<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:38:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="6682" stop="7519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6982" g_stop="7219" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6982" e_stop="7219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTAGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="6683" stop="14793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6983" g_stop="7459" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6983" e_stop="7459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTAGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATTATAGTTGA-TTTATGATATTACTTGG--TATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGCACATCAAACGTGCCATCATCTTCGACTCAACAATAACTCTAGCCAGTCTTTATTACTCCGGATA-TCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTC-TTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="7116" stop="7916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7414" g_stop="7613" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7414" e_stop="7613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTATTGATGCCTTTAAGTTCCGGCATGGACTAGCT-TTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTA-TTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="7832" stop="8985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8132" g_stop="8685" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8132" e_stop="8685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCTCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCTGTTTCAGAGGTACAACATGCAGCCATTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCATGTCTGAATACTGGGTCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGCTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTAAGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGGACAGTTTGGTGTTGAGTTTGTGACATATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCATCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="8459" stop="10467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8759" g_stop="8945" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8946" i_stop="9689" i_length="744">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9690" g_stop="10153" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="651" r_length="464" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8759" e_stop="8945"/>
          <exon e_start="9690" e_stop="10153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCGTATGAGGCCAAGTTCCGTGCATTATCTCGGTATGCCACCCAACTATATTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTTCAGCGAAATCTTTTCAAGAAGTGTTAGACTTCGTGATAGAGGTAGAGGGAGTGAAGCCAAATGACTTCACCATGGCAACTACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTAAAAGACCTATGCTCGAATCTAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAGGAGAAATTGTCCGAAATAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGCCGTCATTCTGGAGGACGCGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGACAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAGGTGAGAGGGCCCATTGTTATGCTTTCCCTGGGCGTTCTGAAGCGGAAACATCGGATGCTGTTATCACAGGTAATCTTTTGATTTGTGATTGCATGGCTTCTTTATTATTTGATCCTGGCTCCACATTTTCATATGTATCATCCACATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTCTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGGTTATTTTGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCCTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTTCGTGAGTTCTTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCTCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCATGTGCATCTCCTTGGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="10486" stop="9125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10186" g_stop="9425" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10186" e_stop="9425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGAGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAAGAACTCACGAACTATCGAAACCGACTCAATTGGAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCAGGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCAAAATAACCCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCAGAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGTGGATGATACATATGAAAATGTGGA-GCCAGGATCAAATAATAAAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATCCGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="10083" stop="9153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9783" g_stop="9453" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9783" e_stop="9453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCAAAATAACCCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCAGAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGTGGATGATACATATGAAAATGTGGAGCCAGGATCAAATAATAAAGAAGCCATGCAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="+" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="9183" stop="10443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9483" g_stop="10143" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9483" e_stop="10143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGCTCCACATTTTCATATGTATCATCCACATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTCTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGGTTATTTTGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCCTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTTCGTGAGTTCTTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCTCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCATGTGCATCTCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="10486" stop="9226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10186" g_stop="9526" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10186" e_stop="9526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGAGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAAGAACTCACGAACTATCGAAACCGACTCAATTGGAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCAGGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCAAAATAACCCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCAGAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="10555" stop="9314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10255" g_stop="9597" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10255" e_stop="9597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTCTGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGAGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAAGAACTCACGAACTATCGAAACCGACTCAATTGGAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCAGGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCAAAATAACCCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGT-TACAAGACAAGACCTATACACCTTTTCAACTATCAG</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="11004" stop="9726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10704" g_stop="10025" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10704" e_stop="10025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTCCAGTACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAGTATATCATCAATAAATACGATCACAAAGAGATTCAAGTATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCTCGTATTTTCAATTGATGATAACCGGATATCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTCTGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGAGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="11075" stop="9763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10775" g_stop="10063" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10775" e_stop="10063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTCCAGTACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAGTATATCATCAATAAATACGATCACAAAGAGATTCAAGTATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCTCGTATTTTCAATTGATGATAACCGGATATCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTCTGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="11075" stop="9880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10775" g_stop="10180" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10775" e_stop="10180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTCCAGTACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAGTATATCATCAATAAATACGATCACAAAGAGATTCAAGTATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCTCGTATTTTCAATTGATGATAACCGGATATCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTCTGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0118H12-UR5Qg/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0118H12.1" temp_strand="-" temp_description="C04SLm0118H12.1  CU571307.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0118H12 sequenced_by:sanger upload_account_name:uk">
        <position start="11075" stop="9950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10775" g_stop="10250" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0118H12.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0118H12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10775" e_stop="10250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTCCAGTACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAGTATATCATCAATAAATACGATCACAAAGAGATTCAAGTATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCTCGTATTTTCAATTGATGATAACCGGATATCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6982" PGL_stop="7613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6982" e_stop="7613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="6982" e_stop="7613" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6982" stop="7219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6983" stop="7459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7414" stop="7613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCAGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGATACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTAGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATTATAGTTGATTTATGATATTACTTGGTATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTAACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGCACATCAAACGTGCCATCATCTTCGACTCAACAATAACTCTAGCCAGTCTTTATTACTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTATTGATGCCTTTAAGTTCCGGCATGGACTAGCTTTTATGTATTTTTAGCTTCTTAGAAACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  R  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  Y  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  L  *  Y  Y  L  V  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  N  P  Y  F  Y  V  F  F  L  F  I  C  G  A  H  Q  T  C  H  H  L  R  L  N  N  N  S  S  Q  S  L  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  Y  *  C  L  *  V  P  A  W  T  S  F  Y  V  F  L  A  S  *  K  L  L  D  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  I   </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  *  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  H  I  K  R  A  I  I  F  D  S  T  I  T  L  A  S  L  Y  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  I  D  A  F  K  F  R  H  G  L  A  F  M  Y  F  *  L  L  R  N  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  Q  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  I  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  R  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  Y  S  *  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  T  S  N  V  P  S  S  S  T  Q  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  L  S  S  G  M  D  *  L  L  C  I  F  S  F  L  E  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7241" stop="7525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYDITWYILFSILSWPMISTQYPCFVLTPTFMFSSCLFVEHIKRAIIFDSTITLASLYYSGYQGELMLLAWTGSSSSCIDAFKFRHGLAFMYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8132" PGL_stop="8685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8132" e_stop="8685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="8132" e_stop="8685" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8132" stop="8685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCTCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCATAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCCCCTCCAGTGTTTTCTGCACCAACACCTCCTGTTTCAGAGGTACAACATGCAGCCATTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCATGTCTGAATACTGGGTCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGCTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTAAGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGGACAGTTTGGTGTTGAGTTTGTGACATATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCATCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  L  I  *  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  I  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  P  S  S  V  F  C  T  N  T  S  C  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  M  S  E  Y  W  V  Y  N  D  K  *  S  A  *  T  F  Q  *  A  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  I  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  I  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  S  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  *  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  I  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  C  L  N  T  G  S  I  M  T  N  D  Q  H  E  L  F  S  K  L  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  *  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  G  Q  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  S  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  H  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  P  L  Q  C  F  L  H  Q  H  L  L  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  I  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  K  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  D  S  L  V  L  S  L  *  H  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8256" stop="8519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAAIMAPRMDASLDIGTFPCLNTGSIMTNDQHELFSKLLKLKPPVFKGAESEDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8759" PGL_stop="10153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8759" e_stop="8945"/>
            <exon e_start="9690" e_stop="10153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.856"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.856">
            <gDNA_exon_boundary e_start="8759" e_stop="8945" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8946" i_stop="9689" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="9690" e_stop="10153" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8759" stop="8945"/>
              <exon start="9690" stop="10153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCGTATGAGGCCAAGTTCCGTGCATTATCTCGGTATGCCACCCAACTATATTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCAGATTTCAGCCTTACAGGTAGCGGCTTCAGCGAAATCTTTTCAAGAAGTGTTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCCTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTTCGTGAGTTCTTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCTCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCATGTGCATCTCCTTGGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  V  *  G  Q  V  P  C  I  I  S  V  C  H  P  T  I  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  F  S  E  I  F  S  R  S  V  R  L   : R  C  N  S  G  Y  D  L  A  F  P  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  D  S  S  *  V  L  R  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  S  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  M  C  I  S  L  G  C  S  G </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  V  A  A  S  A  K  S  F  Q  E  V  L  D  F  :  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  R  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  P  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  C  A  S  P  W  G  A  P   </second_frame>
            <third_frame>   K  V  G  C  R  L  L  R  M  R  P  S  S  V  H  Y  L  G  M  P  P  N  Y  I  S  V  H  K  S  G  F  A  V  L  *  R  G  *  D  Q  S  C  R  F  Q  P  Y  R  *  R  L  Q  R  N  L  F  K  K  C  *  T  S :   M  *  F  W  V  *  L  G  F  P  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  L  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  F  V  S  S  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  L  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  H  V  H  L  L  G  V  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8760" stop="8945"/>
                    <exon start="9690" stop="10151"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFRALSRYATQLYFSPQERIRRFVKGLRSELQISALQVAASAKSFQEVLDFDVILGMTWLSPNFAILDCNAKTVTLAKPRTDPLVWEGDYTSNPVRIISFLPAKKMVSKGCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPCASPWGAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9483" e_stop="10143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="9483" e_stop="10143" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9483" stop="10143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGCTCCACATTTTCATATGTATCATCCACATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTCTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTAACTTTTGTGGGGAGCAATACTTATGTAGACTTGGTTATCTTAGAAATGGGTTATTTTGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTAGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCCTGCTAAGAAAATGGTTAGTAAGGGTTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCGATAGTTCGTGAGTTCTTAGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGCATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCTCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCATGTGCATCTCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  T  F  A  N  G  L  N  L  H  C  E  L  L  D  I  P  I  R  V  S  T  P  V  G  E  S  L  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  Y  V  D  L  V  I  L  E  M  G  Y  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  R  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  P  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  C  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  A  P  H  F  H  M  Y  H  P  H  L  L  M  V  L  I  Y  I  V  N  C  L  T  Y  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  V  I  L  M  *  F  W  V  *  L  G  F  P  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  L  L  R  K  W  L  V  R  V  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  F  V  S  S  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  A  L  I  L  N  R  V  L  A  P  F  L  Y  L  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  H  V  H  L  L  G </second_frame>
            <third_frame>   *  S  W  L  H  I  F  I  C  I  I  H  I  C  *  W  S  *  F  T  L  *  I  A  *  H  T  Y  S  C  F  Y  S  G  G  *  V  S  D  S  *  K  G  V  *  V  L  S  C  N  F  C  G  E  Q  Y  L  C  R  L  G  Y  L  R  N  G  L  F  *  C  N  S  G  Y  D  L  A  F  P  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  D  S  S  *  V  L  R  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  H  *  S  *  T  G  Y  S  P  H  F  Y  T  S  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  M  C  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9483" stop="10142"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSTFANGLNLHCELLDIPIRVSTPVGESLIVEKVYRSCLVTFVGSNTYVDLVILEMGYFDVILGMTWLSPNFAILDCNAKTVTLAKPRTDPLVWEGDYTSNPVRIISFLPAKKMVSKGCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPCASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="10775" PGL_stop="9425"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10775" e_stop="9425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="10775" e_stop="9425" e_length="1351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10775" stop="10063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10775" stop="10180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10775" stop="10250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10704" stop="10025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10255" stop="9597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10186" stop="9425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10186" stop="9526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9783" stop="9453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAACTCCTTATTTCTGACACATTAGTAGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTCCAGTACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAGTATATCATCAATAAATACGATCACAAAGAGATTCAAGTATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATCCGTTGCTCGTATTTTCAATTGATGATAACCGGATATCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTGATCGAACAAGTCATCAATGCGAGGAATGGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGTCTGTAGTCTCTGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCCAAGGAGATGCACATGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGAGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATGCAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCTAAGAACTCACGAACTATCGAAACCGACTCAATTGGAGGTACTTGGGTAGTATCATCCCTGAGATGTGCCAAGAACGCTAAACAACCCTTACTAACCATTTTCTTAGCAGGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCTAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCAAAATAACCCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCAGAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGTGGATGATACATATGAAAATGTGGAGCCAGGATCAAATAATAAAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATAACAGCATCCGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  T  P  Y  F  *  H  I  S  R  S  Y  Q  I  L  H  C  L  N  L  R  R  I  Y  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  E  L  L  L  P  *  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  V  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  H  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  S  Y  F  Q  L  M  I  T  G  Y  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  G  I  L  V  L  N  S  Y  L  V  Q  L  S  V  V  S  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  *  L  R  G  S  H  S  I  R  R  Y  R  N  G  A  S  T  R  F  K  I  N  A  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  *  E  L  T  N  Y  R  N  R  L  N  W  R  Y  L  G  S  I  I  P  E  M  C  Q  E  R  *  T  T  L  T  N  H  F  L  S  R  K  K  G  D  D  T  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  G  K  P  S  H  T  Q  N  Y  I  K  I  T  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  Q  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  *  Y  I  *  K  C  G  A  R  I  K  *  *  R  S  H  A  I  T  N  Q  K  I  T  C  D  N  S  I  R  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  D  T  L  V  G  L  T  K  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  F  E  T  T  C  P  K  K  D  T  K  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  S  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  S  I  S  S  I  N  T  I  T  K  R  F  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  I  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  I  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  M  G  Y  L  F  L  I  V  T  L  F  N  C  L  *  S  L  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  H  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  I  E  T  D  S  I  G  G  T  W  V  V  S  S  L  R  C  A  K  N  A  K  Q  P  L  L  T  I  F  L  A  G  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  L  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  *  P  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  R  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  V  D  D  T  Y  E  N  V  E  P  G  S  N  N  K  E  A  M  Q  S  Q  I  K  R  L  P  V  I  T  A  S  D </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  N  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  L  P  S  P  H  P  S  K  P  H  A  P  R  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  R  A  S  S  P  L  T  F  P  V  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  V  Y  H  Q  *  I  R  S  Q  R  D  S  S  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  S  E  K  Q  S  L  A  H  P  L  L  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  I  D  R  T  S  H  Q  C  E  E  W  D  T  C  S  *  *  L  P  C  S  T  V  C  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  M  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  L  T  P  R  E  P  F  Y  K  E  V  *  K  W  G  E  Y  P  V  Q  D  Q  C  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  L  R  T  H  E  L  S  K  P  T  Q  L  E  V  L  G  *  Y  H  P  *  D  V  P  R  T  L  N  N  P  Y  *  P  F  S  *  Q  E  E  R  R  *  Y  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  *  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  G  K  A  K  S  Y  P  E  L  H  Q  N  N  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  E  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  W  M  I  H  M  K  M  W  S  Q  D  Q  I  I  K  K  P  C  N  H  K  S  K  D  Y  L  *  *  Q  H  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10048" stop="9803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSAGNTSKNSRTIETDSIGGTWVVSSLRCAKNAKQPLLTIFLAGRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10511" stop="10272"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHKEIQVWLKNPVHQAHESSRGIHKTKRHHYKFVMPIPGPKSSLWHIRCSYFQLMITGYQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9652" stop="9425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFSTIRDSPTGVETRIGMSSNSQCKLRPLANVDDTYENVEPGSNNKEAMQSQIKRLPVITASD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0118H12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10579" stop="10382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISSTILKCSSCSFLLFEYTSISSINTITKRFKYGLKIPFIKLMKAAGAFIRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 115 chains have been computed
$ 
$ memory statistics:
$ 44928 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 3209 bytes was the average size of a spliced alignment
$ 9176 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2294 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 129 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:39:38
-->
