  M  *  *  F  C  L  G  D  Q  R  *  T  V  G  I  L  S  R  A  S  *  I  P  E  Q  D  D  H  Q  L  T  L  V  S  A  Q  T  S  G  F  V  G  *  R  K  *  F  *  S  E  K  S  I  S  S  R  K  C  N  G  L  G  L  L  E  T  D  F  Y  V  S  T  V  *  L  A  C  H  S  S  S  P  V  E  F  *  T  *  D  T  *  I  M  I  A  F  C  L  S  Y  H  Q  S  S  L  *  E  A  M  L  K  T  L  K  *  S  *  I  L  V  *  I  C  F  C  R  C  T  I  S  S  R  V  I  K  *  T  K  Q  I  T  C  C  S  L  N  E  L  R  A  L  F  H  S  C  I   </second_frame>
            <third_frame>   T  F  S  T  V  E  F  G  F  L  G  F  M  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S :   F  R  W  R  Q  Q  Y  R  R  E  Y  P  E  S  F  L  K  K  S  D  T  R :   G  K  G  D  Y  Q  I  D  Y  K  P  A  P  R  I  S  E  A  D  K  T  N  D  Q  R :   S  L  Q  R  A  L  D  K  R  L  Y  L  L  V  H  G  T  T  Q  G  S  G  K  P  V  W  H  F  P  E  K  V  Y  E  S  E  E  N  L  R  K  :  C  A  E  S  A  L  E  S  F  I  G  D  L  S  H  T  Y  F  V  G  N  A  P  M  G  H  M  V  M  Q  P  T  E  D  K  K  I  P  S  I  K  :  R  F  F  F  K  S  Q  V  I  A  A  N  K  F  D  I  R  K  C  D  D  F  V  W  V  T  K  D  E  L  L  E  Y  F  P  E  Q  A  E  F  L  N  K  M  I  I  S  *  R  *  F  L  L  K  L  Q  A  S  *  D  S  G  N  S  F  D  L  K  N  P  F  L  P  A  N  A  M  G  L  D  C  W  R  L  I  F  M  S  R  Q  S  D  *  H  A  I  H  Q  V  L  *  N  F  E  H  R  I  P  K  L  *  *  P  S  A  S  A  I  T  N  P  L  C  E  K  L  C  *  K  L  *  N  S  H  E  F  *  Y  E  Y  A  F  V  D  A  R  F  H  L  A  S  *  N  K  Q  N  K  L  H  V  A  A  L  T  S  C  E  L  C  F  I  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81986" stop="81799"/>
                    <exon start="81255" stop="81190"/>
                    <exon start="80771" stop="80697"/>
                    <exon start="80247" stop="80124"/>
                    <exon start="80037" stop="79915"/>
                    <exon start="79761" stop="79618"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSTVEFGFLGFMKMQRCCSSAIGKRWFSSFNNDKIVASVLFERLPVVVPKIDPTVYAFQEFSFRWRQQYRREYPESFLKKSDTRGKGDYQIDYKPAPRISEADKTNDQRSLQRALDKRLYLLVHGTTQGSGKPVWHFPEKVYESEENLRKCAESALESFIGDLSHTYFVGNAPMGHMVMQPTEDKKIPSIKRFFFKSQVIAANKFDIRKCDDFVWVTKDELLEYFPEQAEFLNKMIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81948" e_stop="81416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="81948" e_stop="81416" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81948" stop="81416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81947" stop="81500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358599" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</gDNA_template>
            <first_frame> E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  V  S  F  F  F  F  S  V  Q  L  L  H  E  I  E  V  *  S  I  P  F  V  I  Q  L  Q  *  F  T  F  R  A  I  I  A  G  S  Y  N  R  M  I  K  T  F  T  S  V  D  F  F  F  R  F  S  E  T  V  L  V  N  *  G  L  R  G  T  L  I  C  L  L  E  K  N  S  A  K  K  Q  *  F  Y  A  L  V  R  S  N  Y  E  S  S  L  F  C  K  F  D  E  V  N  L  R  K  K  I  V  S  F  V  Q  N  F  A  V  V  S  N  A  *  E  I  M  C  N  E   </first_frame>
            <second_frame>  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S  *  V  F  S  F  F  L  F  N  C  C  T  K  S  K  C  N  Q  S  L  L  *  S  N  Y  N  D  L  L  L  E  R  *  L  L  V  R  I  I  E  *  S  K  H  L  L  V  L  I  F  F  F  A  F  Q  K  L  C  W  L  I  R  D  *  G  V  L  *  Y  V  C  L  R  K  I  V  L  K  N  N  N  F  M  P  *  S  G  Q  I  M  N  L  R  Y  F  V  S  L  M  K  *  I  Y  E  R  K  *  F  L  L  S  K  I  L  Q  W  F  L  M  L  R  R  *  C  V  M  K  </second_frame>
            <third_frame>   K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F  R  K  F  F  L  F  F  C  S  I  V  A  R  N  R  S  V  I  N  P  F  C  N  P  I  T  M  I  Y  F  *  S  D  N  C  W  F  V  *  *  N  D  Q  N  I  Y  *  C  *  F  F  F  S  L  F  R  N  C  A  G  *  L  G  I  K  G  Y  F  D  M  F  A  *  E  K  *  C  *  K  T  I  I  L  C  L  S  Q  V  K  L  *  I  F  A  I  L  *  V  *  *  S  K  S  T  K  E  N  S  F  F  C  P  K  F  C  S  G  F  *  C  L  G  D  N  V  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84225" PGL_stop="84810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84225" e_stop="84810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="84225" e_stop="84810" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84225" stop="84810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTACACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTAGGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAA</gDNA_template>
            <first_frame> A  R  P  L  L  Q  E  T  S  T  K  I  L  I  Y  P  L  A  S  L  H  T  L  G  Y  V  F  L  K  S  T  T  Q  W  I  F  L  R  L  S  *  N  P  S  K  V  A  P  W  E  L  *  D  C  W  K  R  W  M  K  E  I  *  K  T  T  F  V  I  Y  *  K  N  A  N  T  L  W  W  L  M  M  S  G  K  E  K  H  G  R  V  *  K  E  H  S  R  M  T  R  M  A  A  E  S  L  L  P  R  A  K  R  I  S  L  K  E  Q  P  T  E  V  L  F  I  N  F  V  S  *  V  K  K  K  V  G  I  S  F  L  G  N  Y  L  M  F  E  Q  W  L  Q  K  W  K  V  *  L  R  I  W  W  K  S  V  E  V  Y  L  L  Q  L  L  Y  *  A  D  Y  F  R  I  K  R  I  *  M  N  G  K  R  *  K  I  T  F  G  </first_frame>
            <second_frame>  Q  D  H  S  C  K  K  P  L  Q  K  S  *  Y  I  L  S  L  P  Y  T  R  L  D  M  C  F  S  R  V  Q  H  N  G  S  S  *  D  Y  H  K  I  H  P  R  S  H  H  G  N  S  R  I  V  G  K  D  G  *  K  R  S  R  K  P  P  S  *  S  I  E  R  T  Q  I  P  C  G  G  *  *  C  L  A  K  R  S  M  G  E  F  E  K  S  I  P  G  *  Q  E  W  Q  Q  S  H  Y  Y  H  A  Q  R  G  Y  R  *  K  S  S  R  Q  R  F  C  S  *  T  S  F  P  K  S  R  R  K  L  G  S  L  S  *  E  T  T  *  C  S  S  N  G  C  R  N  G  K  S  S  *  G  Y  G  G  K  V  *  R  F  T  S  C  N  C  C  I  E  R  T  T  F  A  *  K  G  S  R  *  M  A  K  G  E  R  S  P  L  E </second_frame>
            <third_frame>   K  T  T  L  A  R  N  L  Y  K  N  P  N  I  S  S  R  F  P  T  H  A  W  I  C  V  S  Q  E  Y  N  T  M  D  L  L  K  T  I  I  K  S  I  Q  G  R  T  M  G  T  L  G  L  L  E  K  M  D  E  R  D  L  E  N  H  L  R  D  L  L  K  E  R  K  Y  L  V  V  V  D  D  V  W  Q  R  E  A  W  E  S  L  K  R  A  F  P  D  D  K  N  G  S  R  V  I  I  T  T  R  K  E  D  I  A  E  R  A  A  D  R  G  F  V  H  K  L  R  F  L  S  Q  E  E  S  W  D  L  F  L  R  K  L  L  D  V  R  A  M  V  A  E  M  E  S  L  A  K  D  M  V  E  K  C  R  G  L  P  L  A  I  V  V  L  S  G  L  L  S  H  K  K  D  L  D  E  W  Q  K  V  K  D  H  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84227" stop="84808"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTTLARNLYKNPNISSRFPTHAWICVSQEYNTMDLLKTIIKSIQGRTMGTLGLLEKMDERDLENHLRDLLKERKYLVVVDDVWQREAWESLKRAFPDDKNGSRVIITTRKEDIAERAADRGFVHKLRFLSQEESWDLFLRKLLDVRAMVAEMESLAKDMVEKCRGLPLAIVVLSGLLSHKKDLDEWQKVKDHLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="84950" PGL_stop="84308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84950" e_stop="84308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84950" e_stop="84308" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84950" stop="84555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84948" stop="84308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84948" stop="84480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</gDNA_template>
            <first_frame> L  C  F  Q  P  *  P  L  D  L  L  E  T  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  V  I  V  C  W  R  F  Q  Q  I  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  A  I  H  L  D  P  F  Y  A  K  V  V  R  S  I  Q  Q  L  Q  E  V  N  L  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  Q  P  L  L  E  H  Q  V  V  S  *  E  R  D  P  N  F  L  L  D  L  G  N  E  V  Y  E  Q  N  L  C  R  L  L  F  Q  R  Y  P  L  C  A  W  *  *  *  L  C  C  H  S  C  H  P  G  M  L  F  S  N  S  P  M  L  L  F  A  R  H  H  Q  P  P  Q  G  I  C  V  L  S  I  D  H  E  G  G  F  L  D  L  F  H  P  S  F  P  T  I  L  E  F  P  W  C  D  L  G  W  I  L  *  *  S  *  E  D  P  L  C  C  T  L  </first_frame>
            <second_frame>  C  V  F  S  L  D  H  S  I  F  W  K  H  T  K  V  E  K  T  L  L  E  L  N  *  Q  I  I  V  A  *  *  *  Y  V  G  D  F  N  R  F  I  F  F  N  A  L  P  K  V  I  F  H  L  L  P  F  I  *  I  L  F  M  R  K  *  S  A  Q  Y  N  N  C  K  R  *  T  S  T  L  F  H  H  I  L  S  *  T  F  H  F  C  N  H  C  S  N  I  K  *  F  P  K  K  E  I  P  T  F  F  L  T  *  E  T  K  F  M  N  K  T  S  V  G  C  S  F  S  D  I  L  F  A  R  G  N  N  D  S  A  A  I  L  V  I  R  E  C  S  F  Q  T  L  P  C  F  S  L  P  D  I  I  N  H  H  K  V  F  A  F  F  Q  *  I  T  K  V  V  F  *  I  S  F  I  H  L  F  Q  Q  S  *  S  S  H  G  A  T  L  D  G  F  Y  D  S  L  K  K  I  H  C  V  V  L  L </second_frame>
            <third_frame>   V  F  S  A  L  T  T  R  S  S  G  N  I  P  K  *  R  K  H  C  L  S  S  I  D  K  S  L  *  L  S  D  S  M  L  E  I  S  T  D  L  S  S  L  M  L  F  Q  R  *  S  F  T  F  C  H  S  S  R  S  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  A  T  I  A  R  T  S  S  S  F  L  R  K  R  S  Q  L  S  S  *  L  R  K  R  S  L  *  T  K  P  L  S  A  A  L  S  A  I  S  S  L  R  V  V  I  M  T  L  L  P  F  L  S  S  G  N  A  L  F  K  L  S  H  A  S  L  C  Q  T  S  S  T  T  T  R  Y  L  R  S  F  N  R  S  R  R  W  F  S  R  S  L  S  S  I  F  S  N  N  P  R  V  P  M  V  R  P  W  M  D  F  M  I  V  L  R  R  S  I  V  L  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84594" stop="84310"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKPLSAALSAISSLRVVIMTLLPFLSSGNALFKLSHASLCQTSSTTTRYLRSFNRSRRWFSRSLSSIFSNNPRVPMVRPWMDFMIVLRRSIVLYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="96852" PGL_stop="93455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96852" e_stop="96818"/>
            <exon e_start="94115" e_stop="93455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96852" e_stop="96818" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="96817" i_stop="94116" i_length="2702"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94115" e_stop="93455" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96852" stop="96818"/>
              <exon start="94115" stop="93532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94016" stop="93455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94016" stop="93485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</gDNA_template>
            <first_frame> V  A  D  N  Q  W  I  F  T  Y  L  R :   V  Y  F  E  E  G  E  C  S  N  S  S  F  F  L  V  E  K  Y  I  S  R  *  W  K  L  K  L  R  P  F  T  T  T  Y  K  L  V  K  L  I  L  S  C  F  R  Y  N  F  *  L  E  Y  S  E  C  P  P  F  S  R  L  S  S  F  Y  S  T  R  N  S  S  A  R  V  V  L  Q  K  K  S  N  Q  N  N  G  *  S  G  C  S  *  Q  G  W  N  K  E  V  A  S  V  D  V  C  Y  I  C  C  *  S  S  K  G  K  S  Q  N  *  *  S  R  Q  *  *  Y  Y  R  E  G  D  C  H  S  E  T  E  K  *  K  D  *  G  *  K  G  N  I  H  *  G  V  V  H  S  A  S  N  M  P  N  N  K  K  K  Q  K  K  I  K  P  T  K  *  L  L  *  *  *  K  H  F  N  G  E  *  M  *  Q  Q  A  S  K  W  *  W  R  G  S  Y  V  E  E  T  E  T  E  N  E  E  F  Q  D  *  E  S  C  *  D  G </first_frame>
            <second_frame>  S  P  I  I  S  G  F  S  P  I  *   : G  C  T  L  R  K  V  N  A  Q  I  R  H  S  F  *  W  K  N  T  S  R  D  D  G  N  *  N  C  V  P  L  P  L  R  I  S  W  S  S  *  F  *  V  V  F  G  T  T  F  S  L  N  I  L  S  V  L  L  S  L  D  *  V  A  F  T  L  Q  E  I  H  L  L  E  *  F  C  K  R  K  A  I  K  I  M  D  D  R  V  V  L  D  K  G  G  T  R  K  L  P  Q  W  M  F  A  T  S  A  A  D  Q  V  K  E  K  A  K  T  D  K  V  D  N  N  N  T  T  E  K  E  I  V  T  Q  K  Q  K  N  R  R  I  K  D  K  K  E  T  F  T  E  E  S  S  T  Q  L  P  I  C  Q  T  T  K  R  S  R  R  K  L  N  L  P  N  D  Y  C  N  D  E  S  T  S  M  G  S  E  C  D  S  K  Q  A  S  G  D  G  E  V  P  M  L  R  R  Q  K  Q  K  T  K  N  S  K  T  E  R  V  A  E  M   </second_frame>
            <third_frame>   R  R  *  S  V  D  F  H  L  F  E  :  G  V  L  *  G  R  *  M  L  K  F  V  I  L  F  S  G  K  I  H  L  E  M  M  E  I  E  I  A  S  L  Y  H  Y  V  *  A  G  Q  A  D  F  E  L  F  S  V  Q  L  L  A  *  I  F  *  V  S  S  F  L  S  T  E  *  L  L  L  Y  K  K  F  I  C  *  S  S  S  A  K  E  K  Q  S  K  *  W  M  I  G  L  F  L  T  R  V  E  Q  G  S  C  L  S  G  C  L  L  H  L  L  L  I  K  *  R  K  K  P  K  L  I  K  *  T  I  I  I  L  Q  R  R  R  L  S  L  R  N  R  K  I  E  G  L  R  I  K  R  K  H  S  L  R  S  R  P  L  S  F  Q  Y  A  K  Q  Q  K  E  A  E  E  N  *  T  Y  Q  M  I  I  V  M  M  K  A  L  Q  W  G  V  N  V  T  A  S  K  Q  V  V  M  E  R  F  L  C  *  G  D  R  N  R  K  R  R  I  P  R  L  R  E  L  L  R  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93888" stop="93457"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKRKAIKIMDDRVVLDKGGTRKLPQWMFATSAADQVKEKAKTDKVDNNNTTEKEIVTQKQKNRRIKDKKETFTEESSTQLPICQTTKRSRRKLNLPNDYCNDESTSMGSECDSKQASGDGEVPMLRRQKQKTKNSKTERVAEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="99970" PGL_stop="104408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99970" e_stop="100517"/>
            <exon e_start="104156" e_stop="104408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99970" e_stop="100517" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100518" i_stop="104155" i_length="3638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104156" e_stop="104408" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99970" stop="100517"/>
              <exon start="104156" stop="104361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99983" stop="100517"/>
              <exon start="104156" stop="104408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99988" stop="100332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</gDNA_template>
            <first_frame> S  L  S  R  G  V  T  G  V  V  V  S  K  C  R  R  I  M  G  T  I  S  L  D  R  G  L  S  N  *  S  R  I  W  Q  K  M  I  Q  T  D  M  G  L  L  R  R  R  E  Q  R  W  R  G  S  L  P  S  K  L  M  R  N  *  C  V  L  N  W  H  S  V  L  F  V  R  M  I  L  R  W  G  Q  M  *  Y  R  C  L  V  S  M  F  I  I  R  I  V  S  Y  R  G  L  S  C  T  V  L  A  R  F  V  A  M  S  C  Q  R  M  S  L  R  M  R  T  G  K  E  T  M  M  G  T  R  A  G  M  V  L  L  L  E  V  G  D  Q  G  E  G  L  L  Q  Y  H  C  H  G  L  W  E  A  L  E  H  H  L  A  R  D  D  P  S  L  V  G  S  G  T  G  S  L  I  R :   W  Y  P  C  L  Q  V  V  S  W  M  T  K  L  E  E  L  L  G  R  *  L  E  N  A  T  K  V  K  D  *  V  S  S  L  K  T  *  I  Q  G  L  H  K  P  Q  I  V  L  Q  D  V  C  L  N  V  L  H  Q  M  S  K  V  F  I  Y  A  S  S  I  A  N  F  A  D  C  F  S  P  C  A  V  D  L </first_frame>
            <second_frame>  R  Y  R  G  G  *  R  G  *  W  S  P  N  A  G  E  L  W  G  L  F  H  W  T  G  V  *  A  I  D  P  E  F  G  R  K  *  S  K  P  I  W  D  S  S  G  V  E  S  S  G  G  G  A  P  Y  H  Q  S  *  *  G  I  D  A  F  *  T  G  T  V  C  C  L  *  G  *  F  *  D  G  V  R  C  D  T  D  A  L  *  A  C  L  S  *  G  L  Y  H  T  V  A  *  V  A  Q  F  L  P  G  L  S  L  *  V  A  N  G  *  A  *  E  *  E  Q  A  K  R  Q  *  W  G  L  E  R  G  W  F  C  F  W  K  W  G  I  R  E  K  V  Y  Y  N  I  I  A  M  A  F  G  K  L  W  S  I  I  *  P  G  M  I  R  V  S  W  A  A  E  Q  G  V  *  L   : G  G  I  L  A  C  R  L  Y  H  G  *  Q  S  W  R  S  C  W  V  D  N  *  K  M  L  Q  R  *  R  I  R  F  H  L  L  K  H  R  Y  R  V  Y  T  N  P  R  *  Y  C  K  M  F  V  *  M  F  C  I  R  C  P  K  F  S  F  M  L  H  Q  S  R  I  L  R  I  V  L  V  L  V  Q  L  I   </second_frame>
            <third_frame>   V  I  E  G  G  N  G  G  S  G  L  Q  M  P  A  N  Y  G  D  Y  F  I  G  P  G  F  E  Q  L  I  Q  N  L  A  E  N  D  P  N  R  Y  G  T  P  P  A  S  R  A  A  V  E  G  L  P  T  I  K  V  D  E  E  L  M  R  S  E  L  A  Q  C  A  V  C  K  D  D  F  E  M  G  S  D  V  I  Q  M  P  C  K  H  V  Y  H  K  D  C  I  I  P  W  L  E  L  H  S  S  C  P  V  C  R  Y  E  L  P  T  D  E  P  E  N  E  N  R  Q  R  D  N  D  G  D  S  S  G  D  G  S  A  S  G  S  G  G  S  G  R  R  F  T  T  I  S  L  P  W  P  L  G  S  F  G  A  S  S  S  Q  G  *  S  E  S  R  G  Q  R  N  R  E  S  N  *  :  V  V  S  L  L  A  G  C  I  M  D  D  K  V  G  G  V  V  G  *  I  I  R  K  C  Y  K  G  K  G  L  G  F  I  S  *  N  I  D  T  G  S  T  Q  T  P  D  S  I  A  R  C  L  S  E  C  F  A  S  D  V  Q  S  F  H  L  C  F  I  N  R  E  F  C  G  L  F  *  S  L  C  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99972" stop="100478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEGGNGGSGLQMPANYGDYFIGPGFEQLIQNLAENDPNRYGTPPASRAAVEGLPTIKVDEELMRSELAQCAVCKDDFEMGSDVIQMPCKHVYHKDCIIPWLELHSSCPVCRYELPTDEPENENRQRDNDGDSSGDGSASGSGGSGRRFTTISLPWPLGSFGASSSQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="115206" PGL_stop="115985"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115206" e_stop="115985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="115206" e_stop="115985" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115206" stop="115686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115217" stop="115929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115246" stop="115985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</gDNA_template>
            <first_frame> D  L  V  F  F  Y  I  F  V  V  L  G  L  C  F  F  F  F  C  F  H  E  S  S  F  F  Y  Y  L  K  L  Q  L  N  L  L  Y  *  F  V  K  V  F  F  L  L  L  F  G  V  L  F  N  *  A  L  F  S  R  A  W  *  I  C  C  F  S  S  L  L  G  F  A  Q  F  S  S  *  I  P  Y  W  C  S  I  W  T  *  F  S  I  I  C  C  F  L  F  V  G  V  C  S  I  Q  L  T  I  P  V  L  V  L  Y  F  G  F  D  F  R  L  L  L  G  F  V  C  *  *  I  L  V  I  F  H  H  Y  R  F  C  C  *  C  F  E  L  L  M  S  T  S  A  E  G  N  G  A  I  I  D  P  Q  R  Q  Q  Q  Q  A  P  T  G  V  G  T  N  G  A  L  T  V  K  K  P  P  V  K  D  R  H  S  K  V  D  G  R  G  R  R  I  R  M  P  I  V  C  A  A  R  V  F  Q  L  T  R  E  L  G  H  K  S  D  G  Q  T  I  E  W  L  L  R  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  S  F  S  T  V  S  V  S  V  R  N  S  T  A </first_frame>
            <second_frame>  I  L  Y  F  F  T  Y  L  L  F  W  G  S  V  F  F  F  F  A  S  M  N  R  A  F  S  I  T  *  N  F  N  *  T  C  F  I  D  L  *  K  F  F  F  F  F  C  L  G  F  C  L  I  E  L  C  F  P  E  L  G  E  F  V  V  F  L  L  C  W  G  L  L  N  S  A  H  K  S  H  I  G  A  L  F  G  P  D  F  Q  L  F  V  V  F  Y  L  L  G  F  A  Q  F  S  S  Q  F  P  Y  *  Y  S  I  L  D  L  I  F  D  Y  C  W  V  L  F  V  D  K  S  *  *  F  S  T  T  T  V  F  A  A  S  V  L  S  F  *  C  R  R  L  Q  R  E  M  E  L  *  L  I  L  R  G  N  N  N  R  R  L  L  G  L  V  Q  M  V  L  *  Q  *  K  N  R  R  *  K  T  G  I  V  R  L  M  V  E  E  D  V  *  G  C  Q  L  Y  V  R  Q  E  F  F  S  L  L  V  N  W  V  I  N  P  M  D  K  L  L  N  G  C  F  V  K  L  S  L  Q  L  *  L  L  L  V  L  V  L  F  L  L  V  S  R  L  Y  L  Y  R  Y  G  T  Q  L   </second_frame>
            <third_frame>   S  C  I  F  L  H  I  C  C  F  G  A  L  F  F  F  F  L  L  P  *  I  E  L  F  L  L  L  E  T  S  T  E  P  A  L  L  I  C  K  S  F  F  S  S  F  V  W  G  F  V  *  L  S  S  V  F  Q  S  L  V  N  L  L  F  F  F  F  V  G  V  C  S  I  Q  L  I  N  P  I  L  V  L  Y  L  D  L  I  F  N  Y  L  L  F  F  I  C  W  G  L  L  N  S  A  H  N  S  R  I  S  T  L  F  W  I  *  F  S  I  I  V  G  F  C  L  L  I  N  P  S  N  F  P  P  L  P  F  L  L  L  V  F  *  A  S  N  V  D  V  C  R  G  K  W  S  Y  N  *  S  S  E  A  T  T  T  G  A  Y  W  G  W  Y  K  W  C  F  N  S  E  K  T  A  G  K  R  P  A  *  *  G  *  W  *  R  K  T  Y  K  D  A  N  C  M  C  G  K  S  F  S  A  Y  S  *  I  G  S  *  I  R  W  T  N  Y  *  M  A  A  S  S  S  *  A  F  N  Y  S  C  Y  W  Y  W  Y  Y  S  C  *  F  L  D  C  I  C  I  G  T  E  L  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115629" stop="115985"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFELLMSTSAEGNGAIIDPQRQQQQAPTGVGTNGALTVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTVSVSVRNSTA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115327" stop="115536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFFFFCLGFCLIELCFPELGEFVVFLLCWGLLNSAHKSHIGALFGPDFQLFVVFYLLGFAQFSSQFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115779" PGL_stop="115514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115779" e_stop="115514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="115779" e_stop="115514" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115779" stop="115514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACCTTACTATGCCGGTCTTTTACCGGCGGTTTTTTCACTGTTAAAGCACCATTTGTACCAACCCCAGTAGGCGCCTGTTGTTGTTGCCTCTGAGGATCAATTATAGCTCCATTTCCCTCTGCAGACGTCGACATTAGAAGCTCAAAACACTAGCAGCAAAAACGGTAGTGGTGGAAAATTACTAGGATTTATCAACAAACAAAACCCAACAATAATCGAAAATCAAATCCAAAATAGAGTACTAATACGGGAATTGTGAGCTGA</gDNA_template>
            <first_frame> Q  P  Y  Y  A  G  L  L  P  A  V  F  S  L  L  K  H  H  L  Y  Q  P  Q  *  A  P  V  V  V  A  S  E  D  Q  L  *  L  H  F  P  L  Q  T  S  T  L  E  A  Q  N  T  S  S  K  N  G  S  G  G  K  L  L  G  F  I  N  K  Q  N  P  T  I  I  E  N  Q  I  Q  N  R  V  L  I  R  E  L  *  A   </first_frame>
            <second_frame>  N  L  T  M  P  V  F  Y  R  R  F  F  H  C  *  S  T  I  C  T  N  P  S  R  R  L  L  L  L  P  L  R  I  N  Y  S  S  I  S  L  C  R  R  R  H  *  K  L  K  T  L  A  A  K  T  V  V  V  E  N  Y  *  D  L  S  T  N  K  T  Q  Q  *  S  K  I  K  S  K  I  E  Y  *  Y  G  N  C  E  L  </second_frame>
            <third_frame>   T  L  L  C  R  S  F  T  G  G  F  F  T  V  K  A  P  F  V  P  T  P  V  G  A  C  C  C  C  L  *  G  S  I  I  A  P  F  P  S  A  D  V  D  I  R  S  S  K  H  *  Q  Q  K  R  *  W  W  K  I  T  R  I  Y  Q  Q  T  K  P  N  N  N  R  K  S  N  P  K  *  S  T  N  T  G  I  V  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="116957" PGL_stop="116138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116957" e_stop="116138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="116957" e_stop="116138" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116957" stop="116138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116956" stop="116450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAAATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA</gDNA_template>
            <first_frame> K  S  I  A  I  F  *  V  G  K  F  K  L  T  T  D  I  V  S  T  N  Y  R  I  E  F  N  G  N  R  H  G  F  L  T  K  H  S  C  G  T  T  G  F  H  S  P  H  *  S  P  I  I  S  C  Y  N  V  I  K  A  A  Y  C  E  V  C  K  Q  Q  N  K  P  H  Q  I  H  H  H  K  Q  Q  L  P  L  M  L  V  F  R  V  I  V  P  Q  L  T  T  P  K  L  G  E  R  K  L  L  T  N  E  I  *  Q  T  N  L  I  L  A  I  I  H  E  I  E  Q  A  P  S  S  F  L  T  H  *  N  L  A  T  N  F  S  S  N  T  N  K  N  I  K  T  H  L  Y  D  I  L  T  T  I  T  I  T  I  T  I  T  I  I  I  S  S  T  S  V  V  V  S  S  P  G  R  G  L  W  R  T  *  *  R  S  *  Q  I  E  M  P  L  S  H  W  *  V  I  P  N  S  S  S  *  S  L  T  H  L  L  L  K  E  S  R  T  L  R  T  *  R  C  R  G  C  S  C  C  S  R  G  G  W  H  H  H  F  R  W  R  C  R  R  K  A  P  N  L  T  K  I  R  P  S  W  N  S  P  K  P  S  C  G  T  H  S  S  </first_frame>
            <second_frame>  S  P  *  Q  S  F  E  *  E  S  L  S  S  Q  L  I  *  F  Q  Q  I  T  E  L  N  S  T  E  T  A  M  V  S  L  Q  N  I  H  V  E  L  Q  V  F  I  V  H  T  D  P  L  L  Y  L  V  T  M  *  S  K  Q  L  I  V  R  S  A  N  N  R  T  N  P  T  K  F  I  I  T  S  N  N  F  P  *  C  L  C  F  V  L  S  S  H  S  L  Q  H  Q  N  S  V  N  V  N  S  *  Q  M  R  Y  S  K  Q  T  *  S  *  Q  *  F  M  K  L  N  K  P  L  V  H  F  S  L  T  R  T  *  Q  Q  I  S  H  L  T  Q  T  R  T  L  K  H  I  Y  T  I  Y  *  Q  Q  *  R  *  Q  *  Q  *  Q  *  S  Y  L  Q  R  P  S  S  S  L  L  P  E  E  G  C  G  G  P  D  R  E  A  S  K  L  R  C  P  *  V  I  G  K  *  F  P  T  L  A  A  E  A  S  P  I  C  C  *  K  N  L  E  L  C  E  L  N  A  A  A  A  A  A  A  A  A  A  E  V  G  T  I  I  S  G  G  G  A  A  A  K  L  Q  I  *  P  K  S  G  L  A  G  T  A  Q  N  P  A  V  G  P  T  A  V </second_frame>
            <third_frame>   V  H  S  N  L  L  S  R  K  V  *  A  H  N  *  Y  S  F  N  K  L  Q  N  *  I  Q  R  K  P  P  W  F  P  Y  K  T  F  M  W  N  Y  R  F  S  *  S  T  L  I  P  Y  Y  I  L  L  Q  C  D  Q  S  S  L  L  *  G  L  Q  T  T  E  Q  T  P  P  N  S  S  S  Q  A  T  T  S  P  D  A  C  V  S  C  Y  R  P  T  A  Y  N  T  K  T  R  *  T  *  T  L  D  K  *  D  I  A  N  K  P  N  P  S  N  N  S  *  N  *  T  S  P  *  F  I  S  H  S  L  E  P  S  N  K  F  L  I  *  H  K  Q  E  H  *  N  T  F  I  R  Y  I  N  N  N  N  D  N  N  N  N  N  N  N  H  I  F  N  V  R  R  R  L  F  S  R  K  R  A  V  E  D  L  I  E  K  L  A  N  *  D  A  L  E  S  L  V  S  N  S  Q  L  *  Q  L  K  P  H  P  S  A  A  E  R  I  *  N  S  A  N  L  T  L  P  R  L  Q  L  L  Q  P  R  R  L  A  P  S  F  Q  V  A  V  P  P  Q  S  S  K  F  D  Q  N  Q  A  *  L  E  Q  P  K  T  Q  L  W  D  P  Q  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="116229" PGL_stop="117642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116229" e_stop="116976"/>
            <exon e_start="117624" e_stop="117641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.435" e_score="0.963"/>
          <exon-only e_score="0.611"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="116229" e_stop="116976" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.435">
            <gDNA_intron_boundary i_start="116977" i_stop="117623" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="117624" e_stop="117641" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116229" stop="116976"/>
              <exon start="117624" stop="117641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116250" stop="116716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116299" stop="116917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116550" stop="116964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTCAACTTA : AAGATAAAGCATATAGAT</gDNA_template>
            <first_frame> E  M  M  V  P  T  S  A  A  A  A  A  A  A  A  A  A  L  S  S  Q  S  S  R  F  F  Q  Q  Q  M  G  E  A  S  A  A  R  V  G  N  Y  L  P  M  T  Q  G  H  L  N  L  L  A  S  L  S  G  P  P  Q  P  S  S  G  R  R  D  D  D  G  R  *  R  Y  D  Y  C  Y  C  Y  C  Y  R  Y  C  C  *  Y  I  V  *  M  C  F  N  V  L  V  C  V  R  *  E  I  C  C  *  V  L  V  S  E  K  *  T  R  G  L  F  N  F  M  N  Y  C  *  D  *  V  C  L  L  Y  L  I  C  Q  E  F  T  F  T  E  F  W  C  C  K  L  W  D  D  N  T  K  H  K  H  Q  G  K  L  L  L  V  M  M  N  L  V  G  F  V  L  L  F  A  D  L  T  I  S  C  F  D  H  I  V  T  R  Y  N  R  G  S  V  W  T  M  K  T  C  S  S  T  *  M  F  C  K  E  T  M  A  V  S  V  E  F  N  S  V  I  C  *  N  Y  I  S  C  E  L  K  L  S  Y  S  K  D  C  Y  G  L  Q  F  I  T  Q  L   : K  D  K  A  Y  R  </first_frame>
            <second_frame>  K  *  W  C  Q  P  P  R  L  Q  Q  L  Q  P  R  Q  R  *  V  R  R  V  L  D  S  F  S  S  R  W  V  R  L  Q  L  L  E  L  G  I  T  Y  Q  *  L  K  G  I  S  I  C  *  L  L  Y  Q  V  L  H  S  P  L  P  G  E  E  T  T  T  D  V  E  D  M  I  I  V  I  V  I  V  I  V  I  V  V  N  I  S  Y  K  C  V  L  M  F  L  F  V  L  D  E  K  F  V  A  R  F  *  *  V  R  N  E  L  G  A  C  S  I  S  *  I  I  A  R  I  R  F  V  C  Y  I  S  F  V  K  S  L  R  S  P  S  F  G  V  V  S  C  G  T  I  T  R  N  T  S  I  R  G  S  C  C  L  *  *  *  I  W  W  G  L  F  C  C  L  Q  T  S  Q  *  A  A  L  I  T  L  *  Q  D  I  I  G  D  Q  C  G  L  *  K  P  V  V  P  H  E  C  F  V  R  K  P  W  R  F  P  L  N  S  I  L  *  F  V  E  T  I  S  V  V  S  L  N  F  P  T  Q  K  I  A  M  D  F  N  L  L  L  N  L  :  K  I  K  H  I  D </second_frame>
            <third_frame>   N  D  G  A  N  L  R  G  C  S  S  C  S  R  G  S  V  K  F  A  E  F  *  I  L  S  A  A  D  G  *  G  F  S  C  *  S  W  E  L  L  T  N  D  S  R  A  S  Q  F  A  S  F  S  I  R  S  S  T  A  L  F  R  E  K  R  R  R  R  T  L  K  I  *  L  L  L  L  L  L  L  S  L  L  L  L  I  Y  R  I  N  V  F  *  C  S  C  L  C  *  M  R  N  L  L  L  G  S  S  E  *  E  M  N  *  G  L  V  Q  F  H  E  L  L  L  G  L  G  L  F  A  I  S  H  L  S  R  V  Y  V  H  R  V  L  V  L  *  A  V  G  R  *  H  E  T  Q  A  S  G  E  V  V  A  C  D  D  E  F  G  G  V  C  S  V  V  C  R  P  H  N  K  L  L  *  S  H  C  N  K  I  *  *  G  I  S  V  D  Y  E  N  L  *  F  H  M  N  V  L  *  G  N  H  G  G  F  R  *  I  Q  F  C  N  L  L  K  L  Y  Q  L  *  A  *  T  F  L  L  K  R  L  L  W  T  S  I  Y  Y  S  T  * :   R  *  S  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116613" stop="116846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLYLICQEFTFTEFWCCKLWDDNTKHKHQGKLLLVMMNLVGFVLLFADLTISCFDHIVTRYNRGSVWTMKTCSST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116229" stop="116444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMMVPTSAAAAAAAAAALSSQSSRFFQQQMGEASAARVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116250" e_stop="116913"/>
            <exon e_start="117624" e_stop="117642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.435" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116250" e_stop="116913" e_length="664"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.435">
            <gDNA_intron_boundary i_start="116914" i_stop="117623" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="0.579">
            <gDNA_exon_boundary e_start="117624" e_stop="117642" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116250" stop="116716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116536" stop="116913"/>
              <exon start="117624" stop="117642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCA : AAGATAAAGCATATAGATA</gDNA_template>
            <first_frame> A  A  A  A  A  A  A  A  A  A  L  S  S  Q  S  S  R  F  F  Q  Q  Q  M  G  E  A  S  A  A  R  V  G  N  Y  L  P  M  T  Q  G  H  L  N  L  L  A  S  L  S  G  P  P  Q  P  S  S  G  R  R  D  D  D  G  R  *  R  Y  D  Y  C  Y  C  Y  C  Y  R  Y  C  C  *  Y  I  V  *  M  C  F  N  V  L  V  C  V  R  *  E  I  C  C  *  V  L  V  S  E  K  *  T  R  G  L  F  N  F  M  N  Y  C  *  D  *  V  C  L  L  Y  L  I  C  Q  E  F  T  F  T  E  F  W  C  C  K  L  W  D  D  N  T  K  H  K  H  Q  G  K  L  L  L  V  M  M  N  L  V  G  F  V  L  L  F  A  D  L  T  I  S  C  F  D  H  I  V  T  R  Y  N  R  G  S  V  W  T  M  K  T  C  S  S  T  *  M  F  C  K  E  T  M  A  V  S  V  E  F  N  S  V  I  C  *  N  Y  I   : K  D  K  A  Y  R   </first_frame>
            <second_frame>  R  L  Q  Q  L  Q  P  R  Q  R  *  V  R  R  V  L  D  S  F  S  S  R  W  V  R  L  Q  L  L  E  L  G  I  T  Y  Q  *  L  K  G  I  S  I  C  *  L  L  Y  Q  V  L  H  S  P  L  P  G  E  E  T  T  T  D  V  E  D  M  I  I  V  I  V  I  V  I  V  I  V  V  N  I  S  Y  K  C  V  L  M  F  L  F  V  L  D  E  K  F  V  A  R  F  *  *  V  R  N  E  L  G  A  C  S  I  S  *  I  I  A  R  I  R  F  V  C  Y  I  S  F  V  K  S  L  R  S  P  S  F  G  V  V  S  C  G  T  I  T  R  N  T  S  I  R  G  S  C  C  L  *  *  *  I  W  W  G  L  F  C  C  L  Q  T  S  Q  *  A  A  L  I  T  L  *  Q  D  I  I  G  D  Q  C  G  L  *  K  P  V  V  P  H  E  C  F  V  R  K  P  W  R  F  P  L  N  S  I  L  *  F  V  E  T  I  S  :  K  I  K  H  I  D  </second_frame>
            <third_frame>   G  C  S  S  C  S  R  G  S  V  K  F  A  E  F  *  I  L  S  A  A  D  G  *  G  F  S  C  *  S  W  E  L  L  T  N  D  S  R  A  S  Q  F  A  S  F  S  I  R  S  S  T  A  L  F  R  E  K  R  R  R  R  T  L  K  I  *  L  L  L  L  L  L  L  S  L  L  L  L  I  Y  R  I  N  V  F  *  C  S  C  L  C  *  M  R  N  L  L  L  G  S  S  E  *  E  M  N  *  G  L  V  Q  F  H  E  L  L  L  G  L  G  L  F  A  I  S  H  L  S  R  V  Y  V  H  R  V  L  V  L  *  A  V  G  R  *  H  E  T  Q  A  S  G  E  V  V  A  C  D  D  E  F  G  G  V  C  S  V  V  C  R  P  H  N  K  L  L  *  S  H  C  N  K  I  *  *  G  I  S  V  D  Y  E  N  L  *  F  H  M  N  V  L  *  G  N  H  G  G  F  R  *  I  Q  F  C  N  L  L  K  L  Y  Q :   R  *  S  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116613" stop="116846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLYLICQEFTFTEFWCCKLWDDNTKHKHQGKLLLVMMNLVGFVLLFADLTISCFDHIVTRYNRGSVWTMKTCSST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116250" stop="116444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAAAAAAAALSSQSSRFFQQQMGEASAARVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="120652" PGL_stop="123125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120652" e_stop="120867"/>
            <exon e_start="121436" e_stop="121538"/>
            <exon e_start="122282" e_stop="122353"/>
            <exon e_start="122701" e_stop="122906"/>
            <exon e_start="123020" e_stop="123125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="120652" e_stop="120867" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="120868" i_stop="121435" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121436" e_stop="121538" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.971">
            <gDNA_intron_boundary i_start="121539" i_stop="122281" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122282" e_stop="122353" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="122354" i_stop="122700" i_length="347"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="122701" e_stop="122906" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122907" i_stop="123019" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="123020" e_stop="123125" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120652" stop="120867"/>
              <exon start="121436" stop="121538"/>
              <exon start="122282" stop="122353"/>
              <exon start="122701" stop="122906"/>
              <exon start="123020" stop="123125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120705" stop="120867"/>
              <exon start="121436" stop="121538"/>
              <exon start="122282" stop="122353"/>
              <exon start="122701" stop="122748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120821" stop="120867"/>
              <exon start="121436" stop="121538"/>
              <exon start="122282" stop="122353"/>
              <exon start="122701" stop="122765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</gDNA_template>
            <first_frame> *  D  F  R  T  *  K  N  N  N  F  Q  K  L  I  P  N  S  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F   : A  F  C  F  *  *  N  I  Y  A  T  S  I  P  L  Q  Q  H  L  W  I  C  R  S   : G  C  S  R  *  *  K  Q  C  L  V  L  H  T  Y  I  Q  D  F  V  Q  G  W  W  L  W  D  F  R  A  I  I  F  Q  L  N  R  L  C  E  T  S  S  A  T  V  W  G  T  A  T  G  R  P  S  P  S  C  T  N  S  S  *  *  D  D  *  T  C  :  L  C  R  S  Q  *  S  N  E  N  L  L  A  A  A  Y  S  R  V  A  T  *  A  S  F  I  P  I  T  T  C  L  K  L  N  </first_frame>
            <second_frame>  K  I  L  E  R  R  K  T  T  I  F  K  S  *  S  Q  I  P  K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  :  L  F  V  S  D  E  I  F  T  Q  P  V  F  H  C  N  N  I  S  G  F  V  D  P  :  V  V  P  D  N  E  N  S  A  L  Y  S  T  H  T  F  K  I  L  F  K  D  G  G  C  G  T  F  V  P  L  F  F  N  L  I  A  S  V  R  R  A  Q  Q  Q  S  G  V  Q  P  R  A  D  P  L  Q  A  A  Q  T  P  V  D  E  M  I  R  H  A :   Y  V  D  P  N  D  P  T  K  I  F  L  Q  Q  P  T  P  E  S  Q  L  R  R  R  S  Y  Q  S  Q  P  A  *  N  S  I </second_frame>
            <third_frame>   R  F  *  N  V  E  K  Q  Q  F  S  K  A  N  P  K  F  Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  C :   F  L  F  L  M  K  Y  L  R  N  Q  Y  S  T  A  T  T  S  L  D  L  *  I  R :   L  F  Q  I  M  K  T  V  P  C  T  P  H  I  H  S  R  F  C  S  R  M  V  V  V  G  L  S  C  H  Y  F  S  T  *  S  P  L  *  D  E  L  S  N  S  L  G  Y  S  H  G  Q  T  L  S  K  L  H  K  L  Q  L  M  R  *  L  D  M   : L  M  S  I  P  M  I  Q  R  K  S  S  C  S  S  L  L  Q  S  R  N  L  G  V  V  H  T  N  H  N  L  L  K  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120695" stop="120867"/>
                    <exon start="121436" stop="121538"/>
                    <exon start="122282" stop="122353"/>
                    <exon start="122701" stop="122906"/>
                    <exon start="123020" stop="123116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIPKIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLLFVSDEIFTQPVFHCNNISGFVDPVVPDNENSALYSTHTFKILFKDGGCGTFVPLFFNLIASVRRAQQQSGVQPRADPLQAAQTPVDEMIRHAYVDPNDPTKIFLQQPTPESQLRRRSYQSQPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121418" e_stop="122293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="121418" e_stop="122293" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121418" stop="122293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121419" stop="121972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</gDNA_template>
            <first_frame> E  T  V  C  Y  Q  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F  G  M  L  Y  F  Y  V  F  L  P  S  S  D  F  A  N  T  T  C  *  P  T  L  F  T  H  D  W  Y  S  F  S  V  D  Q  R  R  K  S  R  K  L  S  F  V  T  L  T  I  I  L  T  S  Y  Y  G  A  P  S  V  S  A  V  T  R  P  T  Y  A  *  C  A  I  Q  N  G  D  S  K  Y  N  D  *  R  Y  F  F  C  C  F  F  L  R  L  N  K  T  L  C  M  I  C  F  *  I  L  *  F  C  S  L  F  E  I  H  F  R  K  S  Y  F  T  M  C  N  S  E  W  R  V  V  E  Q  I  Y  H  F  G  Q  I  R  S  F  S  Y  E  T  V  L  F  V  S  K  A  L  T  C  *  L  N  G  I  M  T  *  F  I  S  D  L  Y  I  K  H  N  I  A  R  Y  N  I  C  *  E  A  C  Y  G  I  Y  C  S  D  I  C  *  D  A  *  H  E  F  V  F  I  C  S  M  F  L  F  R  E  I  I  W  *  V  G  D  F  A  E  Q  E  V  T  K  L  R  N  V  S  Y  I  C  F  D  K  V  Y  L  P  F  F  I  L  Q  L  F  V  S </first_frame>
            <second_frame>  R  L  F  V  I  S  V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  V  C  Y  T  S  M  S  F  Y  R  P  P  I  L  Q  T  P  H  A  N  Q  L  Y  S  L  M  T  G  I  V  F  L  W  I  R  E  E  N  R  E  N  S  L  L  L  L  L  L  L  Y  *  Q  V  T  M  A  L  L  Q  Y  L  L  *  L  D  Q  H  M  H  N  V  Q  F  R  M  A  I  P  S  I  T  I  S  D  I  S  F  V  A  S  F  *  G  *  T  K  L  C  V  *  Y  A  S  E  S  C  S  F  V  L  S  L  K  Y  I  L  E  S  R  I  L  L  C  A  I  Q  N  G  A  *  *  S  R  Y  I  T  L  V  K  Y  D  P  S  P  M  K  L  Y  C  L  F  L  K  L  *  H  V  N  *  M  V  L  *  H  D  L  Y  L  I  C  I  L  S  T  T  L  L  D  T  T  S  A  R  K  H  V  M  A  Y  I  V  R  I  F  V  K  M  H  D  M  N  S  C  S  S  V  L  C  F  C  S  E  K  *  S  G  K  L  V  T  L  L  S  K  K  L  Q  N  *  E  M  *  A  T  F  A  L  T  K  F  I  Y  L  F  S  F  C  S  F  L  F   </second_frame>
            <third_frame>   D  C  L  L  S  V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  W  Y  V  I  L  L  C  L  F  T  V  L  R  F  C  K  H  H  M  L  T  N  S  I  H  S  *  L  V  *  F  F  C  G  S  E  K  K  I  A  K  T  L  F  C  Y  S  Y  Y  Y  I  N  K  L  L  W  R  S  F  S  I  C  C  N  *  T  N  I  C  I  M  C  N  S  E  W  R  F  Q  V  *  R  L  A  I  F  L  L  L  L  L  F  E  A  E  Q  N  F  V  Y  D  M  L  L  N  P  V  V  L  F  S  L  *  N  T  F  *  K  V  V  F  Y  Y  V  Q  F  R  M  A  R  S  R  A  D  I  S  L  W  S  N  T  I  L  L  L  *  N  C  T  V  C  F  *  S  F  D  M  L  I  E  W  Y  Y  D  M  I  Y  I  *  F  V  Y  *  A  Q  H  C  *  I  Q  H  L  L  G  S  M  L  W  H  I  L  F  G  Y  L  L  R  C  M  T  *  I  R  V  H  L  F  Y  V  F  V  Q  R  N  N  L  V  S  W  *  L  C  *  A  R  S  Y  K  T  E  K  C  K  L  H  L  L  *  Q  S  L  F  T  F  F  H  S  A  A  F  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121419" stop="121691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLFVISVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLVCYTSMSFYRPPILQTPHANQLYSLMTGIVFLWIREENRENSLLLLLLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="127289" PGL_stop="123186"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127280" e_stop="127002"/>
            <exon e_start="125635" e_stop="125462"/>
            <exon e_start="124689" e_stop="123428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127280" e_stop="127002" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125635" e_stop="125462" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="124689" e_stop="123428" e_length="1262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127280" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127269" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127248" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127246" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127244" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127233" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="123428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127228" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127222" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127220" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127217" stop="127046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127203" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127091" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127054" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127050" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127028" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125580" stop="125462"/>
              <exon start="124689" stop="124269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125514" stop="125462"/>
              <exon start="124689" stop="124083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125504" stop="125462"/>
              <exon start="124689" stop="124126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124647" stop="124107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124620" stop="123725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124613" stop="123774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124608" stop="124325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124607" stop="123826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124474" stop="123598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124430" stop="124009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124229" stop="123679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124096" stop="123550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123985" stop="123469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123890" stop="123502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</gDNA_template>
            <first_frame> K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I  L  F  I  Q  K  H  A  A  L  F  Y  L  L  Y  L  K  H  F  L  V  T  *  V  H  L  Y  Y  I  L  T  R  G  V  L  E   </first_frame>
            <second_frame>  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T  Y  C  L  F  R  N  M  L  H  Y  F  T  S  C  I  *  S  I  F  W  S  L  E  Y  I  C  T  I  Y  *  Q  E  E  S  W  S  </second_frame>
            <third_frame>   N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  I  V  Y  S  E  T  C  C  I  I  L  P  P  V  F  K  A  F  F  G  H  L  S  T  S  V  L  Y  I  N  K  R  S  L  G  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127280" stop="127002"/>
                    <exon start="125635" stop="125462"/>
                    <exon start="124689" stop="123622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127280" e_stop="127002"/>
            <exon e_start="125635" e_stop="125462"/>
            <exon e_start="124689" e_stop="123503"/>
            <exon e_start="123203" e_stop="123186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.926" e_score="0.995"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127280" e_stop="127002" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125635" e_stop="125462" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="124689" e_stop="123503" e_length="1187"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="123502" i_stop="123204" i_length="299"/>
          </intron>
          <exon e_serial="4" e_score="0.556">
            <gDNA_exon_boundary e_start="123203" e_stop="123186" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127280" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127269" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127248" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127246" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127244" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127228" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127222" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127220" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127217" stop="127046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127203" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127091" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127054" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127050" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127028" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125580" stop="125462"/>
              <exon start="124689" stop="124269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125514" stop="125462"/>
              <exon start="124689" stop="124083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125504" stop="125462"/>
              <exon start="124689" stop="124126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124647" stop="124107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124620" stop="123725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124613" stop="123774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124608" stop="124325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124607" stop="123826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124474" stop="123598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124430" stop="124009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124229" stop="123679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124096" stop="123550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123794" stop="123503"/>
              <exon start="123203" stop="123186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTA : AATCAAAGCAATCACCAA</gDNA_template>
            <first_frame> K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I  L  F  I  Q  K  H  A  A  L  F  * :   I  K  A  I  T   </first_frame>
            <second_frame>  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T  Y  C  L  F  R  N  M  L  H  Y  F   : K  S  K  Q  S  P  </second_frame>
            <third_frame>   N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  I  V  Y  S  E  T  C  C  I  I  L  :  N  Q  S  N  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127280" stop="127002"/>
                    <exon start="125635" stop="125462"/>
                    <exon start="124689" stop="123622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="127289" e_stop="127002"/>
            <exon e_start="125635" e_stop="125462"/>
            <exon e_start="124689" e_stop="123536"/>
            <exon e_start="123379" e_stop="123359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.316" e_score="0.999"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127289" e_stop="127002" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127001" i_stop="125636" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125635" e_stop="125462" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125461" i_stop="124690" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="124689" e_stop="123536" e_length="1154"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.316">
            <gDNA_intron_boundary i_start="123535" i_stop="123380" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="123379" e_stop="123359" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127289" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="123536"/>
              <exon start="123379" stop="123359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127280" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127269" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127248" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127246" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127244" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127230" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127228" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127222" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127220" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127217" stop="127046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127203" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127091" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127054" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127050" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127028" stop="127002"/>
              <exon start="125635" stop="125462"/>
              <exon start="124689" stop="124461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125580" stop="125462"/>
              <exon start="124689" stop="124269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125514" stop="125462"/>
              <exon start="124689" stop="124083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125504" stop="125462"/>
              <exon start="124689" stop="124126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124647" stop="124107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124620" stop="123725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124613" stop="123774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124608" stop="124325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124607" stop="123826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124474" stop="123598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124430" stop="124009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124229" stop="123679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124096" stop="123550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACAT : AAAACTGGAAATAATCACTAA</gDNA_template>
            <first_frame> H  K  K  K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I :   K  L  E  I  I  T   </first_frame>
            <second_frame>  T  K  K  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T   : *  N  W  K  *  S  L  </second_frame>
            <third_frame>   Q  K  K  N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  :  K  T  G  N  N  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127289" stop="127002"/>
                    <exon start="125635" stop="125462"/>
                    <exon start="124689" stop="123622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKKKIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="123538" PGL_stop="124324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123538" e_stop="124324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="123538" e_stop="124324" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123538" stop="124324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAGAATTACAGCGGCTATTTCTCCTTTGTGCTCC</gDNA_template>
            <first_frame> V  T  K  S  P  F  I  Q  Q  N  K  N  L  K  R  K  I  S  P  S  S  I  Q  K  E  I  *  W  L  N  L  L  Q  N  F  F  S  C  S  Y  S  P  L  N  I  L  W  S  V  C  *  A  S  K  S  S  L  K  L  *  W  C  K  V  N  T  F  L  Q  H  P  S  I  E  S  A  K  F  F  C  I  T  L  L  C  I  R  K  V  I  D  G  T  I  R  E  E  E  A  K  H  P  P  Y  G  A  T  T  H  C  M  T  G  L  L  S  S  I  Q  D  S  L  C  K  F  R  G  D  L  V  Q  V  F  V  C  S  L  S  L  *  P  L  K  R  V  N  S  S  S  H  G  Q  W  V  S  T  *  G  A  S  L  I  H  W  S  C  R  C  Y  H  L  H  Y  I  P  S  S  S  V  S  T  Y  W  Q  A  T  A  N  N  L  P  E  C  C  Q  I  W  S  Y  S  K  I  L  L  S  T  A  I  C  Q  S  K  S  S  H  D  F  V  E  N  K  K  C  I  I  L  F  G  D  L  A  N  G  S  K  K  F  *  L  R  W  D  E  A  S  I  S  D  Y  R  L  E  N  Y  S  G  Y  F  S  F  V  L  </first_frame>
            <second_frame>  L  Q  N  H  L  L  F  N  R  T  K  T  *  K  G  K  S  L  H  L  A  Y  K  K  K  Y  S  G  *  I  C  F  K  T  F  S  A  A  A  T  V  L  *  I  S  S  G  V  C  A  K  L  V  N  P  A  S  N  C  D  G  A  K  *  T  P  S  S  S  I  P  L  *  N  L  P  N  F  S  V  S  L  F  F  A  S  E  K  L  *  M  G  P  S  A  K  K  K  P  N  I  P  L  M  E  P  P  H  I  A  *  P  V  F  F  P  A  S  K  I  P  C  V  S  S  A  V  I  L  S  K  C  S  Y  V  P  C  P  C  N  R  L  S  V  *  I  P  A  V  M  A  N  G  F  P  L  R  V  P  A  *  Y  I  G  P  A  G  A  T  I  S  I  I  S  R  L  P  P  *  A  P  T  G  K  P  P  P  I  I  F  P  S  V  V  K  S  G  V  I  P  K  Y  S  *  A  P  P  Y  A  N  L  N  P  V  M  T  S  S  K  I  R  S  A  S  F  S  L  V  I  L  R  M  A  A  R  N  S  S  L  G  G  M  K  P  A  F  P  T  T  G  S  R  I  T  A  A  I  S  P  L  C  S </second_frame>
            <third_frame>   Y  K  I  T  F  Y  S  T  E  Q  K  L  K  K  E  N  L  S  I  *  H  T  K  R  N  I  V  V  K  F  A  S  K  L  F  Q  L  Q  L  Q  S  F  E  Y  P  L  E  C  V  L  S  *  *  I  Q  P  Q  T  V  M  V  Q  S  K  H  L  P  P  A  S  L  Y  R  I  C  Q  I  F  L  Y  H  S  S  L  H  P  K  S  Y  R  W  D  H  P  R  R  R  S  Q  T  S  P  L  W  S  H  H  T  L  H  D  R  S  S  F  Q  H  P  R  F  L  V  *  V  P  R  *  S  C  P  S  V  R  M  F  P  V  L  V  T  A  *  A  C  E  F  Q  Q  S  W  P  M  G  F  H  L  G  C  Q  L  D  T  L  V  L  Q  V  L  P  S  P  L  Y  P  V  F  L  R  K  H  L  L  A  S  H  R  Q  *  S  S  R  V  L  S  N  L  E  L  F  Q  N  T  L  E  H  R  H  M  P  I  *  I  Q  S  *  L  R  R  K  *  E  V  H  H  S  L  W  *  S  C  E  W  Q  Q  E  I  L  A  *  V  G  *  S  Q  H  F  R  L  Q  A  R  E  L  Q  R  L  F  L  L  C  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124009" stop="124251"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GASLIHWSCRCYHLHYIPSSSVSTYWQATANNLPECCQIWSYSKILLSTAICQSKSSHDFVENKKCIILFGDLANGSKKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123718" stop="123957"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCKVNTFLQHPSIESAKFFCITLLCIRKVIDGTIREEEAKHPPYGATTHCMTGLLSSIQDSLCKFRGDLVQVFVCSLSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123699" stop="123908"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPQTVMVQSKHLPPASLYRICQIFLYHSSLHPKSYRWDHPRRRSQTSPLWSHHTLHDRSSFQHPRFLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="134581" PGL_stop="133876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134581" e_stop="133876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134581" e_stop="133876" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134581" stop="133876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCTTCTAACTTTCTTGCTGACATGGTTCATGAAGGATTTCTCCCTGATGTAGTTGGTTATTCGGCAGTCATAGACGGCCTTGTTAAGATTAAACAGTTGGATGATGCACTGAATCTTTTCAGAGGGATCTGTGCTCGGGGTTATTGCCCTGATGTGGTTGCTTATAACATTATGATAAATGGGCTTTGTAAGGCCAAAAGGGTACTTGACGCCCAGAATCTTCTTGATGAAATGATGGCTAAGGGACTTATTCCATCAGTTGTTACCTACAACTCACTGATTGATGGGTGGTGCAAAAATGGTGATGTAGATCGAGCAATTGCATATCTCACTAGGATGAATGTAAAAGAACGGGAGCCCAATGTTATCACTTACACCACTTTAATAGATGGGTTATGCAATGCCGGCAAACCAAGTGATGCTATTAGTCTTTTGGTCAATATGGAGGCAAATGGGTGCTCTCCAAATAGAATAACTTTTATGGCTCTCATTAGTGGTCTGTGCAAGTGTCGGAAGCCAGATGATGCTCTGATTTATCTGCAGGAAATGGAGAGGAAGGATATGAAACCCGATCCATCGATCTACATAGTGCTAATAGATGCCTTTATAAAAAATATGAATCCTAATGAAGCTTGTGAGCTACTACAAAAGGTGGTCCATGACGAGTCTCTTCTAGATTTAAATATTAAGAGTCGACCTATTC</gDNA_template>
            <first_frame> K  A  S  N  F  L  A  D  M  V  H  E  G  F  L  P  D  V  V  G  Y  S  A  V  I  D  G  L  V  K  I  K  Q  L  D  D  A  L  N  L  F  R  G  I  C  A  R  G  Y  C  P  D  V  V  A  Y  N  I  M  I  N  G  L  C  K  A  K  R  V  L  D  A  Q  N  L  L  D  E  M  M  A  K  G  L  I  P  S  V  V  T  Y  N  S  L  I  D  G  W  C  K  N  G  D  V  D  R  A  I  A  Y  L  T  R  M  N  V  K  E  R  E  P  N  V  I  T  Y  T  T  L  I  D  G  L  C  N  A  G  K  P  S  D  A  I  S  L  L  V  N  M  E  A  N  G  C  S  P  N  R  I  T  F  M  A  L  I  S  G  L  C  K  C  R  K  P  D  D  A  L  I  Y  L  Q  E  M  E  R  K  D  M  K  P  D  P  S  I  Y  I  V  L  I  D  A  F  I  K  N  M  N  P  N  E  A  C  E  L  L  Q  K  V  V  H  D  E  S  L  L  D  L  N  I  K  S  R  P  I  </first_frame>
            <second_frame>  K  L  L  T  F  L  L  T  W  F  M  K  D  F  S  L  M  *  L  V  I  R  Q  S  *  T  A  L  L  R  L  N  S  W  M  M  H  *  I  F  S  E  G  S  V  L  G  V  I  A  L  M  W  L  L  I  T  L  *  *  M  G  F  V  R  P  K  G  Y  L  T  P  R  I  F  L  M  K  *  W  L  R  D  L  F  H  Q  L  L  P  T  T  H  *  L  M  G  G  A  K  M  V  M  *  I  E  Q  L  H  I  S  L  G  *  M  *  K  N  G  S  P  M  L  S  L  T  P  L  *  *  M  G  Y  A  M  P  A  N  Q  V  M  L  L  V  F  W  S  I  W  R  Q  M  G  A  L  Q  I  E  *  L  L  W  L  S  L  V  V  C  A  S  V  G  S  Q  M  M  L  *  F  I  C  R  K  W  R  G  R  I  *  N  P  I  H  R  S  T  *  C  *  *  M  P  L  *  K  I  *  I  L  M  K  L  V  S  Y  Y  K  R  W  S  M  T  S  L  F  *  I  *  I  L  R  V  D  L  F </second_frame>
            <third_frame>   S  F  *  L  S  C  *  H  G  S  *  R  I  S  P  *  C  S  W  L  F  G  S  H  R  R  P  C  *  D  *  T  V  G  *  C  T  E  S  F  Q  R  D  L  C  S  G  L  L  P  *  C  G  C  L  *  H  Y  D  K  W  A  L  *  G  Q  K  G  T  *  R  P  E  S  S  *  *  N  D  G  *  G  T  Y  S  I  S  C  Y  L  Q  L  T  D  *  W  V  V  Q  K  W  *  C  R  S  S  N  C  I  S  H  *  D  E  C  K  R  T  G  A  Q  C  Y  H  L  H  H  F  N  R  W  V  M  Q  C  R  Q  T  K  *  C  Y  *  S  F  G  Q  Y  G  G  K  W  V  L  S  K  *  N  N  F  Y  G  S  H  *  W  S  V  Q  V  S  E  A  R  *  C  S  D  L  S  A  G  N  G  E  E  G  Y  E  T  R  S  I  D  L  H  S  A  N  R  C  L  Y  K  K  Y  E  S  *  *  S  L  *  A  T  T  K  G  G  P  *  R  V  S  S  R  F  K  Y  *  E  S  T  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134581" stop="133877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASNFLADMVHEGFLPDVVGYSAVIDGLVKIKQLDDALNLFRGICARGYCPDVVAYNIMINGLCKAKRVLDAQNLLDEMMAKGLIPSVVTYNSLIDGWCKNGDVDRAIAYLTRMNVKEREPNVITYTTLIDGLCNAGKPSDAISLLVNMEANGCSPNRITFMALISGLCKCRKPDDALIYLQEMERKDMKPDPSIYIVLIDAFIKNMNPNEACELLQKVVHDESLLDLNIKSRPI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="136322" PGL_stop="137194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136322" e_stop="136344"/>
            <exon e_start="136864" e_stop="137194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.000" e_score="0.435"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.435">
            <gDNA_exon_boundary e_start="136322" e_stop="136344" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136345" i_stop="136863" i_length="519"/>
          </intron>
          <exon e_serial="2" e_score="0.906">
            <gDNA_exon_boundary e_start="136864" e_stop="137194" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136322" stop="136344"/>
              <exon start="136864" stop="137194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220022" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTGTTTTTGGGGAAGACTG : ATTTTTATTTTTTCTCAATCAAGATTTATCCAAGAAGCTCATCATAATTATACTTGACCAAACTTTTACATTTCAATTTATAAATTGTTCTATAACTTCTTCCAGCTTCATCATAAAGTACAACATGTTCCAGCAACCAAGTAACTTAGTATCTGTACTTGGTAGAGTAATCTTTTGGTGCTATGACTAGACCCCGGCCTTTTCTGGCACCGCGATACACAGTCTCAACAATGTCGATGAACTCCTGTTTATCCTTAAGCGCCCAGTTGATCTTGTTATTGTTCCCGGTGCCAAGATCAATCATAATGTGCTTGTTCCTGAAGAAGAACAT</gDNA_template>
            <first_frame> *  C  V  F  G  E  D  * :   F  L  F  F  L  N  Q  D  L  S  K  K  L  I  I  I  I  L  D  Q  T  F  T  F  Q  F  I  N  C  S  I  T  S  S  S  F  I  I  K  Y  N  M  F  Q  Q  P  S  N  L  V  S  V  L  G  R  V  I  F  W  C  Y  D  *  T  P  A  F  S  G  T  A  I  H  S  L  N  N  V  D  E  L  L  F  I  L  K  R  P  V  D  L  V  I  V  P  G  A  K  I  N  H  N  V  L  V  P  E  E  E  H </first_frame>
            <second_frame>  D  V  F  L  G  K  T   : D  F  Y  F  F  S  I  K  I  Y  P  R  S  S  S  *  L  Y  L  T  K  L  L  H  F  N  L  *  I  V  L  *  L  L  P  A  S  S  *  S  T  T  C  S  S  N  Q  V  T  *  Y  L  Y  L  V  E  *  S  F  G  A  M  T  R  P  R  P  F  L  A  P  R  Y  T  V  S  T  M  S  M  N  S  C  L  S  L  S  A  Q  L  I  L  L  L  F  P  V  P  R  S  I  I  M  C  L  F  L  K  K  N   </second_frame>
            <third_frame>   M  C  F  W  G  R  L  :  I  F  I  F  S  Q  S  R  F  I  Q  E  A  H  H  N  Y  T  *  P  N  F  Y  I  S  I  Y  K  L  F  Y  N  F  F  Q  L  H  H  K  V  Q  H  V  P  A  T  K  *  L  S  I  C  T  W  *  S  N  L  L  V  L  *  L  D  P  G  L  F  W  H  R  D  T  Q  S  Q  Q  C  R  *  T  P  V  Y  P  *  A  P  S  *  S  C  Y  C  S  R  C  Q  D  Q  S  *  C  A  C  S  *  R  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0127L14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="139767" PGL_stop="136659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139767" e_stop="139567"/>
            <exon e_start="137317" e_stop="136809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139767" e_stop="139567" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137317" e_stop="136809" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139767" stop="139567"/>
              <exon start="137317" stop="136809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139758" stop="139567"/>
              <exon start="137317" stop="136886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139676" stop="139567"/>
              <exon start="137317" stop="136824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGTAAGCTTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG : ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAATGTAAAGCTGATTCTTAATGTTCTTAGATTAAAATCATGATTTGAAGTTAAAATTT</gDNA_template>
            <first_frame> S  V  S  F  F  S  V  S  F  F  F  I  F  S  A  *  K  D  R  N  Q  L  L  F  E  R  E  M  S  Y  L  L  P  H  L  H  S  G  W  A  V  D  Q  A  I  L  A  E  E  E  R  L  V  L  I  R  F  G  H  D  W  D  D  T  C  M  Q  :  M  D  E  V  L  S  S  V  A  E  T  I  K  N  F  A  V  I  Y  L  V  D  I  T  E  V  P  D  F  N  T  M  Y  E  L  Y  D  P  S  T  I  M  F  F  F  R  N  K  H  I  M  I  D  L  G  T  G  N  N  N  K  I  N  W  A  L  K  D  K  Q  E  F  I  D  I  V  E  T  V  Y  R  G  A  R  K  G  R  G  L  V  I  A  P  K  D  Y  S  T  K  Y  R  Y  *  V  T  W  L  L  E  H  V  V  L  Y  D  E  A  G  R  S  Y  R  T  I  Y  K  L  K  C  K  S  L  V  K  Y  N  Y  D  E  L  L  G  *  I  L  I  E  K  K  *  K  C  K  A  D  S  *  C  S  *  I  K  I  M  I  *  S  *  N   </first_frame>
            <second_frame>  L  *  A  S  S  L  F  L  F  S  S  F  F  L  H  K  K  I  E  I  S  Y  Y  L  R  E  R  C  R  I  C  Y  H  I  F  T  L  D  G  L  W  I  K  L  S  L  R  K  K  N  A  L  Y  L  F  D  L  A  M  I  G  M  I  L  V  C  R :   W  M  R  C  C  L  Q  L  R  R  R  S  R  T  L  L  *  F  T  W  L  T  S  P  R  F  L  I  L  T  R  C  T  S  C  M  I  H  P  P  S  C  S  S  S  G  T  S  T  L  *  L  I  L  A  P  G  T  I  T  R  S  T  G  R  L  R  I  N  R  S  S  S  T  L  L  R  L  C  I  A  V  P  E  K  A  G  V  *  S  *  H  Q  K  I  T  L  P  S  T  D  T  K  L  L  G  C  W  N  M  L  Y  F  M  M  K  L  E  E  V  I  E  Q  F  I  N  *  N  V  K  V  W  S  S  I  I  M  M  S  F  L  D  K  S  *  L  R  K  N  K  N  V  K  L  I  L  N  V  L  R  L  K  S  *  F  E  V  K  I  </second_frame>
            <third_frame>   C  K  L  L  L  C  F  F  F  L  H  F  F  C  I  K  R  S  K  S  A  T  I  *  E  R  D  V  V  F  V  T  T  S  S  L  W  M  G  C  G  S  S  Y  P  C  G  R  R  T  P  C  T  Y  S  I  W  P  *  L  G  *  Y  L  Y  A   : D  G  *  G  V  V  F  S  C  G  D  D  Q  E  L  C  C  D  L  P  G  *  H  H  R  G  S  *  F  *  H  D  V  R  A  V  *  S  I  H  H  H  V  L  L  Q  E  Q  A  H  Y  D  *  S  W  H  R  E  Q  *  Q  D  Q  L  G  A  *  G  *  T  G  V  H  R  H  C  *  D  C  V  S  R  C  Q  K  R  P  G  S  S  H  S  T  K  R  L  L  Y  Q  V  Q  I  L  S  Y  L  V  A  G  T  C  C  T  L  *  *  S  W  K  K  L  *  N  N  L  *  I  E  M  *  K  F  G  Q  V  *  L  *  *  A  S  W  I  N  L  D  *  E  K  I  K  M  *  S  *  F  L  M  F  L  D  *  N  H  D  L  K  L  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139719" stop="139567"/>
                    <exon start="137317" stop="137009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRNQLLFEREMSYLLPHLHSGWAVDQAILAEEERLVLIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTIMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="139758" e_stop="139567"/>
            <exon e_start="137317" e_stop="136864"/>
            <exon e_start="136681" e_stop="136659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.048" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.391"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139758" e_stop="139567" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="139566" i_stop="137318" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137317" e_stop="136864" e_length="454"/>
          </exon>
          <intron i_serial="2" don_prob="0.048" acc_prob="0.872">
            <gDNA_intron_boundary i_start="136863" i_stop="136682" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.391">
            <gDNA_exon_boundary e_start="136681" e_stop="136659" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139758" stop="139567"/>
              <exon start="137317" stop="136886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137243" stop="136864"/>
              <exon start="136681" stop="136659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTCTCTGTTTCTTTTTTCTTCATTTTTTCTGCATAAAAAGATCGAAATCAGCTACTATTTGAGAGAGAGATGTCGTATTTGTTACCACATCTTCACTCTGGATGGGCTGTGGATCAAGCTATCCTTGCGGAAGAAGAACGCCTTGTACTTATTCGATTTGGCCATGATTGGGATGATACTTGTATGCAG : ATGGATGAGGTGTTGTCTTCAGTTGCGGAGACGATCAAGAACTTTGCTGTGATTTACCTGGTTGACATCACCGAGGTTCCTGATTTTAACACGATGTACGAGCTGTATGATCCATCCACCATCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACCGGGAACAATAACAAGATCAACTGGGCGCTTAAGGATAAACAGGAGTTCATCGACATTGTTGAGACTGTGTATCGCGGTGCCAGAAAAGGCCGGGGTCTAGTCATAGCACCAAAAGATTACTCTACCAAGTACAGATACTAAGTTACTTGGTTGCTGGAACATGTTGTACTTTATGATGAAGCTGGAAGAAGTTATAGAACAATTTATAAATTGAAATGTAAAAGTTTGGTCAAGTATAATTATGATGAGCTTCTTGGATAAATCTTGATTGAGAAAAAATAAAAAT : TCATAATGTAGAAGACCATTCTA</gDNA_template>
            <first_frame> F  F  S  V  S  F  F  F  I  F  S  A  *  K  D  R  N  Q  L  L  F  E  R  E  M  S  Y  L  L  P  H  L  H  S  G  W  A  V  D  Q  A  I  L  A  E  E  E  R  L  V  L  I  R  F  G  H  D  W  D  D  T  C  M  Q  :  M  D  E  V  L  S  S  V  A  E  T  I  K  N  F  A  V  I  Y  L  V  D  I  T  E  V  P  D  F  N  T  M  Y  E  L  Y  D  P  S  T  I  M  F  F  F  R  N  K  H  I  M  I  D  L  G  T  G  N  N  N  K  I  N  W  A  L  K  D  K  Q  E  F  I  D  I  V  E  T  V  Y  R  G  A  R  K  G  R  G  L  V  I  A  P  K  D  Y  S  T  K  Y  R  Y  *  V  T  W  L  L  E  H  V  V  L  Y  D  E  A  G  R  S  Y  R  T  I  Y  K  L  K  C  K  S  L  V  K  Y  N  Y  D  E  L  L  G  *  I  L  I  E  K  K  *  K   : F  I  M  *  K  T  I  L </first_frame>
            <second_frame>  S  S  L  F  L  F  S  S  F  F  L  H  K  K  I  E  I  S  Y  Y  L  R  E  R  C  R  I  C  Y  H  I  F  T  L  D  G  L  W  I  K  L  S  L  R  K  K  N  A  L  Y  L  F  D  L  A  M  I  G  M  I  L  V  C  R :   W  M  R  C  C  L  Q  L  R  R  R  S  R  T  L  L  *  F  T  W  L  T  S  P  R  F  L  I  L  T  R  C  T  S  C  M  I  H  P  P  S  C  S  S  S  G  T  S  T  L  *  L  I  L  A  P  G  T  I  T  R  S  T  G  R  L  R  I  N  R  S  S  S  T  L  L  R  L  C  I  A  V  P  E  K  A  G  V  *  S  *  H  Q  K  I  T  L  P  S  T  D  T  K  L  L  G  C  W  N  M  L  Y  F  M  M  K  L  E  E  V  I  E  Q  F  I  N  *  N  V  K  V  W  S  S  I  I  M  M  S  F  L  D  K  S  *  L  R  K  N  K  N  :  S  *  C  R  R  P  F   </second_frame>
            <third_frame>   L  L  C  F  F  F  L  H  F  F  C  I  K  R  S  K  S  A  T  I  *  E  R  D  V  V  F  V  T  T  S  S  L  W  M  G  C  G  S  S  Y  P  C  G  R  R  T  P  C  T  Y  S  I  W  P  *  L  G  *  Y  L  Y  A   : D  G  *  G  V  V  F  S  C  G  D  D  Q  E  L  C  C  D  L  P  G  *  H  H  R  G  S  *  F  *  H  D  V  R  A  V  *  S  I  H  H  H  V  L  L  Q  E  Q  A  H  Y  D  *  S  W  H  R  E  Q  *  Q  D  Q  L  G  A  *  G  *  T  G  V  H  R  H  C  *  D  C  V  S  R  C  Q  K  R  P  G  S  S  H  S  T  K  R  L  L  Y  Q  V  Q  I  L  S  Y  L  V  A  G  T  C  C  T  L  *  *  S  W  K  K  L  *  N  N  L  *  I  E  M  *  K  F  G  Q  V  *  L  *  *  A  S  W  I  N  L  D  *  E  K  I  K  I :   H  N  V  E  D  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139719" stop="139567"/>
                    <exon start="137317" stop="137009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRNQLLFEREMSYLLPHLHSGWAVDQAILAEEERLVLIRFGHDWDDTCMQMDEVLSSVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTIMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="142824" PGL_stop="143294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142824" e_stop="143294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="142824" e_stop="143294" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142824" stop="143219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142826" stop="143294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGTTATCAACCTTGACCACTTTATCTTCTGGAAAAATACCAAAGTAGAGAAAACACTGCTTGAGCGCAGTTGACAAATCATTGTAGCTTAATGATAGTATGTTGGAGATTTCAATAAATTTATCTTCTTTAATGTTCTTCCAAAGGTGATCTTTCACCTTTTTCCATTCGTTTAGCCCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATCGCAAGAGGTAAGCCTCTACACTTTTCCACCATATCCTCAGCTAGACTTTCCATTTCTGGAACCATTGCTCGAACATCAAGTAGTTTCCTGCAAAAGAGATCCCAACTTTCTTCTTGGCTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGTCTGCTCTTTCAGCAACATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCCTTCTCGCCATCCGGGAATGCTCTTTTCAAACTTTCCCATGCTTCTC</gDNA_template>
            <first_frame> L  C  Y  Q  P  *  P  L  Y  L  L  E  K  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  M  I  V  C  W  R  F  Q  *  I  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  S  I  R  L  A  P  F  Y  A  K  V  V  R  S  I  Q  Q  S  Q  E  V  S  L  Y  T  F  P  P  Y  P  Q  L  D  F  P  F  L  E  P  L  L  E  H  Q  V  V  S  C  K  R  D  P  N  F  L  L  G  L  G  N  E  V  Y  E  Q  N  L  C  R  L  L  F  Q  Q  H  P  L  C  A  W  *  *  *  L  C  C  P  S  R  H  P  G  M  L  F  S  N  F  P  M  L  L </first_frame>
            <second_frame>  Y  V  I  N  L  D  H  F  I  F  W  K  N  T  K  V  E  K  T  L  L  E  R  S  *  Q  I  I  V  A  *  *  *  Y  V  G  D  F  N  K  F  I  F  F  N  V  L  P  K  V  I  F  H  L  F  P  F  V  *  P  L  F  M  R  K  *  S  A  Q  Y  N  N  R  K  R  *  A  S  T  L  F  H  H  I  L  S  *  T  F  H  F  W  N  H  C  S  N  I  K  *  F  P  A  K  E  I  P  T  F  F  L  A  *  E  T  K  F  M  N  K  T  S  V  V  C  S  F  S  N  I  L  F  A  R  G  N  N  D  S  A  A  L  L  A  I  R  E  C  S  F  Q  T  F  P  C  F   </second_frame>
            <third_frame>   M  L  S  T  L  T  T  L  S  S  G  K  I  P  K  *  R  K  H  C  L  S  A  V  D  K  S  L  *  L  N  D  S  M  L  E  I  S  I  N  L  S  S  L  M  F  F  Q  R  *  S  F  T  F  F  H  S  F  S  P  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  S  A  R  L  S  I  S  G  T  I  A  R  T  S  S  S  F  L  Q  K  R  S  Q  L  S  S  W  L  R  K  R  S  L  *  T  K  P  L  S  S  A  L  S  A  T  S  S  L  R  V  V  I  M  T  L  L  P  F  S  P  S  G  N  A  L  F  K  L  S  H  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142959" stop="143231"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSSKGDLSPFSIRLAPFYAKVVRSIQQSQEVSLYTFPPYPQLDFPFLEPLLEHQVVSCKRDPNFLLGLGNEVYEQNLCRLLFQQHPLCAW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0127L14.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142976" stop="143179"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFTFFHSFSPFLCESSPLNTTIARGKPLHFSTISSARLSISGTIARTSSSFLQKRSQLSSWLRKRSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 572 chains have been computed
$ 
$ memory statistics:
$ 5083096 bytes spliced alignments in total
$ 437 spliced alignments have been stored
$ 11631 bytes was the average size of a spliced alignment
$ 54048 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 2161 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 637 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:55:51
-->
