<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:51:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746177" ref_strand="+" ref_description="SGN-E746177 [GI|47104877]">
      <seq>gatggaagagagataaaaggggtcctctgaaaaattatgccccaaagcagaagccaaagtctactttgattgtacaaagaatccacagaaacaaaaaaatcacacaaaaaaaagaagaaaaagagagcaaaatcacacacatacacacagttgaattttaagttgaagatgtatacataaatctaatcaggttgaacctggacgatatgttggaagatcgatcttgtttggttcctagggatttctcaagagaaaacaacaactggtcggcctgcattaattacagcctcgatatgattgaagttcagaatggtaaaaggccattggaaaataatcaggaggatgaagttgtgcaacgcaagttgccaaagctatctgatgctcgtgatggaaaagaagtcgttctagcctcaccacatgaccaagctggtgatcagcgtcatgatgaagatactagttctcttattccttccattggccgagacaactctgttagctctctcattcattgctccaggtctgattttggggctattgcatctttaaatcgtagctttcgctcgttaattagtagtggggagctttacagactgaggcgtcaacaaggcgtggttgagcattgggtttatttttcttgccatctacgtcaatgggaagcttttgaccccattcgtcgccgttggatgcatctaccatcaatgaatttcaatgaatgttttgtgttctcagacaaggagtctttagcagttgggacagagctgcttgtgtttggaaaggagatattgtcacatgtcatttatcgttatagtttgctgacaaacagttggtcagctggaacagaaatgaacgcaccaaggtgtttgtttggctctgccagctctggggagattgccattctagctggtggttgtgactcacagggcaatatcctcagctcagcagaactttacaattcagagactggaacatggaagaccttaccaagcatgaacaagcggcggaagatgtgttctgcagtatttatggacaaaaagttttacgtaattggaggcattggaggtacggagtcatcaaacgcgctactgacttgtggagaggaatatgatttgaaaacaggaaaatggactgaaatttcgagcatgtctcctgtccgagctaggggtgatatgcctgctacttctgaagcacctcctttggttgcggttgtgaataatgatttgtatgctgctgattatgctgacatggaggtgaggaagtatgacaagaaaaacaaaacatgggctactataggaagattgcctgaaagagcagcttcaatgaatggttggggcttggcttttcgagcttgtggtgataggctaattgtaatcggaggacctagaaccatgggtgaagggcatatcgaagttaattcatgggttcctagtgaaggaccgcctcagtggaacttgcttggacgaaagcgatctggtagctttgtgtataattgtgctgtcatgggttgctgacatatgatttttgcaagtagatacagaattgggaattcttgccaattggtaacttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaactccaaaggcggccgcagaggtaaaatattaacttgaagatgggagcaatacagtgatagattttggttatgctgtgatccttatttttcttgacattgttgaggaagaaaaataaggttttgtagtgatgttcatttgacatcttgttttatgtaccaaatacatttattcttgtcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="9232" stop="12606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9531" g_stop="9721" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10608" g_stop="12315" g_length="1708"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="1898" r_length="1708" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E746177" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1899</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9531" e_stop="9721"/>
          <exon e_start="10608" e_stop="12315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAGGTAAATGGTAATCTTTTTTTTTTGAGTTTTTATTTTGTAAGTATGATAAAGAGATCTAATTGAATTATTGGGATTGGGATTGAAATTAATACAAGATTTGTTTTTGAGTTTTTGGGTGTTTTTTGATGTGAAATTAGAGATCTGGGTTGGTGAAGTATGCATTTTTTATCCAAAGTTTCAGCTTTTATAGCAATTTTTGGGTGTTTTTGATTCTGGGAATCTGCTATTTTTGGTGAATTTTGATTATCTTTGGAGGGTTTACTGAACTTTCATGTATTGGAAAACTGAATCTTTGTGGATTTTACTTATCTTTTGATTGAAAGCTTCAATTTTTTGGGTGTTTCTGATTTCAAGTATGTAATTTCTGGTGAATTTAGTTATTTCCTGATATTCTTCAGTTGTTGTTTGTTCTTGCATGTTCATTTGATTGAAATTTTTCAGGTTTTGAGGTGTTTCTAGTTGTGTATATAGATTGGCTTCTGCAGTTATGATGTGTATTGAAGAATCAAGTAAATCTAAATTGTACCTTAAATGAGTGTGTGGTTGTAAATTTGCTTTTATTCTTTGTATTTGCGTAATCTGGATTGGCTTTATTCATTATAAGATACTGGAATTGCTTTATTTTGTGATCGAATTGATGTCGATGGAAAGAGTAGTTAGAGATTGATTTCCTTTCTTGTGCTTTTATGAGGGAGAATTTTGTTGTTTGGTTTCTTAGAATTCAATAGGTTTCTGTCTTTGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAATGTTGTGCTTTGATGAAGGAGAATTTTGTTGTTTGGTTATTTAGAATTCAATAGGTTTCTATCTATGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAG</genome_strand>
        <mrna_strand>GATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAA-GAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTCGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419940" ref_strand="+" ref_description="SGN-E419940 [STM-30-O12]">
      <seq>cctcgtgccgtaaaaattatgccccaaagcagaagccaaagtctactttgattgcacaaacaatccatagaacctaaaatcacacacacaaaaaagaagaaaaagagagcaaaaacacacacatacacacagtagaaatttaaagttggagatgtatacataaatctaatcaggttgaacctggacgacatgttggaagatcggtcttgtttggttccgagggatttcacaagagaaagcaacaactggtcggcctgcatgaattacagcctcgatatgattgaagttcagcatggtaaaaggccattggaaaataatcaggaggatgaagttgtgcaacgcaagttgccaaagctatctgatgctcgtgatggagaagaagtcgttctagcgtcaccagatgaccaagctggtgaccagcgtcatgatgaagataccagttctcttattccatccattggccgagacaactctgttagctctctcattcattgctccaggtctgattatggtgctattgcatctttaaatcgtagcttccgctcgttaattaggagtggggagctttacagactgcggcgtcaacaaggcgtggttgagcattgggtttatttttcttgccatcttcgtcaatgggaaagctttgaccccattcgtcgccgttggatgcatctaccatcaatgaatttcaatgaatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="9253" stop="11436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9548" g_stop="9721" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886">
            <donor d_prob="0.899" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10608" g_stop="11136" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="702" r_length="529" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E419940" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9548" e_stop="9721"/>
          <exon e_start="10608" e_stop="11136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTG-AATTTTAAGTTGAAGATGTATACATAAATCTAATCAGGTAAATGGTAATCTTTTTTTTTTGAGTTTTTATTTTGTAAGTATGATAAAGAGATCTAATTGAATTATTGGGATTGGGATTGAAATTAATACAAGATTTGTTTTTGAGTTTTTGGGTGTTTTTTGATGTGAAATTAGAGATCTGGGTTGGTGAAGTATGCATTTTTTATCCAAAGTTTCAGCTTTTATAGCAATTTTTGGGTGTTTTTGATTCTGGGAATCTGCTATTTTTGGTGAATTTTGATTATCTTTGGAGGGTTTACTGAACTTTCATGTATTGGAAAACTGAATCTTTGTGGATTTTACTTATCTTTTGATTGAAAGCTTCAATTTTTTGGGTGTTTCTGATTTCAAGTATGTAATTTCTGGTGAATTTAGTTATTTCCTGATATTCTTCAGTTGTTGTTTGTTCTTGCATGTTCATTTGATTGAAATTTTTCAGGTTTTGAGGTGTTTCTAGTTGTGTATATAGATTGGCTTCTGCAGTTATGATGTGTATTGAAGAATCAAGTAAATCTAAATTGTACCTTAAATGAGTGTGTGGTTGTAAATTTGCTTTTATTCTTTGTATTTGCGTAATCTGGATTGGCTTTATTCATTATAAGATACTGGAATTGCTTTATTTTGTGATCGAATTGATGTCGATGGAAAGAGTAGTTAGAGATTGATTTCCTTTCTTGTGCTTTTATGAGGGAGAATTTTGTTGTTTGGTTTCTTAGAATTCAATAGGTTTCTGTCTTTGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAATGTTGTGCTTTGATGAAGGAGAATTTTGTTGTTTGGTTATTTAGAATTCAATAGGTTTCTATCTATGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTT</genome_strand>
        <mrna_strand>CCTCGTGC-CGTAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGCACAAACAATCCATAGAACCTAAAATCACACACACAAAAAA-GAAGAAAAAGAGAGCAAAAACACACACATACACACAGTAGAAATTTAAAGTTGGAGATGTATACATAAATCTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTGGACGACATGTTGGAAGATCGGTCTTGTTTGGTTCCGAGGGATTTCACAAGAGAAAGCAACAACTGGTCGGCCTGCATGAATTACAGCCTCGATATGATTGAAGTTCAGCATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAGAAGAAGTCGTTCTAGCGTCACCAGATGACCAAGCTGGTGACCAGCGTCATGATGAAGATACCAGTTCTCTTATTCCATCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTATGGTGCTATTGCATCTTTAAATCGTAGCTTCCGCTCGTTAATTAGGAGTGGGGAGCTTTACAGACTGCGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTTCGTCAATGGGAAAGCTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445373" ref_strand="+" ref_description="SGN-E445373 [cSTA-45-G22]">
      <seq>cctcgtgccgtaaaaattatgccccaaagcagaagccaaagtctactttgattgcacaaacaatccatagaacctaaaatcacacacacaaaaaagaagaaaaagagagcaaaaacacacacatacacacagtagaaatttaaagttggagatgtatacataaatctaatcaggttgaacctggacgacatgttggaagatcggtcttgtttggttccgagggatttcacaagagaaagcaacaactggtcggcctgcatgaattacagcctcgatatgattgaagttcagcatggtaaaaggccattggaaaataatcaggaggatgaagttgtgcaacgcaagttgccaaagctatctgatgctcgtgatggagaagaagtcgttctagcgtcaccagatgaccaagctggtgaccagcgtcatgatgaagataccagttctcttattccatccattggccgagacaactctgttagctctctcattcattgctccaggtctgattatggtgctattgcatctttaaatcgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="9253" stop="11271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9548" g_stop="9721" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886">
            <donor d_prob="0.899" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10608" g_stop="10971" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="537" r_length="364" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E445373" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9548" e_stop="9721"/>
          <exon e_start="10608" e_stop="10971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTG-AATTTTAAGTTGAAGATGTATACATAAATCTAATCAGGTAAATGGTAATCTTTTTTTTTTGAGTTTTTATTTTGTAAGTATGATAAAGAGATCTAATTGAATTATTGGGATTGGGATTGAAATTAATACAAGATTTGTTTTTGAGTTTTTGGGTGTTTTTTGATGTGAAATTAGAGATCTGGGTTGGTGAAGTATGCATTTTTTATCCAAAGTTTCAGCTTTTATAGCAATTTTTGGGTGTTTTTGATTCTGGGAATCTGCTATTTTTGGTGAATTTTGATTATCTTTGGAGGGTTTACTGAACTTTCATGTATTGGAAAACTGAATCTTTGTGGATTTTACTTATCTTTTGATTGAAAGCTTCAATTTTTTGGGTGTTTCTGATTTCAAGTATGTAATTTCTGGTGAATTTAGTTATTTCCTGATATTCTTCAGTTGTTGTTTGTTCTTGCATGTTCATTTGATTGAAATTTTTCAGGTTTTGAGGTGTTTCTAGTTGTGTATATAGATTGGCTTCTGCAGTTATGATGTGTATTGAAGAATCAAGTAAATCTAAATTGTACCTTAAATGAGTGTGTGGTTGTAAATTTGCTTTTATTCTTTGTATTTGCGTAATCTGGATTGGCTTTATTCATTATAAGATACTGGAATTGCTTTATTTTGTGATCGAATTGATGTCGATGGAAAGAGTAGTTAGAGATTGATTTCCTTTCTTGTGCTTTTATGAGGGAGAATTTTGTTGTTTGGTTTCTTAGAATTCAATAGGTTTCTGTCTTTGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAATGTTGTGCTTTGATGAAGGAGAATTTTGTTGTTTGGTTATTTAGAATTCAATAGGTTTCTATCTATGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGC</genome_strand>
        <mrna_strand>CCTCGTGC-CGTAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGCACAAACAATCCATAGAACCTAAAATCACACACACAAAAAA-GAAGAAAAAGAGAGCAAAAACACACACATACACACAGTAGAAATTTAAAGTTGGAGATGTATACATAAATCTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTGGACGACATGTTGGAAGATCGGTCTTGTTTGGTTCCGAGGGATTTCACAAGAGAAAGCAACAACTGGTCGGCCTGCATGAATTACAGCCTCGATATGATTGAAGTTCAGCATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAGAAGAAGTCGTTCTAGCGTCACCAGATGACCAAGCTGGTGACCAGCGTCATGATGAAGATACCAGTTCTCTTATTCCATCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTATGGTGCTATTGCATCTTTAAATCGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448445" ref_strand="+" ref_description="SGN-E448445 [cSTS-3-A8]">
      <seq>gtcctctaaaaattatgccccaaagcagaagccaaagtctactttgattgcacaaacaatccatagaacctaaaatcacacaaaaaagaagaaaaagagagcaaaaacacacacatacacacagtagaaattttaagttggagatgtatacataaatctaatcaggttgaacctggacgacatgttggaagatcggtcttgtttggttccgagggatatcacaagagaaagcaacaactggtcggcctgcatgaattacggccttgatatgattgaagttcagcatggtaaaaggccattggaaaataatcaggaggatgaagttgtgcaacgcaagttgccaaagctatctgatgctcgtgatggagaagaagtcgttctagcgtcaccagatgaccaagctggtgaccagcgtcatgatgaagataccagttctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="9252" stop="11183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9552" g_stop="9721" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886">
            <donor d_prob="0.899" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10608" g_stop="10883" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="441" r_length="276" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E448445" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9552" e_stop="9721"/>
          <exon e_start="10608" e_stop="10883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTG-AATTTTAAGTTGAAGATGTATACATAAATCTAATCAGGTAAATGGTAATCTTTTTTTTTTGAGTTTTTATTTTGTAAGTATGATAAAGAGATCTAATTGAATTATTGGGATTGGGATTGAAATTAATACAAGATTTGTTTTTGAGTTTTTGGGTGTTTTTTGATGTGAAATTAGAGATCTGGGTTGGTGAAGTATGCATTTTTTATCCAAAGTTTCAGCTTTTATAGCAATTTTTGGGTGTTTTTGATTCTGGGAATCTGCTATTTTTGGTGAATTTTGATTATCTTTGGAGGGTTTACTGAACTTTCATGTATTGGAAAACTGAATCTTTGTGGATTTTACTTATCTTTTGATTGAAAGCTTCAATTTTTTGGGTGTTTCTGATTTCAAGTATGTAATTTCTGGTGAATTTAGTTATTTCCTGATATTCTTCAGTTGTTGTTTGTTCTTGCATGTTCATTTGATTGAAATTTTTCAGGTTTTGAGGTGTTTCTAGTTGTGTATATAGATTGGCTTCTGCAGTTATGATGTGTATTGAAGAATCAAGTAAATCTAAATTGTACCTTAAATGAGTGTGTGGTTGTAAATTTGCTTTTATTCTTTGTATTTGCGTAATCTGGATTGGCTTTATTCATTATAAGATACTGGAATTGCTTTATTTTGTGATCGAATTGATGTCGATGGAAAGAGTAGTTAGAGATTGATTTCCTTTCTTGTGCTTTTATGAGGGAGAATTTTGTTGTTTGGTTTCTTAGAATTCAATAGGTTTCTGTCTTTGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAATGTTGTGCTTTGATGAAGGAGAATTTTGTTGTTTGGTTATTTAGAATTCAATAGGTTTCTATCTATGTTTTGATGAATTCTTATTGGGAATTCTATTGGTTAGGTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTAT</genome_strand>
        <mrna_strand>GTCCTCT-AAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGCACAAACAATCCATAG-AAC-CTAAAATCACAC--AAAAAA-GAAGAAAAAGAGAGCAAAAACACACACATACACACAGTAGAAATTTTAAGTTGGAGATGTATACATAAATCTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTGGACGACATGTTGGAAGATCGGTCTTGTTTGGTTCCGAGGGATATCACAAGAGAAAGCAACAACTGGTCGGCCTGCATGAATTACGGCCTTGATATGATTGAAGTTCAGCATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAGAAGAAGTCGTTCTAGCGTCACCAGATGACCAAGCTGGTGACCAGCGTCATGATGAAGATACCAGTTCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213023" ref_strand="+" ref_description="SGN-E213023 [cLEC-72-O24]">
      <seq>tggaaaagaagtcgttctagcctcaccacatgaccaagctggtgatcagcgtcatgatgaagatactagttctcttattccttccattggccgagacaactctgttagctctctcattcattgctccaggtctgattttggggctattgcatctttaaatcgtagctttcgctcgttaattagtagtggggagctttacagactgaggcgtcaacaaggcgtggttgagcattgggtttatttttcttgccatctacgtcaatgggaagcttttgaccccattcgtcgccgttggatgcatctaccatcaatgaatttcaatgaatgttttgtgttctcagacaaggagtctttagcagttgggacagagctgcttgtgtttggaaaggagatattgtcacatgtcatttatcgttatagtttgctgacaaacagttggtcagctggaacagaaatgaacgcaccaaggtgtttgtttggctctgccagctctggggagattgccattctagctggaggatgtgactcacagggcaatatcctcagctcagcagaactttacaattcagagactggaacatggaagaccttagcgagcatgaacaagcggcgggagatgtgttctgcagtatttatggaccaaaagttttacgtaattggaggcattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="10506" stop="11776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10806" g_stop="11476" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E213023" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10806" e_stop="11476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAG</genome_strand>
        <mrna_strand>TGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGAGGATGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTAGCGAGCATGAACAAGCGGCGGGAGATGTGTTCTGCAGTATTTATGGACCAAAAGTTTTACGTAATTGGAGGCATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707938" ref_strand="+" ref_description="SGN-E707938 [FA34BE11]">
      <seq>ccctggtctgattttggggctattgcatctttaaatcgtagctttcgctcgttaattagtagtggggagctttacagactgaggcgtcaacaaggcgtggttgagcattgggtttatttttcttgccatctacgtcaatgggaagcttttgaccccattcgtcgccgttggatgcatctaccatcaatgaatttcaatgaatgttttgtgttctcagacaaggagtctttagcagttgggacagagctgcttgtgtttggaaaggagatattgtcacatgtcatttatcgttatagtttgctgacaaacagttggtcagctggaacagaaatgaacgcaccaaggtgtttgtttggctctgccagctctggggagattgccattctagctggtggttgtgactcacagggcaatatcctcagctcagcagaactttacaattcagagactggaacatggaagaccttaccaagcatgaacaagcggcggaagatgtgttctgcagtatttatggacaaaaagttttacgtaattggaggcattggaggtacggagtcatcaaacgcgctactgacttgtggagaggaatatgatttgaaaacaggaaaatggactgaaatttcgagcatgtctcctgtccgagctaggggtgatatgcctgctacttctgaagcacctcctttggttgcggttgtgaataatgatttgtatgctgctgattatgctgacatggaggtgaggaagtatgacaagaaaaacaaaacatgggctactataggaagattgcctgaaagagcagcttcaatgaatggttggggcttggcttttcgagcttgtggtgataggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="10631" stop="12077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10930" g_stop="11777" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E707938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10930" e_stop="11777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCT</genome_strand>
        <mrna_strand>CCCTGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283997" ref_strand="+" ref_description="SGN-E283997 [cLER-13-L16]">
      <seq>aaaaacaaaacatgggctactataggaagattgcctgaaagagcagcttcaatgaatggttggggcttggcttttcgagcttgtggtgataggctaattgtaatcggaggacctagaaccatgggtgaagggcatatcgaagttaattcatgggttcctagtgaaggaccgcctcagtggaacttgcttggacgaaagcgatctggtagctttgtgtataattgtgctgtcatgggttgctgacatatgatttttgcaagtagatacagaattgggaattcttgccaattggtaacttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="11383" stop="12423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11683" g_stop="12123" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E283997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11683" e_stop="12123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAAC</genome_strand>
        <mrna_strand>AAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233075" ref_strand="+" ref_description="SGN-E233075 [cLED-6-B19]">
      <seq>gaagattgcctgaaagagcagcttcaatgaatggttggggcttggcttttcgagcttgtggtgataggctaattgtaatcggaggacctagaaccatgggtgaagggcatatcgaagttaattcatgggttcctagtgaaggaccgcctcagtggaacttgcttggacgaaagcgatctggtagctttgtgtataattgtgctgtcatgggttgctgacatatgatttttgcaagtagatacagaattgggaattcttgccaattggtaacttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaactccaaaggcggccgcagaggtaaaatattaacttgaagatgggagcaatacagtgatagattttggttatgctgtgatccttatttttcttgacattgttgaggaagaaaaataaggttttggagtgatgttcatttgacatcttgttttatgtaccaaatacatttattcttgttgacaacaggctacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="11408" stop="12616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11708" g_stop="12316" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E233075" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11708" e_stop="12316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGT</genome_strand>
        <mrna_strand>GAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGGAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204026" ref_strand="+" ref_description="SGN-E204026 [cLEC-22-C20]">
      <seq>agaaaggcattctaaaggcaccaatattgtctcaacttgtagcctgttgtcaacaagaataaatgtatttggtacataaaacaagatgtcaaatgaacatcactacaaaaccttatttttcttcctcaacaatgtcaagaaaaataaggatcacagcataaccaaaatctatcactgtattgctcccatcttcaagttaatattttacctctgcggccgcctttggagttttatgcaaatgaaaatgggagatgagataagtcgtactcaggatcgaccttctaaataacgtaattctgttgaatattgggtatagtttggtaatctgataagataaaacagaaggattcagaaacgaaaaggttgggataagttaccaattggcaagaattcccaattctgtatctacttgcaaaaatcatatgtcagcaacccatgacagcacaattatacacaaagctaccagatcgctttcgttcaagcaagttccactgaagcggtccttcactaggaacccatgaattaacttcgatatgcccttcacccatggttctaggtcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="12650" stop="11489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12350" g_stop="11789" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E204026" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12350" e_stop="11789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGCATTCTAAAGGCACCAATATTGTCTCAACTTGTAGCCTGTTGTCAACAAGAATAAATGTATTTGGTACATAAAACAAGATGTCAAATGAACATCACTACAAAACCTTATTTTTCTTCCTCAACAATGTCAAGAAAAATAAGGATCACAGCATAACCAAAATCTATCACTGTATTGCTCCCATCTTCAAGTTAATATTTTACCTCTGCGGCCGCCTTTGGAGTTTTATGCAAATGAAAATGGGAGATGAGATAAGTCGTACTCAGGATCGACCTTCTAAATAACGTAATTCTGTTGAATATTGGGTATAGTTTGGTAATCTGATAAGATAAAACAGAAGGATTCAGAAACGAAAAGGTTGGGATAAGTTACCAATTGGCAAGAATTCCCAATTCTGTATCTACTTGCAAAAATCATATGTCAGCAACCCATGACAGCACAATTATACACAAAGCTACCAGATCGCTTTCGTCCAAGCAAGTTCCACTGAGGCGGTCCTTCACTAGGAACCCATGAATTAACTTCGATATGCCCTTCACCCATGGTTCTAGGTCCTC</genome_strand>
        <mrna_strand>AGAAAGGCATTCTAAAGGCACCAATATTGTCTCAACTTGTAGCCTGTTGTCAACAAGAATAAATGTATTTGGTACATAAAACAAGATGTCAAATGAACATCACTACAAAACCTTATTTTTCTTCCTCAACAATGTCAAGAAAAATAAGGATCACAGCATAACCAAAATCTATCACTGTATTGCTCCCATCTTCAAGTTAATATTTTACCTCTGCGGCCGCCTTTGGAGTTTTATGCAAATGAAAATGGGAGATGAGATAAGTCGTACTCAGGATCGACCTTCTAAATAACGTAATTCTGTTGAATATTGGGTATAGTTTGGTAATCTGATAAGATAAAACAGAAGGATTCAGAAACGAAAAGGTTGGGATAAGTTACCAATTGGCAAGAATTCCCAATTCTGTATCTACTTGCAAAAATCATATGTCAGCAACCCATGACAGCACAATTATACACAAAGCTACCAGATCGCTTTCGTTCAAGCAAGTTCCACTGAAGCGGTCCTTCACTAGGAACCCATGAATTAACTTCGATATGCCCTTCACCCATGGTTCTAGGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236046" ref_strand="+" ref_description="SGN-E236046 [cLED-16-J3]">
      <seq>ggaacttgcttggacgaaagcgatctggtagctttgtgtataattgtgctgtcatgggttgctgacatatgatttttgcaagtagatacagaattgggaattcttgccaattggtaacttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaactccaaaggcggccgcagaggtaaaatattaacttgaagatgggagcaatacagtgatagattttggttatgctgtgatccttatttttcttgacattgttgaggaagaaaaataaggttttgtagtgatgttcatttgacatcttgttttatgtaccaaatacatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="11561" stop="12592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11861" g_stop="12292" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E236046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11861" e_stop="12292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTAT</genome_strand>
        <mrna_strand>GGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351143" ref_strand="+" ref_description="SGN-E351143 [cTOS-6-P2]">
      <seq>ttatcccaaccttttcgtttctgaatccttctgttttatcttatcagattaccaaactatacccaatattcaacagaattacgttatttagaaggtcgatcctgagtacgacttatctcatctcccattttcatttgcataaaactccaaaggcggccgcagaggtaaaatattaacttgaagatgggagcaatacagtgatagattttggttatgctgtgatccttatttttcttgacattgttgaggaagaaaaataaggttttgtagtgatgttcatttgacatcttgttttatgtaccaaatacatttattcttgttgacaacaggctacaagttgagacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="11679" stop="12626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11979" g_stop="12329" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12330" i_stop="12415" i_length="86">
            <donor d_prob="0.693" d_score="0.92"/>
            <acceptor a_prob="0.099" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12416" g_stop="12421" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="357" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E351143" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11979" e_stop="12329"/>
          <exon e_start="12416" e_stop="12421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAATATTGGTGCCTTTAGAATGCCTTTCTACTTTCCCTTTAAATTTGTGTTATTTGAGCTTTATATTGTTGTAATCGAGCTAAATATCTTTTAGAAACAA</genome_strand>
        <mrna_strand>TTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAAAAAAA......................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419941" ref_strand="+" ref_description="SGN-E419941 [STM-30-O12]">
      <seq>caataatgtctcaatttgtagcctgtcaacaagaataaatgtattttttacctaaaacaagatctcaaatgaacatcactacaaaaccttatttttcttcctcaacaatgtcaataaaaataaggatcacagcagaaccaaaatctatcactgtattgctcccatcttcaagttaatattttacctatgcggcgcctttggagttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="12603" stop="11816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12329" g_stop="12116" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E419941" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12329" e_stop="12116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTGTCTCAACTTGTAGCCTGTTGTCAACAAGAATAAATGTATTTGGTACATAAAACAAGATGTCAAATGAACATCACTACAAAACCTTATTTTTCTTCCTCAACAATGTCAAGAAAAATAAGGATCACAGCATAACCAAAATCTATCACTGTATTGCTCCCATCTTCAAGTTAATATTTTACCTCTGCGGCCGCCTTTGGAGTTTTATG</genome_strand>
        <mrna_strand>CAATAATGTCTCAATTTGTAGCC---TGTCAACAAGAATAAATGTATTTTTTACCTAAAACAAGATCTCAAATGAACATCACTACAAAACCTTATTTTTCTTCCTCAACAATGTCAATAAAAATAAGGATCACAGCAGAACCAAAATCTATCACTGTATTGCTCCCATCTTCAAGTTAATATTTTACCTATGCGG-CGCCTTTGGAGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290934" ref_strand="+" ref_description="SGN-E290934 [cLET-8-O17]">
      <seq>actaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14653" stop="12744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14353" g_stop="14054" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13037" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="653" r_length="353" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E290934" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14353" e_stop="14054"/>
          <exon e_start="13389" e_stop="13037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACCATGTG</genome_strand>
        <mrna_strand>ACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424568" ref_strand="-" ref_description="SGN-E424568 [STM-43-D16]">
      <seq>aaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtccgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctatttgtggtttatcttcatgtagtagtaaagaaatattaaacagaagtttctaattttggattttgcagtgttttaagagttggaaaaaaatctgtcttnccatacgataaaagagtgaaaaaaactcgaggggaggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14650" stop="12762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14350" g_stop="14054" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13040" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="646" r_length="349" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E424568" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14350" e_stop="14054"/>
          <exon e_start="13389" e_stop="13040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACCAT</genome_strand>
        <mrna_strand>AAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCT-AATTTTGGATTTTGCAGTGTTTTAAGAGTTGGAAAAAAATCTGTCTTNCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724278" ref_strand="+" ref_description="SGN-E724278 [FC23CE03]">
      <seq>gacattgaaggagccgtaaagcatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtcttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15767" stop="12741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15468" g_stop="15418" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="432" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13041" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="781" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E724278" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15468" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACCA</genome_strand>
        <mrna_strand>GACATTGAAGGAGCCGTA-AAGCATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711455" ref_strand="+" ref_description="SGN-E711455 [FB02AC03]">
      <seq>ccaatgagaggaacaaacatggtgcacgtctctttttatcgcacctatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtacgagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtcttaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15761" stop="12741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15463" g_stop="15418" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.89"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="428" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13042" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="776" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="790"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E711455" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15463" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACC</genome_strand>
        <mrna_strand>CCAATGAGAGGAACAAACATGGTGCACGTCTCTTTTTATCGCACCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTACGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540736" ref_strand="+" ref_description="SGN-E540736 [TUS-61-C17](-)">
      <seq>gactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtcttaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14654" stop="12744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14354" g_stop="14054" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13044" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="647" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="664"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E540736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14354" e_stop="14054"/>
          <exon e_start="13389" e_stop="13044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</genome_strand>
        <mrna_strand>GACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540738" ref_strand="+" ref_description="SGN-E540738 [TUS-61-C17]">
      <seq>gactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14654" stop="12744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14354" g_stop="14054" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13044" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="647" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="663"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E540738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14354" e_stop="14054"/>
          <exon e_start="13389" e_stop="13044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</genome_strand>
        <mrna_strand>GACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586732" ref_strand="+" ref_description="SGN-E586732 [75566]">
      <seq>cccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtccgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctatttgtggtttatcttcatgtagtagtaaagaaatattaaacagaagtttctaattttggattttgcagtgttttaagagttttgactaaatctgtcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="13639" stop="12744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13339" g_stop="13044" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="309"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E586732" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13339" e_stop="13044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</genome_strand>
        <mrna_strand>CCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCT-AATTTTGGATTTTGCAGTGTTTTAAGAGTTTTGACTAAATCTGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718519" ref_strand="+" ref_description="SGN-E718519 [FC04DF06]">
      <seq>gctctgtacattgaagcagacaaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcaaagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaatctgtctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15773" stop="12745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15474" g_stop="15418" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="439" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13045" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="784" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="796"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E718519" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15474" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTT</genome_strand>
        <mrna_strand>GCTCTGTACATTGAAGCAGACAAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706359" ref_strand="+" ref_description="SGN-E706359 [FA29DA04]">
      <seq>cgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15754" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="15418" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="419" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="755" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E706359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258652" ref_strand="-" ref_description="SGN-E258652 [cLEG-50-G20]">
      <seq>gagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14700" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14400" g_stop="14054" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="683" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="702"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E258652" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14400" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>GAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391915" ref_strand="+" ref_description="SGN-E391915 [TUS-24-E16](-)">
      <seq>agaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14699" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14399" g_stop="14054" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="682" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="694"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E391915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14399" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>AGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355451" ref_strand="-" ref_description="SGN-E355451 [cTOS-25-A5]">
      <seq>gatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttatctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgaattaagagttttgactaaaaaaaaaaaaaaaaaaaaaaanccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14571" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14271" g_stop="14054" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="554" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="555" polyA_stop="576"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E355451" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14271" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>GATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTATCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGAATTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352424" ref_strand="+" ref_description="SGN-E352424 [cTOS-9-F14]">
      <seq>ggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatctttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14563" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14263" g_stop="14054" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="547" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E352424" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14263" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATC-TTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>GGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256426" ref_strand="-" ref_description="SGN-E256426 [cLEG-38-G6]">
      <seq>atgaacaggtatgggttgttggataagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggntaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgaataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14520" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14220" g_stop="14054" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="503" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="522"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E256426" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256426" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14220" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>ATGAACAGGTATGGGTTGTTGGATAAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGNTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281861" ref_strand="-" ref_description="SGN-E281861 [cLES-2-I10]">
      <seq>cttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14445" stop="12754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14145" g_stop="14054" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13054" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="428" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E281861" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14145" e_stop="14054"/>
          <exon e_start="13389" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>CTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230438" ref_strand="+" ref_description="SGN-E230438 [cLEL-35-A9](-)">
      <seq>aggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttcccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgactaacccacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="13678" stop="12754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13378" g_stop="13054" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="349"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E230438" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13378" e_stop="13054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</genome_strand>
        <mrna_strand>AGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTCCCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720500" ref_strand="+" ref_description="SGN-E720500 [FC11AA04]">
      <seq>gggcgattggcggccaatcggccgaattgctctgtacattgaaggagacgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcaaagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15780" stop="12757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15477" g_stop="15418" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="85" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="467" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13057" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="800" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E720500" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15477" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCTGTACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAC</genome_strand>
        <mrna_strand>ATTGCTCTGTACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553774" ref_strand="-" ref_description="SGN-E553774 [cTSC-2-D10]">
      <seq>caaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaagagttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15750" stop="12757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15418" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="415" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13057" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="748" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E553774" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553774" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAC</genome_strand>
        <mrna_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424169" ref_strand="-" ref_description="SGN-E424169 [STM-43-K17]">
      <seq>caggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctatttgtggtttatattcatgtagtagtaaagaaatattaaacagaagtttctaattttggattttgcaaaattttaagagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14602" stop="12776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14302" g_stop="14054" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13060" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="578" r_length="329" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E424169" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14302" e_stop="14054"/>
          <exon e_start="13389" e_stop="13060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTT</genome_strand>
        <mrna_strand>CAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTGTGGTTTATATTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCT-AATTTTGGATTTTGCAAAATTTTAAGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218676" ref_strand="+" ref_description="SGN-E218676 [cLEL-18-P3](-)">
      <seq>ggtggtaaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaacaaatattaaacagaagtttctaaatcctggattttgccctgttttaagagttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="13677" stop="12753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13377" g_stop="13060" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="336"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E218676" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13377" e_stop="13060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTT</genome_strand>
        <mrna_strand>GGTGGTAAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAACAAATATTAAACAGAAGTTTCTAAATCCTGGATTTTGCCCTGTTTTAAGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723980" ref_strand="+" ref_description="SGN-E723980 [FC22CG02]">
      <seq>cggccgaattggtacattgaaggagcttaaaaggatggtgcacgtctctttttatcgcaactatggcatgacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcaaagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15752" stop="12765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15477" g_stop="15418" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="62" r_length="58" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="444" r_length="382" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13065" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="769" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E723980" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15477" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCTGTACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGA</genome_strand>
        <mrna_strand>CGA-ATTGGTACATTGAAGGAG-CTTAAAAGGATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCATGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579538" ref_strand="+" ref_description="SGN-E579538 [86668]">
      <seq>gagacgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtacgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctatttgtggtttatcttcatgtagtagtaaagaaatattaaacagaagttctaattttggattttgcagtgttttaaaaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15758" stop="12765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15458" g_stop="15418" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="423" r_length="382" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13065" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="746" r_length="323" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E579538" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15458" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGA</genome_strand>
        <mrna_strand>GAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTACGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAGAAG-TTCT-AATTTTGGATTTTGCAGTGTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355436" ref_strand="+" ref_description="SGN-E355436 [cTOS-25-K22]">
      <seq>acgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatnctttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggaatttgcactggtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="12765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15455" g_stop="15418" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="420" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13065" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="745" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="760"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E355436" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15455" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGA</genome_strand>
        <mrna_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATNCTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGAATTTGCACTGGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350076" ref_strand="+" ref_description="SGN-E350076 [cTOS-4-P15]">
      <seq>acgaacaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctattttgtggttaccttcatgtagtagtaaagaatattaaacagaagtttctaaatctgggattttgcactgttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="12767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15455" g_stop="15418" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="419" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13066" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="742" r_length="323" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E350076" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15455" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAG</genome_strand>
        <mrna_strand>ACGAAC-AACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTTGTGGTTACCTTCATGTAGTAGTAAAG-AATATTAAACAGAAGTTTCTAAATCTGGGATTTTGCACTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716006" ref_strand="+" ref_description="SGN-E716006 [FB15DE03]">
      <seq>caaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcactgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15750" stop="12769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15418" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="415" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13069" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="736" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E716006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTT</genome_strand>
        <mrna_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270141" ref_strand="+" ref_description="SGN-E270141 [cLEM-7-H4]">
      <seq>tttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14614" stop="12778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14314" g_stop="14054" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13078" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="573" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E270141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14314" e_stop="14054"/>
          <exon e_start="13389" e_stop="13078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTG</genome_strand>
        <mrna_strand>TTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265336" ref_strand="-" ref_description="SGN-E265336 [cLEI-9-N9]">
      <seq>cttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatcttggattttgcaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14530" stop="12776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14230" g_stop="14054" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13079" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="488" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="514"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E265336" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265336" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14230" e_stop="14054"/>
          <exon e_start="13389" e_stop="13079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTT</genome_strand>
        <mrna_strand>CTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560383" ref_strand="+" ref_description="SGN-E560383 [20028]">
      <seq>aacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagtcggaaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtccgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctatttgtggtttatcttcatgtagtagtaaagaaatattaaacagaagtttctaattttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15748" stop="12780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15448" g_stop="15418" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="413" r_length="382" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13080" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="722" r_length="309" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E560383" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15448" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTT</genome_strand>
        <mrna_strand>AACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGGAAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCT-AATTTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249175" ref_strand="-" ref_description="SGN-E249175 [cLEF-50-K21]">
      <seq>aggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14696" stop="12790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14396" g_stop="14054" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13083" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="650" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E249175" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14396" e_stop="14054"/>
          <exon e_start="13389" e_stop="13083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGA</genome_strand>
        <mrna_strand>AGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355493" ref_strand="+" ref_description="SGN-E355493 [cTOS-25-O3]">
      <seq>ttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14613" stop="12790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14313" g_stop="14054" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13083" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="567" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E355493" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14313" e_stop="14054"/>
          <exon e_start="13389" e_stop="13083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGA</genome_strand>
        <mrna_strand>TTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228640" ref_strand="+" ref_description="SGN-E228640 [cLEL-29-B10](-)">
      <seq>gtgctcatcaggcaaaggcatatcanagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacagtgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtgtgctgccaaaaaggctgctggtggttatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctcctatttgtggtttaccttcatgcagtagtaaagaaatattaaactgaaggttctaaatcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14379" stop="12783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14079" g_stop="14054" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13083" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="333" r_length="307" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E228640" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14079" e_stop="14054"/>
          <exon e_start="13389" e_stop="13083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGA</genome_strand>
        <mrna_strand>GTGCTCATCAGGCAAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACAGTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTGTGCTGCCAAAAAGGCTGCTGGTGGTTATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTCCTATTTGTGGTTTACCTTCATGCAGTAGTAAAGAAATATTAAACTGAAGGTTCTAAATCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721650" ref_strand="+" ref_description="SGN-E721650 [FC14DA11]">
      <seq>catggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcaaagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaatattaaacagaagtttctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15746" stop="12788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15446" g_stop="15418" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="411" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13088" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="713" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E721650" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15446" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATC</genome_strand>
        <mrna_strand>CATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451830" ref_strand="+" ref_description="SGN-E451830 [cSTS-14-I2]">
      <seq>aaaactggtgcacgtctctttttctcgcaactctgggaagacctttaagatgccacgaaggccctacgagaaggagcgattggctgcagaattgaaacttgtaggagagtatggacctaaggtgcaagagggagctttggagagttcagtacgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgaagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggaatgaacaggtatggattgttggatgaaaagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagaagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactggcctatcttatttttctgctattttgtggtttatcttcatgtagtagtaaagaaatattaaacagaagtttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15749" stop="12791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15418" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="419" r_length="387" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13090" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="720" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E451830" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGA-CTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATG-AGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGG-ATGAACAGGTATGGGTTGTTGGATG-AGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAG-AGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTA-TTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAA</genome_strand>
        <mrna_strand>AAAACTGGTGCACGTCTCTTTTTCTCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAAGACCTTTAAGATGCCACGAAGGCCCTACGAGAAGGAGCGATTGGCTGCAGAATTGAAACTTGTAGGAGAGTATGGACCTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTACGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGAATGAACAGGTATGGATTGTTGGATGAAAAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGCCTATCTTATTTTTCTGCTATTTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602772" ref_strand="+" ref_description="SGN-E602772 [55844]">
      <seq>ggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtacgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagtactgggctatcttatttttctgctatttgtggtttatcttcatgtagtagtaaagaaatattaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15743" stop="12801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15443" g_stop="15418" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="408" r_length="382" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13101" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="697" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E602772" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15443" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAG</genome_strand>
        <mrna_strand>GGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTACGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTACTGGGCTATCTTATTTTTCTGCTATTTGTGGTTTATCTTCATGTAGTAGTAAAGAAATATTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229120" ref_strand="+" ref_description="SGN-E229120 [cLEL-29-B10](-)">
      <seq>tccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtgtgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaccgattttagtgtttggtctatttggcttgtagttcagacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaataagtattaaaatatctcttactagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="13608" stop="12792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13308" g_stop="13104" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E229120" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13308" e_stop="13104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAA</genome_strand>
        <mrna_strand>TCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTGTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCACCGATTTTAGTGTTTGGTCTATTTGGCTTGTAGTTCAGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAATAAGTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340820" ref_strand="+" ref_description="SGN-E340820 [cTOF-5-F21]">
      <seq>aacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctgaaagagtgaagcgaaagaccaaaagtgtgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaaagaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15752" stop="12809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15452" g_stop="15418" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="417" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13109" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="697" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E340820" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15452" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATA</genome_strand>
        <mrna_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGAAAGAGTGAAGCGAAAG-ACCAAAAGTGTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291827" ref_strand="+" ref_description="SGN-E291827 [cLET-7-E18]">
      <seq>actaaggcgcatgagggagctttggagagttcagtatgctttgaaccgtatcaagaatgctgctagaatgcttctgacattggatgagaaggatccacgttgtatttttgaaggtgaagctctttcgaggaggatgaacaggtgtgggtggatggatgagagcgcaaaacaagctcgattatgtcttgggcctcaccgcggagaactttcttgtgcgtcatctccaaacactagtgttcaagaccggcatggctaagtcaatccattatgccagagtgctcattacgcaaaggcatatgagagttggtaggcaagtggtgaatgttgcttctttcatggtgagagtagactcccagaagcacattgacctctctgtcactagtacatttggcggagggcgtcctggaagagtgaaccgaactaaccaactgtctggtgccaagaaagctgctggtggtgacggagacgaagaggatgaagaatgatcaactaacttagggtgtggtccatggggcttgaagttctgacctatcttttttttgtgctatttgtggttgaccttcatgtactatttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14653" stop="12814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14353" g_stop="14054" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.375" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13114" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="577" r_length="276" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E291827" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14353" e_stop="14054"/>
          <exon e_start="13389" e_stop="13114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGC-CAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAG</genome_strand>
        <mrna_strand>ACTAAGGCGCATGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAACCGTATCAAGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTTGTATTTTTGAAGGTGAAGCTCTTTCGAGGAGGATGAACAGGTGTGGGTGGATGGATGAGAGCGCAAAACAAGCTCGATTATGTCTTGGGCCTCACCGCGGAGAACTTTCTTGTGCGTCATCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATCCATTATGCCAGAGTGCTCATTACGCAAAGGCATATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAAGTGGTGAATGTTGCTTCTTTCATGGTGAGAGTAGACTCCCAGAAGCACATTGACCTCTCTGTCACTAGTACATTTGGCGGAGGGCGTCCTGGAAGAGTGAACCGAACTAACCAACTGTCTGGTGCCAAGAAAGCTGCTGGTGGTGACGGAGACGAAGAGGATGAAGAATGATCAACTAACTTAGGGTGTGGTCCATGGGGCTTGAAGTTCTGACCTATCTTTTTTTTGTGCTATTTGTGGTTGACCTTCATGTACTATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348820" ref_strand="+" ref_description="SGN-E348820 [cTOF-29-H19]">
      <seq>gtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggcttgtagttctgacctatcttttttttctgctatttgtggtttaccttcatgtagtagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15742" stop="12816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15442" g_stop="15418" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="407" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13116" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="681" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E348820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15442" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAA</genome_strand>
        <mrna_strand>GTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343815" ref_strand="+" ref_description="SGN-E343815 [cTOF-12-O9]">
      <seq>aacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggtggtgatggtgatgaagaggatgaagaatgatcaactatcttagtgtttggtctatttggctttgtagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15752" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15452" g_stop="15418" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="417" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13165" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="643" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E343815" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15452" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGC-TTGTAGTTCTG</genome_strand>
        <mrna_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTTGTAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424567" ref_strand="+" ref_description="SGN-E424567 [STM-43-D16]">
      <seq>caaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaacaaaagtccgctgccaagaaggctgctggtggtgatggtgatgaaaaggatgaanaaatgatcactatcttagtggttgggctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15750" stop="12878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15418" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="415" r_length="382" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13178" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="626" r_length="211" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E424567" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAG-AATGATCAACTATCTTAGTGTTTGGTCTATTTG</genome_strand>
        <mrna_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAA-CAAAAGTCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAAAGGATGAANAAATGATC-ACTATCTTAGTGGTTGGGCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343995" ref_strand="+" ref_description="SGN-E343995 [cTOF-12-K4]">
      <seq>aacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaagcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaatgctgctggtggtgatggtgatgaacaggatgaagaatgatcaactatcttagtgtttggtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15752" stop="12881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15452" g_stop="15418" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="417" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13181" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="626" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E343995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15452" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTAT</genome_strand>
        <mrna_strand>AACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAAGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAATGCTGCTGGTGGTGATGGTGATGAACAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447323" ref_strand="+" ref_description="SGN-E447323 [cSTA-26-E1]">
      <seq>ttcggcacgaggcagagttgaagcttgttggagagtatggactgaggtgcaagagggagttgtggagagttcagtatgctttgagccgtatccgaaatgctgcaagaatgcttctgacccttgatgagaaagattcacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacagatatggattgttggatgagagccagaacaagctcgattatgtcttggcactcactgtcgagaacttccttgaacgtcgtctgcaaacccttgtgttcaagactggcatggctaagtcaattcaccacgcaagagtgctcatcaggcaaaggcatatcagggttggaaggcaagtggtgaatgttgcttcattcatggtgagagtggactctcagaagcacattgacttctctctaaccagtccttttggtggcgggcgtccaggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggcggtgatggtgatgaggaggatgaagaatgagcttttgcgtaagaacccaaagaaagctgtctggtgatggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14685" stop="12904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14393" g_stop="14054" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.375" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13207" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="523" r_length="183" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E447323" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14393" e_stop="14054"/>
          <exon e_start="13389" e_stop="13207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATG</genome_strand>
        <mrna_strand>TTCGGCACGAGGCAGAGTTGAAGCTTGTTGGAGAGTATGGACTGAGGTGCAAGAGGGAGTTGTGGAGAGTTCAGTATGCTTTGAGCCGTATCCGAAATGCTGCAAGAATGCTTCTGACCCTTGATGAGAAAGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGATATGGATTGTTGGATGAGAGCCAGAACAAGCTCGATTATGTCTTGGCACTCACTGTCGAGAACTTCCTTGAACGTCGTCTGCAAACCCTTGTGTTCAAGACTGGCATGGCTAAGTCAATTCACCACGCAAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAAGGCAAGTGGTGAATGTTGCTTCATTCATGGTGAGAGTGGACTCTCAGAAGCACATTGACTTCTCTCTAACCAGTCCTTTTGGTGGCGGGCGTCCAGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGCGGTGATGGTGATGAGGAGGATGAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206862" ref_strand="+" ref_description="SGN-E206862 [cLEC-33-M10]">
      <seq>gagttcagtatgctttgagccgtatcaggaatgctgcaagaatgcttctgacccttgatgagaaagacccacgtcgtatttttgaaggtgaagctcttttgaggaggatgaacaggtatgggctgttggacgagagccagaacaagcttgattacgtcttggcactcactgttgagaacttcctcgaacgtcgtctgcaaacacttgtcttcaagactggcatggccaagtcaatccaccatgcgagagtgctcatcaggcaaaggcacatcagggttggaaggcaagtcgtgaatgttgcttcattcatggtgagagtcgactctcagaagcacattgatttctctctaaccagtccttttggtggtgggcgtccaggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggcggtgatggtgatgaggatgatgaagaatgagcttttgagcaagaatttaaagaagaagtgtggcgacggaatcgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14627" stop="12904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14327" g_stop="14054" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.375" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13207" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="457" r_length="183" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E206862" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14327" e_stop="14054"/>
          <exon e_start="13389" e_stop="13207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATG</genome_strand>
        <mrna_strand>GAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCAAGAATGCTTCTGACCCTTGATGAGAAAGACCCACGTCGTATTTTTGAAGGTGAAGCTCTTTTGAGGAGGATGAACAGGTATGGGCTGTTGGACGAGAGCCAGAACAAGCTTGATTACGTCTTGGCACTCACTGTTGAGAACTTCCTCGAACGTCGTCTGCAAACACTTGTCTTCAAGACTGGCATGGCCAAGTCAATCCACCATGCGAGAGTGCTCATCAGGCAAAGGCACATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAAGGCAAGTCGTGAATGTTGCTTCATTCATGGTGAGAGTCGACTCTCAGAAGCACATTGATTTCTCTCTAACCAGTCCTTTTGGTGGTGGGCGTCCAGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGCGGTGATGGTGATGAGGATGATGAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449111" ref_strand="+" ref_description="SGN-E449111 [cSTS-5-K8]">
      <seq>atttctcagttcatttcagcaggtcgccgattgaggacggcgccgtcaaccggtaaacatggtgcacgtctccttttaccgcaactatgggaaaacctttaagaagcctcgacgtccctatgagaaggagaggttggatgcagagttgaagcttgttggagagtatggactgcggtgcaaaagggagttgtggagagttcagtatgctttgagccgtatcaggaatgctgcaagaatgcttctgacccttgatgagaaagatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacagatatggattgttggatgagagccagaacaagctcgattatgtcttggcactcactgttgagaacttccttgaacgtcgtctgcaaacccttgtgttcaagactggcatggctaagtcaattcaccacgcaagagtgctcatcaggcaaaggcatatcanggttggaaggcaagtggtgaatgttgcttcattcatggtgagagtggactctcagaagcacattgacttctctctaaccagtccttttggtggcgggcgtccaggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggcggtgatggtgaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15749" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15418" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="86" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="468" r_length="382" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.375" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13221" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="637" r_length="169" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E449111" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAA</genome_strand>
        <mrna_strand>AAACATGGTGCACGTCTCCTTTTACCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAACCTTTAAGAAGCCTCGACGTCCCTATGAGAAGGAGAGGTTGGATGCAGAGTTGAAGCTTGTTGGAGAGTATGGACTGCGGTGCAAAAGGGAGTTGTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCAAGAATGCTTCTGACCCTTGATGAGAAAGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGATATGGATTGTTGGATGAGAGCCAGAACAAGCTCGATTATGTCTTGGCACTCACTGTTGAGAACTTCCTTGAACGTCGTCTGCAAACCCTTGTGTTCAAGACTGGCATGGCTAAGTCAATTCACCACGCAAGAGTGCTCATCAGGCAAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAAGGCAAGTGGTGAATGTTGCTTCATTCATGGTGAGAGTGGACTCTCAGAAGCACATTGACTTCTCTCTAACCAGTCCTTTTGGTGGCGGGCGTCCAGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGCGGTGATGGTGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452667" ref_strand="+" ref_description="SGN-E452667 [cSTS-17-F5]">
      <seq>caaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtnctggaagagtgaagcgaaagaaccaaaagtccgctgccaanaaggctgctggtggtgatggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15750" stop="12922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15418" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="415" r_length="382" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13222" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="583" r_length="168" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E452667" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGA</genome_strand>
        <mrna_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTNCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCCGCTGCCAANAAGGCTGCTGGTGGTGATGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290231" ref_strand="+" ref_description="SGN-E290231 [cLET-5-M2]">
      <seq>aaactcgagactagttctctcgccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaagctgctggtggtgatggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14492" stop="12922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14191" g_stop="14054" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="160" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13222" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="328" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E290231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14191" e_stop="14054"/>
          <exon e_start="13389" e_stop="13222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGA</genome_strand>
        <mrna_strand>CCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAAGCTGCTGGTGGTGATGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424168" ref_strand="+" ref_description="SGN-E424168 [STM-43-K17]">
      <seq>aaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtacgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcaaagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaanaaggctgctggtggtgatggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15749" stop="12924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15418" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="414" r_length="382" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13224" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="580" r_length="166" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E424168" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGAT</genome_strand>
        <mrna_strand>AAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTACGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAANAAGGCTGCTGGTGGTGATGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342752" ref_strand="+" ref_description="SGN-E342752 [cTOF-7-C8]">
      <seq>tgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtnctggaagagtgaagcgaaagaacccaaagtctgctgccaagaaggctgcnntgtgtgatggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15741" stop="12940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15441" g_stop="15418" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="406" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13224" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="572" r_length="166" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E342752" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15441" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGAT</genome_strand>
        <mrna_strand>TGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTNCTGGAAGAGTGAAGCGAAAGAACCCAAAGTCTGCTGCCAAGAAGGCTGCNNTGTGTGATGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460411" ref_strand="+" ref_description="SGN-E460411 [cPRO-30-P24]">
      <seq>gttcatttcagcaggtcgccgattgaggacggcgccgtcaaccggtaaacatggtgcacgtctccttttaccgcaactatgggaaaacctttaagaagcctcgacgtccctatgagaaggagaggttggatgcagagttgaagcttgttggagagtatggactgcggtgcaaaagggagttgtggagagttcagtatgctttgagccgtatcaggaatgctgcaagaatgcttctgacccttgatgagaaagatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacagatatggattgttggatgagagccagaacaagctcgattatgtcttggcactcactgttgagaacttccttgaacgtcgtctgcaaacccttgtgttcaagactggcatggctaagtcaattcaccacgcaagagtgctcatcaggcaaaggcatatcagggttggaaggcaagtggtgaatgttgcttcattcatggtgagagtggactctcagaagcacattgacttctctctaaccagtccttttggtggcgggcgtccaggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggctgctggcggtgatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15749" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15449" g_stop="15418" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="78" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="460" r_length="382" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.375" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13225" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="625" r_length="165" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E460411" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15449" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGA</genome_strand>
        <mrna_strand>AAACATGGTGCACGTCTCCTTTTACCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAAACCTTTAAGAAGCCTCGACGTCCCTATGAGAAGGAGAGGTTGGATGCAGAGTTGAAGCTTGTTGGAGAGTATGGACTGCGGTGCAAAAGGGAGTTGTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCAAGAATGCTTCTGACCCTTGATGAGAAAGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGATATGGATTGTTGGATGAGAGCCAGAACAAGCTCGATTATGTCTTGGCACTCACTGTTGAGAACTTCCTTGAACGTCGTCTGCAAACCCTTGTGTTCAAGACTGGCATGGCTAAGTCAATTCACCACGCAAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGAAGGCAAGTGGTGAATGTTGCTTCATTCATGGTGAGAGTGGACTCTCAGAAGCACATTGACTTCTCTCTAACCAGTCCTTTTGGTGGCGGGCGTCCAGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGCGGTGATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237679" ref_strand="+" ref_description="SGN-E237679 [cLED-19-M16]">
      <seq>gagttcagtatgccttgagccgtatcagaaatgccgcaagaatgcttctgaccttggatgagaaagatccacgccgtatttttgaaggtgaagcactcttgagaagaatgaacagatatggattattggatgagagccagaacaagcttgattatgtcttggccctcactgtggagaactttcttgagcgtcgtctccaaaccctcgtcttcaagactggcatggctaagtcaatccaccatgctagagtgctcattcgacaaaggcatatcagagttggtaggcaggtggtgaacgttgcttctttcatggtgagagtggactcccagaagcacattgacttctctctcaccagtcctttcggtggtggtcgccctggaagagtgaagcgaaagaaccagaaatctgctgcaaagaaagcagctggtggtgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14627" stop="12926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14327" g_stop="14054" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13226" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="438" r_length="164" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E237679" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14327" e_stop="14054"/>
          <exon e_start="13389" e_stop="13226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTG</genome_strand>
        <mrna_strand>GAGTTCAGTATGCCTTGAGCCGTATCAGAAATGCCGCAAGAATGCTTCTGACCTTGGATGAGAAAGATCCACGCCGTATTTTTGAAGGTGAAGCACTCTTGAGAAGAATGAACAGATATGGATTATTGGATGAGAGCCAGAACAAGCTTGATTATGTCTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACCCTCGTCTTCAAGACTGGCATGGCTAAGTCAATCCACCATGCTAGAGTGCTCATTCGACAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAACGTTGCTTCTTTCATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACCAGTCCTTTCGGTGGTGGTCGCCCTGGAAGAGTGAAGCGAAAGAACCAGAAATCTGCTGCAAAGAAAGCAGCTGGTGGTGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591190" ref_strand="+" ref_description="SGN-E591190 [44897]">
      <seq>ggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaaactgtaggagagtatggactaaggtgcaagagggagcttggagagtcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaatccatcatgccagagtgctcatcaggcaaaggcatatcagagtcggaaggcaggtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcactagtccgtttggtggtggccgtcctggaagagtgaagcgaaagaaccaaaagtctgctgccaagaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15743" stop="12942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15443" g_stop="15418" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="405" r_length="379" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13242" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="553" r_length="148" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E591190" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15443" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCT</genome_strand>
        <mrna_strand>GGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAAC-TGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGC-TTGGAGAG-TCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATCCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGGAAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCGTTTGGTGGTGGCCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353345" ref_strand="+" ref_description="SGN-E353345 [cTOS-15-A14]">
      <seq>acgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcanagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctggaagagtgaagcgaaagaaccaaaagtctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="12954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15455" g_stop="15418" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="420" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13254" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="556" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E353345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15455" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCT</genome_strand>
        <mrna_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265286" ref_strand="+" ref_description="SGN-E265286 [cLEI-9-K2]">
      <seq>gcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggcggtgggcgtcctgtaagagtgaagcgaaagaaccaaaagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15740" stop="12955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15440" g_stop="15418" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="405" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13255" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="540" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E265286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15440" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGC</genome_strand>
        <mrna_strand>GCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGTAAGAGTGAAGCGAAAGAACCAAAAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307192" ref_strand="+" ref_description="SGN-E307192 [cLEY-15-D7]">
      <seq>aaaccatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcanagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctcactagtccatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15749" stop="12999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15450" g_stop="15418" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="415" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13299" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="506" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E307192" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15450" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGC</genome_strand>
        <mrna_strand>AAACCATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566572" ref_strand="+" ref_description="SGN-E566572 [5011]">
      <seq>tcgcaactatgggaagacctttaagaagccacggaaggccctacgagaaggagcgattggatgcagaattgaaacttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggattcacgtcgtatttttgaaggtgaagctctcctgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtcttcaagactggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagtcggaaggcacgtggtgaatgttgcttcttttatggtgagagtggactcccagaagcacattgacttctctctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14735" stop="13011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="391" r_length="383" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13389" g_stop="13311" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="470" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E566572" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAGACCTTTAAGAAGCCAC-GAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACT</genome_strand>
        <mrna_strand>ATGGGAAGACCTTTAAGAAGCCACGGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAACTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATTCACGTCGTATTTTTGAAGGTGAAGCTCTCCTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTCAAGACTGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGGAAGGCACGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279146" ref_strand="-" ref_description="SGN-E279146 [cLEL-4-J9](-)">
      <seq>gcacgagcaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="13014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15457" g_stop="15418" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="422" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13314" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="498" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E279146" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15457" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTC</genome_strand>
        <mrna_strand>GCACGAGCAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487794" ref_strand="+" ref_description="SGN-E487794 [cSTE-26-J3]">
      <seq>acatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccctacgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatggattgttggatgagagccaaaacaagcttgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacacttgtctttcagactggcatggctaagtncattcatcatgccagagtgctcatcanggcaaggcatatcanagttggtaggcaggtggtgaatgttgcttnctttatggtgagagtggactcccagaagcacattgacttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15747" stop="13015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15447" g_stop="15418" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="412" r_length="382" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.375" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13315" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="487" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E487794" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15447" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCT</genome_strand>
        <mrna_strand>ACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCCTACGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGATTGTTGGATGAGAGCCAAAACAAGCTTGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTTGTCTTTCAGACTGGCATGGCTAAGTNCATTCATCATGCCAGAGTGCTCATCANGGCAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTNCTTTATGGTGAGAGTGGACTCCCAGAAGCACATTGACTTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245383" ref_strand="+" ref_description="SGN-E245383 [cLEF-53-L12]">
      <seq>cgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcanagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacattgacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15754" stop="13018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="15418" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="419" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13318" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="491" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E245383" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTC</genome_strand>
        <mrna_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247664" ref_strand="+" ref_description="SGN-E247664 [cLEF-42-E9]">
      <seq>cgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaaggggcgaatgccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaaaggcatatcagagttggtaggcaggtggtgaatgttgcttcttttatggtgagagtagactcccagaagcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15754" stop="13027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15454" g_stop="15418" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="419" r_length="382" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13327" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="482" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E247664" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15454" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACAT</genome_strand>
        <mrna_strand>CGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGGGGCGAATGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396517" ref_strand="+" ref_description="SGN-E396517 [TUS-24-E16]">
      <seq>acgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgctcatcaggcaggggggggggggagttggtacgcaggtggtgaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="13064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15455" g_stop="15418" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14054" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="420" r_length="382" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664">
            <donor d_prob="0.991" d_score="0.82"/>
            <acceptor a_prob="0.375" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13389" g_stop="13364" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="446" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E396517" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15455" e_stop="15418"/>
          <exon e_start="14435" e_stop="14054"/>
          <exon e_start="13389" e_stop="13364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAGGTACCATTAGTTTTTTTATTGGCAAAAGGAAATAAATAATTTCAGTCATGCTTGGTTTTGTTGTTTATCAATTTTTTCCACTGTTGTGCATATATCTCTGCTGGATTTGTTAAGAACATAATTATCAATATGGCATTTTTGGGTTCAATCACTTCTTCCTGAATTATTGGCGTTGATTTTACACCATATGTTTAGAAGATCCAGTAAATGCTACAAAGATCCATCAACGATTAAAGACAAGTTTTTTATCTGGCATTCTCTAGTAGATCAAAGTTCCATGTTATGAAGATTGTTTCATCAATCAAAATTTTCTTTTCTTGTCAATCAATATTAGCCGGGAAAGGAACACTTTATTTTTATTCTGGAGTTTGCTTTTTATATAATGATTGGCATTTCCGTGCAAATAGGATTCTTATTAAATGTAGTGGGTTTATGACAACATACTAGACATGGCATGAAAATGATATCTGCTGCATGATCATTCATTACTTTTAAATATATATATCAGAAGAAAGAAGTCTGCTTCACATAGTTTCATTTAGAGTTTAGACCAAGCAGAATCACATATATACAGAACCCCAGGGTAGTAATGTACCTACTTTTTATTTGGTGCGCGGGAATTGGGATCTCTTAGTTTCTGATTCACAATATCTTTGCACTGCAGAGTTGGTAGGCAGGTGGTGAATGTTG</genome_strand>
        <mrna_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAGGGGGGGGGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTACGCAGGTGGTGAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353433" ref_strand="+" ref_description="SGN-E353433 [cTOS-15-J2]">
      <seq>acgaacaaacatggtgcacgtctctttttatcgcaactatgggaagacctttaagaagccacgaaggccttatgagaaggagcgattggatgcagaattgaagcttgtaggagagtatggactaaggtgcaagagggagctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtcttggcactcaccgtggagaactttcttgagcgtcgtctccaaacactagtgttcaagaccggcatggctaagtcaattcatcatgccagagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="15755" stop="13775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15455" g_stop="15418" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14435" g_stop="14075" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="399" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E353433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15455" e_stop="15418"/>
          <exon e_start="14435" e_stop="14075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACTGTGAGTATTTTTTTCTCCTTTATGTATGATCTCTCATTATGTATCTGTTTGATTAAATGCAAATTAGTGATTTTATGGGTGAATTTAGTAGGATTATGGATGTATGCAGCATTTGAGGTTAATTTATGTTGCTAATAGTCTGATTATATTGTAAAGTTTCAGTTTTTTTAGCTAATTGCACCATTGTTGTTGAGATTTGAGTACTTTGTAAGTTTCCTGGTTTGTGTAAGTTTATTTTTTTCATTAATGGAGAACCTTGAAGGTTATAATTGTATGATCAGTTGGTTTGGAATGTAAATTTCAAATTTTTTTGCTTGAATTTGAAATTGGGTCACTTCTCATTTTTCGTTTTTTTTAGTGCGATTGACGACTTTTATGTAACCATTGGCCTAAGAGTGAGGTTATGGAGCCTCTGTGTTTTTAGGGACTCTTTATTAATCGTAGAGTTAAATTATGTGCTTCATTTGTCCCAATTTATGTGACATTGTTTGGACTAGGGACTCTTTATTTTACAGTAGAGTTAAATTATGTGCTTTATTCGTCCCAATTTATGTGACATCGTTTGTATCAGGGACTCTTTATTTACAGTAGAGTTAAATTATGTGCTCTGAAAAAGTTGAAGACTTCAGAGATTTGTGTTCTAAAATGAACTATAGCTAAAGTTTAGTTGATTTAGCTGTAGAAAGGTGTTTTTTTGGGTATGGACTGAAAATGGAAGTATGCCTCATGAATTGTAATGGAGGGAGAAGCATTTTTAGGGTTGTTTAGTTGACGACTTCTGATGTGTGATTTAGTCATTTAGTTGATTGATTGATGACGTCTGTTATAGTTATACGCAGTGACCTAACATTAATTGGTTTTTATGTCTAATAGTCTGTATTTTTCGATTTGGCTGTGATATGCTTAGCTCAAAATTCAGGCTGTGTATAGTATATTCACATTGTAATTAAGTATATCTTACACATTGTGATACGGAATTCAGATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCT</genome_strand>
        <mrna_strand>ACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319879" ref_strand="+" ref_description="SGN-E319879 [cTOB-12-O3]">
      <seq>agctttggagagttcagtatgctttgagccgtatcaggaatgctgctagaatgcttctgacattggatgagaaggatccacgtcgtatttttgaaggtgaagctctcttgaggaggatgaacaggtatgggttgttggatgagagccaaaacaagctcgattatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="14636" stop="13868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14336" g_stop="14168" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E319879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14336" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTT</genome_strand>
        <mrna_strand>AGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302479" ref_strand="+" ref_description="SGN-E302479 [cLEW-27-L2]">
      <seq>ttaggcatcacaccgatattgccccttccgggacccccgttggatgggaatctgggaccaacacctctagctcaggtggtagaggaaccaaatgatgttaagatggaagagaatgaagaggaaaacaataaggacaaggttccagcatctgttgcaacacatacgagaactattggtatcatttatccccctcctgatattaggagtattgttgacaagacttcacagtttgtggcgaagaatggtccggaatttgagaagaggattgttctaaataacgctggcaatgcaaaattcaacttcctgaatgcttctgatccttaccatgcctattatcagcaccgtttggctgaagctcgcgcacagaatcagggttctggagagcagcctactcagccagaagacaaagaagcaacccctgctcctaccgctgatgatgctgaggcaactgcaaaacctgacccatcagctcaatttagacctgtcagaaaggttcttgagccacctgaggcagagcaatatactgttcgactccctgaaaggatcacaggtgaagaaatggatatcataaagctgacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="17951" stop="19140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18252" g_stop="18840" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E302479" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18252" e_stop="18840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTACCACAACGATATTGCCCCTTCCGGCACCGCCGTTGGATGGGAATCTGGGACCAACACCTCCTGCTCAGGTGGTAGAGGAACCAGAGGATGATAGGATGGAAGAGAATGAAGAGGACAACAATAAAGGCAACAAGGTTCCAACATCTGTTGCTACACATACTAGAACTATTGGTATCATTTACCCTCCTCCAGATATTAGGAGTATTGTTGATAAGACTTCGCAGTTTGTTGCGAAGAATGGTCCGGAATTTGAGAAGAGAATTGTTCTAAATAATGCTGGCAATGCGAAATTTAACTTCTTGAATGCCTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGATGCTCGCGCACAGAATCAGGCTTCTGGAGAGCAGCCTACTCAGCCAGATGACAATGAAGCAGCCCCTGCTCCTCCTACTGCTGATGGTGCTGAGGCAACTGCTAAACCTGATCCGTCAGCTCAGTTTAGACCTGTAAGAAAGGTTCTCGAGCCACCTGAGGCAGAGCAATATACTGTAAGACTCCCTGAAGGGATCACAGGTGAAGAACTGGATATTATTAAGCTAACAGCAC</genome_strand>
        <mrna_strand>TTAGGCATCACACCGATATTGCCCCTTCCGGGACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAAT-AAGG--ACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTG---CTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571616" ref_strand="+" ref_description="SGN-E571616 [15085]">
      <seq>gaacaggagagggtgcagatggctatgattgattggcatgattttgttgttgttgagactatagattttgctgatgacgaggatcaggatttacctccacctatgaccctcgaggaggttataaggaggagcaagatgcctacattggaggaagaagagtatgttgagcctggaaaagaggtggaaatggagatggatgaagaagaggtgcagctagttgaagaaggtatgcgagctgcgactcttgaagagaatggtggtatcaagagtgctgaagccatggcaattccagtggaacaggacccaccaatgcggattgtgaagaactggaagaggcctgaagagaggatcctggcagaaagggacccaactaagtatgttgtctcacctataaccggtgagctaatacctattaatgagatgtctgaacatatgaggatctctctcattgatccaaagtataaggaacagaaggacaggatgtttgcgaagattaaggagacgactcttggcacaggatgatgagatttctaggaacattgttggacttgcaagaacccgtccggatatatttggtaccacggaagaagaagtttcaaatgcggtcaaggctgagattgagaaacaagacggaagagccgaaagcaaggtcatatgggaatggtcacacagggtaggcattgggttcgcaactgccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="18819" stop="20107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19119" g_stop="19785" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E571616" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19119" e_stop="19785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCCGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTAGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGATATCAAGAGTGCTGAAACCATGACAATTTCAGAGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTT-GCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAA-AAGAAGGAAGAGCCG-AAGCAA-GTCATATGGG-ATGGTCACACAG</genome_strand>
        <mrna_strand>GAACAGGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCTGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTCGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGGTATCAAGAGTGCTGAAGCCATGGCAATTCCAGTGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCACCTATAACCGGTGAGCTAATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTATAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGGCACAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACGGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAACAAGACGGAAGAGCCGAAAGCAAGGTCATATGGGAATGGTCACACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605176" ref_strand="+" ref_description="SGN-E605176 [21089]">
      <seq>tccccgggctgaggatatattggtacacggacgggtcttgcaagtcaacaatgttcctggaaatctcatcatcctgtgcaagagtcgtctccttaatcttcgcaaacatcctgtccttctgttccttatactttggatcaatgagagagatcctcatatgttcagacatctcattaataggtattagctcaccggttataggtgagacaacatacttagttgggtccctttctgccaggatcctctcttcaggcctcttccagttcttcacaatccgcattggtgggtcctgttccactggaattgccatggcttcagcactcttgataccaccattctcttcaagagtcgcagctcgcataccttcttcaactagctgcacctcttcttcatccatctccatttccacctcttttccaggctcaacatactcttcttcctccaatgtaggcatcttgctcctccttataacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19986" stop="18933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19682" g_stop="19233" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="475" r_length="448" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E605176" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19682" e_stop="19233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACGGGTTCTTGCAAGTCCAACAATGTTCCTAGAAATCTCATCATCCTGCGCAAGAGTCGTCTCCTTAATCTTCGCAAACATCCTGTCCTTCTGTTCCTTGTACTTTGGATCAATGAGAGAGATCCTCATATGTTCAGACATCTCATTAATAGGTATGAGCTCACCGGTTATAGGAGAGACAACATACTTAGTTGGGTCCCTTTCTGCCAGGATCCTCTCTTCAGGCCTCTTCCAGTTCTTCACAATCCGCATTGGTGGGTCCTGTTCCTCTGAAATTGTCATGGTTTCAGCACTCTTGATATCACCATTCTCTTCAAGAGTCGCAGCTCGCATACCTTCTTCAACTAGCTGCACCTCTTCTTCATCCATCTCCATTTCCACCTCTTTTCCAGGCTCAACATACTCTTCTTCCTCCAATGTAGGCATCTTGCTCCTCCTTATAACCTC</genome_strand>
        <mrna_strand>CGGACGGG-TCTTGCAAGTC-AACAATGTTCCTGGAAATCTCATCATCCTGTGCAAGAGTCGTCTCCTTAATCTTCGCAAACATCCTGTCCTTCTGTTCCTTATACTTTGGATCAATGAGAGAGATCCTCATATGTTCAGACATCTCATTAATAGGTATTAGCTCACCGGTTATAGGTGAGACAACATACTTAGTTGGGTCCCTTTCTGCCAGGATCCTCTCTTCAGGCCTCTTCCAGTTCTTCACAATCCGCATTGGTGGGTCCTGTTCCACTGGAATTGCCATGGCTTCAGCACTCTTGATACCACCATTCTCTTCAAGAGTCGCAGCTCGCATACCTTCTTCAACTAGCTGCACCTCTTCTTCATCCATCTCCATTTCCACCTCTTTTCCAGGCTCAACATACTCTTCTTCCTCCAATGTAGGCATCTTGCTCCTCCTTATAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391836" ref_strand="+" ref_description="SGN-E391836 [TUS-24-N23]">
      <seq>cctgaatagaggatcctggcttatagggatccaactaagtatgttgtctctcctataaccggtgagctcatacctattaatgagatgtctgaacatatgaagatctctctcattgatccaaagtacaaggaacataaggacaggatgtttgcgaagattaaggagacgactcttgcgcaggatgatgagatttctaggaacattgttggacttgcatgaacccgtccggatatatttggtacctcaaaagaaaaattttcaaatgcggtcaaggctgagattgaaaaaaagaacgaagagccgaaactagtcatatgggatggtcacacatgtagcattggtcccactgcgaaccatgcaatgtctcagaacagtgatgatcaaaatgatgctgcaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19155" stop="20157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19455" g_stop="19856" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E391836" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19455" e_stop="19856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGAT</genome_strand>
        <mrna_strand>CCTGAATAGAGGATCCTGGCTTATAGGGATCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAAGATCTCTCTCATTGATCCAAAGTACAAGGAACATAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCATGAACCCGTCCGGATATATTTGGTACCTCAAAAGAAAAATTTTCAAATGCGGTCAAGGCTGAGATTGAAAAAAAGAACGAAGAGCCGAAACTAGTCATATGGGATGGTCACACATGTAGCATTGGTCCCACTGCGAACCATGCAATGTCTCAGAACAGTGATGATCAAAATGATGCTGCAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246550" ref_strand="+" ref_description="SGN-E246550 [cLEF-45-O12]">
      <seq>ctgaagagagggatctggactaaagggacccaactaagtatgttgtctgtcctataaccggtgagctcatacctattaatgagatgtctgaacatatgaggatctctctcattgatccaaagtacaaggaacagaaggacaggatgtttgcgaagattaaggagacgactcttgcgcaggatgatgagatttctaggaacattgttggacttgcaagaacccgtccggatatatttggtaccacagaagaagaagtttcaaatgcggtcaaggctgagattgagaaaaagaaggaagagccgaagcaagtcatatgggatggtcacacaggtagcattggtcgcactgcgaaccaggcaatgtctcagaacagtgatgatcagaatgatgctgcaaatgatgcaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19177" stop="20165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19456" g_stop="19865" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E246550" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19456" e_stop="19865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAAC</genome_strand>
        <mrna_strand>CTGAAGAGAGGGATCTGGACTAAAGGGACCCAACTAAGTATGTTGTCTGTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727154" ref_strand="+" ref_description="SGN-E727154 [LA13DE11]">
      <seq>agtcgactcttgcgcaggatgatgagatttctaggaacattgttggacttgcaagaacccgtccggatatatttggtaccacagaagaagaagtttcaaatgcggtcaaggctgagattgagaaaaagaaggaagagccgaagcaagtcatatgggatggtcacacaggtagcattggtcgcactgcgaaccaggcaatgtctcagaacagtgatgatcagaatgatgctgcaaatgatgcaagaaaccttcctggaccgcaggctcctccacctcccagacctggttttccatctattaggccactacctccagtattctactcctggggttgctgctccgcctccacctcgacctcctatggttaacatgattcctcaggttcggcccccacctcctcccatgccacagatgccaggtcagcaaaatctcatggtgaatcgccctccaatgcctccatcgatgggtatgaattctcttaaccttcccattccaccacctcctggatcacaatttactcctttgggagcacctcgaccctttgttccccacccgatgtcccagcccggaatgtctatggtcccaccgcctcctatgccccaaggaatgccgccaccccctccaccagaggaagcgcctcctctccctgaagagccagagccaaagaggcaaaagcttgaagagtctattctcattcctgaagaccagtttttggctcagcactcgggacctgcaagggatcatatatctgtgccgaataccgatgaagggaatctcaaaggacaaattctggaaattacagtgcaatctctgtccgaaaccatttgcagtctaaagagaagatttctggggagattcagctgcctgcaaacaaacagaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19318" stop="20981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19618" g_stop="19929" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.87"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19980" g_stop="20390" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="726" r_length="414" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20523" g_stop="20681" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="884" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E727154" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19618" e_stop="19929"/>
          <exon e_start="19980" e_stop="20390"/>
          <exon e_start="20523" e_stop="20681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTCCACCACCTGGGCTTGCACTGAATATTCCTAGGCCTCCTAATACAGTCCAG---TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCGGTATGGATAGCTTTTTTTTTTCTTTTTCCCCCCAACTTTTACATAATTGTCTGGGTCTCTGAGAATTTTGCTTAATGCCTCAATTTTCTTACATTCATGGAAATTATGTTGCCTGCTGGGATTTTATTGCAGGGACCTGCAA-GGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTG</genome_strand>
        <mrna_strand>AGTCGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC..................................................CAGTATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG....................................................................................................................................GGACCTGCAAGGGATC-ATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTTGCAGTCT-AAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727838" ref_strand="+" ref_description="SGN-E727838 [LA15DE11]">
      <seq>tgacgactcttgcgcatgatgatgacatttctaggaaccttgttggacttgccagaacccctccggatatatttggtaccacataagatgaagtttctgatgcggtcaaggctgagattgataacaagaacgaagagccgaagctggtcatatgggatggtctcacaggtagcattggtcgcactgctaaccatgcgatgtctcagaacagtgatgatcaaaatgatgctgcgaatgatgcaagaaacctttctggaccggatgctcctccacctcccagagctgggtttccatctattatgccacgtacctccagtattctactcctggggttgctgctccggctccacctcgacctcctatggttaacgtgattcctcaggttcggcccccacctcctcccatgccacagatgccaggtcagcaaaatctcatggtgaatcgccctccaatgcctccatcgatgggtatgaattctcttaaccttgccattccgcctgcttctggatcacatttctctccgttgggagcacctcgaccctgtgttccccacccgatgtctcaacctggaatgtctatggtcccaccgactcctatgctcgatggaatgccgccaccccctccaccagaggaagcgcctcctctccctgattagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19319" stop="20622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19618" g_stop="19929" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19980" g_stop="20322" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="659" r_length="346" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E727838" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19618" e_stop="19929"/>
          <exon e_start="19980" e_stop="20322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCAC-TACCTCCACCACCTGGGCTTGCACTGAATATTCCTAGGCCTCCTAATACAGTCCAG---TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAG</genome_strand>
        <mrna_strand>TGACGACTCTTGCGCATGATGATGACATTTCTAGGAACCTTGTTGGACTTGCCAGAACCCCTCCGGATATATTTGGTACCACATAAGATGAAGTTTCTGATGCGGTCAAGGCTGAGATTGATAACAAGAACGAAGAGCCGAAGCTGGTCATATGGGATGGTCTCACAGGTAGCATTGGTCGCACTGCTAACCATGCGATGTCTCAGAACAGTGATGATCAAAATGATGCTGCGAATGATGCAAGAAACCTTTCTGGACCGGATGCTCCTCCACCTCCCAGAGCTGGGTTTCCATCTATTATGCCACGTACCTC..................................................CAGTATTCTACTCCTGGGGTTGCTGCTCCGGCTCCACCTCGACCTCCTATGGTTAACGTGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTGCCATTCCGCCTGCTTCTGGATCACATTTCTCTCCGTTGGGAGCACCTCGACCCTGTGTTCCCCACCCGATGTCTCAACCTGGAATGTCTATGGTCCCACCGACTCCTATGCTCGATGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGATTAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266354" ref_strand="+" ref_description="SGN-E266354 [cLEI-3-K1]">
      <seq>tcatggtcaatcgtcccccaatgcctccatcaatggctatgagtgcgcatacccgtactattgcaccaccttctggatcacagtttacacctatgggagcacctcggccctttgttccccacccgatgtcccagccgggaatgtctatggtcccgcctcctcctatgccccaaggaatgccaccacctcctccaccagaagaagctcctcctctccctgaagagccagagccgaagaggcaaaagcttgacgagtctgttctcattcctgaagaccagtttttggctcagcattcgggacctgcaaggatcaatgtatctgtgccgaatactgatgaagggaatctcaaaggacaagttctggaaatcactgtgcaatctctgaccgaaaccattgcaagtctgaaagagaagatttctggggagatccagcttcctgcgaacaaacaaaagctgagtggaaaggctggttttctcaaggacaacttgtctcttgcatactataatgttgcttctggagaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19795" stop="21052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20095" g_stop="20390" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20523" g_stop="20752" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="526" r_length="230" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E266354" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20095" e_stop="20390"/>
          <exon e_start="20523" e_stop="20752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCGGTATGGATAGCTTTTTTTTTTCTTTTTCCCCCCAACTTTTACATAATTGTCTGGGTCTCTGAGAATTTTGCTTAATGCCTCAATTTTCTTACATTCATGGAAATTATGTTGCCTGCTGGGATTTTATTGCAGGGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACT</genome_strand>
        <mrna_strand>TCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTGCGCATACCCGTACTATTGCACCACCTTCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG....................................................................................................................................GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573353" ref_strand="+" ref_description="SGN-E573353 [32650]">
      <seq>ggaggcccctcctctccctgaagagccagagccgaagaggcaaaagcttgatgagtctattctcattcctgaagaccagttcttggctcagcactcgggacctgcaaggatcaatatatctgtgccgaataccgatgaagggaatctcaaaggacaagttctggaaatcacagtgcaatctctgtccgaaaccattgccagtctaaaagagaagatttctggggagatccagctgcccgcgaacaaacaaaaactgagtggaaaggctggttttctcaaggacaacttgtctcttgcgtactataatgttgcatctggagaaacactcggtctctcactaagagaacgtggtgggagaaagagatgaatggggagttatttggcatggccttcaaagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcatgggttgtgtttatgttactaatttgtgtttgtctcacgacgtgcacgtgctccaccctaactacagctcagttgttattttgttgtatcttccaagtccaaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaagcacacctgcctcttttgtgagtctgctgtatggggggagtggctaaggtttctctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="19994" stop="21666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20294" g_stop="20390" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20523" g_stop="20822" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="397" r_length="300" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20823" i_stop="20989" i_length="167">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.202" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20990" g_stop="21179" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="585" r_length="188" r_score="0.916"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21180" i_stop="21279" i_length="100">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21280" g_stop="21351" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="657" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E573353" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20294" e_stop="20390"/>
          <exon e_start="20523" e_stop="20822"/>
          <exon e_start="20990" e_stop="21179"/>
          <exon e_start="21280" e_stop="21351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCGGTATGGATAGCTTTTTTTTTTCTTTTTCCCCCCAACTTTTACATAATTGTCTGGGTCTCTGAGAATTTTGCTTAATGCCTCAATTTTCTTACATTCATGGAAATTATGTTGCCTGCTGGGATTTTATTGCAGGGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG</genome_strand>
        <mrna_strand>GGAGGCCCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGATGAGTCTATTCTCATTCCTGAAGACCAGTTCTTGGCTCAGCACTCG....................................................................................................................................GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATCCAGCTGCCCGCGAACAAACAAAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTCGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGCCTTCAAAG.......................................................................................................................................................................ATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCA-TGGGTTGTGTTTATGTTACTAA-TTTGTGTTTGTCTCACGACGTGCACGTGCTCCACCCTAACTACAGCTCAGTTGTTATTTTGTTGTATCTTCCAAGTCCAAG....................................................................................................GACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAAGCACACCTGCCTCTTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202719" ref_strand="+" ref_description="SGN-E202719 [cLEB-1-E7]">
      <seq>gcacgagctcttgcgtactataatgttgcatctggagaaacacttggtctctcactaagagaacgtggtgggagaaagagatgaatggggagttatttggcatggtcttcaaaggtttattttgctactgttcggcatatctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatttaatcatctttatttttcaagctgatggctgagtatctactacagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcacacatttttgtttatgttactaattttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttattttttttctatcttctgagtccaagccaccttagaacttttctgatgtcttcttggcaaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20410" stop="21519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20708" g_stop="21219" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E202719" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20708" e_stop="21219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTA-TTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTT</genome_strand>
        <mrna_strand>GCACGAG-CTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202797" ref_strand="+" ref_description="SGN-E202797 [cLEB-1-E11]">
      <seq>gcacgagctcttgcgtactataatgttgcatctggagaaacacttggtctctcactaagagaacgtggtgggagaaagagatgaatggggagttatttggcatggtcttcaaaggtttattttgctactgttcggcatatctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatataatcatctttatttttcaagctgatggctgagtctctactacagattttggcatgttggtgatcatccatgaggacaacaggaagcttactagttctatgtctattaagatgccatgactgcgggttcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20410" stop="21378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20708" g_stop="21078" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E202797" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20708" e_stop="21078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACA</genome_strand>
        <mrna_strand>GCACGAG-CTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATATAATCATCTTTATTTTTCAAGCTGATGGCTGAGTCTCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGCTTACTAGTTCTATGTCTATTAAGATGCCATGACTGCGGGTTCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740326" ref_strand="+" ref_description="SGN-E740326 [LC20DH05]">
      <seq>atctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatttaatcatctttatttttcaagctgatggctgagtatctactacagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcacacatttttgtttatgttactaattttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttatttttttctatcttctgagtccaagccaccttagaacttttctgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgattcattcttttggtttgttttgatggagtctgctgtatccccgtggctcctctgatgtgcctttattttatcaacacagctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20547" stop="74091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20847" g_stop="21351" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.228" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21438" g_stop="21599" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="667" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21896" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="870" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21897" i_stop="22673" i_length="777">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22674" g_stop="22692" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="889" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22693" i_stop="23426" i_length="734">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23427" g_stop="23440" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="903" r_length="14" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E740326" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20847" e_stop="21351"/>
          <exon e_start="21438" e_stop="21599"/>
          <exon e_start="21694" e_stop="21896"/>
          <exon e_start="22674" e_stop="22692"/>
          <exon e_start="23427" e_stop="23440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTACTTATTCCACATGCTGGCTAGAACTAGCCAAATATTCATCACACCAACACACACATACTTATAATGTGTATCTACATAGTCACACATACATTATATTATTTATTATTCCACATGCTAGCTAGAACTAGCCAAATTATTCATCACACATACACACATTATTTCTTGAGAAGGTGACTTTCTATATCCTTGGTCATGGCAAGGATAACACCCAAGTGAAGGAGGGGTTCTGGGGTATCTTCAGTTTTCTTTTCGTAGTCAATTGTCCAAGTAGTCCACTGGCCATCACAAGATGTTGTAAAATTACAGTATTTATACAACTTCAATAAATCTCCTTCGATAACTTTCCATTTGATTAATTTCTGCTGAGGATCGGCAGCTTCAATTAAGTGCTTCATATACATTTCTTGTCCAGCTACAATCATATTATAAACAGAAAATACAAGAGATCGTTATCACTAGTTCAACTGTTCAATACCTTATGGAGAATTTAAACATTTACAAAATATTATTAGGTGAGAAAATTATATTTGTGATGTTATTACTGCTTTGATAAGTTTTTTTTTTAATTATTATTAAAGATTAGTGAGTGATGAGTAGTTATATTCCTTCATTGAAAAGCAAAAGGATTTACTTGTACTATATTTATGAAATTTTTACACCATCGAATATGTTTTCATGAAGATTTTTCTCTTAAAAATAAACTTTCTTATTAGTTATTGTCAAATATTTTTAAATAGAGAAAATTTATGCAAGTAAATCATATTAAGAGAGAGAGATAGGGTACAAAAAAAGGTGAGTTACCTTCGTTGTATTTCCAACTAACAATCGAACCAGTCTTAACGCTTTCACCTTCGTGAATTCCAAAATGGACGATATTTTTAGGACTTATATTGGGTACCTGATTAGTATTAATGTGAAAAATATCGAAAAATGAGCCTTCTCCACACTTCATCTCCACTGAAGCAATCAACTTACCTTTTAAACCCATATTTTTTATTTTTTTAAGAATAGCAATATGTTGTGAAAGAAAGTGGTGAGAAAATATTTAGAACTTGTAGTCTTTATATAGATTTTAATTAAATGTGAAATGCTAGCTAGTAAAAACATTATCCACCACATATCTACGAGTTAATACCATTTTACACCTTAACCTATTTTTTTTAAAAATAATTTGTTACCTAACCTATTTTTTTTAAAAATAATTTGTTACCTAACTTTTTACTTTCATAGTAAAATTACCTTTAAAAAGAACTGACAAGTTATCGTACATATTCATTTAAAGTGTTATATGTGAAACTTTCAATGTTGTACGATAAAATAAACAAATATTTTTATAAGAACAAATAATTGTCAATGGCGAAATTAGAAATTTTATTTAAAATATTCAAAACTGAATATATATAACATAATTATAAACTTATTTACTTAATAGAACTTTTTATAAATATAATATAATTTTCATTGTAGCACATGCCTAATGCAGAAAATAAATCATATCTATTTGTTTAATTTTCTTTTCCTAATAGGGGTAGGGTTAGGC</genome_strand>
        <mrna_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGGGGGGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739472" ref_strand="+" ref_description="SGN-E739472 [LC17CD10]">
      <seq>atctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatttaatcatctttatttttcaagctgatggctgagtatctactacagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcacacatttttgtttatgttactaattttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttatttttttctatcttctgagtccaagccaccttagaacttttctgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgattcattcttttggtttgttttgatggagtctgctgtatccccgtggctcctctgatgtgcctttattttatcaacacagctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20547" stop="74090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20847" g_stop="21351" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.228" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21438" g_stop="21599" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="667" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21908" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="882" r_length="215" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E739472" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20847" e_stop="21351"/>
          <exon e_start="21438" e_stop="21599"/>
          <exon e_start="21694" e_stop="21908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTACTTATTCC</genome_strand>
        <mrna_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739247" ref_strand="+" ref_description="SGN-E739247 [LC16CF10]">
      <seq>atctaatccttgttatgagttttaagaattctctatacttctttcatgttatttgggagattatactggtcttgtactttagtttttctttctgcatttaatcatctttatttttcaagctgatggctgagtatctactacagattttggcatgttggtgatcatccatgaggacaacaggaagtttactagttctatgtctataaagatgccatgactgtgggttcacacatttttgtttatgttactaattttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttatttttttctatcttctgagtccaagccaccttagaacttttctgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgattcattcttttggtttgttttgatggagtctgctgtatccccgtggctcctctgatgtgcctttattttatcaacacagctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20547" stop="22197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20847" g_stop="21351" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.228" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21438" g_stop="21599" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="667" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21905" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="879" r_length="212" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E739247" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20847" e_stop="21351"/>
          <exon e_start="21438" e_stop="21599"/>
          <exon e_start="21694" e_stop="21905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTACTTAT</genome_strand>
        <mrna_strand>ATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392079" ref_strand="+" ref_description="SGN-E392079 [TUS-24-N23](-)">
      <seq>attttgtgtttgtctcaccacctgcagttgctccaccttaactacagctcagttgttattttttttctatcttctgagtccaagccaccttagaacttttttgatgtcttcttggcaaacatttcttataattttggaggtttcccttagcaattaacatctcaaattcttctgtggactttaggacctatttctgtagaagatgtgcttgtcgtggtgggagacgcttgtcccaatcacacctgcctcttttgtgctttatacccctgttaggagatgtgatgtgttctgcatttgttggttgtgttgcgaggtccaatctcgacaacaaaaagcaggctttcgaaggatgttgcagacgattgatacgtctttcttatgtaatagttggaaattccttattttctggcagataatgtgccatcgtagtattcttctgctatgattcttataagttattggttgatcagtttatatatgtttatgcttttgtgcatgatattagctctagtgacatatacataacatattcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="20797" stop="22197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21097" g_stop="21351" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21352" i_stop="21517" i_length="166">
            <donor d_prob="0.278" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21518" g_stop="21599" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="338" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21694" g_stop="21901" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="546" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E392079" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21097" e_stop="21351"/>
          <exon e_start="21518" e_stop="21599"/>
          <exon e_start="21694" e_stop="21901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTA-TTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTGGTGCGTTTTTTGGGGCACTCGAGTCTCTACATTCAAGTTACATGTAGTTTCCTTTTTTTTTTGACAGTGGTAACTGTTATATGTAGATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAGGTAGAGTTATTGCTCATTTCACTGGTGTGTTCATTTTAGTGTTTGATGAGATCATGTTGGCAGATATCAAGATTCAACACTTCACTTTTTGCAGGCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTAC</genome_strand>
        <mrna_strand>ATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTTTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG......................................................................................................................................................................CTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG..............................................................................................GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348301" ref_strand="+" ref_description="SGN-E348301 [cTOF-27-J21]">
      <seq>tattcttaaaaaaataaaaaatatgggtttaaaaggtaagttgattgcttcagtggagatgaagtgtggagaaggctcatttttcgatatttttcacattaatactaatcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23210" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22910" g_stop="22702" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="21877" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="645" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E348301" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22910" e_stop="22702"/>
          <exon e_start="22312" e_stop="21877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGAATATGTTAT</genome_strand>
        <mrna_strand>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348116" ref_strand="+" ref_description="SGN-E348116 [cTOF-31-N6]">
      <seq>tttttcgctctttttcaccttactactaatcaggtacccaatctaagtcctaaaaatatcgtcccttttggaattcacgaaggtgaaagcgttaagaactggttcgattgttagttggaaataccaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaaaatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtggtgggtgtgatgaatatttggctagttctaccagcatgtggaataggtaatgtttttgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23131" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22831" g_stop="22702" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="21886" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="558" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="572"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E348116" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22831" e_stop="22702"/>
          <exon e_start="22312" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAG-ACTGGTTCGATTGTTAGTTGGAAATA-CAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGT-GTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>TTTTTCGCTCTTTTTCACCTTACTACTAATCAGGTACCCAATCTAAGTCCTAAAAATATCGTCCCTTTTGGAATTCACGAAGGTGAAAGCGTTAAGAACTGGTTCGATTGTTAGTTGGAAATACCAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAA-AATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGGTGGGTGTGATGAATATTTGGCTAGTTCTA-CCAGCATGTGGAATAGGTAATGTTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222302" ref_strand="+" ref_description="SGN-E222302 [cLEL-16-L9](-)">
      <seq>tgccgatcctccacagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="22575" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22275" g_stop="21886" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E222302" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22275" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>TGCCGATCCTCCACAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGT-ATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227725" ref_strand="+" ref_description="SGN-E227725 [cLEL-30-P24](-)">
      <seq>gtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccctgccatgaccaaggatatagaaagtccccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtggctatgtagatacccattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgattaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="22486" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22186" g_stop="21886" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="327"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E227725" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22186" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>GTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCCTGCCATGACCAAGGATATAGAAAGTCCCCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGGCTATGTAGATACCCATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221242" ref_strand="+" ref_description="SGN-E221242 [cLEL-22-A17](-)">
      <seq>ttgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="22459" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22159" g_stop="21886" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="293"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E221242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22159" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>TTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222729" ref_strand="+" ref_description="SGN-E222729 [cLEL-16-L9](-)">
      <seq>gaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttcccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgtttttgatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="22451" stop="21583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22151" g_stop="21886" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="267" polyA_stop="283"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E222729" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22151" e_stop="21886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</genome_strand>
        <mrna_strand>GAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTCCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203258" ref_strand="+" ref_description="SGN-E203258 [cLEB-3-A22]">
      <seq>gcacgaggattgcttcagtggagatgaagtgtggagaaggctcatttttcgatatttttcacattaatactaatcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgtatgtgtgactatgtagatacacattataagtatgtgtgtgttggtgtgatgaatatttggctagttctagccagcatgtggaataagtaatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23175" stop="21591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22875" g_stop="22702" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="21891" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="596" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E203258" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22875" e_stop="22702"/>
          <exon e_start="22312" e_stop="21891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTT</genome_strand>
        <mrna_strand>GCACGAGGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279928" ref_strand="+" ref_description="SGN-E279928 [cLER-8-K14]">
      <seq>ttaaaaaaataaaaaatatgggtttaaaaggtaagttgattgcttcagtggagatgaagtgtggagaaggctcatttttcgatatttttcacattaatactaatcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggtgttatccttgccatgaccaaggatatagaaagtcaccttctcaagaaataatgtgtgtatgtgtgatgaataatttggctagttctagctagcatgtggaataataaataatataatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23205" stop="21688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22905" g_stop="22702" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="21988" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="529" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E279928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22905" e_stop="22702"/>
          <exon e_start="22312" e_stop="21988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGT</genome_strand>
        <mrna_strand>TTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282449" ref_strand="+" ref_description="SGN-E282449 [cLER-18-E17]">
      <seq>aaatatgggtttaaaaggtaagttgattgcttcagtggagatgaagtgtggagaaggctcatttttcgatatttttcacattaatactaatcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatactgtaattttacaacatcttgtgatggccagtggactacttggacaattgactacgaaaagaaaactgaagataccccagaacccctccttcacttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23192" stop="21807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22892" g_stop="22702" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="22107" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="397" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E282449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22892" e_stop="22702"/>
          <exon e_start="22312" e_stop="22107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGT</genome_strand>
        <mrna_strand>AAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277149" ref_strand="-" ref_description="SGN-E277149 [cLEL-3-M18](-)">
      <seq>gcacgaggattgcttcagtggagatgaagtgtggagaaggctcattggtcgatatttttcacattaatactactcaggtacccaatataagtcctaaaaatatcgtccattttggaattcacgaaggtgaaagcgttaagactggttcgattgttagttggaaatacaacgaagctggacaagaaatgtatatgaagcacttaattgaagctgccgatcctcagcagaaattaatcaaatggaaagttatcgaaggagatttattgaagttgtataaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="23175" stop="21905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22875" g_stop="22702" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22312" g_stop="22205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="282" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E277149" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22875" e_stop="22702"/>
          <exon e_start="22312" e_stop="22205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAGGTAACTCACCTTTTTTTGTACCCTATCTCTCTCTCTTAATATGATTTACTTGCATAAATTTTCTCTATTTAAAAATATTTGACAATAACTAATAAGAAAGTTTATTTTTAAGAGAAAAATCTTCATGAAAACATATTCGATGGTGTAAAAATTTCATAAATATAGTACAAGTAAATCCTTTTGCTTTTCAATGAAGGAATATAACTACTCATCACTCACTAATCTTTAATAATAATTAAAAAAAAAACTTATCAAAGCAGTAATAACATCACAAATATAATTTTCTCACCTAATAATATTTTGTAAATGTTTAAATTCTCCATAAGGTATTGAACAGTTGAACTAGTGATAACGATCTCTTGTATTTTCTGTTTATAATATGATTGTAGCTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACT</genome_strand>
        <mrna_strand>GCACGAGGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTGGTCGATATTTTTCACATTAATACTACTCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575339" ref_strand="+" ref_description="SGN-E575339 [34948]">
      <seq>cctcgtgccgtaagtttccatggctagctcaaccaggttgcagtcaagctgacggaataattgcaaataatcatgagctcactcctttggaaaagcatgtcatgttcttcgatatcaataatgctggaataatttacccttcagaaacgtaccaagcttttagaaagatgggacgtggtattttccgttctatgtattgctagctagttctcattgcattttaagtctcagtcacaagactcgaccgggaacatgcccatctttattcttccccattgtggtagacaatattacatatgccatacatggtagtgattctggtgcctatgactctgaagcggaggtttgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="32926" stop="30960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32621" g_stop="32583" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="54" r_length="40" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32582" i_stop="32502" i_length="81">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32501" g_stop="32400" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="156" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32399" i_stop="31944" i_length="456">
            <donor d_prob="0.927" d_score="0.90"/>
            <acceptor a_prob="0.963" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31943" g_stop="31858" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="247" r_length="91" r_score="0.849"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31857" i_stop="31357" i_length="501">
            <donor d_prob="0.995" d_score="0.78"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31356" g_stop="31266" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="338" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E575339" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32621" e_stop="32583"/>
          <exon e_start="32501" e_stop="32400"/>
          <exon e_start="31943" e_stop="31858"/>
          <exon e_start="31356" e_stop="31266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATGGCTAGCTCAACTA-GTTGCAGTCAAGCTGACGGTACGTATATCAAAGTTACTTTTTTTTTTAATGATCATATAGCGATTTTATAAAAAATCTGCGTATATTCAATTCGTGCAGGAATAATTGTAAATAATCATGAGCTCACTCCTTTGGAAAAGCATGTTATGTTTTTCGATATCAATAATGATGGAATAATTTATCCTTCAGAAACGTATAAAGGTTTTTCCTTCTTTTCTTAGCTAGTCAACATTAAAAAGTCACTATTTTTTCGTTCAAATTTTTATTGGAAAATGTTCGGTAGTTATTTTTTCAGAATTTTTAGTTGAATTAATATGAAAACTGAAAAAAACAAAAGTATAATTGTTTCATATGAAAAAATTAGAAATGTTTTTCACCATGCATTTTTCGACTATGTTGATTCGAAATGAATGAAAAAATAATGTTCTCTAGCGTAAGTTTTCATTGATTTATGGTGGAAAAAATATTTGTTTCTATTAGTGAATTTAATAAATATAGAGTTCTTGTTTTCATTGATTTATGATGGAAAAAATATTTGTTTCTATTAGTGAATTTAATAAATATAGAGTTCTTTTTTTTTCCTTTTATTTTATACACTAATATATATTTTCTTTGACTTGTCTTAATTATTTTCTGATTTATAATTATTTTTTTCAGCTTTTAGAAAGATGGGGCGTGGTATTTTCCGTTCTATGT-TTTCT-GCT-GTTCTCATT-CATTTTAA-TCTCAGTTACAAGACTCGACCGGTAATTTTCACATATATATATATATTTATTTATTTATTTTCTCTATATATCGAGCATATTTTGGAAATAATATAGTTTTGGTACTTTTTTCTGAGTATATATTGTTATTTTTTTCTTCTATGTATGGTTTCATAATATAGTTTTGGTACTTTTTTAAAAAAATTGATATGATTTGTCAATGTGAATTTCTCTATTGACTTAGTAGTTAGATTAGGAACATGCACATTTGATAAAAAGGCAAAATTTATCTCCATTTGTTAAAAAATACATAAAAATAATAATTTATGTATAATATAAGAGTCAAGTAAAATGAAATGGACAGACAGAGTACTTTTTTTTTACGAAGTTCTTAAAGTAATTTAGAATTGATATTTTTCAAAGTAAAACTTAGGGAATTGAAAGTGGATCACAAATAAGTCATCTTTGGATATGATTTGTACTAATGTTCTCAACAATATAATTTATTCTAATTTTCTATGCTTTTTTTTTTGTGTGTCACAGGGGAAATGGCCATCTTTACTCTTCCCTATTGTGGTAGAAAATATTAAATATGCCATACATGGTAGTGATTCTGGTGCCTATGACTCTGAAG</genome_strand>
        <mrna_strand>TTTCCATGGCTAGCTCAACCAGGTTGCAGTCAAGCTGACG.................................................................................GAATAATTGCAAATAATCATGAGCTCACTCCTTTGGAAAAGCATGTCATGTTCTTCGATATCAATAATGCTGGAATAATTTACCCTTCAGAAACGTACCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAGAAAGATGGGACGTGGTATTTTCCGTTCTATGTATTGCTAGCTAGTTCTCATTGCATTTTAAGTCTCAGTCACAAGACTCGACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACATGCCCATCTTTATTCTTCCCCATTGTGGTAGACAATATTACATATGCCATACATGGTAGTGATTCTGGTGCCTATGACTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256815" ref_strand="+" ref_description="SGN-E256815 [cLEG-40-M20]">
      <seq>cgggccgcagggaaaaaaggaaacatatttcatttttcttctgaaattaaaaaccctattttgattttcttcagagatctgctgagaatcgttttccggcgacggcgacggctactctcaacgttaagttcctgaactgtgcaatcgtctttcaaagatggactatcattttctggcgaaatcgaaaactgaatgaggaactctggtgatgacacctaataagagaccgaagaaacttgttgataatggacctgatgaagcctcgaaggttatgacacctaataagagacagaagcaacttgttgataatggacctaatgaagcctccaaggttatgacacctaataagagacagaagcaacttgttgataatggacctgacgaagcctccaaggttatggcacctaataatagacagaagcaacttgttgataatggacctgatgaagcctacttaatcgggatgcaaaagtttttggataatgcttttggaagaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="35169" stop="37867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35456" g_stop="35661" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35662" i_stop="37272" i_length="1611">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37273" g_stop="37567" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="500" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E256815" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35456" e_stop="35661"/>
          <exon e_start="37273" e_stop="37567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGAATAATTAAAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTGGTAAGTTTTTGACATTATGAAAAAAAAAGCAGCAGCAGAATAATCTCTTCCGTGATTGTTGAAAATCCTCATTTTATATGAATTCATTGTGAAGGACGTTGATTTTAGTGTTTCTTACAGTACAGTAGTTTTTTCACCTTTTTTGAACAATAACACCTAGTTGATTGTTTAAGTGTGTTGCATTTTTTTAACTTTTGCTTTTTGAACTAGAAGAATTTGCTTGAGCTTGGTGATATTCTTTTACAGATTAATTGGTGAACTTGGTGGCTGTTTTACTATGAAATTTTTTATGCATGTAGTTGAAATTAGCTGACTTAGAATGATTTAGATTGTAGAAATGTTACTGGAGAGATTTTACTTATTTGTGGTTGAGTGAGTGAGTGATTGAGTTTTCTGTCTGTTGCTTGTATGTATATATTCCCATATTTAGAAACATAAAATATGTTGGTAGGTTTTTATCTTATATAATACTTTATTGGTTTTAAAGGTGGAGTAATGCATGTATTGTTGGAGTTTCTTCTTAATTATGAAAGTTGATGTACTAAAATGATTGTAGGGATACTTGTGTCTTCTCTGCATCAATTACTAAAGTAACCAATAAGTATATAGAGAGATCATGGTTGACATTAAGATTGTAAGATGAGTTACTTGAGATGAACAGAAGATGCTATCAATGTAATTGATTGACCTATGTTAGCTGTCACTTATGTCTCTGTACACAATGACAATGTTTCCAAAATACTTGGTCATCACTGCTGAAATCATTTGCACATGAAGCAGATAAAGTCTGTCCTACGTGTAGTGTGATTTGGGGATTGATTTTTTTGTGTATGGTCAGATATCTAAAGTTGTCTTGGATGACTTTGCTTTGGTTCATTCTGGTCTGATGGCTCCAACTTGATCTTATTGTGATGTCTTCTACCCTCTTTAAAGTTGCTTTGGTTACAAAGTACAAGTTCGTGTTTGCAGAGGTGAAGATTTTCTCCATCAATGGTCTGTAGATTAAAGGGATTTGTACCACCCCATTTAGAGGCGGAACCAGTGTTTTTAGTTTATGCATTCTGGATAATTATCCTTTTTTATTTGTTGTGTTCTGCCAGTTCTGGATAGATTATTTGTAAATATTAAATGAAAATTTTAATACAAATACAAAATTTAGTTTAAGTTACTGGGTTATGCTGAACCCGAAGCTTTAATGGTGGCTCCGCTCCTAACCCATTGTAATAATTACCTCGTTAGCTCTAGTTTGTGAAATATCCTTAGTCAATTATTATAAATCTTAACCTATTTTCTCAAATATCTCAACTTCTCGTGTGTATAGAAACTTAATGTTTACGATTTATTCAGTTTTTGTAGTAATTTACATATATACATTAGTTTTAGTTTCTGTAACGTCATTAGTAAATAGTTGTTAGCCTAGTTCATTTTCTCGAAATCTCAGCTTCTTGTGGCTAAACTTTTGTAGCTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGGGTATATAATTTTTCTTAGAAGTTATATGCATCTTAGTACTTTCCTTTAGTATGCTTTATATTTTTCTAATTTAATCTTTATGCATCCCCAAGGTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAG</genome_strand>
        <mrna_strand>CGGGCCG-CAGGGAAAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATAATGCTTTTGGAAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369441" ref_strand="+" ref_description="SGN-E369441 [TUS-23-M23]">
      <seq>aaaaaggaaacatatttcatttttcttctgaaattaaaaaccctattttgattttcttcagagatctgctgagaatcgttttccggcgacggcgacggctactctcaacgttaagttcctgaactgtgcaatcgtctttcaaagatggactatcattttctggcgaaatcgaaaactgaatgaggaactctgcttcttgcgagctcaacacacctggctccttgaattatctctcttatatttcgggtgatgacacctaataagagaccgaagaaacttgttgataatggacctgatgaagcctcgaaggttatgacacctaataagagacagaagcaacttgttgataatggacctaatgaagcctccaaggttatgacacctaataagagacagaagcaacttgttgataatggacctgacgaagcctccaaggttatggcacctaataatagacagaagcaacttgttgataatggacctgatgaagcctacttaatcgggatgcaaaagtttttggattatgcttttggaagaacagaagaactatatgaaatacgatgtccatgtgtcaaatgttgctacacaactgtaggaacacgcgaaacaatcgagtcacattgaaagttttatggaataattcaaaagtatactttaggggtgtctggaaatgattcaccaggtgctttaagtgagggaccaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="35170" stop="38033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35470" g_stop="35661" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37127" g_stop="37180" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="246" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37273" g_stop="37733" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="707" r_length="461" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E369441" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35470" e_stop="35661"/>
          <exon e_start="37127" e_stop="37180"/>
          <exon e_start="37273" e_stop="37733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTGGTAAGTTTTTGACATTATGAAAAAAAAAGCAGCAGCAGAATAATCTCTTCCGTGATTGTTGAAAATCCTCATTTTATATGAATTCATTGTGAAGGACGTTGATTTTAGTGTTTCTTACAGTACAGTAGTTTTTTCACCTTTTTTGAACAATAACACCTAGTTGATTGTTTAAGTGTGTTGCATTTTTTTAACTTTTGCTTTTTGAACTAGAAGAATTTGCTTGAGCTTGGTGATATTCTTTTACAGATTAATTGGTGAACTTGGTGGCTGTTTTACTATGAAATTTTTTATGCATGTAGTTGAAATTAGCTGACTTAGAATGATTTAGATTGTAGAAATGTTACTGGAGAGATTTTACTTATTTGTGGTTGAGTGAGTGAGTGATTGAGTTTTCTGTCTGTTGCTTGTATGTATATATTCCCATATTTAGAAACATAAAATATGTTGGTAGGTTTTTATCTTATATAATACTTTATTGGTTTTAAAGGTGGAGTAATGCATGTATTGTTGGAGTTTCTTCTTAATTATGAAAGTTGATGTACTAAAATGATTGTAGGGATACTTGTGTCTTCTCTGCATCAATTACTAAAGTAACCAATAAGTATATAGAGAGATCATGGTTGACATTAAGATTGTAAGATGAGTTACTTGAGATGAACAGAAGATGCTATCAATGTAATTGATTGACCTATGTTAGCTGTCACTTATGTCTCTGTACACAATGACAATGTTTCCAAAATACTTGGTCATCACTGCTGAAATCATTTGCACATGAAGCAGATAAAGTCTGTCCTACGTGTAGTGTGATTTGGGGATTGATTTTTTTGTGTATGGTCAGATATCTAAAGTTGTCTTGGATGACTTTGCTTTGGTTCATTCTGGTCTGATGGCTCCAACTTGATCTTATTGTGATGTCTTCTACCCTCTTTAAAGTTGCTTTGGTTACAAAGTACAAGTTCGTGTTTGCAGAGGTGAAGATTTTCTCCATCAATGGTCTGTAGATTAAAGGGATTTGTACCACCCCATTTAGAGGCGGAACCAGTGTTTTTAGTTTATGCATTCTGGATAATTATCCTTTTTTATTTGTTGTGTTCTGCCAGTTCTGGATAGATTATTTGTAAATATTAAATGAAAATTTTAATACAAATACAAAATTTAGTTTAAGTTACTGGGTTATGCTGAACCCGAAGCTTTAATGGTGGCTCCGCTCCTAACCCATTGTAATAATTACCTCGTTAGCTCTAGTTTGTGAAATATCCTTAGTCAATTATTATAAATCTTAACCTATTTTCTCAAATATCTCAACTTCTCGTGTGTATAGAAACTTAATGTTTACGATTTATTCAGTTTTTGTAGTAATTTACATATATACATTAGTTTTAGTTTCTGTAACGTCATTAGTAAATAGTTGTTAGCCTAGTTCATTTTCTCGAAATCTCAGCTTCTTGTGGCTAAACTTTTGTAGCTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGGGTATATAATTTTTCTTAGAAGTTATATGCATCTTAGTACTTTCCTTTAGTATGCTTTATATTTTTCTAATTTAATCTTTATGCATCCCCAAGGTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAG-TTTATGGAATAATTCAAAAGTATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAA</genome_strand>
        <mrna_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG............................................................................................GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACA-TTGAAAGTTTTATGGAATAATTCAAAAGTATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTTTAAGTGAGGGACCAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247032" ref_strand="+" ref_description="SGN-E247032 [cLEF-41-B3]">
      <seq>aaaaaggaaacatatttcatttttcttctgaaattaaaaaccctattttgattttcttcagagatctgctgagaatcgttttccggcgacggcgacggctactctcaacgttaagttcctgaactgtgcaatcgtctttcaaagatggactatcattttctggcgaaatcgaaaactgaatgaggaactctgcttcttgcgagctcaacacacctggctccttgaattatctctcttatatttcgggtgatgacacctaataagagaccgaagaaacttgttgataatggacctgatgaagcctcgaaggttatgacacctaataagagacagaagcaacttgttgataatggacctaatgaagcctccaaggttatgacacctaataagagacagaagcaacttgttgataatggacctgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="35170" stop="37750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35470" g_stop="35661" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37127" g_stop="37180" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="246" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37273" g_stop="37450" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="424" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E247032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35470" e_stop="35661"/>
          <exon e_start="37127" e_stop="37180"/>
          <exon e_start="37273" e_stop="37450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTGGTAAGTTTTTGACATTATGAAAAAAAAAGCAGCAGCAGAATAATCTCTTCCGTGATTGTTGAAAATCCTCATTTTATATGAATTCATTGTGAAGGACGTTGATTTTAGTGTTTCTTACAGTACAGTAGTTTTTTCACCTTTTTTGAACAATAACACCTAGTTGATTGTTTAAGTGTGTTGCATTTTTTTAACTTTTGCTTTTTGAACTAGAAGAATTTGCTTGAGCTTGGTGATATTCTTTTACAGATTAATTGGTGAACTTGGTGGCTGTTTTACTATGAAATTTTTTATGCATGTAGTTGAAATTAGCTGACTTAGAATGATTTAGATTGTAGAAATGTTACTGGAGAGATTTTACTTATTTGTGGTTGAGTGAGTGAGTGATTGAGTTTTCTGTCTGTTGCTTGTATGTATATATTCCCATATTTAGAAACATAAAATATGTTGGTAGGTTTTTATCTTATATAATACTTTATTGGTTTTAAAGGTGGAGTAATGCATGTATTGTTGGAGTTTCTTCTTAATTATGAAAGTTGATGTACTAAAATGATTGTAGGGATACTTGTGTCTTCTCTGCATCAATTACTAAAGTAACCAATAAGTATATAGAGAGATCATGGTTGACATTAAGATTGTAAGATGAGTTACTTGAGATGAACAGAAGATGCTATCAATGTAATTGATTGACCTATGTTAGCTGTCACTTATGTCTCTGTACACAATGACAATGTTTCCAAAATACTTGGTCATCACTGCTGAAATCATTTGCACATGAAGCAGATAAAGTCTGTCCTACGTGTAGTGTGATTTGGGGATTGATTTTTTTGTGTATGGTCAGATATCTAAAGTTGTCTTGGATGACTTTGCTTTGGTTCATTCTGGTCTGATGGCTCCAACTTGATCTTATTGTGATGTCTTCTACCCTCTTTAAAGTTGCTTTGGTTACAAAGTACAAGTTCGTGTTTGCAGAGGTGAAGATTTTCTCCATCAATGGTCTGTAGATTAAAGGGATTTGTACCACCCCATTTAGAGGCGGAACCAGTGTTTTTAGTTTATGCATTCTGGATAATTATCCTTTTTTATTTGTTGTGTTCTGCCAGTTCTGGATAGATTATTTGTAAATATTAAATGAAAATTTTAATACAAATACAAAATTTAGTTTAAGTTACTGGGTTATGCTGAACCCGAAGCTTTAATGGTGGCTCCGCTCCTAACCCATTGTAATAATTACCTCGTTAGCTCTAGTTTGTGAAATATCCTTAGTCAATTATTATAAATCTTAACCTATTTTCTCAAATATCTCAACTTCTCGTGTGTATAGAAACTTAATGTTTACGATTTATTCAGTTTTTGTAGTAATTTACATATATACATTAGTTTTAGTTTCTGTAACGTCATTAGTAAATAGTTGTTAGCCTAGTTCATTTTCTCGAAATCTCAGCTTCTTGTGGCTAAACTTTTGTAGCTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGGGTATATAATTTTTCTTAGAAGTTATATGCATCTTAGTACTTTCCTTTAGTATGCTTTATATTTTTCTAATTTAATCTTTATGCATCCCCAAGGTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACG</genome_strand>
        <mrna_strand>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG............................................................................................GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320195" ref_strand="+" ref_description="SGN-E320195 [cTOB-21-K11]">
      <seq>gaaattaaaaaccctattttgattttcttcagagatctgctgagaatcgttttccggcgacggcgacggctactctcaacgttaagttcctgaactgtgcaatcgtctttcaaagatggactatcattttctggcgaaatcgaaaactgaatgaggaactctgcttcttgcgagctcaacacacctggctccttgaattatctctcttatatttcgggtgatgacacctaataagagaccgaagaaacttgttgataatggacctgatgaagcctcgaaggttatgacacctaataagagacagaagcaacttgttgataatggacctaatgaagcctccaaggttatgacacctaataagagacagaagcaacttgttgataatggacctgacgaagcctccaaggttatggcacctaataatagacagaagcaacttgttgataatggacctgatgaagcctacttaatcgggatgcaaaagtttttggattatgcttttggaagaacagaagaactatatgaaatacgatgtccaggtgtcaaatgttgctacacaactgtaggaacacgcgaaacaatcgagtcacatttgaaagtttatggaataattcaaaagatacttttaggggtgtctggaaatgattcaccaggtgctataagtgagggacgaggcaaagaacaggatgttagatctatgcgctctttgggggcatctggaaatgatgtaggatccttccatcaaattctctttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="35199" stop="38115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35499" g_stop="35661" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.596" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37127" g_stop="37180" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="217" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37273" g_stop="37815" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="759" r_length="542" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E320195" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35499" e_stop="35661"/>
          <exon e_start="37127" e_stop="37180"/>
          <exon e_start="37273" e_stop="37815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTGGTAAGTTTTTGACATTATGAAAAAAAAAGCAGCAGCAGAATAATCTCTTCCGTGATTGTTGAAAATCCTCATTTTATATGAATTCATTGTGAAGGACGTTGATTTTAGTGTTTCTTACAGTACAGTAGTTTTTTCACCTTTTTTGAACAATAACACCTAGTTGATTGTTTAAGTGTGTTGCATTTTTTTAACTTTTGCTTTTTGAACTAGAAGAATTTGCTTGAGCTTGGTGATATTCTTTTACAGATTAATTGGTGAACTTGGTGGCTGTTTTACTATGAAATTTTTTATGCATGTAGTTGAAATTAGCTGACTTAGAATGATTTAGATTGTAGAAATGTTACTGGAGAGATTTTACTTATTTGTGGTTGAGTGAGTGAGTGATTGAGTTTTCTGTCTGTTGCTTGTATGTATATATTCCCATATTTAGAAACATAAAATATGTTGGTAGGTTTTTATCTTATATAATACTTTATTGGTTTTAAAGGTGGAGTAATGCATGTATTGTTGGAGTTTCTTCTTAATTATGAAAGTTGATGTACTAAAATGATTGTAGGGATACTTGTGTCTTCTCTGCATCAATTACTAAAGTAACCAATAAGTATATAGAGAGATCATGGTTGACATTAAGATTGTAAGATGAGTTACTTGAGATGAACAGAAGATGCTATCAATGTAATTGATTGACCTATGTTAGCTGTCACTTATGTCTCTGTACACAATGACAATGTTTCCAAAATACTTGGTCATCACTGCTGAAATCATTTGCACATGAAGCAGATAAAGTCTGTCCTACGTGTAGTGTGATTTGGGGATTGATTTTTTTGTGTATGGTCAGATATCTAAAGTTGTCTTGGATGACTTTGCTTTGGTTCATTCTGGTCTGATGGCTCCAACTTGATCTTATTGTGATGTCTTCTACCCTCTTTAAAGTTGCTTTGGTTACAAAGTACAAGTTCGTGTTTGCAGAGGTGAAGATTTTCTCCATCAATGGTCTGTAGATTAAAGGGATTTGTACCACCCCATTTAGAGGCGGAACCAGTGTTTTTAGTTTATGCATTCTGGATAATTATCCTTTTTTATTTGTTGTGTTCTGCCAGTTCTGGATAGATTATTTGTAAATATTAAATGAAAATTTTAATACAAATACAAAATTTAGTTTAAGTTACTGGGTTATGCTGAACCCGAAGCTTTAATGGTGGCTCCGCTCCTAACCCATTGTAATAATTACCTCGTTAGCTCTAGTTTGTGAAATATCCTTAGTCAATTATTATAAATCTTAACCTATTTTCTCAAATATCTCAACTTCTCGTGTGTATAGAAACTTAATGTTTACGATTTATTCAGTTTTTGTAGTAATTTACATATATACATTAGTTTTAGTTTCTGTAACGTCATTAGTAAATAGTTGTTAGCCTAGTTCATTTTCTCGAAATCTCAGCTTCTTGTGGCTAAACTTTTGTAGCTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGGGTATATAATTTTTCTTAGAAGTTATATGCATCTTAGTACTTTCCTTTAGTATGCTTTATATTTTTCTAATTTAATCTTTATGCATCCCCAAGGTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAGTATAC-TTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATCAAAATTCTCTTTACTCT</genome_strand>
        <mrna_strand>GAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG............................................................................................GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCAGGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAG-ATACTTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATC-AAATTCTCTTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="45685" stop="52516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45985" g_stop="46247" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46248" i_stop="46413" i_length="166">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46414" g_stop="46460" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="304" r_length="48" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46461" i_stop="51029" i_length="4569">
            <donor d_prob="0.000" d_score="0.91"/>
            <acceptor a_prob="0.896" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51030" g_stop="51039" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="314" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51040" i_stop="51983" i_length="944">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51984" g_stop="52214" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="546" r_length="232" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45985" e_stop="46247"/>
          <exon e_start="46414" e_stop="46460"/>
          <exon e_start="51030" e_stop="51039"/>
          <exon e_start="51984" e_stop="52214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGAGAATCAATCCACAGCAATAAAGTACACGAAGAAATATATGTGTTT-TTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCGCGCGGATCCGAGTCGGATCGGGTTAACTAAAGAGTTGAAAATATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCTGAAG-CGAGCGACGACGACGACGGCGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACTGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATTAATTCTTGCTACATACCCAACAATCCCCCACATTGATGGGGAATAGTTATAACATAGGAATGCACGAACAATTGTGTACTTTACAAGCAATGATTAATTGCATCTGGATAAGTAGGTTTCCCCTTGGACTTTCCGTAGTGAACATATGTCGGATATACTCGGTCAATCGGTAGATGTGATATCTTTGAACCGTCGAACTTCGGTGTATACCTAGACAACCATATGTCACACAATTAACCCTTTACTGTTTATGATTCTTACGGTTGTGTTCGTTTCAGCCATGAACACCTCCTGGTTTCATGAGTGTATAGAGAATAGGTTTTTGACATAAAATTCTCTTTGAAGCGGCTTTCACTTCACACTCACATAGGTGATTTCAAACCGTGTCATCTCGTAGATACACTATTTGATCAAATCTACCAAACTTAGCAAATCAATAAAAACTTTAAGCTTTATTACCTCATTAACAAGCCTTAAAGTCTTAACCTTTTCCTGAACATTGTCTTCATCATGAGAATGGATTGAGTTAATTGACAATGTCGAACCGTCAGCCACAACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGGATCTCCAGTCTGCTAGATAGAGTTACGGTCACGCTGACTTGTCCTAAGCCGTAAACCCATTCCCTTAGATGATCTTTCAACTACCTCTCTCACTAGGCCTTTCGTTAGTAGATTTGACACATTATCGCTTGACTTTACATAGTCAATTGTGATAATTCCACTAGAGAGCAGTTGTCTTATGGTGTTATGTCTACGTCGTATATGACGAGACTTTCCGTTGTACATAACGCTCCCTGCCCTACCTATTGCTGCTTGACTATCGCAATGTATGCAAATTGGTCCAACAGGTTTGGGCCAGAATGGAATATCCTCTAGCAAATTCCGGAGCCATTCCGCTTATTCACCAGACTTATCCAAAGCAATGAATTCAGATTCCATTGTGGAGCGAGCAATACATGTCTGTTTGGAAGATTTCCAAGAGACAGCTCCTCCACCAAGTATGAATACATAACCACTCGTGAATTTTACATCATTTGACCCGATGATCCAATTTGCATCACTATATCCTTCAATCACAGCAGGATATTTATTATAATGCAAAGCATAATTTTGTGTCCATTTTAGATAACCCAACACACGTTTCATAGCCATCCAGTGAGTTTGATTTGGATTACTAGTGTACCGACTCAGTTTACTAATAGCACATGCTATATCTGGTCGCGTGCAATTCATAATATACATCAAACTTCCCAACACTCTAGCATATTTCAATTGAGAGTCACTTTGACCTTCATTGTTTTTAAATGTACAACTTAAATCAATTGGAGTTTTGACTACATTGAAATTCAAGCAATTGAACTTATCCAATACTTTTTCAATATAATGAGATTGAGATAATGCTAGTCCCTGGGGAGTTTTGATAATCCTGACCCCTAAGATCAAATCAGCAACTCCTAAGTCTTTCATATCGAACTTGCTGGACAACATGCGCTTAGTAGCATTTATATCGTCAATTTCTTTACTCATTATTAACATGTCATCAACATACAAACAAACAATGACTTCATGATTCATAACGTTTTTAATGTAAACACATTTATCACATTCGTTAATCTTGAATCCACTTGCCAACATTATTTGATCAAATTTAGCATGCCATTGTTTAGGTGCTTGCTTGAGTCCATAAAGTGACTTCACAAGTCTGCACACTTTCTTTTCTTTACCAGGAACTATAAACCCTTCAGGTTGTTCCATGTAAATTTCTTCCACCAAATGTCTTTACATCCATTTGGTGGATTTTAAGATCATGCACTGCTGCTAGTGCTATTAACATCCTAATTGATGTTATCCTTGTTACTAGAGAATATGTGTCAAAGTAGTCCAGACCTTCCTTTTGTCTGTACCCTTTGACTACCAGTCTAGCCTTATATTTGTCAATAGTCCCATCAGGTTTCATTTTCCTTTTAAAGATCCATTTTGATCCTAAAGATTTATTTCCTGGAGGAAATAAGTGTGATTGCTTAAAATTGATTCAATCTCACTATTGACTGCTTCTTTCCAATAAGTTGACTCTGACGAAGACATAACTGCTTTAAATGTTTGAGGCTCATTTTCAAGCAATAGTATTACAAAATTTGGTCCGAAAGAAACAAATTTTCGTTGTCGAGTACTTCGCCTATGTTCCTCACTAGTTAGAATATTTTCCATTGATTCTTCTCGTGGTCGTTTAGGTCTTTCACTTGTTGACTCACTTTCAGTTTTATACGGATATGTTTTCAAAAAATTCTGCATTATCTGATTCAATTATCGTATTAACATGAATCTCAGGATTATCAGATTTGTGAACCAAAAATCGACAGGCTTTACTATTCACAGCATACCCAATAAAGACACAATCTATTGTTTTGGGTCCAATTTTAACCCTCTTAGGTAAATGAACCTCTACCTTGGCTAAACACCCCCACACTTTGAAATATTTCAAGTTGGGTTTTCTTCCTTTCCACAACTCATATGGAATTGATTGTGTTTTTCGATGGGGTACTCTATTGAGTATTTTATTAGCTGTAAGGATGGCTTCCCCCCAAAGATTTCGCGGTGAACCAGAATTGATCATTAAGGCATTCATCATTTCCTTTAATGTTCTGTTCTTCCGTTCTGCCAAACCATTTGACTGTGGTGTATAAGGTGCAGTAGTTTGATGAATAATACCATATTCCAAACATATCTCTGCAAAAGGAGATTTATATTCTCCACCCCTATCACCCCGAATCATTTTTATCTTTAAATTCAATTGGTTTTCCACTTCATTTTTGTATTGCTTAAATGCATCAATTGCTTCATCCTTACTATTAAGCAAATATACATAACAAAATCGAGTGCAGTCATCAATAAAAGTTATAAAATACTTTTTCCCACCACGAGATGGTGTTGACTTCATATCGCATATATCTGTGTGAATTAAGTCTAAAGTTTTAGAATTTCTTTCAACAGACTTGTAAGGATGTTTAACAAACTTACTTTCCACACAAATTTCACATTTCGACTTATCGCATTTAAAATCAGGCAATACTTCTAGATTAACCAATTTTCGCAAGGCTTTGTAATTTACATGTCCTAAACGGGCATGCCATAAATCACTTAACTTCAATAAGTAAACAGAAGCAGAATTTTTATTAATACTGTCAATAACCATTACATTTAGTTTGAAAAGACCCGCATTGAGGTAGCCCTTTCCTATAAACATTTCATTCTTACTTATTACAGCTTTATCACTAACTAGGACACACTTAAACCCGTTCTTAACAAGTAGTGCAGCAGAAACTAAATTCTTCATAATAGTAGGGACATGCAGAACATTGTTTAAAGTCAACACTTTGCCGAATGTCATTTTCAACATTACTTTCCCAGTTCCTGCAATCCTTGTTGTTGCTGTGTTTCCCATGAATAAATCTTCATCGTACTCAGCAGGAGTGTATGTTGCAAAGATTTCTTTTGCAGAGCAAATATGTCTAGTAGCACCTGAGTCGAGAAACCACTTCTTGGGATTTCCAACTAAGTTACATTCTGATATCATTGCACACAAGTCATCCGCATCTTCTATCTTTTCCACGATGTTTGCTTGACTTTTGCCTTTGCCTTTATTTTTGTCCTTTCTTGGAGCATGACAATCAGAAGATCTATGACCAGCCTTGCCACAATTATAACAGTTGCCTTTGAATTTCTTCTTGGCCTGTTCTGACTTTTGCCCGTTGGACTTCTTTCTCTTTTTGTCTTTGGTAGAAGCTTCTTCAACAATATTAACTCCATTGATTGTTGAACTCTTACGCGACTTCTTTTCGGCATTTCTGTTATCTTCCTCAATCTTGAGCCGAATCACAAGATCTTCAAGCTTCATTTCTTTACGCTTGTGCTTTAGATAATTCTTGAAATCATTCCACGAAGGAGGCAACTTCTCGATCATTGCAGCCACTTGAAAAGCTTCATTTGCTACCATATCTTCAGCAATCAGATCATGGAGAATAAGTTGAAGTTCCTGCACTTGTGATCCAACAGTTTTACTATCTGTCATTTTATAGTCTAAAAACTTTGCGACCACAAACTTTTTCAAGCATGCATCTTCTGTCTTATATTTCTTCTCAAGTGCATTCCACAACTCTTTTGAAGTTGTTATCGCACTATAGACATTATATAAGTCATCCTCTAAAGCACTCAAAATGTAACCTTTACATAGGAAGTCTGACTGTTTCCATGCTTCAACAATCATAAATTTTTCCCTGTTTGGCATATCATCAGCAGGAACTGGAGTATCTTCACTTGTAAATTTCTGCAGACCAAGAGTGGTAAGCCAGAAAAATACTCGTTGCTGCCATCCTTTGAAATTCACACCTGTGAATTTACCCGGTTTCTCTGCTTATGATACAAGAGTTCGGGTTGGTGCAGCAACAACCACTGTAACACCAGTGTTTTCCATTTCTGATAAATAAAATTGATACAATATAAGTAAGCAATAAATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATTTAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAAACATAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGAAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAACTTACCAGAATTTGGAATACTCTTTTGAAAAATCCAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTACCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGAGAATCAATCCACAGCAGTAAAGTACACGAAGAAATATATGTGTTTTTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGATACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCACGCGGATCCGAGTCGGATCGGGTTAACTAAAGAGTTGAAAATATTTTTGGCCAAAAAATTATCTCTCGATCATTTGCCAAAGCTGAAGCGAGCGACGACGACGGCGCGA--GGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCACTACTGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAA-AAATGTGTTTATTAATAAGTAGGAATATCAGAAAA-TTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTT......................................................................................................................................................................AAAATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="45685" stop="52516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45985" g_stop="46247" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46248" i_stop="46413" i_length="166">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46414" g_stop="46460" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="304" r_length="48" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46461" i_stop="51029" i_length="4569">
            <donor d_prob="0.000" d_score="0.91"/>
            <acceptor a_prob="0.896" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51030" g_stop="51039" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="314" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51040" i_stop="51983" i_length="944">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51984" g_stop="52214" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="546" r_length="232" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45985" e_stop="46247"/>
          <exon e_start="46414" e_stop="46460"/>
          <exon e_start="51030" e_stop="51039"/>
          <exon e_start="51984" e_stop="52214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGAGAATCAATCCACAGCAATAAAGTACACGAAGAAATATATGTGTTT-TTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCGCGCGGATCCGAGTCGGATCGGGTTAACTAAAGAGTTGAAAATATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCTGAAG-CGAGCGACGACGACGACGGCGCGAGGGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACTGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATTAATTCTTGCTACATACCCAACAATCCCCCACATTGATGGGGAATAGTTATAACATAGGAATGCACGAACAATTGTGTACTTTACAAGCAATGATTAATTGCATCTGGATAAGTAGGTTTCCCCTTGGACTTTCCGTAGTGAACATATGTCGGATATACTCGGTCAATCGGTAGATGTGATATCTTTGAACCGTCGAACTTCGGTGTATACCTAGACAACCATATGTCACACAATTAACCCTTTACTGTTTATGATTCTTACGGTTGTGTTCGTTTCAGCCATGAACACCTCCTGGTTTCATGAGTGTATAGAGAATAGGTTTTTGACATAAAATTCTCTTTGAAGCGGCTTTCACTTCACACTCACATAGGTGATTTCAAACCGTGTCATCTCGTAGATACACTATTTGATCAAATCTACCAAACTTAGCAAATCAATAAAAACTTTAAGCTTTATTACCTCATTAACAAGCCTTAAAGTCTTAACCTTTTCCTGAACATTGTCTTCATCATGAGAATGGATTGAGTTAATTGACAATGTCGAACCGTCAGCCACAACTTTGTTTTTCTCCTTGAATCTAGCTCTTGGGATCTCCAGTCTGCTAGATAGAGTTACGGTCACGCTGACTTGTCCTAAGCCGTAAACCCATTCCCTTAGATGATCTTTCAACTACCTCTCTCACTAGGCCTTTCGTTAGTAGATTTGACACATTATCGCTTGACTTTACATAGTCAATTGTGATAATTCCACTAGAGAGCAGTTGTCTTATGGTGTTATGTCTACGTCGTATATGACGAGACTTTCCGTTGTACATAACGCTCCCTGCCCTACCTATTGCTGCTTGACTATCGCAATGTATGCAAATTGGTCCAACAGGTTTGGGCCAGAATGGAATATCCTCTAGCAAATTCCGGAGCCATTCCGCTTATTCACCAGACTTATCCAAAGCAATGAATTCAGATTCCATTGTGGAGCGAGCAATACATGTCTGTTTGGAAGATTTCCAAGAGACAGCTCCTCCACCAAGTATGAATACATAACCACTCGTGAATTTTACATCATTTGACCCGATGATCCAATTTGCATCACTATATCCTTCAATCACAGCAGGATATTTATTATAATGCAAAGCATAATTTTGTGTCCATTTTAGATAACCCAACACACGTTTCATAGCCATCCAGTGAGTTTGATTTGGATTACTAGTGTACCGACTCAGTTTACTAATAGCACATGCTATATCTGGTCGCGTGCAATTCATAATATACATCAAACTTCCCAACACTCTAGCATATTTCAATTGAGAGTCACTTTGACCTTCATTGTTTTTAAATGTACAACTTAAATCAATTGGAGTTTTGACTACATTGAAATTCAAGCAATTGAACTTATCCAATACTTTTTCAATATAATGAGATTGAGATAATGCTAGTCCCTGGGGAGTTTTGATAATCCTGACCCCTAAGATCAAATCAGCAACTCCTAAGTCTTTCATATCGAACTTGCTGGACAACATGCGCTTAGTAGCATTTATATCGTCAATTTCTTTACTCATTATTAACATGTCATCAACATACAAACAAACAATGACTTCATGATTCATAACGTTTTTAATGTAAACACATTTATCACATTCGTTAATCTTGAATCCACTTGCCAACATTATTTGATCAAATTTAGCATGCCATTGTTTAGGTGCTTGCTTGAGTCCATAAAGTGACTTCACAAGTCTGCACACTTTCTTTTCTTTACCAGGAACTATAAACCCTTCAGGTTGTTCCATGTAAATTTCTTCCACCAAATGTCTTTACATCCATTTGGTGGATTTTAAGATCATGCACTGCTGCTAGTGCTATTAACATCCTAATTGATGTTATCCTTGTTACTAGAGAATATGTGTCAAAGTAGTCCAGACCTTCCTTTTGTCTGTACCCTTTGACTACCAGTCTAGCCTTATATTTGTCAATAGTCCCATCAGGTTTCATTTTCCTTTTAAAGATCCATTTTGATCCTAAAGATTTATTTCCTGGAGGAAATAAGTGTGATTGCTTAAAATTGATTCAATCTCACTATTGACTGCTTCTTTCCAATAAGTTGACTCTGACGAAGACATAACTGCTTTAAATGTTTGAGGCTCATTTTCAAGCAATAGTATTACAAAATTTGGTCCGAAAGAAACAAATTTTCGTTGTCGAGTACTTCGCCTATGTTCCTCACTAGTTAGAATATTTTCCATTGATTCTTCTCGTGGTCGTTTAGGTCTTTCACTTGTTGACTCACTTTCAGTTTTATACGGATATGTTTTCAAAAAATTCTGCATTATCTGATTCAATTATCGTATTAACATGAATCTCAGGATTATCAGATTTGTGAACCAAAAATCGACAGGCTTTACTATTCACAGCATACCCAATAAAGACACAATCTATTGTTTTGGGTCCAATTTTAACCCTCTTAGGTAAATGAACCTCTACCTTGGCTAAACACCCCCACACTTTGAAATATTTCAAGTTGGGTTTTCTTCCTTTCCACAACTCATATGGAATTGATTGTGTTTTTCGATGGGGTACTCTATTGAGTATTTTATTAGCTGTAAGGATGGCTTCCCCCCAAAGATTTCGCGGTGAACCAGAATTGATCATTAAGGCATTCATCATTTCCTTTAATGTTCTGTTCTTCCGTTCTGCCAAACCATTTGACTGTGGTGTATAAGGTGCAGTAGTTTGATGAATAATACCATATTCCAAACATATCTCTGCAAAAGGAGATTTATATTCTCCACCCCTATCACCCCGAATCATTTTTATCTTTAAATTCAATTGGTTTTCCACTTCATTTTTGTATTGCTTAAATGCATCAATTGCTTCATCCTTACTATTAAGCAAATATACATAACAAAATCGAGTGCAGTCATCAATAAAAGTTATAAAATACTTTTTCCCACCACGAGATGGTGTTGACTTCATATCGCATATATCTGTGTGAATTAAGTCTAAAGTTTTAGAATTTCTTTCAACAGACTTGTAAGGATGTTTAACAAACTTACTTTCCACACAAATTTCACATTTCGACTTATCGCATTTAAAATCAGGCAATACTTCTAGATTAACCAATTTTCGCAAGGCTTTGTAATTTACATGTCCTAAACGGGCATGCCATAAATCACTTAACTTCAATAAGTAAACAGAAGCAGAATTTTTATTAATACTGTCAATAACCATTACATTTAGTTTGAAAAGACCCGCATTGAGGTAGCCCTTTCCTATAAACATTTCATTCTTACTTATTACAGCTTTATCACTAACTAGGACACACTTAAACCCGTTCTTAACAAGTAGTGCAGCAGAAACTAAATTCTTCATAATAGTAGGGACATGCAGAACATTGTTTAAAGTCAACACTTTGCCGAATGTCATTTTCAACATTACTTTCCCAGTTCCTGCAATCCTTGTTGTTGCTGTGTTTCCCATGAATAAATCTTCATCGTACTCAGCAGGAGTGTATGTTGCAAAGATTTCTTTTGCAGAGCAAATATGTCTAGTAGCACCTGAGTCGAGAAACCACTTCTTGGGATTTCCAACTAAGTTACATTCTGATATCATTGCACACAAGTCATCCGCATCTTCTATCTTTTCCACGATGTTTGCTTGACTTTTGCCTTTGCCTTTATTTTTGTCCTTTCTTGGAGCATGACAATCAGAAGATCTATGACCAGCCTTGCCACAATTATAACAGTTGCCTTTGAATTTCTTCTTGGCCTGTTCTGACTTTTGCCCGTTGGACTTCTTTCTCTTTTTGTCTTTGGTAGAAGCTTCTTCAACAATATTAACTCCATTGATTGTTGAACTCTTACGCGACTTCTTTTCGGCATTTCTGTTATCTTCCTCAATCTTGAGCCGAATCACAAGATCTTCAAGCTTCATTTCTTTACGCTTGTGCTTTAGATAATTCTTGAAATCATTCCACGAAGGAGGCAACTTCTCGATCATTGCAGCCACTTGAAAAGCTTCATTTGCTACCATATCTTCAGCAATCAGATCATGGAGAATAAGTTGAAGTTCCTGCACTTGTGATCCAACAGTTTTACTATCTGTCATTTTATAGTCTAAAAACTTTGCGACCACAAACTTTTTCAAGCATGCATCTTCTGTCTTATATTTCTTCTCAAGTGCATTCCACAACTCTTTTGAAGTTGTTATCGCACTATAGACATTATATAAGTCATCCTCTAAAGCACTCAAAATGTAACCTTTACATAGGAAGTCTGACTGTTTCCATGCTTCAACAATCATAAATTTTTCCCTGTTTGGCATATCATCAGCAGGAACTGGAGTATCTTCACTTGTAAATTTCTGCAGACCAAGAGTGGTAAGCCAGAAAAATACTCGTTGCTGCCATCCTTTGAAATTCACACCTGTGAATTTACCCGGTTTCTCTGCTTATGATACAAGAGTTCGGGTTGGTGCAGCAACAACCACTGTAACACCAGTGTTTTCCATTTCTGATAAATAAAATTGATACAATATAAGTAAGCAATAAATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATTTAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAAACATAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGAAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAACTTACCAGAATTTGGAATACTCTTTTGAAAAATCCAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTACCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGAGAATCAATCCACAGCAGTAAAGTACACGAAGAAATATATGTGTTTTTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGATACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCACGCGGATCCGAGTCGGATCGGGTTAACTAAAGAGTTGAAAATATTTTTGGCCAAAAAATTATCTCTCGATCATTTGCCAAAGCTGAAGCGAGCGACGACGACGGCGCGA--GGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCACTACTGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAA-AAATGTGTTTATTAATAAGTAGGAATATCAGAAAA-TTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAG---TGGCGGGAATTTTT......................................................................................................................................................................AAAATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="51062" stop="50068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50762" g_stop="50368" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50762" e_stop="50368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGCAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCAATGGAGTTAATATTGTTGAAGAAGCTTCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="51058" stop="50096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50758" g_stop="50396" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50758" e_stop="50396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGCAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCAATGGAGTTAATATTGTTGAAGAAGCTTCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="50911" stop="52084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51211" g_stop="51784" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51211" e_stop="51784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATTTAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAAACATAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGAAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAACTTACCAGAATTTGGAATACTCTTTTGAAAAATCCAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTACCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCT-CCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGAGAATCAATCCACAGCAGTAAAGTACACGAAGAAATATATGTGTTTTTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGATACGACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGT-TTTTTAAGAAGTAGGAAGATCAGAAAA-TTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="50912" stop="51918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51212" g_stop="51618" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51212" e_stop="51618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATTTAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAAACATAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGAAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAACTTACCAGAATTTGGAATACTCTTTTGAAAAATCCAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTACCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCT-CCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGAG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465618" ref_strand="+" ref_description="SGN-E465618 [cPRO-21-P7]">
      <seq>attttcctctctattttctctgtctatgttgagttttcatcttccttgtctaattctacttctttttttcaatattaattgcgatcctcatttatagtactcatcacaactttcttagtaacaattcgatagtccaatttttcacttcttgattctcctctaaactcctaataccaaaaaaaattagaaaatagtatggaggtagcaagagtttatgaaggttctaacaattgcttcatacttccaaatgaaattcttcctcctacttctaattgggtatctaactcttcctccattttccatggctctgtatccatggtaaatttcgaccaagatcgagtaccaaagtctaaaatgaggtcatttttagcacaacttgatcaagacgataatagcaacaacgatgacaattacaattatcacctaagtgaaaagaagagacgattgttaccgaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaactacagactcaatatgattgtctcttcaaagagaatgagagcttgagaaatgaggtacatttactcaaagaatagttgatcaacagagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80407" stop="82192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80693" g_stop="81011" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="699" r_length="395" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E465618" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80693" e_stop="81011"/>
          <exon e_start="81462" e_stop="81859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCCTCTCTATTTTCTCTCTCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG</genome_strand>
        <mrna_strand>ATTTTCCTCTCTA-T-T-T-TCTCT--GTCTATGTTGAGTTTTCATCTTCCTTGTCTAATTCTACTTCTTTTTTTCAATATTAATTGCGATCCTCATTTATAGTACTCATCAC-AACTTTCTTAGTAACAATTCGATAGTCCAATTTTT-CACTTCTTGATTCTCCTCTAAACTCCTAATACC---AAAA-AAAA-TTAGA--AAATAGTATGGAGGTAGCAAGAGTTTATGAAGGTTCTAACAATTGCTTCATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGGTATCTAACTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCCATGGTAAATTTCGACCAAGATCGAGTACCAAAGTCTAAAATGAGGTCATTTTTAGCACAACTTGATCAAGACGATAATAGCAACAACGATGACAATTACAA-T-T-ATCACCTAAGTGAAAAGAAGAGACGATTGTTACCGAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAACTACAGACTCAATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617741" ref_strand="+" ref_description="SGN-E617741 [66594]">
      <seq>ccttccatattttcctctctattttctctgtctatgttgagttttcatcttccttgtctaattctacttctttttttcaatattaattgtgatcctcatttatagtactcatcacaactttcttagtaacaattcaatagtccaatttttcacttcttgattctcctctaaactcctaataccaaaaaaaattagaaaatagtatggaggtagcaagagtttatgaaggttctaacaattgcttcatacttccaaatgaaattcttcctcctacttctaattgggtatctaactcttcctccattttccatggctctgtatccatggtaaatttcgaccaagatcgagtaccaaagtctaaaatgaggtcatttttagcacaacttgatcaagacgataatagcaacaacgatgacaattacaattatcaccaaagtgaaaagaagagacgattgttaccgaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaactagctaaagaaactggattgcagcctaggcaagttgctattaggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaagtaaagactcaatatgattgtctcttcaaagagaatgagagcttgagaaatgaggtccatttactcaaagataagttgatcaacagagtaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80407" stop="82622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80715" g_stop="81011" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="312" r_length="288" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="707" r_length="395" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82282" g_stop="82322" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="748" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E617741" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80715" e_stop="81011"/>
          <exon e_start="81462" e_stop="81859"/>
          <exon e_start="82282" e_stop="82322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGG</genome_strand>
        <mrna_strand>TCTCTGTCTATGTTGAGTTTTCATCTTCCTTGTCTAATTCTACTTCTTTTTTTCAATATTAATTGTGATCCTCATTTATAGTACTCATCAC-AACTTTCTTAGTAACAATTCAATAGTCCAATTTTT-CACTTCTTGATTCTCCTCTAAACTCCTAATACC---AAAA-AAAA-TTAGA--AAATAGTATGGAGGTAGCAAGAGTTTATGAAGGTTCTAACAATTGCTTCATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGGTATCTAACTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCCATGGTAAATTTCGACCAAGATCGAGTACCAAAGTCTAAAATGAGGTCATTTTTAGCACAACTTGATCAAGACGATAATAGCAACAACGATGACAATTACAA-T-T-ATCACCAAAGTGAAAAGAAGAGACGATTGTTACCGAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAACTAGCTAAAGAAACTGGATTGCAGCCTAGGCAAGTTGCTATTAGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAAGTAAAGACTCAATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTTACTCAAAGATAAGTTGATCAACAGAGTAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454541" ref_strand="+" ref_description="SGN-E454541 [cSTS-23-L15]">
      <seq>aaaaaatctcccttccccttccatattttcctctctattttctctgtctatgttgagttttcatcttccttgtctaattctacttctttttttcaatattaattgtgatcctcatttatagtactcatcacaactttcttagtaacaattcaatagtccaatttttcacttcttgattctcctctaaactcctaataccaaaaaaaattagaaaatagtatggaggtagcaagagtttatgaaggttctaacaattgcttcatacttccaaatgaaattcttcctcctacttctaattgggtatctaactcttcctccattttccatggccctgtatccatggtaaatttcgaccaagatcgagtacaaaagtctaaaatgaggtcatttttagcacaacttgatcaagacgataataacagcaacgatgacaattacaattttcaccaaagtgaaaagaagagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgccccgtgcaagactaaancacttgagaagaattatgatgtcctttaagctagctttgataaactnaagaactcatatgattgtctcttcaaagagaatgagagcttgagaaatgangtacatttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80407" stop="82171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80715" g_stop="81011" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="328" r_length="288" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81871" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="735" r_length="407" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E454541" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80715" e_stop="81011"/>
          <exon e_start="81462" e_stop="81871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTC</genome_strand>
        <mrna_strand>TCTCTGTCTATGTTGAGTTTTCATCTTCCTTGTCTAATTCTACTTCTTTTTTTCAATATTAATTGTGATCCTCATTTATAGTACTCATCAC-AACTTTCTTAGTAACAATTCAATAGTCCAATTTTT-CACTTCTTGATTCTCCTCTAAACTCCTAATACC---AAAA-AAAA-TTAGA--AAATAGTATGGAGGTAGCAAGAGTTTATGAAGGTTCTAACAATTGCTTCATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGGTATCTAACTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTATCCATGGTAAATTTCGACCAAGATCGAGTACAAAAGTCTAAAATGAGGTCATTTTTAGCACAACTTGATCAAGACGATAATAACAGCAACGATGACAATTACAATT-T--TCACCAAAGTGAAAAGAAGAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCCGTGCAAGACTAAANCACTTGAGAAGAATTATGATGTCCTTTAAGCTAGCTTTGATAAACTNAAGAACTCATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGANGTACATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463090" ref_strand="+" ref_description="SGN-E463090 [cPRO-13-H5]">
      <seq>aaaatctcccttccccttccatattttcctctctattttctctgtctatgttgagttttcatcttccttgtctaattctacttctttttttcaatattaattgtgatcctcatttatagtactcatcacaactttcttagtaacaattcaatagtccaatttttcacttcttgattctcctctaaactcctaataccaaaaaaaattagaaaatagtatggaggtagcaagagtttatgaaggttctaacaattgcttcatacttccaaatgaaattcttcctcctacttctaattgggtatctaactcttcctccattttccatggccctgtatccatggtaaatttcgaccaagatcgagtacaaaagtctaaaatgaggtcatttttagcacaacttgatcaagacgataataacagcaacgatgacaattacaattttcaccaaagtgaaaagaagagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80407" stop="82105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80715" g_stop="81011" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="326" r_length="288" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81806" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="668" r_length="342" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E463090" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80715" e_stop="81011"/>
          <exon e_start="81462" e_stop="81806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAAT</genome_strand>
        <mrna_strand>TCTCTGTCTATGTTGAGTTTTCATCTTCCTTGTCTAATTCTACTTCTTTTTTTCAATATTAATTGTGATCCTCATTTATAGTACTCATCAC-AACTTTCTTAGTAACAATTCAATAGTCCAATTTTT-CACTTCTTGATTCTCCTCTAAACTCCTAATACC---AAAA-AAAA-TTAGA--AAATAGTATGGAGGTAGCAAGAGTTTATGAAGGTTCTAACAATTGCTTCATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGGTATCTAACTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTATCCATGGTAAATTTCGACCAAGATCGAGTACAAAAGTCTAAAATGAGGTCATTTTTAGCACAACTTGATCAAGACGATAATAACAGCAACGATGACAATTACAATT-T--TCACCAAAGTGAAAAGAAGAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396957" ref_strand="+" ref_description="SGN-E396957 [TUS-44-H1]">
      <seq>ttccttgtctacttctacttctttttctcaatattaaatgtgatcctcatttatagtactcatcacaaactttcttagtaacaattcaatagtccaatttttcctattcttgatcctcctctcaactccaaataccaaaaaaataaaatttagaggataaaaaatggaggtagcaagagttcatgaaggttctaacaatggctttatacttccaaatgaaattcttcctcctacttctaattggatatctaattcttcctccattttccatggctctgtatcgatggtaaatttcgatcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtagcaatgatgacaattacaattatcatcaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctagacaagttgctatttggtttcaaaatcgacgagcacgatgcaaaacgaaacaaattgaaaaggattatgatgtccttaaagctagctttgatgatttgaagactcaatatgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80440" stop="82126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80740" g_stop="81011" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81826" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="637" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E396957" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80740" e_stop="81011"/>
          <exon e_start="81462" e_stop="81826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGT</genome_strand>
        <mrna_strand>TTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAAAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGATTTGAAGACTCAATATGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277529" ref_strand="+" ref_description="SGN-E277529 [cLER-3-P15]">
      <seq>tccttgtctacttctacttctttttctcaatattaaatgtgatcctcatttatagtactcatcacaaactttcttagtaacaattcaatagtccaatttttcctattcttgatcctcctctcaactccaaataccaaaaaaataaaatttagaggataaaaaatggaggtagcaagagttcatgaaggttctaacaatggctttatacttccaaatgaaattcttcctcctacttctaattggatatctaattcttcctccattttccatggctctgtatcgatggtaaatttcgatcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtagcaatgatgacaattacaattatcatcaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80441" stop="81987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80741" g_stop="81011" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81687" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="497" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E277529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80741" e_stop="81011"/>
          <exon e_start="81462" e_stop="81687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGC</genome_strand>
        <mrna_strand>TCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349946" ref_strand="+" ref_description="SGN-E349946 [cTOS-3-H20]">
      <seq>atggctttatacttccaaatgaaattcttcctcctacttctaattggatatctaattcttcctccattttccatggctctgtatcgatggtaaatttcgatcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtagcaatgatgacaattacaattatcatcaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctagacaagttgctatttggtttcaaaatcgacgagcacgatgcaaaacgaaacaaattgagaaggattatgatgtccttaaagctagctttgatgaattgaagactcaatatgattgtctcttcaaagagaatggaagcttgagaaatgaggtacatttactcaaagagaagttgatcaacagagtaaaagggaaggaaattttagaatttattagtccacttgatcatgtagaacctcaaaatccttctattggagttgattcaaatttagcaatggtgaagtgcaagcaagaagatgcaaaaagtgatgttcttgattcggacagtccgcgttttactgacggagattacacttcatatttggagcctgctgattcttcaaatgtatttcagacagaacactctaatttttctcgagaaatgacacattatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80637" stop="82868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80937" g_stop="81011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="473" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82282" g_stop="82568" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="759" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E349946" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80937" e_stop="81011"/>
          <exon e_start="81462" e_stop="81859"/>
          <exon e_start="82282" e_stop="82568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTT</genome_strand>
        <mrna_strand>ATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAG-AAATGACACATTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349842" ref_strand="+" ref_description="SGN-E349842 [cTOS-3-O8]">
      <seq>atggctttatacttccaaatgaaattcttcctcctacttctaattggatatctaattcttcctccattttccatggctctgtatcgatggtaaatttcgatcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtagcaatgatgacaattacaattatcatcaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtacaattagctaaagaaactggattgcagcctagacaagttgctatttggtttcaaaatcgacgagcacgatgcaaaacgaaacaaattgagaaggattatgatgtccttaaagctagctttgatgaattgaagactcaatatgattgtctcttcaaagagaatggaagcttgagaaatgaagtacatttactcaaagagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="80637" stop="82605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80937" g_stop="81011" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81462" g_stop="81859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="473" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82282" g_stop="82305" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="497" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E349842" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80937" e_stop="81011"/>
          <exon e_start="81462" e_stop="81859"/>
          <exon e_start="82282" e_stop="82305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATGGTAAGGGTTCTTCAACGAAAAATTATATTATTTATACATGGTAAAAATTAAATATTGTTTATGTATGTATAGTTGTTGAACTCCTTTCAGCTAGTTTCAGCTAGTTCGTGTGTTTACTTTTCACATACTTTCAACTGAGTTAAGGAAAATTCTGATTTCACCACTGATGTGCGGGTGATCCTTTGATAATCAAGAGATTATGATCATCAATTATAGACCTAAGGTTGTAAATATTGACAAGGAAATGATTGAATTATCTGTTCAATTTTTAGATGCCTTGTGCCCTACTTTTGTTTTCTCATGTTAATATAAAAAGCTTAGTAACTCAGTTGATTGACTAGCTGAACTTTTCTTCTAATTGGTGAGTGTTTGATTTTCCACCCAATAATCTCGTCGTGCATTTATGAAATTGAAATGAACCAAGATTTGTGAACTTTTGCTCTGTTTCAGGCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTG</genome_strand>
        <mrna_strand>ATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTACTCAAAGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202838" ref_strand="+" ref_description="SGN-E202838 [cLEB-1-G24]">
      <seq>gcacgagtcaagatcgagtacagaagtctaaaaagaggtcatttttagcacaacttgatcaagacgacagtagtggcaatgatgacaattacaattatcattaccaaagtgaaaagaaaagacgattgttaccaaaacaagttgagtatcttgagaaaagtttcgaggtagaaaacaagcttgaacctgaaaggaaagtgcaattagctaaagaaactgtattgcagcctatacaagttgctatttggtttcaaaatcgacgagcacgatgcagaacgaaacaaattgagaaggattatgatgtccttaaagctagctttgatgaattgaagactcaatatgattgactcttcaaagagaatggaagcttgagaaatgaggtacatttactcaaagagaagttgatcaacagagtaaaagggaaggaaattttagaatttattagtgcacttgatcatgtagaacctcaaaatccttctattggagttgattcaaatttagcaatggcgaactgcaagcaagaagatgcaaaaagtgatgttcttgattcggacagtccgcgttttactgacggagattacacttcatatttggagcctgctgattcttcaaatgtatctcagacagaacactctaatttttctcgagaaaatgacacattatgcttgccaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="81184" stop="82877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81481" g_stop="81859" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82282" g_stop="82577" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="676" r_length="296" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E202838" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81481" e_stop="81859"/>
          <exon e_start="82282" e_stop="82577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGA-TCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACT</genome_strand>
        <mrna_strand>GCACGAGTCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTGGCAATGATGACAATTACAATTATCATTACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTGCAATTAGCTAAAGAAACTGTATTGCAGCCTATACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAGAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGACTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTGCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGCGAACTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATCTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTGCCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281552" ref_strand="+" ref_description="SGN-E281552 [cLEL-1-P21](-)">
      <seq>aggacatcataatccttctcaatttgtttcgttctgcatcgtgctcgtcgattttgaaaccaaatagcaacttgtctaggctgcaatccagtttctttagctaattgtactttcctttcaggttcaagcttgttttctacctcgaaacttttctcaagatactcaacttgttttggtaacaatcgtcttttcttttcactttggtgatgataattgtaattgtcatcatttctactactgtcgtcttgatcaacctgtgctaaaaatgacctctttttagaattctgtactcgatcttgactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="82086" stop="81184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81786" g_stop="81481" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E281552" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81786" e_stop="81481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACATCATAATCCTTCTCAATTTGTTTCGTTTTGCATCGTGCTCGTCGATTTTGAAACCAAATAGCAACTTGTCTAGGCTGCAATCCAGTTTCTTTAGCTAATTGTACTTTCCTTTCAGGTTCAAGCTTGTTTTCTACCTCGAAACTTTTCTCAAGATACTCAACTTGTTTTGGTAACAATCGTCTTTTCTTTTCACTTTGGTGATGATAATTGTAATTGTCATCATTGCTACTACTGTCGTCTTGATCAAGTTGTGCTAAAAATGACCTCTTTTTAGACTTCTGTACTCGATCTTGA-TCGAAA</genome_strand>
        <mrna_strand>AGGACATCATAATCCTTCTCAATTTGTTTCGTTCTGCATCGTGCTCGTCGATTTTGAAACCAAATAGCAACTTGTCTAGGCTGCAATCCAGTTTCTTTAGCTAATTGTACTTTCCTTTCAGGTTCAAGCTTGTTTTCTACCTCGAAACTTTTCTCAAGATACTCAACTTGTTTTGGTAACAATCGTCTTTTCTTTTCACTTTGGTGATGATAATTGTAATTGTCATCATTTCTACTACTGTCGTCTTGATCAACCTGTGCTAAAAATGACCTCTTTTTAGAATTCTGTACTCGATCTTGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434771" ref_strand="-" ref_description="SGN-E434771 [STM-60-M20]">
      <seq>ctggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaactaaagactcaatatgattgtctcttcaaagagaatgagagcttgagaaatgaggtccatttactcaaagataagttgatcaacagagtaaaagggaaggaaacttcagaatccattagtccacttgatcatgtagaacctcaaaatccttctattggagttgcttcaaagttaccaatggtggtgtgcaagcaagaagatgcaaaaagtgatgttcttgattcagacagcccgcgttttactgacggcgattatacttcatttttggagcctgctgattcttcaaatgtatttcagacagaacactctaatttttctcaagaaaatgacacattatgcttcccaaaacttgaagaagatcatcatcatgatgatttacctgttaattcttgtcatttgggttttcaaattgaggatcaatcttggttctcacattattgagttttcacttcaagatcatataaagggaaaagaagccaagtgctacattccggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="81396" stop="82981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81696" g_stop="81859" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82282" g_stop="82670" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="553" r_length="389" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E434771" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434771" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81696" e_stop="81859"/>
          <exon e_start="82282" e_stop="82670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAACATCATCATCACGATGATTTACCTGTTAATTCTTGTAATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGG</genome_strand>
        <mrna_strand>CTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAACTAAAGACTCAATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTTACTCAAAGATAAGTTGATCAACAGAGTAAAAGGGAAGGAAACTTCAGAATCCATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGCTTCAAAGTTACCAATGGTGGTGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCAGACAGCCCGCGTTTTACTGACGGCGATTATACTTCATTTTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCAAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAAGATCATCATCATGATGATTTACCTGTTAATTCTTGTCATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409901" ref_strand="+" ref_description="SGN-E409901 [PPI-15-K12]">
      <seq>ctggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaactaaagactcaatatgattgtctcttcaaagagaatgagagcttgagaaatgaggtccatttactcaaagataagttgatcaacagagtaaaagggaaggaaacttcagaatccattagtccacttgatcatgtagaacctcaaaatccttctattggagttgcttcaaagttaccaatggtggtgtgcaagcaagaagatgcaaaaagtgatgttcttgattcagacagcccgcgttttactgacggcgattatacttcatttttggagcctgctgattcttcaaatgtatttcagacagaacactctaatttttctcaagaaaatgacacattatgcttcccaaaacttgaagaagatcatcatcatgatgatttacctgttaattcttgtcatttgggttttcaaattgaggatcaatcttggttctcacattattgagttttcacttcaagatcatataaagggaaaagaagcctttgtgctacantttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="81396" stop="83009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81696" g_stop="81859" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82282" g_stop="82670" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="553" r_length="389" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E409901" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81696" e_stop="81859"/>
          <exon e_start="82282" e_stop="82670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAACATCATCATCACGATGATTTACCTGTTAATTCTTGTAATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGG</genome_strand>
        <mrna_strand>CTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAACTAAAGACTCAATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTTACTCAAAGATAAGTTGATCAACAGAGTAAAAGGGAAGGAAACTTCAGAATCCATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGCTTCAAAGTTACCAATGGTGGTGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCAGACAGCCCGCGTTTTACTGACGGCGATTATACTTCATTTTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCAAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAAGATCATCATCATGATGATTTACCTGTTAATTCTTGTCATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434770" ref_strand="+" ref_description="SGN-E434770 [STM-60-M20]">
      <seq>ctggattgcagcctaggcaagttgctatttggtttcaaaatcgacgtgcccggtgcaagactaaacaacttgagaagaattatgatgtccttaaagctagctttgataaactaaagactcaatatgattgtctcttcaaagagaatgagagcttgagaaatgaggtccatttactcaaagataagttgatcaacagagtaaaagggaaggaaacttcagaatccattagtccacttgatcatgtagaacctcaaaatccttctattggagttgcttcaaagttaccaatggtggtgtgcaagcaagaagatgcaaaaagtgatgttcttgattcagacagcccgcgttttactgacggcgattatacttcatttttggagcctgctgattcttcaaatgtatttcagacagaacactctaatttttctcaagaaaatgacacattatgcttcccaaaacttgaagaagatcatcatcatgatgatttacctgttaattcttgtcatttgggttttcaaattgaggatcaatcttggttctcacattattgagttttcacttcaagatcatataaagggaaaagaagcctttgtgctacatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="81396" stop="83009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81696" g_stop="81859" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82282" g_stop="82670" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="553" r_length="389" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E434770" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81696" e_stop="81859"/>
          <exon e_start="82282" e_stop="82670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTCAAGAAATCATTTATACATTGTTTGGATATATCAATAATGATACTTATTAGATGTGTACAAAGGTAGATTTTTTGAAAACATTTATGTTACAAGATATCTGTTTAGCCGTGAAATTTGAAATGTGATTGGGAGTTCTACACACAAAAATTTCAAATTTTGTCCAAGTAAATGTAAACCCCAACTCCTAACTTAAGTTCAAAAACCATAACTTGTGCGCATTTGACCATGTTTTATTGATTTTGGTCAAACATGTCTTTCAGAGTTCAAACTTTGTAAAAATTGAAGTTTTTTTACGATCAAACGTCTTAAATTTTAAAGTTTCAACTTTAAAATCTACTGTCTAACATGTGCAAAATCGCAAAAATATGATCTAGGTCTTCACTTATTTTTTCCCCTTTTGTGTTCAACAGGTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAACATCATCATCACGATGATTTACCTGTTAATTCTTGTAATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGG</genome_strand>
        <mrna_strand>CTGGATTGCAGCCTAGGCAAGTTGCTATTTGGTTTCAAAATCGACGTGCCCGGTGCAAGACTAAACAACTTGAGAAGAATTATGATGTCCTTAAAGCTAGCTTTGATAAACTAAAGACTCAATATGATTGTCTCTTCAAAGAGAATGAGAGCTTGAGAAATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTTACTCAAAGATAAGTTGATCAACAGAGTAAAAGGGAAGGAAACTTCAGAATCCATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGCTTCAAAGTTACCAATGGTGGTGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCAGACAGCCCGCGTTTTACTGACGGCGATTATACTTCATTTTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCAAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAAGATCATCATCATGATGATTTACCTGTTAATTCTTGTCATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542583" ref_strand="+" ref_description="SGN-E542583 [TUS-63-P11]">
      <seq>tttctctaccatacgcattgattcgcctagacgaccggccaactcaccggagttttccccgtcgagtacgggtcaacgacttccttttctccagatttaacaaactttccagaaatttctcgagaacagtctgttatttatttttataatatatatatacaaacacatatattcctgcttcggtttcatcaacgatacagagaaaaaaagcacagtgaaagagaagagaagaagatatgagtgttgattactataagacactgaaagtgtcacgtaatgcaagtgaagaagatttgaagaaatcgtataagagattggccatgaaatggcatccggataagaatagtgagaataagaaggaagctgaagcgaaattcaagcagatatctgaggcttatgatgtgctgagtgatcctcagaagcgtcagatctatgatatatacggtgatgaggcactgaaatctggtcaattcgatccatcctcacctagtgatagaagaggatttaagttcaattcgcgtgatgcggaagatattttcgcggaattttttggtggatcggagggtattagtaggaagtactgggtggtactgtacggattaggaaagctgcgccggtggagaacaagttgccgtgtaccttggaggagttatacaagggctctaagaggaaaatgaagatttcaggattgttcttgatggcgctggtaagcccacaactattgaagaagtcttggcaatacacataaaacctggttggaagaaggcacaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94798" stop="90319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94498" g_stop="93793" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93792" i_stop="90688" i_length="3105">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90687" g_stop="90619" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="775" r_length="68" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E542583" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94498" e_stop="93793"/>
          <exon e_start="90687" e_stop="90619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTA-TAGTAGG-AGTACT-GGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATAAGTGGTTTGTGTAGTATGAAATTACAGAGAAGAAACATGATATCAAATTCCAGAGTTGATGATACTGTTTTGAATGTGTAGATGTGATGTTACAGTTGGAACTAAGCCGAACGAGTTTTTTGCTTTTTGACCATTTAAAATCAACTTTTTTCATCAACCCTTTGCTAACTTTTGTGACAACTAAGTTGTCCTTAATATGCTCTTACCATCTGCTTCTTGATAAAATGAGTGATAACTCTGGATGTTAGTCTAATTCCTTTGTGTGGACTGGTGGGAGATTGATCGCTTATTTATAACCCAATTTCCAACAGTGAGAGACTTATTGGACATAACTTCTAGGAGTTACTTTTTAGTTATAACAGAGAATAGTACACTTGGTTTCGGGAGAAAACCTTTTAGATATCTCTTCAAGCTCAACGAGGAAAATGATAATATGTTCTTTGAAGCTTTCATTTTGAAAATGATGGAATTTGAGGTTAGGTTGCATGAACACCACCCTCCCCAGACCCCACTTGTGGGATTACACTATGTATGTTGTTGTAAAATTGAAATTTTTGTGAGTTTGCGGATTGTAGAATGATTTGTTTTAAAATAATACAACATCTTTGTTGCTTATCGATCTGAATATTGTCTGAGGTAGTGTTTTTCCCTATATTTTTACATCCAGTTAGTTAGACTTAATAATTCAGATGCAAGACTACTCTTTTGCTTTGAGGAATTACATATTGTTACTGTTACAAAACACGCACGCTTCTATCATCTATTATTACTTAAATCTTCCTATGCAACAATACTCTTTTGTTTTGAGGAAGTGCATATTTTTACTGTTAAGGAGCATCTGCTTCTATCCTCTATTAGCACTAAACGAAAATTAAGATAAGCACGAAAATGAAAGCTTCTATAAATACAGATACACCCAATACGTCGAAACTCATTGCCCGTGGATAAAGAAAAACCGTTTCAACATCAAAAACAAAAAAAACTAGAGCAAACATATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATACCCGACTCATAAGTAGAAAGTTTCTCTGGCCCTTTGCTAATCGGGGCTAACACTCCGGAAATGAAAAATGCCAAAATAGGAACAAGGATGGATATTATTAGAAATGCCCAAAAAAAAATCATATTCGTAGAGCAGAAACATAAACGCACTCCTATGAACGTGGAAAATATACTGGATTCAATTGGTCGATTCGAATTGGAATTGTCAAGTCATCCATAACTATTTAGTCAAAACAAGAATTCATTTTGGTCGAACCGACTAGTTTGCTTTGTTTATTGGTTTATTGTAGGGCATATCTCATTGCAAGATTCATCGACTGGAATCCGATTTTATTTCCATTATACTTATTTTCATTTTATTTAGTTAGTAGAACCTTCTAACAATATATTACTCTTCGACAAATTCTCTTGTTTCTCTTGTTTTTCTCTCTAAAGACGGGGAATTCTAAATTAATTACTTATCTGATTTCTTCTTTAACTTATTTGATTTCTTCTTTAATTATAAATTCTTTAAAGATTTCTATTTATTTCTATAAATAGAATCAGGAGGCCTTTATTTTCATTTTTTTCTTAGTGATTTAGAATAGAACACGTAATCAAATAGAAGAGAATGTATAGGAATTGCCATCTCAAGATTTAGAAGATCTTGTGTTGGTATATTCCTTATTATTGAACTAATATTTAATAATAGTATTAGGATTCGAATCTAGGTGGAGGGGTTTTTCTTGGTTGAATACAGAAAAAGAAGACTACCTTTTTTGTTGTGCTTCGCTAGGTCGAGGTAAGTAAGGTACACGAAGGAAAAGCCTATTTGACAATGAAAGTGACCAAAGATATTCATTTTTCAAAAAACTTTAGCTTGTACACAAACACAGCAGGCCTTTCCTAAATCCATGTGAATTCCTCGTCGTAGTTTTGCATTTCACCAGGCCCGTGAAATGAGTTGACTTCCAAAATTCAATAAGATTGGGGATATCAAGAGAAAGGGAGTCTCACTAATTCTTTTATTGTAGATATGAATATGTAATTCGCCTCCGAAGATTAATGACGAAAGGTTGGTTTGTTTATCTGCAATTGCAAAAATCAATATCTATTGGATCCATTGATATGCGTTTTTTCTTTCATCTGCTTAAACGATTGCCGTGAGTAAACTTATAGGAATAATTTGATTTCATTTAGTTACAAGCAAGAAATAATAATGAAGAAATCAAAACTACTTTTCCTACAGAATATAAGTTTTTTAACATTGCTTAGTTATGATCAGTAGGGTCTAGGGAGGTAGATTAGTCATACTGCATGTTCCTTTCCTGGTTGCATTGATGATATAGTTTCTGACAAAAAGTACAGCTGATGGGAGGACAAAAATCCTGGCTACTAAAGCAGTATTGCCTTTTTGGAGGTGAGGGGGTAACACAGAAATGACTTAACAGTAAAATACTGTGAACATGTGATTCTACCGTTGCATGTATTTAATATAGAAGTTACGACTAATTAGTTTGCACTTAATGGTTCTAATACTAGTTCTTAGTCTCATCATTTTTATCTTCCATGTGTGAACTATATTTGCAGTAAGCCCACAACTATTGAAGAGGTCTTGGCAATACACATTAAACCTGGTTGGAAGAAAGGCACAAAAAT</genome_strand>
        <mrna_strand>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGA-GGGTATTAGTAGGAAGTACTGGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTC-AGGATTGTTCTTGATGGCGCTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCCACAACTATTGAAGAAGTCTTGGCAATACACATAAAACCTGGTTGGAAG-AAGGCACAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542533" ref_strand="+" ref_description="SGN-E542533 [TUS-63-O6]">
      <seq>tttaagttcaattcgcgtgatgcggaagatattttcgcggaattttttggtggatcggatgggtatagtaggagtactggtggtactgtacggattaggaaagctgcgccggtggagaacaagttgccgtgtaccttggaggagttatacaagggctctaagaggaaaatgaagatttcaaggattgttcttgatggcgctgggtaagtaaataccttacattatacaaacaccagctaatatttctgaataacatcctctatccatatttgctattagaatctgttatctagttttctcaataagaaatttacattactttgcggaatgaattacatctggcctattgacggggataattcgagttgatagtagtgatttgatcttttgtgtggtgaatttgacagaacattgcctagtaaatcatgtccatcaaggttggttatagttttcatatgaatctggatccttaggaagctactcccatctctcaaccacttgaaactgtgcctttgagattatcccacagtaatgaatcagaactgttcatcatatgggggttatgcatgaattatatagaatgagtgaatgatattggtgactcgagggaaaattcttctttgattatcattggtaaaagtacatttaacttaaaattatgtgtattagttgggatagcaacgatgcacgaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94295" stop="93000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93995" g_stop="93300" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E542533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93995" e_stop="93300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</genome_strand>
        <mrna_strand>TTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299629" ref_strand="+" ref_description="SGN-E299629 [cLEW-20-O18]">
      <seq>ttaagttcaattcgcgtgatgcggaagatattttcgcggaattttttggtggatcggatgggtatagtaggagtactggtggtactgtacggattaggaaagctgcgccggtggagaacaagttgccgtgtaccttggaggagttatacaagggctctaagaggaaaatgaagatttcaaggattgttcttgatggcgctgggtaagtaaataccttacattatacaaacaccagctaatatttctgaataacatcctctatccatatttgctattagaatctgttatctagttttctcaataagaaatttacattactttgcggaatgaattacatctggcctattgacggggataattcgagttgatagtagtgatttgatcttttgtgtggtgaatttgacagaacattgcctagtaaatcatgtccatcaaggttggttatagttttcatatgaatctggatccttaggaagctactcccatctctcaaccacttgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94294" stop="93190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93994" g_stop="93490" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E299629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93994" e_stop="93490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACT</genome_strand>
        <mrna_strand>TTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314046" ref_strand="+" ref_description="SGN-E314046 [cTOA-19-G19]">
      <seq>tttattgatgtctgtagttactagtgttattactccagccataaaaagcaaatcttgttgtttcatgagtttattgcattatccaccattgatgactgctagctaccgttgttttcgtgcccgaagtaggctttcgtgctgtaatagtcacgctgatgatgatatgcgtgccctctttcagattctgccatgtgacttacgggacacccttttgtgtgaccccagccaagatcaactagtagaggtgattttagatttaggctgtttgccacaagcacattacataaatgattctgggaggcgttaccttcgagatactgaggtctctatggaagaaatacaatgtgtcctcaaggaaattggacaatttggaggagataacagagctggcattgagggtactttgcatcgcatttccgcaattaggaataggaagggtgaagtcattggtttgacttgccgagttggcagggccagaggacagattgacatggtgcgggacttgcttgattttggtgaaagcatcttgtttgttggacgacctggtgttggtaaaactacggttgtgcgagagatatctcgtgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="94716" stop="98558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95016" g_stop="95196" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95197" i_stop="96852" i_length="1656">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96853" g_stop="96915" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="244" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96916" i_stop="97471" i_length="556">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97472" g_stop="97549" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="322" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97550" i_stop="97817" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97818" g_stop="98035" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="540" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98036" i_stop="98210" i_length="175">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98211" g_stop="98258" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="588" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E314046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95016" e_stop="95196"/>
          <exon e_start="96853" e_stop="96915"/>
          <exon e_start="97472" e_stop="97549"/>
          <exon e_start="97818" e_stop="98035"/>
          <exon e_start="98211" e_stop="98258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAGGTACTTTTCCTCTTTAAGTTTTCTGTTTTTTTGTGTGTTCTGGTCATTTGCATATACATTTTAGGGATTTACAAGTAGTAGAAGGAAATGAGCTGGTATAGTCCAAATAGAGCGGAATGGATGTAGAGGATTTTCATGTAGCTTACCTGAAATACTTAGGGATTGAGGTATAATTAGTAAGTTCATTGTGTCTAAAGTTCTAAAGTTCCAATCTTTTACCCCTTTTTAGGATTGGTAGTGGAGGGAACAAGTTTCAAGTTGTAGTTCAGGATATTTGACACTCACATTTGGGTGTATATAATGTGAAACTTGTTAGAACTTAGAAGTTAGGGTTAGGATGTGTATTGAAAATGTGCTTATGTAAAGATCCTAGAAATAGAGGAACAAAGGGAAAAAAGACGATGTTTTTTACATGTCAGCTTGATTTTGAAGTTTAAGGGGAAGTTGAGGGAGAAATCATTCATTTAATTGATGCAAGTTAGCTTCTTGATAAGCTATTTTAGATGGTCATATCTTGATAACCATAAAGGCTTACCAACTAAGTTTGGATTGAGATTTAGTGTTATTGGGTATACTTAAAGAATTTGATGTTAGTGTAGGAATAAGTGGGACATTTAGAGAACTCCCAATTTGAAGAACCCCTAATTTGTACCTAAAGATGAATTAATTTGAATGAAGTTGGCCCAAATGGAGCGGAATGGATAGTAATGATTTGTGTAGCCAACTCCTACTAGTTTATCAAGGTGTAGCAGAAGTGGTGGTTGTACTGGCACTACTTGTTGCAGGGCTTGTCGTGACACTGAAACTTGGAAAAGCGGTGGAGTAGCTAAGATTTCTATATTTCCTATGAAGTTTGTAGCACTGGTTCCCTGGGAAAATCTGAGGAAGTGAACTTTTCTTATATCAAACACAAGTCTACAAGACAGTTAATAATGGGAAATTAGGAATAATAAATAAACATGGTATAGTGTGTGCCAAAAATGGGAGAATGGAACAGAAGAGGAGGTACGGAAGCTCAAAAAATTAGAAGGAGATGTCCCAGGCGGCATATGGTGGACTATCTGGAGGGAAAGGAATTTAAGACGTTTTGAAGGAAAAAACAGCCGAATCCAGAAGATAAAGCTTGATTGCATTCTGCTTTTGGATATTTGGTGTAAACAGGAGTACATAAATGACTCTGAGATCATATTACAATTCCTGGAGTCTGTATAGTTATAGTAGAATTTTTGTGTAGATTTTTAGCTTTCTTTCCTTGTAACTATGGCCTCCACAGGCTCTTTTGATATCAATATAAATCTGTTACAATCTCAAAAAAAGAAGAAGGGAGAGTGGAGATAAAACGAGGTAACTGCTTGTTCCAGGAGTGTTGCACAAGAACCATTTTACCTCCCTTAATTATCAGTATAGACTATGGCTTTTTGTTTGTATTTCATTCTTGAGGGCTATGTACATTACATTTGCAAGTTTGTGTTTTACATTTCTTTGTAATCTATGCCCAAACAAAAGGTAAGGATAGCTGGGGTTGGAGGTTCATTTAGAATTGTGATTTTGATTTCTTGCATCAGCTGAATTATTGAAATATTTTCTTTATGTAATTGAAGATCATGCTTTAAAATGAACTTAAAATGATTTATTTTTCTTTTCTTCTTTTTGCAGATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAGGTATCTATATCTAACAATGTGAACACTTCCTTTGACAAAGGGATGTAGTATGTGTTTTTTCACCAGATTTCTCATCGATTTTTTTAGCTTCACTCTCTGTATCTCGTAAATAGCAATATGTGATGTTTGCCTTAAATCTTACTGTCAGCTAATAAAATGTTCTTGATTTGCTAACGTTATAGTTTACCATCTTAAATTTGCCTACAAAAAGCGGTATCCTTTGTTTTGCTAATATTCTGGTGTCAAAGAGGTCTCTTGCTGGAAAAAGTATGATATGTGTTCTGGAAATTGTCATTTTATGAATCTGACTAAATTTATCTGCTTACCACAAACATGTTTCAGCTGATATGCCTTTCACGAGATGACAGGATGAGTTTCATATTATCACACGGTTACCAGTAATGTTTATATGGCTTGATAATTATTTGAGATCCGTGTTATTCTCATAGGTTACCAGTATTCAGTAATGCTTATGCATGATAATAACTATGCTGTGTGTATTATTATGCTATGATATTACTATACTGACCAAAAAGATTGTATGATATTTTTGTAGGTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAGGTAAACACTAAAGGTATTGAAATTACCTACTTTATGAAAATATTGAAGTATATACTGTCACGATAATGACTAGTGTTGTTGCTTAGAAGCACCAGAAGCTTATTGTAGTTTACTAGGAAGTGAATTAGAGAAAAGGGAAGAAATTTGTGGTTTTGAAGGAATATAAAGAGCAAAAACTGGACACCAGAAGATTATTTGAAGAGCTTAATTATATCTGCTTCTTCTTTTTTTGAAATGTGAAGTTATATCTGTTTCTTTTGTTAAGCAGGTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACGGTAAGTGAGTTACATATAGATGTAAATCATATCTGACCCGCCTGCGGTGGCCTCAATTTTTTCTAATGTGTTCTACTAAGCTGATAACCATCAAGCTTTATCACAATTGACTATACCTTGCTATCCTGCCAAGTTATTCTGTCTCTTTTTGATTTGTCTCTCTTTAATTTAACAGACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</genome_strand>
        <mrna_strand>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAG............................................................................................................................................................................................................................................................................GTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACG...............................................................................................................................................................................ACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687635" ref_strand="+" ref_description="SGN-E687635 [T3_tus_79_C20]">
      <seq>ccttttaactccgcaattacaggttgtgattgagagatggatttcaaaagcctaaatacaattaacttctgctactgctctactggagaaaaatgtatgtgtacatttgaaaacttcatatggagcttgcaatgtgatggaaatggatgttgaaaatctttgcggaggttgaaattcatcttttcacaaagttggccttctaacaagcatagtaagtactacgttttcactgattttcatactttgggtaagtgagatgaaaactctcttcttcctttctttgtcatttcacttaattttgttatataagttgatcatctacatttatctttctgtcattaaattatttatttcgtttactttgtaaaaacttagtttttcatgtttcatatcatacctagctagctacaatctttgacaaaaaaaaatatttatataattcaaatctaagtattatgttgattacctaatttttaagtgcattcacctaattaccatctcaaagtgcacaaaaaaaaaccatccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="100804" stop="102719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101098" g_stop="101182" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101183" i_stop="101977" i_length="795">
            <donor d_prob="0.953" d_score="0.94"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101978" g_stop="102419" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="527" r_length="442" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E687635" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101098" e_stop="101182"/>
          <exon e_start="101978" e_stop="102419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTGGTAAACATATTGATCATACATACGCCAACATTTCTTTCTCTTTTATTGGTTCAACGTTTCTTTCTGTTGCGTGAATAGAGAGAAAATATCCAATGCTTCCCTCTTTCTTCTAGCTACCCTCGAGTCTTGATACAGAATCCTATTCTTGACTACTGTGATCTTGAGTTGGTTTACTTGCCATAAACTTAACTGAGATTTCAGCTTATAGGATCTATCACATCATATATCATATATATTACTATAAGTGGGAACAAAAAAAATTAGAAGTTGAACTACGATTTTACCTTTACTATAAATTAAAGAAATATTAGACAAAAGTTAAATTACCGTTTTACCCCTACATTAAATTAAAATGTTATATATTATTAATAAATTAAATATTAAATAATAACTATATCTTATTGTTCTATCCGTTTTTGGCTTTTGATTTTTTTCCTAATCTAAATTAATCTCCCATTACCTATAGATGTTCACTTAATAATAATTACTCTCCCTTACTTATAGATGTTCACTTATATTATTAATTAAAGAGGGTGAATGAAGAGTTGCACGGTTTTAATTATGACTTTATGAGAGAAATGTTCACTTATTGCTCCAACAATAATAATGATTAATAAAAAGAATGAAAAGTTGGAGTAATTTAGTGTCAAAGTCAATATTATATTTTTGTAGCAAAAAGGTCTCCCGATGGTTATATAGCTAAAATGCATGGAAGTTGAACAAATTTTTCATTTCACTCTAAATACATTAGTGGATCAATACTCACTTTCATTATGTTCTTTTATTTTTTTACAGGAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAAAAAAACATCCAC</genome_strand>
        <mrna_strand>CCTTTTAACTCCGCAATTACAGGTTGTGATTGAGAGATGGATTTCAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTATATAATTCAAATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAATTACCATCTCAAAGTGCACAAAAAAAAACCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320677" ref_strand="+" ref_description="SGN-E320677 [cTOB-27-E14]">
      <seq>agaactccgcaattacaggttgtgattgagagatggagaacaaaagcctaaatacaattaacttctgctactgctctactggagaaaaatgtatgtgtacatttgaaaacttcatatggagcttgcaatgtgatggaaatggatgttgaaaatctttgcggagggtgaaattcatcttttcacaaagttggccttctaacaagcatagtaagtactacgttttcactgattttcatactttgggtaagtgagatgaaaactctcttcttcctttctttgtcatttcacttaattttgttatataagttgatcatctacatttatctttctgtcattaaattatttatttcgtttactttgtnaaaacttagtttttcatgtttcatatcatacctagctagctacaatctttgacaaaaaaaaatatttagataattcagatctnagtattatgttgattacctnatttttaagtgcattcacctaagtaccttctcaaagtgtacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="100802" stop="102707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101102" g_stop="101182" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101183" i_stop="101977" i_length="795">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101978" g_stop="102407" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="511" r_length="430" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E320677" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101102" e_stop="101182"/>
          <exon e_start="101978" e_stop="102407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTGGTAAACATATTGATCATACATACGCCAACATTTCTTTCTCTTTTATTGGTTCAACGTTTCTTTCTGTTGCGTGAATAGAGAGAAAATATCCAATGCTTCCCTCTTTCTTCTAGCTACCCTCGAGTCTTGATACAGAATCCTATTCTTGACTACTGTGATCTTGAGTTGGTTTACTTGCCATAAACTTAACTGAGATTTCAGCTTATAGGATCTATCACATCATATATCATATATATTACTATAAGTGGGAACAAAAAAAATTAGAAGTTGAACTACGATTTTACCTTTACTATAAATTAAAGAAATATTAGACAAAAGTTAAATTACCGTTTTACCCCTACATTAAATTAAAATGTTATATATTATTAATAAATTAAATATTAAATAATAACTATATCTTATTGTTCTATCCGTTTTTGGCTTTTGATTTTTTTCCTAATCTAAATTAATCTCCCATTACCTATAGATGTTCACTTAATAATAATTACTCTCCCTTACTTATAGATGTTCACTTATATTATTAATTAAAGAGGGTGAATGAAGAGTTGCACGGTTTTAATTATGACTTTATGAGAGAAATGTTCACTTATTGCTCCAACAATAATAATGATTAATAAAAAGAATGAAAAGTTGGAGTAATTTAGTGTCAAAGTCAATATTATATTTTTGTAGCAAAAAGGTCTCCCGATGGTTATATAGCTAAAATGCATGGAAGTTGAACAAATTTTTCATTTCACTCTAAATACATTAGTGGATCAATACTCACTTTCATTATGTTCTTTTATTTTTTTACAGGAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAA</genome_strand>
        <mrna_strand>AGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGGTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTNAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTNAGTATTATGTTGATTACCTNATTTTTAAGTGCATTCACCTAAGTACCTTCTCAAAGTGTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539469" ref_strand="+" ref_description="SGN-E539469 [TUS-59-D22]">
      <seq>tttgcatcatccacaggtacatgatcaaaaccagcatgttttgagggctttgagaaaccaaaaatgtttcgaaaacggtgaagttgaaggaactactgacctacatgactagaagatacatactgagtatcccaacaaaaaggtagcaaaagaaattctatgatcatccaaacattgtaatggatcaacagatacgttcttgtgagttcaattgaatccatttggtctctctttttatgttacaaaatatataagtatcagatattagtacaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="102810" stop="103686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103110" g_stop="103386" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E539469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103110" e_stop="103386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</genome_strand>
        <mrna_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548225" ref_strand="+" ref_description="SGN-E548225 [TUS-59-D22](-)">
      <seq>tttgcatcatccacaggtacatgatcaaaaccagcatgttttgagggctttgagaaaccaaaaatgtttcgaaaacggtgaagttgaaggaactactgacctacatgactagaagatacatactgagtatcccaacaaaaaggtagcaaaagaaattctatgatcatccaaacattgtaatggatcaacagatacgttcttgtgagttcaattgaatccatttggtctctctttttatgttacaaaatatataagtatcagatattagtacaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="102810" stop="103686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103110" g_stop="103386" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E548225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103110" e_stop="103386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</genome_strand>
        <mrna_strand>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282452" ref_strand="+" ref_description="SGN-E282452 [cLER-18-G13]">
      <seq>ttgcatcatccacaggtacatgatcaaaaccagcatgttttgagggctttgagaaaccaaaaatgtttcgaaaacggtgaagttgaaggaactactgacctacatgactagaagatacatactgagtatcccaacaaaaaggtagcaaaagaaattctatgatcatccaaacattgtaatggatcaacagatacgttcttgtgagttcaattgaatccatttggtctctctttttatgttacaaaatatataagtatcagatattagtacaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="+" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="102811" stop="103686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103111" g_stop="103386" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="+" ref_id="SGN-E282452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103111" e_stop="103386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</genome_strand>
        <mrna_strand>TTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376703" ref_strand="+" ref_description="SGN-E376703 [TUS-19-E14](-)">
      <seq>gaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacgattaaatgaaatcgactatgtgaattatcagcaactcggggctaataatgaaaccccttgaataggtgcactagcagtgtattcccccggatatggcaaataagtgaagaaattattgttagctagttgtgtccctcccttttacctcaactgtcaaatctctgagaagcaaatggcttatcgagagagtagtagatatttgaatctatggacaaggatgagaaaatagtcgagtggtgttctttgtttcaatgtttcatccaaccgcagtcgatctgtttttatttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="113958" stop="112471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113658" g_stop="113479" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="303" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113108" g_stop="112772" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="639" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="656"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E376703" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113658" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</genome_strand>
        <mrna_strand>GAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCCCCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCCAACCGCAGTCGATCTGTTTTTA-TTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254867" ref_strand="-" ref_description="SGN-E254867 [cLEG-33-F20]">
      <seq>atcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattgcaggttnacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacgattaaatgaaatcgactatgtgaattatcagcaactcggggctaataatgaaaccccttgaataggtgcactagcagtgtattccaccggatatggcaaataagtgaagaaattattgttagctagttgtgtccctcccttttacctcaactgtcaaatctctgagaagcaaatggcttatcgagagagtagtagatatttgaatctatggacaaggatgagaaaatagtcgagtggtgttctttgtttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="113978" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="199" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="325" r_length="126" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113108" g_stop="112807" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="627" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E254867" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254867" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATT-CA-GTT-ACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGT</genome_strand>
        <mrna_strand>AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTA--GAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTGCAGGTTNACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251583" ref_strand="-" ref_description="SGN-E251583 [cLEG-9-N17]">
      <seq>aaaagtgaaggcttttccaatggatggtactgttccgtttagaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacgattaaatgaaatcgactatgtgaattatcagcaactcggggctaataatgaaaccccttgaataggtgcactagcagtgtattccaccggatatggcaaataagtgaagaaattattgttagctagttgtgtccctcccttttacctcaactgtcaaatctctgagaagcaaatggcttatcgagagagtagtagatatttgaatctatgcacaaggatgagaaaatagtcgagtggtgttctttgtttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="113950" stop="112510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113650" g_stop="113479" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="293" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113108" g_stop="112807" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="595" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E251583" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113650" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGT</genome_strand>
        <mrna_strand>AAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTA--GAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGCACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411144" ref_strand="-" ref_description="SGN-E411144 [STM-14-M19]">
      <seq>tgtagtgaatattcaggtaccattatatcctactgcaatttttcagggtgaaactgatggtaaaggaatgagttttgtcttgtactttaagctttccaaaagttatgcgaaggaacttccttctcattttcaagagaacataagaagggtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttgaagatattaggtcgtgtagcaaatgtggaggacctccgtttaagtgcagcagagaggaagcttatgcaggcgtacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatatagatatgcacagattcagttacatctctaggaagggttgcgaaacattcctagataggctaaagctatgctccttggatgtaggcctcacaattcagggtaacaaaattgaagaattgccggagcagatcttatgttgtatacggttaaatgaaatcgactatgtgaattatcagcaactcggggttaataatgaaaccccttgaataagtgcacaaacagtgtaatccacaggatatggcaaataagtgatgaagttattgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114447" stop="112641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114139" g_stop="114011" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="145" r_length="129" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="340" r_length="195" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113307" g_stop="113185" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="463" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113108" g_stop="112941" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="631" r_length="168" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="641"/>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E411144" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411144" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114139" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113185"/>
          <exon e_start="113108" e_stop="112941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAGGTGAGTATCTGTATGTGACCTCAAATTCTCTTCTTTCCAAATTCAGCTGCAAGTAATTATTCACTTTTCAAATCAGGGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTA</genome_strand>
        <mrna_strand>GTACCATTATATCCTACTGCAATTTTTCAGGGTGAAACTGATGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCAAAAGTTATGCGAAGGAACTTCCTTCTCATTTTCAAGAGAACATAAGA.................................................................................................................................................................................................................................................................................................................................................AGGGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTGAAGATATTAGGTCGTGTAGCAAATGTGGAGGACCTCCGTTTAAGTGCAGCAGAGAGGAAGCTTATGCAGGCGTACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATAGATATGCACAGATTCAGTTACATCTCTAGGAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG............................................................................GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGGTTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGTTAATAATGAAACCCCTTGAATAAGTGCACAAACAGTGTAATCCACAGGATATGGCAAATAAGTGATGAAGTTATTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256168" ref_strand="+" ref_description="SGN-E256168 [cLEG-37-M11]">
      <seq>aagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgacgtatttttatctcaaagaaaaattgatcacattgctcaacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaacattcaggtgccattatatactgccatagtggacaagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaacattcctagataggctaaagctatgctccttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114916" stop="112903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114616" g_stop="114461" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114139" g_stop="114011" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="285" r_length="129" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="480" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113307" g_stop="113203" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="585" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E256168" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114616" e_stop="114461"/>
          <exon e_start="114139" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGAT</genome_strand>
        <mrna_strand>AAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG.................................................................................................................................................................................................................................................................................................................................GTGCCATTATATACTGCCATAGTGGACAAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376704" ref_strand="+" ref_description="SGN-E376704 [TUS-19-E14]">
      <seq>tggtctgatggttaatttaaagatagtaatatttatgcttaagatacacatgaaatgtgtttcgagtctcttcaaagtcaaagttattcaacacccgaatggtttgtgaactgagactttattcgcctccatgtaagtttccaatctagctggctgtataacctctattaataacaatattcacgcatttgagttgctaagatactgttttcgcccgtctttttctctcttttttacaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttacatctctagaaagggttgcgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114678" stop="112936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114378" g_stop="114011" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="563" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113307" g_stop="113236" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="635" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E376704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114378" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACA</genome_strand>
        <mrna_strand>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243456" ref_strand="+" ref_description="SGN-E243456 [cLED-34-M16]">
      <seq>ctttttctctcttttttacaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatgcacagattcagttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114460" stop="112959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114160" g_stop="114011" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="345" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113307" g_stop="113259" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="394" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E243456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114160" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACA</genome_strand>
        <mrna_strand>CTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233338" ref_strand="+" ref_description="SGN-E233338 [cLED-9-K5]">
      <seq>tccttttggcgttgacgtatttttatctcaaagaaaaattgatcacattgctcaacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaacattcaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataagggagaaaattattttgagattgatattgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114881" stop="112975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114581" g_stop="114461" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114139" g_stop="114011" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="250" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113673" g_stop="113479" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="445" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113307" g_stop="113275" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="478" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E233338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114581" e_stop="114461"/>
          <exon e_start="114139" e_stop="114011"/>
          <exon e_start="113673" e_stop="113479"/>
          <exon e_start="113307" e_stop="113275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCATATTGAAGGAAATATGTTCCAAGTTCTTATTACGTTGCTAATGATGTCTTTGTAGGGAGAAAATTATTTTGAGATTGATATTGATATG</genome_strand>
        <mrna_strand>TCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG.................................................................................................................................................................................................................................................................................................................................GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG...........................................................................................................................................................................GGAGAAAATTATTTTGAGATTGATATTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228515" ref_strand="+" ref_description="SGN-E228515 [cLED-3-F12]">
      <seq>acctctattaataacaatattcacgcatttgagttgctaagatactgttttcgcccgtctttttctctcttttttacaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagtgaaggcttttccaatggatggtactgttccgtttagggaaaggttaaagatattaggtcgtgtagcaaatatggaggaccttcggttaagtgcagcagagaggaagctgatgcaggcatacaatgaaaaacctgttctttcacgtcctcaacatgagttctataaggtattattgtcagatttgagctttatttggatgaacaactgaaattttatgtttgtgttggcattagtatgagtgccatcacatcttagaatagaatggtcgcatcgtcttactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114518" stop="113063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114218" g_stop="114011" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113673" g_stop="113363" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="519" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E228515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114218" e_stop="114011"/>
          <exon e_start="113673" e_stop="113363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCA</genome_strand>
        <mrna_strand>ACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272875" ref_strand="+" ref_description="SGN-E272875 [cLEM-25-D7]">
      <seq>agatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgcttcaaaggcccatagctggtagccaagtaccagtttgcccgttggagaataaattgcctgatagttggtcctatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgacgtatttttatctcaaagaaaaattgatcacattgctcaacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaacattcaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagctttccgaaagttatgcaaaagaacttccttcttattttcaggagaacatcagaagagtaatggatgatgaagtggaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="116958" stop="113345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116658" g_stop="116565" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="230" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="393" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114139" g_stop="114011" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="522" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113673" g_stop="113645" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="551" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E272875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116658" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114461"/>
          <exon e_start="114139" e_stop="114011"/>
          <exon e_start="113673" e_stop="113645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGAGTAAGTTCTAGACTTCTAGTTACCATGTCATTGGTCCTTGTTTTTCTTTTAACCTGTCTCTAGTTGAATATTTCCTGTTACTTCTTAATTGTTTAATCATGTTTCTTCATGTTCGTCTTTTTTATTGTGCCTCTTGTAATATTTGTTTCTCTGTTGGTGTTTTCTTTTTTCACATTCTGTTAGTTTCTGTGTACATTCTCTAGTAGTATTGTGTTGGGTGCTGATTGTTACGTAGTCATTATTTCATGGTTTATTTACCTCTTGTCTGTTTCTTTGTAAACTATCAGAGTCCGAATTTTTACTGAACAATCTTTTCCTACTCTATCCTATTGATCAGAGAGTAATGGATGATGAAGTGGAAAAAGT</genome_strand>
        <mrna_strand>AGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG.................................................................................................................................................................................................................................................................................................................................GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA.................................................................................................................................................................................................................................................................................................................................................AGAGTAATGGATGATGAAGTGGAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231167" ref_strand="+" ref_description="SGN-E231167 [cLED-5-C4]">
      <seq>tggtctgatggttaatttaaagatagtaatatttatgcttaagatacacatgaaatgtgtttcgagtctcttcaaagtcaaagttattcaacacccgaatggtttgtgaactgagactttattcgcctccatgtaagtttccaatctagctggctgtataacctctattaataacaatattcacgcatttgagttgctaagatactgttttcgcccgtctttttctctcttttttacaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaangctttccgaaagttatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="114678" stop="113746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114378" g_stop="114046" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E231167" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114378" e_stop="114046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAA-GCTTTCCGAAAGTTATGCAA</genome_strand>
        <mrna_strand>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAANGCTTTCCGAAAGTTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411143" ref_strand="+" ref_description="SGN-E411143 [STM-14-M19]">
      <seq>ttggagaactgtggaattctttcaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgcttcaaaggcccatagctggtagccaagtaccagtttgcccattggagaataaattgcctgacagttggtcccatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggtgttgatgtatttttatctcaaagaaaaattgatcatattgctcgacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaatattcaggtaccattatatcctactgcaatttttcagggtgaaactgatggtaaaggaatgagttttgtcttggactttaagctttccaaaagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117030" stop="113749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116730" g_stop="116565" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="301" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="464" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114139" g_stop="114049" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="555" r_length="91" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E411143" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116730" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114461"/>
          <exon e_start="114139" e_stop="114049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATG</genome_strand>
        <mrna_strand>TTGGAGAACTGTGGAATTCTTTC-AACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCATTGGAGAATAAATTGCCTGACAGTTGGTCCCATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGTGTTGATGTATTTTTATCTCAAAGAAAAATTGATCATATTGCTCGACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAATATTCAG.................................................................................................................................................................................................................................................................................................................................GTACCATTATATCCTACTGCAATTTTTCAGGGTGAAACTGATGGTAAAGGAATGAGTTTTGTCTTGGACTTTAAGCTTTCCAAAAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239500" ref_strand="+" ref_description="SGN-E239500 [cLED-23-F22]">
      <seq>tcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgcttcaaaggcccatagctggtagccaagtaccagtttgcccgttggagaataaattgcctgatagttggtcctatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgacgtatttttatctcaaagaaaaattgatcacattgctcaacttgtggaacttcctgtcattgaacactctgggacacttccacccattcttgtagtgaacattcaggtgccattatatcctaccgcaatttttcagggtgaaactgacggtaaaggaatgagttttgtcttgtactttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="116900" stop="113764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116600" g_stop="116565" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="172" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="335" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114139" g_stop="114064" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="411" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E239500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116600" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114461"/>
          <exon e_start="114139" e_stop="114064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAGGTACCGTTTAATTAGTGTAGCTTTAAGAGAATAAGTGTGTTTCTTTTCTTTTTTTTCTCCATTGCTCTGGCTGTCATTAAGTTGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGC</genome_strand>
        <mrna_strand>TCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG.................................................................................................................................................................................................................................................................................................................................GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467870" ref_strand="+" ref_description="SGN-E467870 [cSTB-1-P20]">
      <seq>ttggggaactgtggaattctttcaaacaactgtgtggcccgtgttacctccactgttgtgcctgctgagaacagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatgtaaaaccctgcttcaaaggcccatatctggttgccaagtaccacttcgcccattggagaataaattgcctgacagttggtcccatattgaaccaaataccttcagggtccggggaggaaactatctcatggacaaaaagaaagagtttgcggcaaataatgctgcatattatccctttggagatgatgtattggtatctcaaagaaaaatcgatcatattgctcgacttgtggaacttcctgtcattgaacactctgggacacttacacccattcttgtagtgaatattcacgtaccattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117030" stop="114150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116730" g_stop="116565" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="302" r_length="136" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="465" r_length="163" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E467870" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116730" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG</genome_strand>
        <mrna_strand>TTGGGGAACTGTGGAATTCTTTCAAACAACTGTGTGGCCCGTGTTACCTCCACTGTTGTGCCTGCTGAGAACAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATGTAAAACCCTGCTTCAAAGGCCCATATCTGGTTGCCAAGTACCACTTCGCCCATTGGAGAATAAATTGCCTGACAGTTGGTCCCATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATCTCAT.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCCTTTGGAGATGATGTATTGGTATCTCAAAGAAAAATCGATCATATTGCTCGACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTACACCCATTCTTGTAGTGAATATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454075" ref_strand="+" ref_description="SGN-E454075 [cSTS-22-G5]">
      <seq>gtgggcggactagtgtagcttctatcaaagatactaaccatggggatgttaatttaaaccttgatgtacctcacagtgaggtacggcctgttttccttgatgagatctcgtcctctgaaaatataggtagtggcagggaggatggtttgttggagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccgtgcttcaaaggcccatagctggtagccaagtaccagtttgcccgttggagaataaattgcctgatagttggtcccatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgatgtatttttatctcaaagaaaaattgatcatattgctcgacttgtggaacttnctgtcattgaacactctgggacactttcacccattcttgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117179" stop="114171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116879" g_stop="116565" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="451" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114471" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="604" r_length="153" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E454075" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116879" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGT</genome_strand>
        <mrna_strand>GTGGGCGGACTAGTGTAGCTTCTATCAAAGATACTAACCATGGGGATGTTAATTTAAACCTTGATGTACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCTGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTTGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCGTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCCATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGATGTATTTTTATCTCAAAGAAAAATTGATCATATTGCTCGACTTGTGGAACTTNCTGTCATTGAACACTCTGGGACACTTTCACCCATTCTTGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468119" ref_strand="+" ref_description="SGN-E468119 [cSTB-2-F19]">
      <seq>ttggagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatcctgtgccactctactttcatctnnaaaaccctgcttcaaagggcccatagctggtagccaagtaccagtttgcccattggagaataaattgcctgacagttggtcccatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggtgttgatgtattttatctcaaagaaaaattgatcatattgctcgacttgtggaacttcctgtcattgaacactctgggacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117030" stop="114190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116730" g_stop="116565" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="304" r_length="139" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114490" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="437" r_length="133" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E468119" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116730" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCT--AAAACCCTGCTTCAAA-GGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACAC</genome_strand>
        <mrna_strand>TTGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCC-TGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTNNAAAACCCTGCTTCAAAGGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCATTGGAGAATAAATTGCCTGACAGTTGGTCCCATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGTGTTGATGTA-TTTTATCTCAAAGAAAAATTGATCATATTGCTCGACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274281" ref_strand="+" ref_description="SGN-E274281 [cLEN-15-F12]">
      <seq>cacagtgatgtacggcctgttttccttgatgagatctcgtcctcggaaaatataggtagtggcacggaggatggtttgtcggagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgcttcaaaggcccatagctggtagccaagtaccagtttgcccgttggagaataaattgcctgatagttggtcctatattgaaccaaataccttcagggtccggggaggaaactatttcagggacaaaaagaaagagtttgcggcaaataatgctgcatattatccttttggcgttgacgtattttttatctcaaagaaaaatttgatcccattgctcaacttgtggaacttcctgtcattgaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117108" stop="114200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116808" g_stop="116565" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115022" g_stop="114887" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="380" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114623" g_stop="114500" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="506" r_length="126" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E274281" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116808" e_stop="116565"/>
          <exon e_start="115022" e_stop="114887"/>
          <exon e_start="114623" e_stop="114500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAGGTAATATACTTACAGATACACAAAACAAACAGGTAAGCACTTATTTTATGAGTGTGACAATCTAGTCTTAAAAAAATGGCTAAGATGAAATCCTTCATTTAGAAAAAGTAGAAAAGAAAGGGAAAATCCATATGCCCCATAGTTAAAGATGTGTTTTGTGGACGTTATGGTTATCCTAAGTTTGTGTAACCATGCTTTCTGCCAATGCAACTGCCCTCTACTTTTGTTTATGTTGTATCATTCACATATTGTATTTTCTGCAGGGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTA-TTTTTATCTCAAAGAAAAA-TTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACAC</genome_strand>
        <mrna_strand>CACAGTGATGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCACGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG.......................................................................................................................................................................................................................................................................GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTTATCTCAAAGAAAAATTTGATCCCATTGCTCAACTTGTGGAACTTCCTGTCATTGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710821" ref_strand="+" ref_description="SGN-E710821 [FA56DD12]">
      <seq>ggacggattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaagatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactagtgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttgatgagatctcgtcctcggaaaatataggtagtggcagggaggatggtttgtccgagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttgagaacagatctcttagctctagtcctccaagttcaaggaagaaagcggacctaaagcttcccttcaaatggaaagatggaaatccttgtgccactctactttcatctaaaaccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117385" stop="114704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117085" g_stop="117001" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116906" g_stop="116565" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="427" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115022" g_stop="115004" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="446" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E710821" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117085" e_stop="117001"/>
          <exon e_start="116906" e_stop="116565"/>
          <exon e_start="115022" e_stop="115004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTACGTGAGTATCTACATCTAAATTTTGATCTAGTTTCTTTGGCACAAAGTTCCTCAAATCTGCATTACATAATGGATTAAGTTTGAACATCATTGTTGGTTATTTTATGAATATTACTTCTAAAGTATCTTAAATTTGTTGCAATTAGTAATTAGCAATTTTTGCTATTGAAGACATTTATAAAGAGAAATTTCAAGAATTACACCACGTTATAACAGGATTTAGTTATTGTTAAGAGGAACATCTTTCAAGAAACAACAATTATTATTGTTCAAAGGAATATCTTGTCTCGAAATACATTTTAAGGAACTAGTGCTCTTATTGGATTATCCATGTCTCATTTTCTTTGAGGCAAAATTATGTGTTATCTGATGACTGTTTCAGCTGCTTTATATATTTGGAGTTGGTACTGTTGAATGGCTTGAATCGGATCCGTTACAACAGAAAGGACGGGGGTCTTAATTATCTGTCAATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCTTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTTTGTATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCATTTATATTTTCTCGTATTATCTCGAATTCCGCACAACAGGTACATTCGGACTAGCAAAAACAGCTCTCCTCAAATACAACTGAAAATGTAGTTGATTTGTACAGGGCAGTGATAAAACTAGTTACAGCTGAAACATATTTCCCAACTAATTGATATTGCTTATATAAATCTTTCGCTATGTGTGAATTCATTCCAAACAATTATAGGCCTTTTGAGGCCACTGTTTTCCATGTGATTTTAGGTGTACCTCGTCTCCTTTTTAAGCAAGTAACTCCCTTAATATAAGTGTAGGAGTGTGAAGGTGGGGTCAGTATAGAAGATAAAACAAAGGCATCCTTGTCAAGGTCCTTGATTCTCTGCTGCACCTTGGCGCGGAACGGATCTTAACAATCTACTTTTTAATAGAAAATTAGTCTAGCTGAGAAAGGAAAAGTAGTTCCAAAAGGAGACTTGACCTAGCAAATGCGATCTTCACCTCAATGCTATACTTCGGCAGCTACGGACTAAGACGCTTCAGAAGAAAAGCTACATCCACCACTTGGCGGATCTTTAATAATGCACTTCTAAGGGAAAATTTAGTCTAGCTGTTTCTCAAAATTCAGTTTTGACCTTTTAGACCTATTTTGTATATCAAGCTGTAAAATCAAGAGAGAAGGAAAAAGAAAAGAAGAGAGTGATTGTGATAGAGGAATTGAATCCTTGACATCATATGTCTGTCTCCGAGCCTGAAAACTGGCTGTTTGGCATCTTGTGTAAATGTTTAAACTTGAAATTTCTCTATAAATTTGTCTTTCGGATGGACTCAAGAGTGATGATTAATTTATCTGTGATCCAGTTACCAGATCAAGGAGAAGGAAATACAATTAGCTAACTTTTATTTGTTTTTGGGTACAGTTTCATCTAAAACCCTGCT</genome_strand>
        <mrna_strand>GGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCCGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAACAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCTAAAACCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266291" ref_strand="+" ref_description="SGN-E266291 [cLEI-3-P23]">
      <seq>tgatctaacttacttcataaaattgatgaggcgttggctttggataactataatccaacatttcagggacggattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaagatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactagtgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttgatgagatctcgtcctcggaaaatataggtagtggcagggaggatggtttgtcggagaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgtagtgcctgttgagaagagatctcttagctctagtcctccaagttcaaggaagaaagcggaccctaaagctttcctttaaatggaaagatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="118170" stop="116285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117872" g_stop="117806" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117084" g_stop="117001" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="151" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116906" g_stop="116585" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="474" r_length="323" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E266291" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117872" e_stop="117806"/>
          <exon e_start="117084" e_stop="117001"/>
          <exon e_start="116906" e_stop="116585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGGGTACTTTCTCTGTTTTTACTTTTTTTTTTTTGGGATTATTAGGTGTTGTGATCTAGAATTTTGTTGAATTGAATTTTGAGTTAATTTGGTTAAGTTGAAGGTTTTTGAGGTGGAGATATGGAGGTGTGGAGGTGATGAGATCCACTTAGGATGGAAAAGTTTCGATAAATTCGAGTTTTAGTAGCTCAGTTGGTTGGTTACCTGAACTTTCACCTGCGATTCCCCAACTTGTAATGTTTTGTGCCCATTTCACTTCCCATATCCCCAATTTAGGGGAAAAATTAGTGTTAGATATATGCTTTTGATTGAGTAAGTGAAATATAGATTTTCTGATGAACACTTTAAAATCAAATTTTGATGGTTGTGATAATATGCACTTGTATTGGGTTGTTTTGTATACAATTTAACTTAAATAGTAAAACTTTAGATGGTGTGTTGTTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGA-CCTAAAGCTTCCCTTCAAATGGAAAGATGG</genome_strand>
        <mrna_strand>TGATCTAACTTACTTCATAAAATTGATGAGGCGTTGGCTTTGGATAACTATAATCCAACATTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTAGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCCTAAAGCTTTCCTTTAAATGGAAAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719405" ref_strand="+" ref_description="SGN-E719405 [FC07DA11]">
      <seq>ttttcttcttctctgaaaatcatgtaacataacttcaaaaatatatcctctattttgtttttttgagataattaatggcttctccacctcttcaagcttcaaaattcctcaaaaatcaatagatttttctctctctaaaaaaaaatgatatagatttttttttgttgttgttgttgatatgatatagtagttgttgagaagcatatgattctgctgaaatgggagcatgtgtatcgcgtccagatagttgtgttggaggtaaattgaaaggttcaaataagtttaggaaaaaaagggggggaagaagaagaaggaagaaatctaactcacttcataaaattgatgaggcgtttcctttggataactataatccaacatttcagggacggattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaaaatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactagtgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttgatgagatctcgtcctcggaaaatataggtagtggcagggaggatggtttgtcggaaaactgtggaattctttcaaacaactgtctgccccgtcttacctccactgttgtgcctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="118489" stop="116364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118189" g_stop="117806" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117084" g_stop="117001" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="468" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116906" g_stop="116664" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="711" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E719405" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118189" e_stop="117806"/>
          <exon e_start="117084" e_stop="117001"/>
          <exon e_start="116906" e_stop="116664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTCTCTGAAAATCATGTAACATAATTCCAAGAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGGGTACTTTCTCTGTTTTTACTTTTTTTTTTTTGGGATTATTAGGTGTTGTGATCTAGAATTTTGTTGAATTGAATTTTGAGTTAATTTGGTTAAGTTGAAGGTTTTTGAGGTGGAGATATGGAGGTGTGGAGGTGATGAGATCCACTTAGGATGGAAAAGTTTCGATAAATTCGAGTTTTAGTAGCTCAGTTGGTTGGTTACCTGAACTTTCACCTGCGATTCCCCAACTTGTAATGTTTTGTGCCCATTTCACTTCCCATATCCCCAATTTAGGGGAAAAATTAGTGTTAGATATATGCTTTTGATTGAGTAAGTGAAATATAGATTTTCTGATGAACACTTTAAAATCAAATTTTGATGGTTGTGATAATATGCACTTGTATTGGGTTGTTTTGTATACAATTTAACTTAAATAGTAAAACTTTAGATGGTGTGTTGTTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTG</genome_strand>
        <mrna_strand>TTTTCTTCTTCTCTGAAAATCATGTAACATAACTTCAAAAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAAATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAAAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205672" ref_strand="+" ref_description="SGN-E205672 [cLEC-21-E23]">
      <seq>ttccgctgcatacaattagccttgatagtttctcatgttcttgtgatgtcgttatcttttcctaactcctgttaaatgccttcagcaagtggcaagttaaagtgagattatatgtatcgttgttcgttaggatataagtttgtttgcaacgttacatctattattcattggaaaggatctttgttagaactaaccctcatgttggtattcgaaaggtaaatagcacataaaatcatcagaaataacctttggaaatgtttaatgtttgtcatggaaatcgcaggaccgattgaggaggcatggtttgattctgctgcaatatttgaatctgattgcagtgatgaagatttccagagtgttcctgatgatgtactttctgtcaacagctttgattgtgggcggactactgtagcttcgatcaaagatactaacaatggggatgttaatttaaaccccgatggacctcacagtgaggtacggcctgttttccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="117667" stop="116480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117367" g_stop="117001" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116906" g_stop="116780" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="494" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E205672" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117367" e_stop="117001"/>
          <exon e_start="116906" e_stop="116780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATGGTACAGCGTTCTTAGTTTTCAATCTTCTGTTTCAACTGTTAGAATTTTGTTTCGTTTGAAGTTAGTAATACAAATATAAATACAATTACTGCAGATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGA</genome_strand>
        <mrna_strand>TTCCGCTGCATACAATTAGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTATCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTTGTTAGAACTAACCCTCATGTTGGTATTCGAAAGGTAAATAGCACATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACCGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG..............................................................................................ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTACTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332405" ref_strand="+" ref_description="SGN-E332405 [cTOD-17-C18]">
      <seq>tgtatcgcgtccagatagttgtgttggaggaaattgaaaggtcaaataagtttaggaaaaaaagggggggaagaagaagaaggaagaaatctaactcacttcataaaattgatgaggcgtttcctttggataactataatccaacatttcagggacggattgaggaggcatggtttgattctgctgcaatatttgatctgattgcagtgatgaaatttcagagtgtcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0098C07-pRCuc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0098C07.1" temp_strand="-" temp_description="C04SLm0098C07.1  CU280045.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0098C07 sequenced_by:sanger upload_account_name:uk">
        <position start="118260" stop="116701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117960" g_stop="117806" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117084" g_stop="117001" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="233" r_length="80" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0098C07.1" gen_strand="-" ref_id="SGN-E332405" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0098C07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117960" e_stop="117806"/>
          <exon e_start="117084" e_stop="117001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGGGTACTTTCTCTGTTTTTACTTTTTTTTTTTTGGGATTATTAGGTGTTGTGATCTAGAATTTTGTTGAATTGAATTTTGAGTTAATTTGGTTAAGTTGAAGGTTTTTGAGGTGGAGATATGGAGGTGTGGAGGTGATGAGATCCACTTAGGATGGAAAAGTTTCGATAAATTCGAGTTTTAGTAGCTCAGTTGGTTGGTTACCTGAACTTTCACCTGCGATTCCCCAACTTGTAATGTTTTGTGCCCATTTCACTTCCCATATCCCCAATTTAGGGGAAAAATTAGTGTTAGATATATGCTTTTGATTGAGTAAGTGAAATATAGATTTTCTGATGAACACTTTAAAATCAAATTTTGATGGTTGTGATAATATGCACTTGTATTGGGTTGTTTTGTATACAATTTAACTTAAATAGTAAAACTTTAGATGGTGTGTTGTTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG</genome_strand>
        <mrna_strand>TGTATCGCGTCCAGATAGTTGTGTTGGAGG-AAATTGAAAGG-TCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTG-ATCTGATTGCAGTGATGAA-ATTT-CAGAGTG-TCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>154</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9531" PGL_stop="12421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9531" e_stop="9721"/>
            <exon e_start="10608" e_stop="12329"/>
            <exon e_start="12416" e_stop="12421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.899" acc_prob="0.988" e_score="0.990"/>
          <exon-intron don_prob="0.693" acc_prob="0.099" e_score="0.995"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="9531" e_stop="9721" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.899" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9722" i_stop="10607" i_length="886"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="10608" e_stop="12329" e_length="1722"/>
          </exon>
          <intron i_serial="2" don_prob="0.693" acc_prob="0.099">
            <gDNA_intron_boundary i_start="12330" i_stop="12415" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.833">
            <gDNA_exon_boundary e_start="12416" e_stop="12421" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9531" stop="9721"/>
              <exon start="10608" stop="12315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9548" stop="9721"/>
              <exon start="10608" stop="11136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9548" stop="9721"/>
              <exon start="10608" stop="10971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9552" stop="9721"/>
              <exon start="10608" stop="10883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10806" stop="11476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10930" stop="11777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11683" stop="12123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11708" stop="12316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11861" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11979" stop="12329"/>
              <exon start="12416" stop="12421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGAAGAGAGATAAAAGGGGTCCTCTGAAAAATTATGCCCCAAAGCAGAAGCCAAAGTCTACTTTGATTGTACAAAGAATCCACAGAAACAAAAAAATCACACAAAAAAAAGGAAGAAAAAGAGAGCAAAATCACACACATACACACAGTTGAATTTTAAGTTGAAGATGTATACATAAATCTAATCAG : GTTGAACCTGGACGATATGTTGGAAGATCGATCTTGTTTGGTTCCTAGGGATTTCTCAAGAGAAAACAACAACTGGTCGGCCTGCATTAATTACAGCCTCGATATGATTGAAGTTCAGAATGGTAAAAGGCCATTGGAAAATAATCAGGAGGATGAAGTTGTGCAACGCAAGTTGCCAAAGCTATCTGATGCTCGTGATGGAAAAGAAGTCGTTCTAGCCTCACCACATGACCAAGCTGGTGATCAGCGTCATGATGAAGATACTAGTTCTCTTATTCCTTCCATTGGCCGAGACAACTCTGTTAGCTCTCTCATTCATTGCTCCAGGTCTGATTTTGGGGCTATTGCATCTTTAAATCGTAGCTTTCGCTCGTTAATTAGTAGTGGGGAGCTTTACAGACTGAGGCGTCAACAAGGCGTGGTTGAGCATTGGGTTTATTTTTCTTGCCATCTACGTCAATGGGAAGCTTTTGACCCCATTCGTCGCCGTTGGATGCATCTACCATCAATGAATTTCAATGAATGTTTTGTGTTCTCAGACAAGGAGTCTTTAGCAGTTGGGACAGAGCTGCTTGTGTTTGGAAAGGAGATATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCAGCTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCTGGGGAGATTGCCATTCTAGCTGGTGGTTGTGACTCACAGGGCAATATCCTCAGCTCAGCAGAACTTTACAATTCAGAGACTGGAACATGGAAGACCTTACCAAGCATGAACAAGCGGCGGAAGATGTGTTCTGCAGTATTTATGGACAAAAAGTTTTACGTAATTGGAGGCATTGGAGGTACGGAGTCATCAAACGCGCTACTGACTTGTGGAGAGGAATATGATTTGAAAACAGGAAAATGGACTGAAATTTCGAGCATGTCTCCTGTCCGAGCTAGGGGTGATATGCCTGCTACTTCTGAAGCACCTCCTTTGGTTGCGGTTGTGAATAATGATTTGTATGCTGCTGATTATGCTGACATGGAGGTGAGGAAGTATGACAAGAAAAACAAAACATGGGCTACTATAGGAAGATTGCCTGAAAGAGCAGCTTCAATGAATGGTTGGGGCTTGGCTTTTCGAGCTTGTGGTGATAGGCTAATTGTAATCGGAGGACCTAGAACCATGGGTGAAGGGCATATCGAAGTTAATTCATGGGTTCCTAGTGAAGGACCGCCTCAGTGGAACTTGCTTGGACGAAAGCGATCTGGTAGCTTTGTGTATAATTGTGCTGTCATGGGTTGCTGACATATGATTTTTGCAAGTAGATACAGAATTGGGAATTCTTGCCAATTGGTAACTTATCCCAACCTTTTCGTTTCTGAATCCTTCTGTTTTATCTTATCAGATTACCAAACTATACCCAATATTCAACAGAATTACGTTATTTAGAAGGTCGATCCTGAGTACGACTTATCTCATCTCCCATTTTCATTTGCATAAAACTCCAAAGGCGGCCGCAGAGGTAAAATATTAACTTGAAGATGGGAGCAATACAGTGATAGATTTTGGTTATGCTGTGATCCTTATTTTTCTTGACATTGTTGAGGAAGAAAAATAAGGTTTTGTAGTGATGTTCATTTGACATCTTGTTTTATGTACCAAATACATTTATTCTTGTTGACAACAGGCTACAAGTTGAGACAATATTG : AAACAA</gDNA_template>
            <first_frame> Y  G  R  E  I  K  G  V  L  *  K  I  M  P  Q  S  R  S  Q  S  L  L  *  L  Y  K  E  S  T  E  T  K  K  S  H  K  K  K  E  E  K  E  S  K  I  T  H  I  H  T  V  E  F  *  V  E  D  V  Y  I  N  L  I  R :   L  N  L  D  D  M  L  E  D  R  S  C  L  V  P  R  D  F  S  R  E  N  N  N  W  S  A  C  I  N  Y  S  L  D  M  I  E  V  Q  N  G  K  R  P  L  E  N  N  Q  E  D  E  V  V  Q  R  K  L  P  K  L  S  D  A  R  D  G  K  E  V  V  L  A  S  P  H  D  Q  A  G  D  Q  R  H  D  E  D  T  S  S  L  I  P  S  I  G  R  D  N  S  V  S  S  L  I  H  C  S  R  S  D  F  G  A  I  A  S  L  N  R  S  F  R  S  L  I  S  S  G  E  L  Y  R  L  R  R  Q  Q  G  V  V  E  H  W  V  Y  F  S  C  H  L  R  Q  W  E  A  F  D  P  I  R  R  R  W  M  H  L  P  S  M  N  F  N  E  C  F  V  F  S  D  K  E  S  L  A  V  G  T  E  L  L  V  F  G  K  E  I  L  S  H  V  I  Y  R  Y  S  L  L  T  N  S  W  S  A  G  T  E  M  N  A  P  R  C  L  F  G  S  A  S  S  G  E  I  A  I  L  A  G  G  C  D  S  Q  G  N  I  L  S  S  A  E  L  Y  N  S  E  T  G  T  W  K  T  L  P  S  M  N  K  R  R  K  M  C  S  A  V  F  M  D  K  K  F  Y  V  I  G  G  I  G  G  T  E  S  S  N  A  L  L  T  C  G  E  E  Y  D  L  K  T  G  K  W  T  E  I  S  S  M  S  P  V  R  A  R  G  D  M  P  A  T  S  E  A  P  P  L  V  A  V  V  N  N  D  L  Y  A  A  D  Y  A  D  M  E  V  R  K  Y  D  K  K  N  K  T  W  A  T  I  G  R  L  P  E  R  A  A  S  M  N  G  W  G  L  A  F  R  A  C  G  D  R  L  I  V  I  G  G  P  R  T  M  G  E  G  H  I  E  V  N  S  W  V  P  S  E  G  P  P  Q  W  N  L  L  G  R  K  R  S  G  S  F  V  Y  N  C  A  V  M  G  C  *  H  M  I  F  A  S  R  Y  R  I  G  N  S  C  Q  L  V  T  Y  P  N  L  F  V  S  E  S  F  C  F  I  L  S  D  Y  Q  T  I  P  N  I  Q  Q  N  Y  V  I  *  K  V  D  P  E  Y  D  L  S  H  L  P  F  S  F  A  *  N  S  K  G  G  R  R  G  K  I  L  T  *  R  W  E  Q  Y  S  D  R  F  W  L  C  C  D  P  Y  F  S  *  H  C  *  G  R  K  I  R  F  C  S  D  V  H  L  T  S  C  F  M  Y  Q  I  H  L  F  L  L  T  T  G  Y  K  L  R  Q  Y  * :   N   </first_frame>
            <second_frame>  M  E  E  R  *  K  G  S  S  E  K  L  C  P  K  A  E  A  K  V  Y  F  D  C  T  K  N  P  Q  K  Q  K  N  H  T  K  K  R  K  K  K  R  A  K  S  H  T  Y  T  Q  L  N  F  K  L  K  M  Y  T  *  I  *  S   : G  *  T  W  T  I  C  W  K  I  D  L  V  W  F  L  G  I  S  Q  E  K  T  T  T  G  R  P  A  L  I  T  A  S  I  *  L  K  F  R  M  V  K  G  H  W  K  I  I  R  R  M  K  L  C  N  A  S  C  Q  S  Y  L  M  L  V  M  E  K  K  S  F  *  P  H  H  M  T  K  L  V  I  S  V  M  M  K  I  L  V  L  L  F  L  P  L  A  E  T  T  L  L  A  L  S  F  I  A  P  G  L  I  L  G  L  L  H  L  *  I  V  A  F  A  R  *  L  V  V  G  S  F  T  D  *  G  V  N  K  A  W  L  S  I  G  F  I  F  L  A  I  Y  V  N  G  K  L  L  T  P  F  V  A  V  G  C  I  Y  H  Q  *  I  S  M  N  V  L  C  S  Q  T  R  S  L  *  Q  L  G  Q  S  C  L  C  L  E  R  R  Y  C  H  M  S  F  I  V  I  V  C  *  Q  T  V  G  Q  L  E  Q  K  *  T  H  Q  G  V  C  L  A  L  P  A  L  G  R  L  P  F  *  L  V  V  V  T  H  R  A  I  S  S  A  Q  Q  N  F  T  I  Q  R  L  E  H  G  R  P  Y  Q  A  *  T  S  G  G  R  C  V  L  Q  Y  L  W  T  K  S  F  T  *  L  E  A  L  E  V  R  S  H  Q  T  R  Y  *  L  V  E  R  N  M  I  *  K  Q  E  N  G  L  K  F  R  A  C  L  L  S  E  L  G  V  I  C  L  L  L  L  K  H  L  L  W  L  R  L  *  I  M  I  C  M  L  L  I  M  L  T  W  R  *  G  S  M  T  R  K  T  K  H  G  L  L  *  E  D  C  L  K  E  Q  L  Q  *  M  V  G  A  W  L  F  E  L  V  V  I  G  *  L  *  S  E  D  L  E  P  W  V  K  G  I  S  K  L  I  H  G  F  L  V  K  D  R  L  S  G  T  C  L  D  E  S  D  L  V  A  L  C  I  I  V  L  S  W  V  A  D  I  *  F  L  Q  V  D  T  E  L  G  I  L  A  N  W  *  L  I  P  T  F  S  F  L  N  P  S  V  L  S  Y  Q  I  T  K  L  Y  P  I  F  N  R  I  T  L  F  R  R  S  I  L  S  T  T  Y  L  I  S  H  F  H  L  H  K  T  P  K  A  A  A  E  V  K  Y  *  L  E  D  G  S  N  T  V  I  D  F  G  Y  A  V  I  L  I  F  L  D  I  V  E  E  E  K  *  G  F  V  V  M  F  I  *  H  L  V  L  C  T  K  Y  I  Y  S  C  *  Q  Q  A  T  S  *  D  N  I   : E  T  </second_frame>
            <third_frame>   W  K  R  D  K  R  G  P  L  K  N  Y  A  P  K  Q  K  P  K  S  T  L  I  V  Q  R  I  H  R  N  K  K  I  T  Q  K  K  G  R  K  R  E  Q  N  H  T  H  T  H  S  *  I  L  S  *  R  C  I  H  K  S  N  Q  :  V  E  P  G  R  Y  V  G  R  S  I  L  F  G  S  *  G  F  L  K  R  K  Q  Q  L  V  G  L  H  *  L  Q  P  R  Y  D  *  S  S  E  W  *  K  A  I  G  K  *  S  G  G  *  S  C  A  T  Q  V  A  K  A  I  *  C  S  *  W  K  R  S  R  S  S  L  T  T  *  P  S  W  *  S  A  S  *  *  R  Y  *  F  S  Y  S  F  H  W  P  R  Q  L  C  *  L  S  H  S  L  L  Q  V  *  F  W  G  Y  C  I  F  K  S  *  L  S  L  V  N  *  *  W  G  A  L  Q  T  E  A  S  T  R  R  G  *  A  L  G  L  F  F  L  P  S  T  S  M  G  S  F  *  P  H  S  S  P  L  D  A  S  T  I  N  E  F  Q  *  M  F  C  V  L  R  Q  G  V  F  S  S  W  D  R  A  A  C  V  W  K  G  D  I  V  T  C  H  L  S  L  *  F  A  D  K  Q  L  V  S  W  N  R  N  E  R  T  K  V  F  V  W  L  C  Q  L  W  G  D  C  H  S  S  W  W  L  *  L  T  G  Q  Y  P  Q  L  S  R  T  L  Q  F  R  D  W  N  M  E  D  L  T  K  H  E  Q  A  A  E  D  V  F  C  S  I  Y  G  Q  K  V  L  R  N  W  R  H  W  R  Y  G  V  I  K  R  A  T  D  L  W  R  G  I  *  F  E  N  R  K  M  D  *  N  F  E  H  V  S  C  P  S  *  G  *  Y  A  C  Y  F  *  S  T  S  F  G  C  G  C  E  *  *  F  V  C  C  *  L  C  *  H  G  G  E  E  V  *  Q  E  K  Q  N  M  G  Y  Y  R  K  I  A  *  K  S  S  F  N  E  W  L  G  L  G  F  S  S  L  W  *  *  A  N  C  N  R  R  T  *  N  H  G  *  R  A  Y  R  S  *  F  M  G  S  *  *  R  T  A  S  V  E  L  A  W  T  K  A  I  W  *  L  C  V  *  L  C  C  H  G  L  L  T  Y  D  F  C  K  *  I  Q  N  W  E  F  L  P  I  G  N  L  S  Q  P  F  R  F  *  I  L  L  F  Y  L  I  R  L  P  N  Y  T  Q  Y  S  T  E  L  R  Y  L  E  G  R  S  *  V  R  L  I  S  S  P  I  F  I  C  I  K  L  Q  R  R  P  Q  R  *  N  I  N  L  K  M  G  A  I  Q  *  *  I  L  V  M  L  *  S  L  F  F  L  T  L  L  R  K  K  N  K  V  L  *  *  C  S  F  D  I  L  F  Y  V  P  N  T  F  I  L  V  D  N  R  L  Q  V  E  T  I  L  :  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9693" stop="9721"/>
                    <exon start="10608" stop="11925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1344</number_coding_nucleotides>
                  <number_encoded_amino_acids>448</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEDVYINLIRLNLDDMLEDRSCLVPRDFSRENNNWSACINYSLDMIEVQNGKRPLENNQEDEVVQRKLPKLSDARDGKEVVLASPHDQAGDQRHDEDTSSLIPSIGRDNSVSSLIHCSRSDFGAIASLNRSFRSLISSGELYRLRRQQGVVEHWVYFSCHLRQWEAFDPIRRRWMHLPSMNFNECFVFSDKESLAVGTELLVFGKEILSHVIYRYSLLTNSWSAGTEMNAPRCLFGSASSGEIAILAGGCDSQGNILSSAELYNSETGTWKTLPSMNKRRKMCSAVFMDKKFYVIGGIGGTESSNALLTCGEEYDLKTGKWTEISSMSPVRARGDMPATSEAPPLVAVVNNDLYAADYADMEVRKYDKKNKTWATIGRLPERAASMNGWGLAFRACGDRLIVIGGPRTMGEGHIEVNSWVPSEGPPQWNLLGRKRSGSFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12350" PGL_stop="11789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12350" e_stop="11789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="12350" e_stop="11789" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12350" stop="11789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12329" stop="12116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGGCATTCTAAAGGCACCAATATTGTCTCAACTTGTAGCCTGTTGTCAACAAGAATAAATGTATTTGGTACATAAAACAAGATGTCAAATGAACATCACTACAAAACCTTATTTTTCTTCCTCAACAATGTCAAGAAAAATAAGGATCACAGCATAACCAAAATCTATCACTGTATTGCTCCCATCTTCAAGTTAATATTTTACCTCTGCGGCCGCCTTTGGAGTTTTATGCAAATGAAAATGGGAGATGAGATAAGTCGTACTCAGGATCGACCTTCTAAATAACGTAATTCTGTTGAATATTGGGTATAGTTTGGTAATCTGATAAGATAAAACAGAAGGATTCAGAAACGAAAAGGTTGGGATAAGTTACCAATTGGCAAGAATTCCCAATTCTGTATCTACTTGCAAAAATCATATGTCAGCAACCCATGACAGCACAATTATACACAAAGCTACCAGATCGCTTTCGTCCAAGCAAGTTCCACTGAGGCGGTCCTTCACTAGGAACCCATGAATTAACTTCGATATGCCCTTCACCCATGGTTCTAGGTCCTC</gDNA_template>
            <first_frame> R  K  A  F  *  R  H  Q  Y  C  L  N  L  *  P  V  V  N  K  N  K  C  I  W  Y  I  K  Q  D  V  K  *  T  S  L  Q  N  L  I  F  L  P  Q  Q  C  Q  E  K  *  G  S  Q  H  N  Q  N  L  S  L  Y  C  S  H  L  Q  V  N  I  L  P  L  R  P  P  L  E  F  Y  A  N  E  N  G  R  *  D  K  S  Y  S  G  S  T  F  *  I  T  *  F  C  *  I  L  G  I  V  W  *  S  D  K  I  K  Q  K  D  S  E  T  K  R  L  G  *  V  T  N  W  Q  E  F  P  I  L  Y  L  L  A  K  I  I  C  Q  Q  P  M  T  A  Q  L  Y  T  K  L  P  D  R  F  R  P  S  K  F  H  *  G  G  P  S  L  G  T  H  E  L  T  S  I  C  P  S  P  M  V  L  G  P  </first_frame>
            <second_frame>  E  R  H  S  K  G  T  N  I  V  S  T  C  S  L  L  S  T  R  I  N  V  F  G  T  *  N  K  M  S  N  E  H  H  Y  K  T  L  F  F  F  L  N  N  V  K  K  N  K  D  H  S  I  T  K  I  Y  H  C  I  A  P  I  F  K  L  I  F  Y  L  C  G  R  L  W  S  F  M  Q  M  K  M  G  D  E  I  S  R  T  Q  D  R  P  S  K  *  R  N  S  V  E  Y  W  V  *  F  G  N  L  I  R  *  N  R  R  I  Q  K  R  K  G  W  D  K  L  P  I  G  K  N  S  Q  F  C  I  Y  L  Q  K  S  Y  V  S  N  P  *  Q  H  N  Y  T  Q  S  Y  Q  I  A  F  V  Q  A  S  S  T  E  A  V  L  H  *  E  P  M  N  *  L  R  Y  A  L  H  P  W  F  *  V  L </second_frame>
            <third_frame>   K  G  I  L  K  A  P  I  L  S  Q  L  V  A  C  C  Q  Q  E  *  M  Y  L  V  H  K  T  R  C  Q  M  N  I  T  T  K  P  Y  F  S  S  S  T  M  S  R  K  I  R  I  T  A  *  P  K  S  I  T  V  L  L  P  S  S  S  *  Y  F  T  S  A  A  A  F  G  V  L  C  K  *  K  W  E  M  R  *  V  V  L  R  I  D  L  L  N  N  V  I  L  L  N  I  G  Y  S  L  V  I  *  *  D  K  T  E  G  F  R  N  E  K  V  G  I  S  Y  Q  L  A  R  I  P  N  S  V  S  T  C  K  N  H  M  S  A  T  H  D  S  T  I  I  H  K  A  T  R  S  L  S  S  K  Q  V  P  L  R  R  S  F  T  R  N  P  *  I  N  F  D  M  P  F  T  H  G  S  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12271" stop="12062"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKMSNEHHYKTLFFFLNNVKKNKDHSITKIYHCIAPIFKLIFYLCGRLWSFMQMKMGDEISRTQDRPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15477" PGL_stop="13037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15477" e_stop="15418"/>
            <exon e_start="14435" e_stop="14054"/>
            <exon e_start="13389" e_stop="13037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.375" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15477" e_stop="15418" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15417" i_stop="14436" i_length="982"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14435" e_stop="14054" e_length="382"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.375">
            <gDNA_intron_boundary i_start="14053" i_stop="13390" i_length="664"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13389" e_stop="13037" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15474" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15468" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15463" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15458" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15457" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279146" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15455" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15455" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15455" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15455" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15455" stop="15418"/>
              <exon start="14435" stop="14075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15454" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15452" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15452" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15452" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553774" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15450" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15449" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15448" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15447" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15446" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15443" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15443" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15442" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15441" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15440" stop="15418"/>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14435" stop="14054"/>
              <exon start="13389" stop="13311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14400" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14399" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14396" stop="14054"/>
              <exon start="13389" stop="13083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14393" stop="14054"/>
              <exon start="13389" stop="13207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14354" stop="14054"/>
              <exon start="13389" stop="13044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14354" stop="14054"/>
              <exon start="13389" stop="13044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14353" stop="14054"/>
              <exon start="13389" stop="13037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14353" stop="14054"/>
              <exon start="13389" stop="13114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14350" stop="14054"/>
              <exon start="13389" stop="13040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14336" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14327" stop="14054"/>
              <exon start="13389" stop="13207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14327" stop="14054"/>
              <exon start="13389" stop="13226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14314" stop="14054"/>
              <exon start="13389" stop="13078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14313" stop="14054"/>
              <exon start="13389" stop="13083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14302" stop="14054"/>
              <exon start="13389" stop="13060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14271" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14263" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14230" stop="14054"/>
              <exon start="13389" stop="13079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265336" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14220" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256426" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14191" stop="14054"/>
              <exon start="13389" stop="13222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14145" stop="14054"/>
              <exon start="13389" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14079" stop="14054"/>
              <exon start="13389" stop="13083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13378" stop="13054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13377" stop="13060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13339" stop="13044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="13104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCTCTGTACATTGAAGGAGACGAACAAACATGGTGCACGTCTCTTTTTATCGCAACT : ATGGGAAGACCTTTAAGAAGCCACGAAGGCCTTATGAGAAGGAGCGATTGGATGCAGAATTGAAGCTTGTAGGAGAGTATGGACTAAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCGTATCAGGAATGCTGCTAGAATGCTTCTGACATTGGATGAGAAGGATCCACGTCGTATTTTTGAAGGTGAAGCTCTCTTGAGGAGGATGAACAGGTATGGGTTGTTGGATGAGAGCCAAAACAAGCTCGATTATGTCTTGGCACTCACCGTGGAGAACTTTCTTGAGCGTCGTCTCCAAACACTAGTGTTCAAGACCGGCATGGCTAAGTCAATTCATCATGCCAGAGTGCTCATCAGGCAAAGGCATATCAG : AGTTGGTAGGCAGGTGGTGAATGTTGCTTCTTTTATGGTGAGAGTAGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCATTTGGCGGTGGGCGTCCTGGAAGAGTGAAGCGAAAGAACCAAAAGTCTGCTGCCAAGAAGGCTGCTGGTGGTGATGGTGATGAAGAGGATGAAGAATGATCAACTATCTTAGTGTTTGGTCTATTTGGCTTGTAGTTCTGACCTATCTTTTTTTTCTGCTATTTGTGGTTTACCTTCATGTAGTAGTAAAGAAATATTAAACAGAAGTTTCTAAATCTTGGATTTTGCACTGTTTTAAGAGTTTTGACTAAATCTGTCTTACCATGTG</gDNA_template>
            <first_frame> R  S  L  Y  I  E  G  D  E  Q  T  W  C  T  S  L  F  I  A  T  :  M  G  R  P  L  R  S  H  E  G  L  M  R  R  S  D  W  M  Q  N  *  S  L  *  E  S  M  D  *  G  A  R  G  S  F  G  E  F  S  M  L  *  A  V  S  G  M  L  L  E  C  F  *  H  W  M  R  R  I  H  V  V  F  L  K  V  K  L  S  *  G  G  *  T  G  M  G  C  W  M  R  A  K  T  S  S  I  M  S  W  H  S  P  W  R  T  F  L  S  V  V  S  K  H  *  C  S  R  P  A  W  L  S  Q  F  I  M  P  E  C  S  S  G  K  G  I  S   : E  L  V  G  R  W  *  M  L  L  L  L  W  *  E  *  T  P  R  S  T  L  T  S  L  S  L  V  H  L  A  V  G  V  L  E  E  *  S  E  R  T  K  S  L  L  P  R  R  L  L  V  V  M  V  M  K  R  M  K  N  D  Q  L  S  *  C  L  V  Y  L  A  C  S  S  D  L  S  F  F  S  A  I  C  G  L  P  S  C  S  S  K  E  I  L  N  R  S  F  *  I  L  D  F  A  L  F  *  E  F  *  L  N  L  S  Y  H  V </first_frame>
            <second_frame>  D  L  C  T  L  K  E  T  N  K  H  G  A  R  L  F  L  S  Q  L :   W  E  D  L  *  E  A  T  K  A  L  *  E  G  A  I  G  C  R  I  E  A  C  R  R  V  W  T  K  V  Q  E  G  A  L  E  S  S  V  C  F  E  P  Y  Q  E  C  C  *  N  A  S  D  I  G  *  E  G  S  T  S  Y  F  *  R  *  S  S  L  E  E  D  E  Q  V  W  V  V  G  *  E  P  K  Q  A  R  L  C  L  G  T  H  R  G  E  L  S  *  A  S  S  P  N  T  S  V  Q  D  R  H  G  *  V  N  S  S  C  Q  S  A  H  Q  A  K  A  Y  Q  :  S  W  *  A  G  G  E  C  C  F  F  Y  G  E  S  R  L  P  E  A  H  *  L  L  S  H  *  S  I  W  R  W  A  S  W  K  S  E  A  K  E  P  K  V  C  C  Q  E  G  C  W  W  *  W  *  *  R  G  *  R  M  I  N  Y  L  S  V  W  S  I  W  L  V  V  L  T  Y  L  F  F  L  L  F  V  V  Y  L  H  V  V  V  K  K  Y  *  T  E  V  S  K  S  W  I  L  H  C  F  K  S  F  D  *  I  C  L  T  M   </second_frame>
            <third_frame>   I  S  V  H  *  R  R  R  T  N  M  V  H  V  S  F  Y  R  N   : Y  G  K  T  F  K  K  P  R  R  P  Y  E  K  E  R  L  D  A  E  L  K  L  V  G  E  Y  G  L  R  C  K  R  E  L  W  R  V  Q  Y  A  L  S  R  I  R  N  A  A  R  M  L  L  T  L  D  E  K  D  P  R  R  I  F  E  G  E  A  L  L  R  R  M  N  R  Y  G  L  L  D  E  S  Q  N  K  L  D  Y  V  L  A  L  T  V  E  N  F  L  E  R  R  L  Q  T  L  V  F  K  T  G  M  A  K  S  I  H  H  A  R  V  L  I  R  Q  R  H  I  R :   V  G  R  Q  V  V  N  V  A  S  F  M  V  R  V  D  S  Q  K  H  I  D  F  S  L  T  S  P  F  G  G  G  R  P  G  R  V  K  R  K  N  Q  K  S  A  A  K  K  A  A  G  G  D  G  D  E  E  D  E  E  *  S  T  I  L  V  F  G  L  F  G  L  *  F  *  P  I  F  F  F  C  Y  L  W  F  T  F  M  *  *  *  R  N  I  K  Q  K  F  L  N  L  G  F  C  T  V  L  R  V  L  T  K  S  V  L  P  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15460" stop="15418"/>
                    <exon start="14435" stop="14054"/>
                    <exon start="13389" stop="13206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRTNMVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARMLLTLDEKDPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVASFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKSAAKKAAGGDGDEEDEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18252" PGL_stop="18840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18252" e_stop="18840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="18252" e_stop="18840" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18252" stop="18840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302479" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGTACCACAACGATATTGCCCCTTCCGGCACCGCCGTTGGATGGGAATCTGGGACCAACACCTCCTGCTCAGGTGGTAGAGGAACCAGAGGATGATAGGATGGAAGAGAATGAAGAGGACAACAATAAAGGCAACAAGGTTCCAACATCTGTTGCTACACATACTAGAACTATTGGTATCATTTACCCTCCTCCAGATATTAGGAGTATTGTTGATAAGACTTCGCAGTTTGTTGCGAAGAATGGTCCGGAATTTGAGAAGAGAATTGTTCTAAATAATGCTGGCAATGCGAAATTTAACTTCTTGAATGCCTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGATGCTCGCGCACAGAATCAGGCTTCTGGAGAGCAGCCTACTCAGCCAGATGACAATGAAGCAGCCCCTGCTCCTCCTACTGCTGATGGTGCTGAGGCAACTGCTAAACCTGATCCGTCAGCTCAGTTTAGACCTGTAAGAAAGGTTCTCGAGCCACCTGAGGCAGAGCAATATACTGTAAGACTCCCTGAAGGGATCACAGGTGAAGAACTGGATATTATTAAGCTAACAGCAC</gDNA_template>
            <first_frame> F  G  T  T  T  I  L  P  L  P  A  P  P  L  D  G  N  L  G  P  T  P  P  A  Q  V  V  E  E  P  E  D  D  R  M  E  E  N  E  E  D  N  N  K  G  N  K  V  P  T  S  V  A  T  H  T  R  T  I  G  I  I  Y  P  P  P  D  I  R  S  I  V  D  K  T  S  Q  F  V  A  K  N  G  P  E  F  E  K  R  I  V  L  N  N  A  G  N  A  K  F  N  F  L  N  A  S  D  P  Y  H  A  Y  Y  Q  H  R  L  A  D  A  R  A  Q  N  Q  A  S  G  E  Q  P  T  Q  P  D  D  N  E  A  A  P  A  P  P  T  A  D  G  A  E  A  T  A  K  P  D  P  S  A  Q  F  R  P  V  R  K  V  L  E  P  P  E  A  E  Q  Y  T  V  R  L  P  E  G  I  T  G  E  E  L  D  I  I  K  L  T  A  </first_frame>
            <second_frame>  L  V  P  Q  R  Y  C  P  F  R  H  R  R  W  M  G  I  W  D  Q  H  L  L  L  R  W  *  R  N  Q  R  M  I  G  W  K  R  M  K  R  T  T  I  K  A  T  R  F  Q  H  L  L  L  H  I  L  E  L  L  V  S  F  T  L  L  Q  I  L  G  V  L  L  I  R  L  R  S  L  L  R  R  M  V  R  N  L  R  R  E  L  F  *  I  M  L  A  M  R  N  L  T  S  *  M  P  L  I  L  T  M  P  I  I  S  T  V  W  L  M  L  A  H  R  I  R  L  L  E  S  S  L  L  S  Q  M  T  M  K  Q  P  L  L  L  L  L  L  M  V  L  R  Q  L  L  N  L  I  R  Q  L  S  L  D  L  *  E  R  F  S  S  H  L  R  Q  S  N  I  L  *  D  S  L  K  G  S  Q  V  K  N  W  I  L  L  S  *  Q  H </second_frame>
            <third_frame>   W  Y  H  N  D  I  A  P  S  G  T  A  V  G  W  E  S  G  T  N  T  S  C  S  G  G  R  G  T  R  G  *  *  D  G  R  E  *  R  G  Q  Q  *  R  Q  Q  G  S  N  I  C  C  Y  T  Y  *  N  Y  W  Y  H  L  P  S  S  R  Y  *  E  Y  C  *  *  D  F  A  V  C  C  E  E  W  S  G  I  *  E  E  N  C  S  K  *  C  W  Q  C  E  I  *  L  L  E  C  L  *  S  L  P  C  L  L  S  A  P  F  G  *  C  S  R  T  E  S  G  F  W  R  A  A  Y  S  A  R  *  Q  *  S  S  P  C  S  S  Y  C  *  W  C  *  G  N  C  *  T  *  S  V  S  S  V  *  T  C  K  K  G  S  R  A  T  *  G  R  A  I  Y  C  K  T  P  *  R  D  H  R  *  R  T  G  Y  Y  *  A  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18252" stop="18839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTTTILPLPAPPLDGNLGPTPPAQVVEEPEDDRMEENEEDNNKGNKVPTSVATHTRTIGIIYPPPDIRSIVDKTSQFVAKNGPEFEKRIVLNNAGNAKFNFLNASDPYHAYYQHRLADARAQNQASGEQPTQPDDNEAAPAPPTADGAEATAKPDPSAQFRPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19119" PGL_stop="23440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19119" e_stop="19929"/>
            <exon e_start="19980" e_stop="20390"/>
            <exon e_start="20523" e_stop="21351"/>
            <exon e_start="21438" e_stop="21599"/>
            <exon e_start="21694" e_stop="21908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.278" acc_prob="0.228" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="19119" e_stop="19929" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="19980" e_stop="20390" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20523" e_stop="21351" e_length="829"/>
          </exon>
          <intron i_serial="3" don_prob="0.278" acc_prob="0.228">
            <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21438" e_stop="21599" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.875">
            <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="21694" e_stop="21908" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19119" stop="19785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19455" stop="19856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19456" stop="19865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20390"/>
              <exon start="20523" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20095" stop="20390"/>
              <exon start="20523" stop="20752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20847" stop="21351"/>
              <exon start="21438" stop="21599"/>
              <exon start="21694" stop="21908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20847" stop="21351"/>
              <exon start="21438" stop="21599"/>
              <exon start="21694" stop="21905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCCGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTAGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGATATCAAGAGTGCTGAAACCATGACAATTTCAGAGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC : TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG : GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG : ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG : GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTACTTATTCC</gDNA_template>
            <first_frame> E  Q  E  R  V  Q  M  A  M  I  D  W  H  D  F  V  V  V  E  T  I  D  F  A  D  D  E  D  Q  D  L  P  P  P  M  T  L  E  E  V  I  R  R  S  K  M  P  T  L  E  E  E  E  Y  V  E  P  G  K  E  V  E  M  E  M  D  E  E  E  V  Q  L  V  E  E  G  M  R  A  A  T  L  E  E  N  G  D  I  K  S  A  E  T  M  T  I  S  E  E  Q  D  P  P  M  R  I  V  K  N  W  K  R  P  E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  N  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L  P   : L  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A  R  A  K  E  A  K  A  *  R  V  Y  S  H  S  *  R  P  V  F  G  S  A  L   : G  T  C  K  D  Q  Y  I  C  A  E  Y  R  *  R  E  S  Q  R  T  N  S  G  N  Y  S  A  I  S  V  R  N  H  C  Q  S  K  R  E  D  F  W  G  D  S  A  A  C  K  Q  T  E  T  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  V  L  *  C  C  I  W  R  N  T  W  S  L  T  K  R  T  W  W  E  K  E  M  N  G  E  L  F  G  M  V  F  K  G  L  F  C  Y  C  S  A  Y  L  I  L  V  M  S  F  K  N  S  L  Y  F  F  H  V  I  W  E  I  I  L  V  L  Y  F  S  F  S  F  C  I  *  S  S  L  F  F  K  L  M  A  E  Y  L  L  Q  I  L  A  C  W  *  S  S  M  R  T  T  G  S  L  L  V  L  C  L  *  R  C  H  D  C  G  F  T  H  F  C  L  C  Y  *  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q  A  T  L  E  L  F  *  C  L  L  G  K  H  F  L  *  F  W  R  F  P  L  A  I  N  I  S  N  S  S  V  D  F  R  T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L  * :   F  I  L  L  V  C  F  D  G  V  C  C  I  P  V  A  P  L  M  C  L  Y  F  I  N  T  A  L  Y  P  C  *  E  M  *  C  V  L  H  L  L  V  V  L  R  G  P  I  S  T  T  K  S  R :   L  S  K  D  V  A  D  D  *  Y  V  F  L  M  *  *  L  E  I  P  Y  F  L  A  D  N  V  P  S  *  Y  S  S  A  M  I  L  I  S  Y  W  L  I  S  L  Y  M  F  M  L  L  C  M  I  L  A  L  V  T  Y  T  *  H  I  H  Q  K  H  Y  L  F  </first_frame>
            <second_frame>  N  K  R  G  C  R  W  L  *  L  I  G  M  I  L  L  L  L  R  L  *  I  L  P  M  T  R  I  R  I  Y  L  H  L  *  P  *  R  R  L  *  G  G  A  R  C  L  H  W  R  K  K  S  M  L  S  L  E  K  R  W  K  W  R  W  M  K  K  R  C  S  *  L  K  K  V  C  E  L  R  L  L  K  R  M  V  I  S  R  V  L  K  P  *  Q  F  Q  R  N  R  T  H  Q  C  G  L  *  R  T  G  R  G  L  K  R  G  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  P  V  S  S  Y  L  L  M  R  C  L  N  I  *  G  S  L  S  L  I  Q  S  T  R  N  R  R  T  G  C  L  R  R  L  R  R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H  Y  L  :  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  E  E  S  I  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  I  S  V  P  N  T  D  E  G  N  L  K  G  Q  I  L  E  I  T  V  Q  S  L  S  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  G  S  Y  L  A  W  S  S  K  V  Y  F  A  T  V  R  H  I  *  S  L  L  *  V  L  R  I  L  Y  T  S  F  M  L  F  G  R  L  Y  W  S  C  T  L  V  F  L  S  A  F  N  H  L  Y  F  S  S  *  W  L  S  I  Y  Y  R  F  W  H  V  G  D  H  P  *  G  Q  Q  E  V  Y  *  F  Y  V  Y  K  D  A  M  T  V  G  S  H  I  F  V  Y  V  T  N  F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  P  P  *  N  F  S  D  V  F  L  A  N  I  S  Y  N  F  G  G  F  P  *  Q  L  T  S  Q  I  L  L  W  T  L  G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C   : D  S  F  F  W  F  V  L  M  E  S  A  V  S  P  W  L  L  *  C  A  F  I  L  S  T  Q  L  Y  T  P  V  R  R  C  D  V  F  C  I  C  W  L  C  C  E  V  Q  S  R  Q  Q  K  A   : G  F  R  R  M  L  Q  T  I  D  T  S  F  L  C  N  S  W  K  F  L  I  F  W  Q  I  M  C  H  R  S  I  L  L  L  *  F  L  *  V  I  G  *  S  V  Y  I  C  L  C  F  C  A  *  Y  *  L  *  *  H  I  H  N  I  F  I  K  N  I  T  Y  S </second_frame>
            <third_frame>   T  R  E  G  A  D  G  Y  D  *  L  A  *  F  C  C  C  *  D  Y  R  F  C  R  *  R  G  S  G  F  T  S  T  Y  D  P  R  G  G  Y  K  E  E  Q  D  A  Y  I  G  G  R  R  V  C  *  A  W  K  R  G  G  N  G  D  G  *  R  R  G  A  A  S  *  R  R  Y  A  S  C  D  S  *  R  E  W  *  Y  Q  E  C  *  N  H  D  N  F  R  G  T  G  P  T  N  A  D  C  E  E  L  E  E  A  *  R  E  D  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  R  *  A  H  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  K  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  T  S :   I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q  S  Q  R  G  K  S  L  K  S  L  F  S  F  L  K  T  S  F  W  L  S  T  R :   D  L  Q  G  S  I  Y  L  C  R  I  P  M  K  G  I  S  K  D  K  F  W  K  L  Q  C  N  L  C  P  K  P  L  P  V  *  K  R  R  F  L  G  R  F  S  C  L  Q  T  N  R  N  *  V  E  R  L  V  F  S  R  T  T  C  L  L  R  T  I  M  L  H  L  E  K  H  L  V  S  H  *  E  N  V  V  G  E  R  D  E  W  G  V  I  W  H  G  L  Q  R  F  I  L  L  L  F  G  I  S  N  P  C  Y  E  F  *  E  F  S  I  L  L  S  C  Y  L  G  D  Y  T  G  L  V  L  *  F  F  F  L  H  L  I  I  F  I  F  Q  A  D  G  *  V  S  T  T  D  F  G  M  L  V  I  I  H  E  D  N  R  K  F  T  S  S  M  S  I  K  M  P  *  L  W  V  H  T  F  L  F  M  L  L  I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  S  H  L  R  T  F  L  M  S  S  W  Q  T  F  L  I  I  L  E  V  S  L  S  N  *  H  L  K  F  F  C  G  L  *  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V  :  I  H  S  F  G  L  F  *  W  S  L  L  Y  P  R  G  S  S  D  V  P  L  F  Y  Q  H  S  F  I  P  L  L  G  D  V  M  C  S  A  F  V  G  C  V  A  R  S  N  L  D  N  K  K  Q  :  A  F  E  G  C  C  R  R  L  I  R  L  S  Y  V  I  V  G  N  S  L  F  S  G  R  *  C  A  I  V  V  F  F  C  Y  D  S  Y  K  L  L  V  D  Q  F  I  Y  V  Y  A  F  V  H  D  I  S  S  S  D  I  Y  I  T  Y  S  S  K  T  L  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19555" stop="19929"/>
                    <exon start="19980" stop="20390"/>
                    <exon start="20523" stop="20792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLSLIQSTRNRRTGCLRRLRRRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHYLYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLEESILIPEDQFLAQHSGPARINISVPNTDEGNLKGQILEITVQSLSETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21462" stop="21599"/>
                    <exon start="21694" stop="21771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLLYPRGSSDVPLFYQHSFIPLLGDVMCSAFVGCVARSNLDNKKQAFEGCCRRLIRLSYVIVGNSLFSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19119" e_stop="19929"/>
            <exon e_start="19980" e_stop="20390"/>
            <exon e_start="20523" e_stop="21351"/>
            <exon e_start="21518" e_stop="21599"/>
            <exon e_start="21694" e_stop="21901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.278" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="19119" e_stop="19929" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="19980" e_stop="20390" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="20523" e_stop="21351" e_length="829"/>
          </exon>
          <intron i_serial="3" don_prob="0.278" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21352" i_stop="21517" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21518" e_stop="21599" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.875">
            <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="21694" e_stop="21901" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19119" stop="19785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19455" stop="19856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19456" stop="19865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20390"/>
              <exon start="20523" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20095" stop="20390"/>
              <exon start="20523" stop="20752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21097" stop="21351"/>
              <exon start="21518" stop="21599"/>
              <exon start="21694" stop="21901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCCGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTAGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGATATCAAGAGTGCTGAAACCATGACAATTTCAGAGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC : TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG : GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG : CTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG : GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAACATTAC</gDNA_template>
            <first_frame> E  Q  E  R  V  Q  M  A  M  I  D  W  H  D  F  V  V  V  E  T  I  D  F  A  D  D  E  D  Q  D  L  P  P  P  M  T  L  E  E  V  I  R  R  S  K  M  P  T  L  E  E  E  E  Y  V  E  P  G  K  E  V  E  M  E  M  D  E  E  E  V  Q  L  V  E  E  G  M  R  A  A  T  L  E  E  N  G  D  I  K  S  A  E  T  M  T  I  S  E  E  Q  D  P  P  M  R  I  V  K  N  W  K  R  P  E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  N  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L  P   : L  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A  R  A  K  E  A  K  A  *  R  V  Y  S  H  S  *  R  P  V  F  G  S  A  L   : G  T  C  K  D  Q  Y  I  C  A  E  Y  R  *  R  E  S  Q  R  T  N  S  G  N  Y  S  A  I  S  V  R  N  H  C  Q  S  K  R  E  D  F  W  G  D  S  A  A  C  K  Q  T  E  T  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  V  L  *  C  C  I  W  R  N  T  W  S  L  T  K  R  T  W  W  E  K  E  M  N  G  E  L  F  G  M  V  F  K  G  L  F  C  Y  C  S  A  Y  L  I  L  V  M  S  F  K  N  S  L  Y  F  F  H  V  I  W  E  I  I  L  V  L  Y  F  S  F  S  F  C  I  *  S  S  L  F  F  K  L  M  A  E  Y  L  L  Q  I  L  A  C  W  *  S  S  M  R  T  T  G  S  L  L  V  L  C  L  *  R  C  H  D  C  G  F  T  H  F  C  L  C  Y  *  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q  A  T  L  E  L  F  *  C  L  L  G  K  H  F  L  *  F  W  R  F  P  L  A  I  N  I  S  N  S  S  V  D  F  R  T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L  C :   F  I  P  L  L  G  D  V  M  C  S  A  F  V  G  C  V  A  R  S  N  L  D  N  K  K  Q  :  A  F  E  G  C  C  R  R  L  I  R  L  S  Y  V  I  V  G  N  S  L  F  S  G  R  *  C  A  I  V  V  F  F  C  Y  D  S  Y  K  L  L  V  D  Q  F  I  Y  V  Y  A  F  V  H  D  I  S  S  S  D  I  Y  I  T  Y  S  S  K  T  L  </first_frame>
            <second_frame>  N  K  R  G  C  R  W  L  *  L  I  G  M  I  L  L  L  L  R  L  *  I  L  P  M  T  R  I  R  I  Y  L  H  L  *  P  *  R  R  L  *  G  G  A  R  C  L  H  W  R  K  K  S  M  L  S  L  E  K  R  W  K  W  R  W  M  K  K  R  C  S  *  L  K  K  V  C  E  L  R  L  L  K  R  M  V  I  S  R  V  L  K  P  *  Q  F  Q  R  N  R  T  H  Q  C  G  L  *  R  T  G  R  G  L  K  R  G  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  P  V  S  S  Y  L  L  M  R  C  L  N  I  *  G  S  L  S  L  I  Q  S  T  R  N  R  R  T  G  C  L  R  R  L  R  R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H  Y  L  :  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  E  E  S  I  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  I  S  V  P  N  T  D  E  G  N  L  K  G  Q  I  L  E  I  T  V  Q  S  L  S  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  G  S  Y  L  A  W  S  S  K  V  Y  F  A  T  V  R  H  I  *  S  L  L  *  V  L  R  I  L  Y  T  S  F  M  L  F  G  R  L  Y  W  S  C  T  L  V  F  L  S  A  F  N  H  L  Y  F  S  S  *  W  L  S  I  Y  Y  R  F  W  H  V  G  D  H  P  *  G  Q  Q  E  V  Y  *  F  Y  V  Y  K  D  A  M  T  V  G  S  H  I  F  V  Y  V  T  N  F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  P  P  *  N  F  S  D  V  F  L  A  N  I  S  Y  N  F  G  G  F  P  *  Q  L  T  S  Q  I  L  L  W  T  L  G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C   : A  L  Y  P  C  *  E  M  *  C  V  L  H  L  L  V  V  L  R  G  P  I  S  T  T  K  S  R :   L  S  K  D  V  A  D  D  *  Y  V  F  L  M  *  *  L  E  I  P  Y  F  L  A  D  N  V  P  S  *  Y  S  S  A  M  I  L  I  S  Y  W  L  I  S  L  Y  M  F  M  L  L  C  M  I  L  A  L  V  T  Y  T  *  H  I  H  Q  K  H  Y </second_frame>
            <third_frame>   T  R  E  G  A  D  G  Y  D  *  L  A  *  F  C  C  C  *  D  Y  R  F  C  R  *  R  G  S  G  F  T  S  T  Y  D  P  R  G  G  Y  K  E  E  Q  D  A  Y  I  G  G  R  R  V  C  *  A  W  K  R  G  G  N  G  D  G  *  R  R  G  A  A  S  *  R  R  Y  A  S  C  D  S  *  R  E  W  *  Y  Q  E  C  *  N  H  D  N  F  R  G  T  G  P  T  N  A  D  C  E  E  L  E  E  A  *  R  E  D  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  R  *  A  H  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  K  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  T  S :   I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q  S  Q  R  G  K  S  L  K  S  L  F  S  F  L  K  T  S  F  W  L  S  T  R :   D  L  Q  G  S  I  Y  L  C  R  I  P  M  K  G  I  S  K  D  K  F  W  K  L  Q  C  N  L  C  P  K  P  L  P  V  *  K  R  R  F  L  G  R  F  S  C  L  Q  T  N  R  N  *  V  E  R  L  V  F  S  R  T  T  C  L  L  R  T  I  M  L  H  L  E  K  H  L  V  S  H  *  E  N  V  V  G  E  R  D  E  W  G  V  I  W  H  G  L  Q  R  F  I  L  L  L  F  G  I  S  N  P  C  Y  E  F  *  E  F  S  I  L  L  S  C  Y  L  G  D  Y  T  G  L  V  L  *  F  F  F  L  H  L  I  I  F  I  F  Q  A  D  G  *  V  S  T  T  D  F  G  M  L  V  I  I  H  E  D  N  R  K  F  T  S  S  M  S  I  K  M  P  *  L  W  V  H  T  F  L  F  M  L  L  I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  S  H  L  R  T  F  L  M  S  S  W  Q  T  F  L  I  I  L  E  V  S  L  S  N  *  H  L  K  F  F  C  G  L  *  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V  :  L  Y  T  P  V  R  R  C  D  V  F  C  I  C  W  L  C  C  E  V  Q  S  R  Q  Q  K  A   : G  F  R  R  M  L  Q  T  I  D  T  S  F  L  C  N  S  W  K  F  L  I  F  W  Q  I  M  C  H  R  S  I  L  L  L  *  F  L  *  V  I  G  *  S  V  Y  I  C  L  C  F  C  A  *  Y  *  L  *  *  H  I  H  N  I  F  I  K  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19555" stop="19929"/>
                    <exon start="19980" stop="20390"/>
                    <exon start="20523" stop="20792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLSLIQSTRNRRTGCLRRLRRRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHYLYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLEESILIPEDQFLAQHSGPARINISVPNTDEGNLKGQILEITVQSLSETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21227" stop="21351"/>
                    <exon start="21518" stop="21599"/>
                    <exon start="21694" stop="21771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWRFPLAINISNSSVDFRTYFCRRCACRGGRRLSQSHLPLLCFIPLLGDVMCSAFVGCVARSNLDNKKQAFEGCCRRLIRLSYVIVGNSLFSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19119" e_stop="19929"/>
            <exon e_start="19980" e_stop="20390"/>
            <exon e_start="20523" e_stop="21351"/>
            <exon e_start="21438" e_stop="21599"/>
            <exon e_start="21694" e_stop="21896"/>
            <exon e_start="22674" e_stop="22692"/>
            <exon e_start="23427" e_stop="23440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.278" acc_prob="0.228" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.969" acc_prob="0.986" e_score="0.579"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="19119" e_stop="19929" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="19980" e_stop="20390" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20523" e_stop="21351" e_length="829"/>
          </exon>
          <intron i_serial="3" don_prob="0.278" acc_prob="0.228">
            <gDNA_intron_boundary i_start="21352" i_stop="21437" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21438" e_stop="21599" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.875">
            <gDNA_intron_boundary i_start="21600" i_stop="21693" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="21694" e_stop="21896" e_length="203"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21897" i_stop="22673" i_length="777"/>
          </intron>
          <exon e_serial="6" e_score="0.579">
            <gDNA_exon_boundary e_start="22674" e_stop="22692" e_length="19"/>
          </exon>
          <intron i_serial="6" don_prob="0.969" acc_prob="0.986">
            <gDNA_intron_boundary i_start="22693" i_stop="23426" i_length="734"/>
          </intron>
          <exon e_serial="7" e_score="0.429">
            <gDNA_exon_boundary e_start="23427" e_stop="23440" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19119" stop="19785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19455" stop="19856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19456" stop="19865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20390"/>
              <exon start="20523" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20095" stop="20390"/>
              <exon start="20523" stop="20752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20708" stop="21078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20847" stop="21351"/>
              <exon start="21438" stop="21599"/>
              <exon start="21694" stop="21896"/>
              <exon start="22674" stop="22692"/>
              <exon start="23427" stop="23440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCCGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTAGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGATATCAAGAGTGCTGAAACCATGACAATTTCAGAGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC : TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG : GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAGGTTTATTTTGCTACTGTTCGGCATATCTAATCCTTGTTATGAGTTTTAAGAATTCTCTATACTTCTTTCATGTTATTTGGGAGATTATACTGGTCTTGTACTTTAGTTTTTCTTTCTGCATTTAATCATCTTTATTTTTCAAGCTGATGGCTGAGTATCTACTACAGATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAGCCACCTTAGAACTTTTCTGATGTCTTCTTGGCAAACATTTCTTATAATTTTGGAGGTTTCCCTTAGCAATTAACATCTCAAATTCTTCTGTGGACTTTAGGACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG : ATTCATTCTTTTGGTTTGTTTTGATGGAGTCTGCTGTATCCCCGTGGCTCCTCTGATGTGCCTTTATTTTATCAACACAGCTTTATACCCCTGTTAGGAGATGTGATGTGTTCTGCATTTGTTGGTTGTGTTGCGAGGTCCAATCTCGACAACAAAAAGCAG : GCTTTCGAAGGATGTTGCAGACGATTGATACGTCTTTCTTATGTAATAGTTGGAAATTCCTTATTTTCTGGCAGATAATGTGCCATCGTAGTATTCTTCTGCTATGATTCTTATAAGTTATTGGTTGATCAGTTTATATATGTTTATGCTTTTGTGCATGATATTAGCTCTAGTGACATATACATAACATATTCATCAAAAAC : AGATAGGGTACAAAAAAAG : GGGTAGGGTTAGGC</gDNA_template>
            <first_frame> E  Q  E  R  V  Q  M  A  M  I  D  W  H  D  F  V  V  V  E  T  I  D  F  A  D  D  E  D  Q  D  L  P  P  P  M  T  L  E  E  V  I  R  R  S  K  M  P  T  L  E  E  E  E  Y  V  E  P  G  K  E  V  E  M  E  M  D  E  E  E  V  Q  L  V  E  E  G  M  R  A  A  T  L  E  E  N  G  D  I  K  S  A  E  T  M  T  I  S  E  E  Q  D  P  P  M  R  I  V  K  N  W  K  R  P  E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  N  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L  P   : L  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A  R  A  K  E  A  K  A  *  R  V  Y  S  H  S  *  R  P  V  F  G  S  A  L   : G  T  C  K  D  Q  Y  I  C  A  E  Y  R  *  R  E  S  Q  R  T  N  S  G  N  Y  S  A  I  S  V  R  N  H  C  Q  S  K  R  E  D  F  W  G  D  S  A  A  C  K  Q  T  E  T  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  V  L  *  C  C  I  W  R  N  T  W  S  L  T  K  R  T  W  W  E  K  E  M  N  G  E  L  F  G  M  V  F  K  G  L  F  C  Y  C  S  A  Y  L  I  L  V  M  S  F  K  N  S  L  Y  F  F  H  V  I  W  E  I  I  L  V  L  Y  F  S  F  S  F  C  I  *  S  S  L  F  F  K  L  M  A  E  Y  L  L  Q  I  L  A  C  W  *  S  S  M  R  T  T  G  S  L  L  V  L  C  L  *  R  C  H  D  C  G  F  T  H  F  C  L  C  Y  *  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q  A  T  L  E  L  F  *  C  L  L  G  K  H  F  L  *  F  W  R  F  P  L  A  I  N  I  S  N  S  S  V  D  F  R  T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L  * :   F  I  L  L  V  C  F  D  G  V  C  C  I  P  V  A  P  L  M  C  L  Y  F  I  N  T  A  L  Y  P  C  *  E  M  *  C  V  L  H  L  L  V  V  L  R  G  P  I  S  T  T  K  S  R :   L  S  K  D  V  A  D  D  *  Y  V  F  L  M  *  *  L  E  I  P  Y  F  L  A  D  N  V  P  S  *  Y  S  S  A  M  I  L  I  S  Y  W  L  I  S  L  Y  M  F  M  L  L  C  M  I  L  A  L  V  T  Y  T  *  H  I  H  Q  K   : Q  I  G  Y  K  K  R :   G  R  V  R  </first_frame>
            <second_frame>  N  K  R  G  C  R  W  L  *  L  I  G  M  I  L  L  L  L  R  L  *  I  L  P  M  T  R  I  R  I  Y  L  H  L  *  P  *  R  R  L  *  G  G  A  R  C  L  H  W  R  K  K  S  M  L  S  L  E  K  R  W  K  W  R  W  M  K  K  R  C  S  *  L  K  K  V  C  E  L  R  L  L  K  R  M  V  I  S  R  V  L  K  P  *  Q  F  Q  R  N  R  T  H  Q  C  G  L  *  R  T  G  R  G  L  K  R  G  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  P  V  S  S  Y  L  L  M  R  C  L  N  I  *  G  S  L  S  L  I  Q  S  T  R  N  R  R  T  G  C  L  R  R  L  R  R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H  Y  L  :  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  E  E  S  I  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  I  S  V  P  N  T  D  E  G  N  L  K  G  Q  I  L  E  I  T  V  Q  S  L  S  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  G  S  Y  L  A  W  S  S  K  V  Y  F  A  T  V  R  H  I  *  S  L  L  *  V  L  R  I  L  Y  T  S  F  M  L  F  G  R  L  Y  W  S  C  T  L  V  F  L  S  A  F  N  H  L  Y  F  S  S  *  W  L  S  I  Y  Y  R  F  W  H  V  G  D  H  P  *  G  Q  Q  E  V  Y  *  F  Y  V  Y  K  D  A  M  T  V  G  S  H  I  F  V  Y  V  T  N  F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  P  P  *  N  F  S  D  V  F  L  A  N  I  S  Y  N  F  G  G  F  P  *  Q  L  T  S  Q  I  L  L  W  T  L  G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C   : D  S  F  F  W  F  V  L  M  E  S  A  V  S  P  W  L  L  *  C  A  F  I  L  S  T  Q  L  Y  T  P  V  R  R  C  D  V  F  C  I  C  W  L  C  C  E  V  Q  S  R  Q  Q  K  A   : G  F  R  R  M  L  Q  T  I  D  T  S  F  L  C  N  S  W  K  F  L  I  F  W  Q  I  M  C  H  R  S  I  L  L  L  *  F  L  *  V  I  G  *  S  V  Y  I  C  L  C  F  C  A  *  Y  *  L  *  *  H  I  H  N  I  F  I  K  N  :  R  *  G  T  K  K   : G  V  G  L  G </second_frame>
            <third_frame>   T  R  E  G  A  D  G  Y  D  *  L  A  *  F  C  C  C  *  D  Y  R  F  C  R  *  R  G  S  G  F  T  S  T  Y  D  P  R  G  G  Y  K  E  E  Q  D  A  Y  I  G  G  R  R  V  C  *  A  W  K  R  G  G  N  G  D  G  *  R  R  G  A  A  S  *  R  R  Y  A  S  C  D  S  *  R  E  W  *  Y  Q  E  C  *  N  H  D  N  F  R  G  T  G  P  T  N  A  D  C  E  E  L  E  E  A  *  R  E  D  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  R  *  A  H  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  K  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  T  S :   I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q  S  Q  R  G  K  S  L  K  S  L  F  S  F  L  K  T  S  F  W  L  S  T  R :   D  L  Q  G  S  I  Y  L  C  R  I  P  M  K  G  I  S  K  D  K  F  W  K  L  Q  C  N  L  C  P  K  P  L  P  V  *  K  R  R  F  L  G  R  F  S  C  L  Q  T  N  R  N  *  V  E  R  L  V  F  S  R  T  T  C  L  L  R  T  I  M  L  H  L  E  K  H  L  V  S  H  *  E  N  V  V  G  E  R  D  E  W  G  V  I  W  H  G  L  Q  R  F  I  L  L  L  F  G  I  S  N  P  C  Y  E  F  *  E  F  S  I  L  L  S  C  Y  L  G  D  Y  T  G  L  V  L  *  F  F  F  L  H  L  I  I  F  I  F  Q  A  D  G  *  V  S  T  T  D  F  G  M  L  V  I  I  H  E  D  N  R  K  F  T  S  S  M  S  I  K  M  P  *  L  W  V  H  T  F  L  F  M  L  L  I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  S  H  L  R  T  F  L  M  S  S  W  Q  T  F  L  I  I  L  E  V  S  L  S  N  *  H  L  K  F  F  C  G  L  *  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V  :  I  H  S  F  G  L  F  *  W  S  L  L  Y  P  R  G  S  S  D  V  P  L  F  Y  Q  H  S  F  I  P  L  L  G  D  V  M  C  S  A  F  V  G  C  V  A  R  S  N  L  D  N  K  K  Q  :  A  F  E  G  C  C  R  R  L  I  R  L  S  Y  V  I  V  G  N  S  L  F  S  G  R  *  C  A  I  V  V  F  F  C  Y  D  S  Y  K  L  L  V  D  Q  F  I  Y  V  Y  A  F  V  H  D  I  S  S  S  D  I  Y  I  T  Y  S  S  K  T :   D  R  V  Q  K  K  :  G  *  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19555" stop="19929"/>
                    <exon start="19980" stop="20390"/>
                    <exon start="20523" stop="20792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLSLIQSTRNRRTGCLRRLRRRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHYLYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLEESILIPEDQFLAQHSGPARINISVPNTDEGNLKGQILEITVQSLSETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21462" stop="21599"/>
                    <exon start="21694" stop="21771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLLYPRGSSDVPLFYQHSFIPLLGDVMCSAFVGCVARSNLDNKKQAFEGCCRRLIRLSYVIVGNSLFSGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="19119" e_stop="19929"/>
            <exon e_start="19980" e_stop="20390"/>
            <exon e_start="20523" e_stop="20822"/>
            <exon e_start="20990" e_stop="21179"/>
            <exon e_start="21280" e_stop="21351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.879" acc_prob="0.202" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="0.916"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="19119" e_stop="19929" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19930" i_stop="19979" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="19980" e_stop="20390" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20391" i_stop="20522" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="20523" e_stop="20822" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="0.879" acc_prob="0.202">
            <gDNA_intron_boundary i_start="20823" i_stop="20989" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="0.916">
            <gDNA_exon_boundary e_start="20990" e_stop="21179" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="21180" i_stop="21279" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="21280" e_stop="21351" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19119" stop="19785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19455" stop="19856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19456" stop="19865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20390"/>
              <exon start="20523" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19618" stop="19929"/>
              <exon start="19980" stop="20322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20095" stop="20390"/>
              <exon start="20523" stop="20752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20294" stop="20390"/>
              <exon start="20523" stop="20822"/>
              <exon start="20990" stop="21179"/>
              <exon start="21280" stop="21351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAAGAGAGGGTGCAGATGGCTATGATTGATTGGCATGATTTTGTTGTTGTTGAGACTATAGATTTTGCCGATGACGAGGATCAGGATTTACCTCCACCTATGACCCTAGAGGAGGTTATAAGGAGGAGCAAGATGCCTACATTGGAGGAAGAAGAGTATGTTGAGCCTGGAAAAGAGGTGGAAATGGAGATGGATGAAGAAGAGGTGCAGCTAGTTGAAGAAGGTATGCGAGCTGCGACTCTTGAAGAGAATGGTGATATCAAGAGTGCTGAAACCATGACAATTTCAGAGGAACAGGACCCACCAATGCGGATTGTGAAGAACTGGAAGAGGCCTGAAGAGAGGATCCTGGCAGAAAGGGACCCAACTAAGTATGTTGTCTCTCCTATAACCGGTGAGCTCATACCTATTAATGAGATGTCTGAACATATGAGGATCTCTCTCATTGATCCAAAGTACAAGGAACAGAAGGACAGGATGTTTGCGAAGATTAAGGAGACGACTCTTGCGCAGGATGATGAGATTTCTAGGAACATTGTTGGACTTGCAAGAACCCGTCCGGATATATTTGGTACCACAGAAGAAGAAGTTTCAAATGCGGTCAAGGCTGAGATTGAGAAAAAGAAGGAAGAGCCGAAGCAAGTCATATGGGATGGTCACACAGGTAGCATTGGTCGCACTGCGAACCAGGCAATGTCTCAGAACAGTGATGATCAGAATGATGCTGCAAATGATGCAAGAAACCTTCCTGGACCGCAGGCTCCTCCACCTCCCAGACCTGGTTTTCCATCTATTAGGCCACTACCTC : TATTCTACTCCTGGGGTTGCTGCTCCGCCTCCACCTCGACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCCACAGATGCCAGGTCAGCAAAATCTCATGGTGAATCGCCCTCCAATGCCTCCATCGATGGGTATGAATTCTCTTAACCTTCCCATTCCACCACCTCCTGGATCACAATTTACTCCTTTGGGAGCACCTCGACCCTTTGTTCCCCACCCGATGTCCCAGCCCGGAATGTCTATGGTCCCACCGCCTCCTATGCCCCAAGGAATGCCGCCACCCCCTCCACCAGAGGAAGCGCCTCCTCTCCCTGAAGAGCCAGAGCCAAAGAGGCAAAAGCTTGAAGAGTCTATTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCACTCG : GGACCTGCAAGGATCAATATATCTGTGCCGAATACCGATGAAGGGAATCTCAAAGGACAAATTCTGGAAATTACAGTGCAATCTCTGTCCGAAACCATTGCCAGTCTAAAAGAGAAGATTTCTGGGGAGATTCAGCTGCCTGCAAACAAACAGAAACTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCGTACTATAATGTTGCATCTGGAGAAACACTTGGTCTCTCACTAAGAGAACGTGGTGGGAGAAAGAGATGAATGGGGAGTTATTTGGCATGGTCTTCAAAG : ATTTTGGCATGTTGGTGATCATCCATGAGGACAACAGGAAGTTTACTAGTTCTATGTCTATAAAGATGCCATGACTGTGGGTTCACACATTTTTGTTTATGTTACTAATTTTGTGTTTGTCTCACCACCTGCAGTTGCTCCACCTTAACTACAGCTCAGTTGTTATTTTTTTCTATCTTCTGAGTCCAAG : GACCTATTTCTGTAGAAGATGTGCTTGTCGTGGTGGGAGACGCTTGTCCCAATCACACCTGCCTCTTTTGTG</gDNA_template>
            <first_frame> E  Q  E  R  V  Q  M  A  M  I  D  W  H  D  F  V  V  V  E  T  I  D  F  A  D  D  E  D  Q  D  L  P  P  P  M  T  L  E  E  V  I  R  R  S  K  M  P  T  L  E  E  E  E  Y  V  E  P  G  K  E  V  E  M  E  M  D  E  E  E  V  Q  L  V  E  E  G  M  R  A  A  T  L  E  E  N  G  D  I  K  S  A  E  T  M  T  I  S  E  E  Q  D  P  P  M  R  I  V  K  N  W  K  R  P  E  E  R  I  L  A  E  R  D  P  T  K  Y  V  V  S  P  I  T  G  E  L  I  P  I  N  E  M  S  E  H  M  R  I  S  L  I  D  P  K  Y  K  E  Q  K  D  R  M  F  A  K  I  K  E  T  T  L  A  Q  D  D  E  I  S  R  N  I  V  G  L  A  R  T  R  P  D  I  F  G  T  T  E  E  E  V  S  N  A  V  K  A  E  I  E  K  K  K  E  E  P  K  Q  V  I  W  D  G  H  T  G  S  I  G  R  T  A  N  Q  A  M  S  Q  N  S  D  D  Q  N  D  A  A  N  D  A  R  N  L  P  G  P  Q  A  P  P  P  P  R  P  G  F  P  S  I  R  P  L  P   : L  F  Y  S  W  G  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  D  A  R  S  A  K  S  H  G  E  S  P  S  N  A  S  I  D  G  Y  E  F  S  *  P  S  H  S  T  T  S  W  I  T  I  Y  S  F  G  S  T  S  T  L  C  S  P  P  D  V  P  A  R  N  V  Y  G  P  T  A  S  Y  A  P  R  N  A  A  T  P  S  T  R  G  S  A  S  S  P  *  R  A  R  A  K  E  A  K  A  *  R  V  Y  S  H  S  *  R  P  V  F  G  S  A  L   : G  T  C  K  D  Q  Y  I  C  A  E  Y  R  *  R  E  S  Q  R  T  N  S  G  N  Y  S  A  I  S  V  R  N  H  C  Q  S  K  R  E  D  F  W  G  D  S  A  A  C  K  Q  T  E  T  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  V  L  *  C  C  I  W  R  N  T  W  S  L  T  K  R  T  W  W  E  K  E  M  N  G  E  L  F  G  M  V  F  K   : D  F  G  M  L  V  I  I  H  E  D  N  R  K  F  T  S  S  M  S  I  K  M  P  *  L  W  V  H  T  F  L  F  M  L  L  I  L  C  L  S  H  H  L  Q  L  L  H  L  N  Y  S  S  V  V  I  F  F  Y  L  L  S  P  R :   T  Y  F  C  R  R  C  A  C  R  G  G  R  R  L  S  Q  S  H  L  P  L  L   </first_frame>
            <second_frame>  N  K  R  G  C  R  W  L  *  L  I  G  M  I  L  L  L  L  R  L  *  I  L  P  M  T  R  I  R  I  Y  L  H  L  *  P  *  R  R  L  *  G  G  A  R  C  L  H  W  R  K  K  S  M  L  S  L  E  K  R  W  K  W  R  W  M  K  K  R  C  S  *  L  K  K  V  C  E  L  R  L  L  K  R  M  V  I  S  R  V  L  K  P  *  Q  F  Q  R  N  R  T  H  Q  C  G  L  *  R  T  G  R  G  L  K  R  G  S  W  Q  K  G  T  Q  L  S  M  L  S  L  L  *  P  V  S  S  Y  L  L  M  R  C  L  N  I  *  G  S  L  S  L  I  Q  S  T  R  N  R  R  T  G  C  L  R  R  L  R  R  R  L  L  R  R  M  M  R  F  L  G  T  L  L  D  L  Q  E  P  V  R  I  Y  L  V  P  Q  K  K  K  F  Q  M  R  S  R  L  R  L  R  K  R  R  K  S  R  S  K  S  Y  G  M  V  T  Q  V  A  L  V  A  L  R  T  R  Q  C  L  R  T  V  M  I  R  M  M  L  Q  M  M  Q  E  T  F  L  D  R  R  L  L  H  L  P  D  L  V  F  H  L  L  G  H  Y  L  :  Y  S  T  P  G  V  A  A  P  P  P  P  R  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  P  Q  M  P  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  G  M  N  S  L  N  L  P  I  P  P  P  P  G  S  Q  F  T  P  L  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  E  E  S  I  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  I  S  V  P  N  T  D  E  G  N  L  K  G  Q  I  L  E  I  T  V  Q  S  L  S  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  G  S  Y  L  A  W  S  S  K  :  I  L  A  C  W  *  S  S  M  R  T  T  G  S  L  L  V  L  C  L  *  R  C  H  D  C  G  F  T  H  F  C  L  C  Y  *  F  C  V  C  L  T  T  C  S  C  S  T  L  T  T  A  Q  L  L  F  F  S  I  F  *  V  Q   : G  P  I  S  V  E  D  V  L  V  V  V  G  D  A  C  P  N  H  T  C  L  F  C  </second_frame>
            <third_frame>   T  R  E  G  A  D  G  Y  D  *  L  A  *  F  C  C  C  *  D  Y  R  F  C  R  *  R  G  S  G  F  T  S  T  Y  D  P  R  G  G  Y  K  E  E  Q  D  A  Y  I  G  G  R  R  V  C  *  A  W  K  R  G  G  N  G  D  G  *  R  R  G  A  A  S  *  R  R  Y  A  S  C  D  S  *  R  E  W  *  Y  Q  E  C  *  N  H  D  N  F  R  G  T  G  P  T  N  A  D  C  E  E  L  E  E  A  *  R  E  D  P  G  R  K  G  P  N  *  V  C  C  L  S  Y  N  R  *  A  H  T  Y  *  *  D  V  *  T  Y  E  D  L  S  H  *  S  K  V  Q  G  T  E  G  Q  D  V  C  E  D  *  G  D  D  S  C  A  G  *  *  D  F  *  E  H  C  W  T  C  K  N  P  S  G  Y  I  W  Y  H  R  R  R  S  F  K  C  G  Q  G  *  D  *  E  K  E  G  R  A  E  A  S  H  M  G  W  S  H  R  *  H  W  S  H  C  E  P  G  N  V  S  E  Q  *  *  S  E  *  C  C  K  *  C  K  K  P  S  W  T  A  G  S  S  T  S  Q  T  W  F  S  I  Y  *  A  T  T  S :   I  L  L  L  G  L  L  L  R  L  H  L  D  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  H  R  C  Q  V  S  K  I  S  W  *  I  A  L  Q  C  L  H  R  W  V  *  I  L  L  T  F  P  F  H  H  L  L  D  H  N  L  L  L  W  E  H  L  D  P  L  F  P  T  R  C  P  S  P  E  C  L  W  S  H  R  L  L  C  P  K  E  C  R  H  P  L  H  Q  R  K  R  L  L  S  L  K  S  Q  S  Q  R  G  K  S  L  K  S  L  F  S  F  L  K  T  S  F  W  L  S  T  R :   D  L  Q  G  S  I  Y  L  C  R  I  P  M  K  G  I  S  K  D  K  F  W  K  L  Q  C  N  L  C  P  K  P  L  P  V  *  K  R  R  F  L  G  R  F  S  C  L  Q  T  N  R  N  *  V  E  R  L  V  F  S  R  T  T  C  L  L  R  T  I  M  L  H  L  E  K  H  L  V  S  H  *  E  N  V  V  G  E  R  D  E  W  G  V  I  W  H  G  L  Q  R :   F  W  H  V  G  D  H  P  *  G  Q  Q  E  V  Y  *  F  Y  V  Y  K  D  A  M  T  V  G  S  H  I  F  V  Y  V  T  N  F  V  F  V  S  P  P  A  V  A  P  P  *  L  Q  L  S  C  Y  F  F  L  S  S  E  S  K  :  D  L  F  L  *  K  M  C  L  S  W  W  E  T  L  V  P  I  T  P  A  S  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19555" stop="19929"/>
                    <exon start="19980" stop="20390"/>
                    <exon start="20523" stop="20792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLSLIQSTRNRRTGCLRRLRRRLLRRMMRFLGTLLDLQEPVRIYLVPQKKKFQMRSRLRLRKRRKSRSKSYGMVTQVALVALRTRQCLRTVMIRMMLQMMQETFLDRRLLHLPDLVFHLLGHYLYSTPGVAAPPPPRPPMVNMIPQVRPPPPPMPQMPGQQNLMVNRPPMPPSMGMNSLNLPIPPPPGSQFTPLGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLEESILIPEDQFLAQHSGPARINISVPNTDEGNLKGQILEITVQSLSETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19682" PGL_stop="19233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19682" e_stop="19233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="19682" e_stop="19233" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19682" stop="19233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGACGGGTTCTTGCAAGTCCAACAATGTTCCTAGAAATCTCATCATCCTGCGCAAGAGTCGTCTCCTTAATCTTCGCAAACATCCTGTCCTTCTGTTCCTTGTACTTTGGATCAATGAGAGAGATCCTCATATGTTCAGACATCTCATTAATAGGTATGAGCTCACCGGTTATAGGAGAGACAACATACTTAGTTGGGTCCCTTTCTGCCAGGATCCTCTCTTCAGGCCTCTTCCAGTTCTTCACAATCCGCATTGGTGGGTCCTGTTCCTCTGAAATTGTCATGGTTTCAGCACTCTTGATATCACCATTCTCTTCAAGAGTCGCAGCTCGCATACCTTCTTCAACTAGCTGCACCTCTTCTTCATCCATCTCCATTTCCACCTCTTTTCCAGGCTCAACATACTCTTCTTCCTCCAATGTAGGCATCTTGCTCCTCCTTATAACCTC</gDNA_template>
            <first_frame> R  T  G  S  C  K  S  N  N  V  P  R  N  L  I  I  L  R  K  S  R  L  L  N  L  R  K  H  P  V  L  L  F  L  V  L  W  I  N  E  R  D  P  H  M  F  R  H  L  I  N  R  Y  E  L  T  G  Y  R  R  D  N  I  L  S  W  V  P  F  C  Q  D  P  L  F  R  P  L  P  V  L  H  N  P  H  W  W  V  L  F  L  *  N  C  H  G  F  S  T  L  D  I  T  I  L  F  K  S  R  S  S  H  T  F  F  N  *  L  H  L  F  F  I  H  L  H  F  H  L  F  S  R  L  N  I  L  F  F  L  Q  C  R  H  L  A  P  P  Y  N  L </first_frame>
            <second_frame>  G  R  V  L  A  S  P  T  M  F  L  E  I  S  S  S  C  A  R  V  V  S  L  I  F  A  N  I  L  S  F  C  S  L  Y  F  G  S  M  R  E  I  L  I  C  S  D  I  S  L  I  G  M  S  S  P  V  I  G  E  T  T  Y  L  V  G  S  L  S  A  R  I  L  S  S  G  L  F  Q  F  F  T  I  R  I  G  G  S  C  S  S  E  I  V  M  V  S  A  L  L  I  S  P  F  S  S  R  V  A  A  R  I  P  S  S  T  S  C  T  S  S  S  S  I  S  I  S  T  S  F  P  G  S  T  Y  S  S  S  S  N  V  G  I  L  L  L  L  I  T   </second_frame>
            <third_frame>   D  G  F  L  Q  V  Q  Q  C  S  *  K  S  H  H  P  A  Q  E  S  S  P  *  S  S  Q  T  S  C  P  S  V  P  C  T  L  D  Q  *  E  R  S  S  Y  V  Q  T  S  H  *  *  V  *  A  H  R  L  *  E  R  Q  H  T  *  L  G  P  F  L  P  G  S  S  L  Q  A  S  S  S  S  S  Q  S  A  L  V  G  P  V  P  L  K  L  S  W  F  Q  H  S  *  Y  H  H  S  L  Q  E  S  Q  L  A  Y  L  L  Q  L  A  A  P  L  L  H  P  S  P  F  P  P  L  F  Q  A  Q  H  T  L  L  P  P  M  *  A  S  C  S  S  L  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19681" stop="19235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRVLASPTMFLEISSSCARVVSLIFANILSFCSLYFGSMREILICSDISLIGMSSPVIGETTYLVGSLSARILSSGLFQFFTIRIGGSCSSEIVMVSALLISPFSSRVAARIPSSTSCTSSSSISISTSFPGSTYSSSSNVGILLLLIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="22910" PGL_stop="21877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22910" e_stop="22702"/>
            <exon e_start="22312" e_stop="21877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22910" e_stop="22702" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22701" i_stop="22313" i_length="389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22312" e_stop="21877" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22910" stop="22702"/>
              <exon start="22312" stop="21877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22905" stop="22702"/>
              <exon start="22312" stop="21988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22892" stop="22702"/>
              <exon start="22312" stop="22107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22875" stop="22702"/>
              <exon start="22312" stop="21891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22875" stop="22702"/>
              <exon start="22312" stop="22205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277149" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22831" stop="22702"/>
              <exon start="22312" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22275" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22186" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22159" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22151" stop="21886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCTTAAAAAAATAAAAAATATGGGTTTAAAAGGTAAGTTGATTGCTTCAGTGGAGATGAAGTGTGGAGAAGGCTCATTTTTCGATATTTTTCACATTAATACTAATCAGGTACCCAATATAAGTCCTAAAAATATCGTCCATTTTGGAATTCACGAAGGTGAAAGCGTTAAGACTGGTTCGATTGTTAGTTGGAAATACAACGAAG : CTGGACAAGAAATGTATATGAAGCACTTAATTGAAGCTGCCGATCCTCAGCAGAAATTAATCAAATGGAAAGTTATCGAAGGAGATTTATTGAAGTTGTATAAATACTGTAATTTTACAACATCTTGTGATGGCCAGTGGACTACTTGGACAATTGACTACGAAAAGAAAACTGAAGATACCCCAGAACCCCTCCTTCACTTGGGTGTTATCCTTGCCATGACCAAGGATATAGAAAGTCACCTTCTCAAGAAATAATGTGTGTATGTGTGATGAATAATTTGGCTAGTTCTAGCTAGCATGTGGAATAATAAATAATATAATGTATGTGTGACTATGTAGATACACATTATAAGTATGTGTGTGTTGGTGTGATGAATATTTGGCTAGTTCTAGCCAGCATGTGGAATAAGTAATGTTTTTGATGAATATGTTAT</gDNA_template>
            <first_frame> Y  S  *  K  N  K  K  Y  G  F  K  R  *  V  D  C  F  S  G  D  E  V  W  R  R  L  I  F  R  Y  F  S  H  *  Y  *  S  G  T  Q  Y  K  S  *  K  Y  R  P  F  W  N  S  R  R  *  K  R  *  D  W  F  D  C  *  L  E  I  Q  R  S :   W  T  R  N  V  Y  E  A  L  N  *  S  C  R  S  S  A  E  I  N  Q  M  E  S  Y  R  R  R  F  I  E  V  V  *  I  L  *  F  Y  N  I  L  *  W  P  V  D  Y  L  D  N  *  L  R  K  E  N  *  R  Y  P  R  T  P  P  S  L  G  C  Y  P  C  H  D  Q  G  Y  R  K  S  P  S  Q  E  I  M  C  V  C  V  M  N  N  L  A  S  S  S  *  H  V  E  *  *  I  I  *  C  M  C  D  Y  V  D  T  H  Y  K  Y  V  C  V  G  V  M  N  I  W  L  V  L  A  S  M  W  N  K  *  C  F  *  *  I  C  Y </first_frame>
            <second_frame>  I  L  K  K  I  K  N  M  G  L  K  G  K  L  I  A  S  V  E  M  K  C  G  E  G  S  F  F  D  I  F  H  I  N  T  N  Q  V  P  N  I  S  P  K  N  I  V  H  F  G  I  H  E  G  E  S  V  K  T  G  S  I  V  S  W  K  Y  N  E   : A  G  Q  E  M  Y  M  K  H  L  I  E  A  A  D  P  Q  Q  K  L  I  K  W  K  V  I  E  G  D  L  L  K  L  Y  K  Y  C  N  F  T  T  S  C  D  G  Q  W  T  T  W  T  I  D  Y  E  K  K  T  E  D  T  P  E  P  L  L  H  L  G  V  I  L  A  M  T  K  D  I  E  S  H  L  L  K  K  *  C  V  Y  V  *  *  I  I  W  L  V  L  A  S  M  W  N  N  K  *  Y  N  V  C  V  T  M  *  I  H  I  I  S  M  C  V  L  V  *  *  I  F  G  *  F  *  P  A  C  G  I  S  N  V  F  D  E  Y  V   </second_frame>
            <third_frame>   F  L  K  K  *  K  I  W  V  *  K  V  S  *  L  L  Q  W  R  *  S  V  E  K  A  H  F  S  I  F  F  T  L  I  L  I  R  Y  P  I  *  V  L  K  I  S  S  I  L  E  F  T  K  V  K  A  L  R  L  V  R  L  L  V  G  N  T  T  K  :  L  D  K  K  C  I  *  S  T  *  L  K  L  P  I  L  S  R  N  *  S  N  G  K  L  S  K  E  I  Y  *  S  C  I  N  T  V  I  L  Q  H  L  V  M  A  S  G  L  L  G  Q  L  T  T  K  R  K  L  K  I  P  Q  N  P  S  F  T  W  V  L  S  L  P  *  P  R  I  *  K  V  T  F  S  R  N  N  V  C  M  C  D  E  *  F  G  *  F  *  L  A  C  G  I  I  N  N  I  M  Y  V  *  L  C  R  Y  T  L  *  V  C  V  C  W  C  D  E  Y  L  A  S  S  S  Q  H  V  E  *  V  M  F  L  M  N  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22909" stop="22702"/>
                    <exon start="22312" stop="22056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKKIKNMGLKGKLIASVEMKCGEGSFFDIFHINTNQVPNISPKNIVHFGIHEGESVKTGSIVSWKYNEAGQEMYMKHLIEAADPQQKLIKWKVIEGDLLKLYKYCNFTTSCDGQWTTWTIDYEKKTEDTPEPLLHLGVILAMTKDIESHLLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32621" PGL_stop="31266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32621" e_stop="32583"/>
            <exon e_start="32501" e_stop="32400"/>
            <exon e_start="31943" e_stop="31858"/>
            <exon e_start="31356" e_stop="31266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="0.923"/>
          <exon-intron don_prob="0.927" acc_prob="0.963" e_score="0.931"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.849"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="32621" e_stop="32583" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="32582" i_stop="32502" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="32501" e_stop="32400" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="0.963">
            <gDNA_intron_boundary i_start="32399" i_stop="31944" i_length="456"/>
          </intron>
          <exon e_serial="3" e_score="0.849">
            <gDNA_exon_boundary e_start="31943" e_stop="31858" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="31857" i_stop="31357" i_length="501"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="31356" e_stop="31266" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32621" stop="32583"/>
              <exon start="32501" stop="32400"/>
              <exon start="31943" stop="31858"/>
              <exon start="31356" stop="31266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCATGGCTAGCTCAACTAGTTGCAGTCAAGCTGACG : GAATAATTGTAAATAATCATGAGCTCACTCCTTTGGAAAAGCATGTTATGTTTTTCGATATCAATAATGATGGAATAATTTATCCTTCAGAAACGTATAAAG : CTTTTAGAAAGATGGGGCGTGGTATTTTCCGTTCTATGTTTTCTGCTGTTCTCATTCATTTTAATCTCAGTTACAAGACTCGACCG : GGGAAATGGCCATCTTTACTCTTCCCTATTGTGGTAGAAAATATTAAATATGCCATACATGGTAGTGATTCTGGTGCCTATGACTCTGAAG</gDNA_template>
            <first_frame> F  P  W  L  A  Q  L  V  A  V  K  L  T  :  E  *  L  *  I  I  M  S  S  L  L  W  K  S  M  L  C  F  S  I  S  I  M  M  E  *  F  I  L  Q  K  R  I  K  :  L  L  E  R  W  G  V  V  F  S  V  L  C  F  L  L  F  S  F  I  L  I  S  V  T  R  L  D  R :   G  N  G  H  L  Y  S  S  L  L  W  *  K  I  L  N  M  P  Y  M  V  V  I  L  V  P  M  T  L  K </first_frame>
            <second_frame>  F  H  G  *  L  N  *  L  Q  S  S  *  R :   N  N  C  K  *  S  *  A  H  S  F  G  K  A  C  Y  V  F  R  Y  Q  *  *  W  N  N  L  S  F  R  N  V  *  S :   F  *  K  D  G  A  W  Y  F  P  F  Y  V  F  C  C  S  H  S  F  *  S  Q  L  Q  D  S  T   : G  E  M  A  I  F  T  L  P  Y  C  G  R  K  Y  *  I  C  H  T  W  *  *  F  W  C  L  *  L  *   </second_frame>
            <third_frame>   S  M  A  S  S  T  S  C  S  Q  A  D   : G  I  I  V  N  N  H  E  L  T  P  L  E  K  H  V  M  F  F  D  I  N  N  D  G  I  I  Y  P  S  E  T  Y  K   : A  F  R  K  M  G  R  G  I  F  R  S  M  F  S  A  V  L  I  H  F  N  L  S  Y  K  T  R  P  :  G  K  W  P  S  L  L  F  P  I  V  V  E  N  I  K  Y  A  I  H  G  S  D  S  G  A  Y  D  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32619" stop="32583"/>
                    <exon start="32501" stop="32400"/>
                    <exon start="31943" stop="31858"/>
                    <exon start="31356" stop="31267"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMASSTSCSQADGIIVNNHELTPLEKHVMFFDINNDGIIYPSETYKAFRKMGRGIFRSMFSAVLIHFNLSYKTRPGKWPSLLFPIVVENIKYAIHGSDSGAYDSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="35456" PGL_stop="37815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35470" e_stop="35661"/>
            <exon e_start="37127" e_stop="37180"/>
            <exon e_start="37273" e_stop="37815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.596" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35470" e_stop="35661" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.596">
            <gDNA_intron_boundary i_start="35662" i_stop="37126" i_length="1465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37127" e_stop="37180" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="37181" i_stop="37272" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="37273" e_stop="37815" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35470" stop="35661"/>
              <exon start="37127" stop="37180"/>
              <exon start="37273" stop="37733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35470" stop="35661"/>
              <exon start="37127" stop="37180"/>
              <exon start="37273" stop="37450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35499" stop="35661"/>
              <exon start="37127" stop="37180"/>
              <exon start="37273" stop="37815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG : CTTCTTGCGAGCTCAACACACCTGGCTCCTTGAATTATCTCTCTTATATTTCGG : GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAGAAGAACTATATGAAATACGATGTCCATGTGTCAAATGTTGCTACACAACTGTAGGAACACGCGAAACAATCGAGTCACATTTGAAAGTTTATGGAATAATTCAAAAGTATACTTTAGGGGTGTCTGGAAATGATTCACCAGGTGCTATAAGTGAGGGACGAGGCAAAGAACAGGATGTTAGATCTATGCGCTCTTTGGGGGCATCTGGAAATGATGTAGGATCCTTCCATCAAAATTCTCTTTACTCT</gDNA_template>
            <first_frame> K  K  E  T  Y  F  I  F  L  L  K  L  K  T  L  F  *  F  S  S  E  I  C  *  E  S  F  S  G  D  G  D  G  Y  S  Q  R  *  V  P  E  L  C  N  R  L  S  K  M  D  Y  H  F  L  A  K  S  K  T  E  *  G  T  L  :  L  L  A  S  S  T  H  L  A  P  *  I  I  S  L  I  F  R  :  V  M  T  P  N  K  R  P  K  K  L  V  D  N  G  P  D  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  N  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  D  E  A  S  K  V  M  A  P  N  N  R  Q  K  Q  L  V  D  N  G  P  D  E  A  Y  L  I  G  M  Q  K  F  L  D  Y  A  F  G  R  T  E  E  L  Y  E  I  R  C  P  C  V  K  C  C  Y  T  T  V  G  T  R  E  T  I  E  S  H  L  K  V  Y  G  I  I  Q  K  Y  T  L  G  V  S  G  N  D  S  P  G  A  I  S  E  G  R  G  K  E  Q  D  V  R  S  M  R  S  L  G  A  S  G  N  D  V  G  S  F  H  Q  N  S  L  Y  S </first_frame>
            <second_frame>  K  R  K  H  I  S  F  F  F  *  N  *  K  P  Y  F  D  F  L  Q  R  S  A  E  N  R  F  P  A  T  A  T  A  T  L  N  V  K  F  L  N  C  A  I  V  F  Q  R  W  T  I  I  F  W  R  N  R  K  L  N  E  E  L  C :   F  L  R  A  Q  H  T  W  L  L  E  L  S  L  L  Y  F  G :   *  *  H  L  I  R  D  R  R  N  L  L  I  M  D  L  M  K  P  R  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  M  K  P  P  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  T  K  P  P  R  L  W  H  L  I  I  D  R  S  N  L  L  I  M  D  L  M  K  P  T  *  S  G  C  K  S  F  W  I  M  L  L  E  E  Q  K  N  Y  M  K  Y  D  V  H  V  S  N  V  A  T  Q  L  *  E  H  A  K  Q  S  S  H  I  *  K  F  M  E  *  F  K  S  I  L  *  G  C  L  E  M  I  H  Q  V  L  *  V  R  D  E  A  K  N  R  M  L  D  L  C  A  L  W  G  H  L  E  M  M  *  D  P  S  I  K  I  L  F  T   </second_frame>
            <third_frame>   K  G  N  I  F  H  F  S  S  E  I  K  N  P  I  L  I  F  F  R  D  L  L  R  I  V  F  R  R  R  R  R  L  L  S  T  L  S  S  *  T  V  Q  S  S  F  K  D  G  L  S  F  S  G  E  I  E  N  *  M  R  N  S   : A  S  C  E  L  N  T  P  G  S  L  N  Y  L  S  Y  I  S   : G  D  D  T  *  *  E  T  E  E  T  C  *  *  W  T  *  *  S  L  E  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  *  S  L  Q  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  R  S  L  Q  G  Y  G  T  *  *  *  T  E  A  T  C  *  *  W  T  *  *  S  L  L  N  R  D  A  K  V  F  G  L  C  F  W  K  N  R  R  T  I  *  N  T  M  S  M  C  Q  M  L  L  H  N  C  R  N  T  R  N  N  R  V  T  F  E  S  L  W  N  N  S  K  V  Y  F  R  G  V  W  K  *  F  T  R  C  Y  K  *  G  T  R  Q  R  T  G  C  *  I  Y  A  L  F  G  G  I  W  K  *  C  R  I  L  P  S  K  F  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37160" stop="37180"/>
                    <exon start="37273" stop="37815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IISLIFRVMTPNKRPKKLVDNGPDEASKVMTPNKRQKQLVDNGPNEASKVMTPNKRQKQLVDNGPDEASKVMAPNNRQKQLVDNGPDEAYLIGMQKFLDYAFGRTEELYEIRCPCVKCCYTTVGTRETIESHLKVYGIIQKYTLGVSGNDSPGAISEGRGKEQDVRSMRSLGASGNDVGSFHQNSLYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35507" stop="35661"/>
                    <exon start="37127" stop="37180"/>
                    <exon start="37273" stop="37276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPYFDFLQRSAENRFPATATATLNVKFLNCAIVFQRWTIIFWRNRKLNEELCFLRAQHTWLLELSLLYFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35456" e_stop="35661"/>
            <exon e_start="37273" e_stop="37567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.989" e_score="0.961"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="35456" e_stop="35661" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35662" i_stop="37272" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="37273" e_stop="37567" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35456" stop="35661"/>
              <exon start="37273" stop="37567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCGAATAATTAAAAAAGGAAACATATTTCATTTTTCTTCTGAAATTAAAAACCCTATTTTGATTTTCTTCAGAGATCTGCTGAGAATCGTTTTCCGGCGACGGCGACGGCTACTCTCAACGTTAAGTTCCTGAACTGTGCAATCGTCTTTCAAAGATGGACTATCATTTTCTGGCGAAATCGAAAACTGAATGAGGAACTCTG : GTGATGACACCTAATAAGAGACCGAAGAAACTTGTTGATAATGGACCTGATGAAGCCTCGAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTAATGAAGCCTCCAAGGTTATGACACCTAATAAGAGACAGAAGCAACTTGTTGATAATGGACCTGACGAAGCCTCCAAGGTTATGGCACCTAATAATAGACAGAAGCAACTTGTTGATAATGGACCTGATGAAGCCTACTTAATCGGGATGCAAAAGTTTTTGGATTATGCTTTTGGAAGAACAG</gDNA_template>
            <first_frame> R  A  N  N  *  K  R  K  H  I  S  F  F  F  *  N  *  K  P  Y  F  D  F  L  Q  R  S  A  E  N  R  F  P  A  T  A  T  A  T  L  N  V  K  F  L  N  C  A  I  V  F  Q  R  W  T  I  I  F  W  R  N  R  K  L  N  E  E  L  W :   *  *  H  L  I  R  D  R  R  N  L  L  I  M  D  L  M  K  P  R  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  M  K  P  P  R  L  *  H  L  I  R  D  R  S  N  L  L  I  M  D  L  T  K  P  P  R  L  W  H  L  I  I  D  R  S  N  L  L  I  M  D  L  M  K  P  T  *  S  G  C  K  S  F  W  I  M  L  L  E  E  Q </first_frame>
            <second_frame>  E  R  I  I  K  K  G  N  I  F  H  F  S  S  E  I  K  N  P  I  L  I  F  F  R  D  L  L  R  I  V  F  R  R  R  R  R  L  L  S  T  L  S  S  *  T  V  Q  S  S  F  K  D  G  L  S  F  S  G  E  I  E  N  *  M  R  N  S   : G  D  D  T  *  *  E  T  E  E  T  C  *  *  W  T  *  *  S  L  E  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  *  S  L  Q  G  Y  D  T  *  *  E  T  E  A  T  C  *  *  W  T  *  R  S  L  Q  G  Y  G  T  *  *  *  T  E  A  T  C  *  *  W  T  *  *  S  L  L  N  R  D  A  K  V  F  G  L  C  F  W  K  N   </second_frame>
            <third_frame>   S  E  *  L  K  K  E  T  Y  F  I  F  L  L  K  L  K  T  L  F  *  F  S  S  E  I  C  *  E  S  F  S  G  D  G  D  G  Y  S  Q  R  *  V  P  E  L  C  N  R  L  S  K  M  D  Y  H  F  L  A  K  S  K  T  E  *  G  T  L  :  V  M  T  P  N  K  R  P  K  K  L  V  D  N  G  P  D  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  N  E  A  S  K  V  M  T  P  N  K  R  Q  K  Q  L  V  D  N  G  P  D  E  A  S  K  V  M  A  P  N  N  R  Q  K  Q  L  V  D  N  G  P  D  E  A  Y  L  I  G  M  Q  K  F  L  D  Y  A  F  G  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35653" stop="35661"/>
                    <exon start="37273" stop="37566"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLVMTPNKRPKKLVDNGPDEASKVMTPNKRQKQLVDNGPNEASKVMTPNKRQKQLVDNGPDEASKVMAPNNRQKQLVDNGPDEAYLIGMQKFLDYAFGRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45985" PGL_stop="52214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51211" e_stop="51784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="51211" e_stop="51784" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51211" stop="51784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51212" stop="51618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTATTTAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAAACATAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGAAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATTTGTAAAACTTACCAGAATTTGGAATACTCTTTTGAAAAATCCAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTACCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGAGAATCAATCCACAGCAGTAAAGTACACGAAGAAATATATGTGTTTTTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGATACGACCATTAA</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  F  N  F  L  K  I  V  A  N  L  C  *  E  K  H  K  L  L  V  V  I  N  H  S  E  T  R  R  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  *  F  V  K  L  T  R  I  W  N  T  L  L  K  N  P  G  R  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  T  L  *  Y  P  R  F  D  L  E  Y  N  L  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  E  N  Q  S  T  A  V  K  Y  T  K  K  Y  M  C  F  *  K  E  G  R  S  E  N  F  V  R  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  L  S  E  L  I  R  P  L  </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  Y  L  I  S  L  R  L  L  P  I  C  V  K  K  N  I  N  Y  W  L  *  *  I  I  Q  K  H  E  E  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  F  N  L  *  N  L  P  E  F  G  I  L  F  *  K  I  Q  E  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  L  P  S  S  I  R  G  L  I  W  N  I  T  S  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  *  S  T  R  R  N  I  C  V  F  K  K  K  E  D  Q  K  I  S  L  G  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  L  P  F  Q  N  *  Y  D  H  * </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  I  *  F  P  *  D  C  C  Q  S  V  L  R  K  T  *  I  T  G  C  N  K  S  F  R  N  T  K  K  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  E  K  S  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  Y  P  L  V  S  E  V  *  F  G  I  *  P  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  R  E  S  I  H  S  S  K  V  H  E  E  I  Y  V  F  L  K  R  R  K  I  R  K  F  R  *  E  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  Y  P  F  R  I  D  T  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0098C07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45985" e_stop="46247"/>
            <exon e_start="46414" e_stop="46460"/>
            <exon e_start="51030" e_stop="51039"/>
            <exon e_start="51984" e_stop="52214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.913"/>
          <exon-intron don_prob="0.000" acc_prob="0.896" e_score="0.915"/>
          <exon-intron don_prob="0.843" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="45985" e_stop="46247" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46248" i_stop="46413" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="46414" e_stop="46460" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="46461" i_stop="51029" i_length="4569"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="51030" e_stop="51039" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.843" acc_prob="0.000">
            <gDNA_intron_boundary i_start="51040" i_stop="51983" i_length="944"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="51984" e_stop="52214" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45985" stop="46247"/>
              <exon start="46414" stop="46460"/>
              <exon start="51030" stop="51039"/>
              <exon start="51984" stop="52214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45985" stop="46247"/>
              <exon start="46414" stop="46460"/>
              <exon start="51030" stop="51039"/>
              <exon start="51984" stop="52214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCTACTGTCAGAGAATCAATCCACAGCAATAAAGTACACGAAGAAATATATGTGTTTTTAAAAAGAAGGAAGATCAGAAAATTTCGTTAGGAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTCATGGCGGGAAATTTT : AAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCTGAAGCGA : ACCAAGAGTG : CGAGCGACGACGACGGCGCGAGGGGTCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCACTACTGATGAGGGACTATTGCCTTTTTCAATAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</gDNA_template>
            <first_frame> K  L  Y  C  Q  R  I  N  P  Q  Q  *  S  T  R  R  N  I  C  V  F  K  K  K  E  D  Q  K  I  S  L  G  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  L  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  S  W  R  E  I  L :   K  L  S  L  D  R  S  F  A  K  A  K  A  E  A   : N  Q  E  C :   E  R  R  R  R  R  E  G  S  L  F  P  T  L  L  T  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  *  *  G  T  I  A  F  F  N  K  A  L  E  D  F  S  S  S  Q  P  F  K  F  *  T  F  Q  I  P  L  L  P  S  I  S  H  Q  F  L  L  H  T  Q   </first_frame>
            <second_frame>  N  S  T  V  R  E  S  I  H  S  N  K  V  H  E  E  I  Y  V  F  L  K  R  R  K  I  R  K  F  R  *  E  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  Y  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  H  G  G  K  F   : *  N  Y  L  S  I  D  H  L  P  K  P  K  L  K  R  :  T  K  S   : A  S  D  D  D  G  A  R  G  P  S  F  Q  P  F  *  Q  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  T  T  D  E  G  L  L  P  F  S  I  K  H  *  R  T  F  Q  V  P  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  P  I  N  S  C  Y  I  P  N  </second_frame>
            <third_frame>   T  L  L  S  E  N  Q  S  T  A  I  K  Y  T  K  K  Y  M  C  F  *  K  E  G  R  S  E  N  F  V  R  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  M  A  G  N  F  :  K  I  I  S  R  S  I  I  C  Q  S  Q  S  *  S  E :   P  R  V  :  R  A  T  T  T  A  R  G  V  P  L  S  N  P  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  L  M  R  D  Y  C  L  F  Q  *  S  I  R  G  L  F  K  F  P  T  F  Q  V  L  N  F  S  N  S  S  P  S  L  Y  F  P  S  I  L  A  T  Y  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46171" stop="46247"/>
                    <exon start="46414" stop="46460"/>
                    <exon start="51030" stop="51039"/>
                    <exon start="51984" stop="52086"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVANFQMVLTVPESCNLSEQSWREILKLSLDRSFAKAKAEANQECERRRRREGSLFPTLLTINRSVYLFKLSYFHFHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="50762" PGL_stop="50368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50762" e_stop="50368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="50762" e_stop="50368" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50762" stop="50368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50758" stop="50396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGCAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCAATGGAGTTAATATTGTTGAAGAAGCTTCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  A  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  S  S  T  I  N  G  V  N  I  V  E  E  A  S  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  Q  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  G  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  M  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  K  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  Q  W  S  *  Y  C  *  R  S  F  Y  Q  R  Q  K  E  K  E  V  Q  R  A  K  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50762" stop="50370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVANEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSRKSSTINGVNIVEEASTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80693" PGL_stop="82670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80693" e_stop="81011"/>
            <exon e_start="81462" e_stop="81859"/>
            <exon e_start="82282" e_stop="82670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="0.909"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="80693" e_stop="81011" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81462" e_stop="81859" e_length="398"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81860" i_stop="82281" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="82282" e_stop="82670" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80693" stop="81011"/>
              <exon start="81462" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80715" stop="81011"/>
              <exon start="81462" stop="81859"/>
              <exon start="82282" stop="82322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80715" stop="81011"/>
              <exon start="81462" stop="81806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80740" stop="81011"/>
              <exon start="81462" stop="81826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80741" stop="81011"/>
              <exon start="81462" stop="81687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80937" stop="81011"/>
              <exon start="81462" stop="81859"/>
              <exon start="82282" stop="82568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80937" stop="81011"/>
              <exon start="81462" stop="81859"/>
              <exon start="82282" stop="82305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81481" stop="81859"/>
              <exon start="82282" stop="82577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81696" stop="81859"/>
              <exon start="82282" stop="82670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434771" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81696" stop="81859"/>
              <exon start="82282" stop="82670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81696" stop="81859"/>
              <exon start="82282" stop="82670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTCCTCTCTATTTTCTCTCTCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG : GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAG : GTACATTTACTCAAAGAGAAGTTGATCAACAGAGTAAAAGGGAAGGAAATTTTAGAATTTATTAGTCCACTTGATCATGTAGAACCTCAAAATCCTTCTATTGGAGTTGATTCAAATTTAGCAATGGTGAAGTGCAAGCAAGAAGATGCAAAAAGTGATGTTCTTGATTCGGACAGTCCGCGTTTTACTGACGGAGATTACACTTCATATTTGGAGCCTGCTGATTCTTCAAATGTATTTCAGACAGAACACTCTAATTTTTCTCGAGAAAATGACACATTATGCTTCCCAAAACTTGAAGAACATCATCATCACGATGATTTACCTGTTAATTCTTGTAATTTGGGTTTTCAAATTGAGGATCAATCTTGGTTCTCACATTATTGAGG</gDNA_template>
            <first_frame> N  L  L  S  I  F  S  L  S  L  Y  V  E  F  S  S  S  L  S  T  S  T  S  F  S  Q  Y  *  M  *  S  S  F  I  V  L  I  T  N  F  L  S  N  N  S  I  V  Q  F  F  L  F  L  I  L  L  S  T  P  N  T  K  K  I  K  F  R  G  *  K  M  E  V  A  R  V  H  E  G  S  N  N  G  F  I  L  P  N  E  I  L  P  P  T  S  N  W  I  S  N  S  S  S  I  F  H   : G  S  V  S  M  V  N  F  D  Q  D  R  V  Q  K  S  K  K  R  S  F  L  A  Q  L  D  Q  D  D  S  S  S  N  D  D  N  Y  N  Y  H  H  Q  S  E  K  K  R  R  L  L  P  K  Q  V  E  Y  L  E  K  S  F  E  V  E  N  K  L  E  P  E  R  K  V  Q  L  A  K  E  T  G  L  Q  P  R  Q  V  A  I  W  F  Q  N  R  R  A  R  C  K  T  K  Q  I  E  K  D  Y  D  V  L  K  A  S  F  D  E  L  K  T  Q  Y  D  C  L  F  K  E  N  G  S  L  R  N  E  :  V  H  L  L  K  E  K  L  I  N  R  V  K  G  K  E  I  L  E  F  I  S  P  L  D  H  V  E  P  Q  N  P  S  I  G  V  D  S  N  L  A  M  V  K  C  K  Q  E  D  A  K  S  D  V  L  D  S  D  S  P  R  F  T  D  G  D  Y  T  S  Y  L  E  P  A  D  S  S  N  V  F  Q  T  E  H  S  N  F  S  R  E  N  D  T  L  C  F  P  K  L  E  E  H  H  H  H  D  D  L  P  V  N  S  C  N  L  G  F  Q  I  E  D  Q  S  W  F  S  H  Y  *   </first_frame>
            <second_frame>  I  S  S  L  F  S  L  S  L  S  M  L  S  F  H  L  P  C  L  L  L  L  L  F  L  N  I  K  C  D  P  H  L  *  Y  S  S  Q  T  F  L  V  T  I  Q  *  S  N  F  S  Y  S  *  S  S  S  Q  L  Q  I  P  K  K  *  N  L  E  D  K  K  W  R  *  Q  E  F  M  K  V  L  T  M  A  L  Y  F  Q  M  K  F  F  L  L  L  L  I  G  Y  L  I  L  P  P  F  S  M  :  A  L  Y  R  W  *  I  S  I  K  I  E  Y  R  S  L  K  R  G  H  F  *  H  N  L  I  K  T  T  V  V  A  M  M  T  I  T  I  I  I  T  K  V  K  R  K  D  D  C  Y  Q  N  K  L  S  I  L  R  K  V  S  R  *  K  T  S  L  N  L  K  G  K  Y  N  *  L  K  K  L  D  C  S  L  D  K  L  L  F  G  F  K  I  D  E  H  D  A  K  R  N  K  L  R  R  I  M  M  S  L  K  L  A  L  M  N  *  R  L  N  M  I  V  S  S  K  R  M  E  A  *  E  M  R :   Y  I  Y  S  K  R  S  *  S  T  E  *  K  G  R  K  F  *  N  L  L  V  H  L  I  M  *  N  L  K  I  L  L  L  E  L  I  Q  I  *  Q  W  *  S  A  S  K  K  M  Q  K  V  M  F  L  I  R  T  V  R  V  L  L  T  E  I  T  L  H  I  W  S  L  L  I  L  Q  M  Y  F  R  Q  N  T  L  I  F  L  E  K  M  T  H  Y  A  S  Q  N  L  K  N  I  I  I  T  M  I  Y  L  L  I  L  V  I  W  V  F  K  L  R  I  N  L  G  S  H  I  I  E  </second_frame>
            <third_frame>   S  P  L  Y  F  L  S  L  S  L  C  *  V  F  I  F  L  V  Y  F  Y  F  F  F  S  I  L  N  V  I  L  I  Y  S  T  H  H  K  L  S  *  *  Q  F  N  S  P  I  F  P  I  L  D  P  P  L  N  S  K  Y  Q  K  N  K  I  *  R  I  K  N  G  G  S  K  S  S  *  R  F  *  Q  W  L  Y  T  S  K  *  N  S  S  S  Y  F  *  L  D  I  *  F  F  L  H  F  P  W :   L  C  I  D  G  K  F  R  S  R  S  S  T  E  V  *  K  E  V  I  F  S  T  T  *  S  R  R  Q  *  *  Q  *  *  Q  L  Q  L  S  S  P  K  *  K  E  K  T  I  V  T  K  T  S  *  V  S  *  E  K  F  R  G  R  K  Q  A  *  T  *  K  E  S  T  I  S  *  R  N  W  I  A  A  *  T  S  C  Y  L  V  S  K  S  T  S  T  M  Q  N  E  T  N  *  E  G  L  *  C  P  *  S  *  L  *  *  I  E  D  S  I  *  L  S  L  Q  R  E  W  K  L  E  K  *   : G  T  F  T  Q  R  E  V  D  Q  Q  S  K  R  E  G  N  F  R  I  Y  *  S  T  *  S  C  R  T  S  K  S  F  Y  W  S  *  F  K  F  S  N  G  E  V  Q  A  R  R  C  K  K  *  C  S  *  F  G  Q  S  A  F  Y  *  R  R  L  H  F  I  F  G  A  C  *  F  F  K  C  I  S  D  R  T  L  *  F  F  S  R  K  *  H  I  M  L  P  K  T  *  R  T  S  S  S  R  *  F  T  C  *  F  L  *  F  G  F  S  N  *  G  S  I  L  V  L  T  L  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80900" stop="81011"/>
                    <exon start="81462" stop="81859"/>
                    <exon start="82282" stop="82668"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVARVHEGSNNGFILPNEILPPTSNWISNSSSIFHGSVSMVNFDQDRVQKSKKRSFLAQLDQDDSSSNDDNYNYHHQSEKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQIEKDYDVLKASFDELKTQYDCLFKENGSLRNEVHLLKEKLINRVKGKEILEFISPLDHVEPQNPSIGVDSNLAMVKCKQEDAKSDVLDSDSPRFTDGDYTSYLEPADSSNVFQTEHSNFSRENDTLCFPKLEEHHHHDDLPVNSCNLGFQIEDQSWFSHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80693" e_stop="81011"/>
            <exon e_start="81462" e_stop="81871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="0.909"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="80693" e_stop="81011" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="81012" i_stop="81461" i_length="450"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="81462" e_stop="81871" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80693" stop="81011"/>
              <exon start="81462" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80715" stop="81011"/>
              <exon start="81462" stop="81871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80715" stop="81011"/>
              <exon start="81462" stop="81806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80740" stop="81011"/>
              <exon start="81462" stop="81826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80741" stop="81011"/>
              <exon start="81462" stop="81687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTCCTCTCTATTTTCTCTCTCTCTCTCTATGTTGAGTTTTCATCTTCCTTGTCTACTTCTACTTCTTTTTCTCAATATTAAATGTGATCCTCATTTATAGTACTCATCACAAACTTTCTTAGTAACAATTCAATAGTCCAATTTTTCCTATTCTTGATCCTCCTCTCAACTCCAAATACCAAAAAAATAAAATTTAGAGGATAAAAAATGGAGGTAGCAAGAGTTCATGAAGGTTCTAACAATGGCTTTATACTTCCAAATGAAATTCTTCCTCCTACTTCTAATTGGATATCTAATTCTTCCTCCATTTTCCATG : GCTCTGTATCGATGGTAAATTTCGATCAAGATCGAGTACAGAAGTCTAAAAAGAGGTCATTTTTAGCACAACTTGATCAAGACGACAGTAGTAGCAATGATGACAATTACAATTATCATCACCAAAGTGAAAAGAAAAGACGATTGTTACCAAAACAAGTTGAGTATCTTGAGAAAAGTTTCGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGTACAATTAGCTAAAGAAACTGGATTGCAGCCTAGACAAGTTGCTATTTGGTTTCAAAATCGACGAGCACGATGCAAAACGAAACAAATTGAGAAGGATTATGATGTCCTTAAAGCTAGCTTTGATGAATTGAAGACTCAATATGATTGTCTCTTCAAAGAGAATGGAAGCTTGAGAAATGAGGTAAATTTAGTC</gDNA_template>
            <first_frame> N  L  L  S  I  F  S  L  S  L  Y  V  E  F  S  S  S  L  S  T  S  T  S  F  S  Q  Y  *  M  *  S  S  F  I  V  L  I  T  N  F  L  S  N  N  S  I  V  Q  F  F  L  F  L  I  L  L  S  T  P  N  T  K  K  I  K  F  R  G  *  K  M  E  V  A  R  V  H  E  G  S  N  N  G  F  I  L  P  N  E  I  L  P  P  T  S  N  W  I  S  N  S  S  S  I  F  H   : G  S  V  S  M  V  N  F  D  Q  D  R  V  Q  K  S  K  K  R  S  F  L  A  Q  L  D  Q  D  D  S  S  S  N  D  D  N  Y  N  Y  H  H  Q  S  E  K  K  R  R  L  L  P  K  Q  V  E  Y  L  E  K  S  F  E  V  E  N  K  L  E  P  E  R  K  V  Q  L  A  K  E  T  G  L  Q  P  R  Q  V  A  I  W  F  Q  N  R  R  A  R  C  K  T  K  Q  I  E  K  D  Y  D  V  L  K  A  S  F  D  E  L  K  T  Q  Y  D  C  L  F  K  E  N  G  S  L  R  N  E  V  N  L  V </first_frame>
            <second_frame>  I  S  S  L  F  S  L  S  L  S  M  L  S  F  H  L  P  C  L  L  L  L  L  F  L  N  I  K  C  D  P  H  L  *  Y  S  S  Q  T  F  L  V  T  I  Q  *  S  N  F  S  Y  S  *  S  S  S  Q  L  Q  I  P  K  K  *  N  L  E  D  K  K  W  R  *  Q  E  F  M  K  V  L  T  M  A  L  Y  F  Q  M  K  F  F  L  L  L  L  I  G  Y  L  I  L  P  P  F  S  M  :  A  L  Y  R  W  *  I  S  I  K  I  E  Y  R  S  L  K  R  G  H  F  *  H  N  L  I  K  T  T  V  V  A  M  M  T  I  T  I  I  I  T  K  V  K  R  K  D  D  C  Y  Q  N  K  L  S  I  L  R  K  V  S  R  *  K  T  S  L  N  L  K  G  K  Y  N  *  L  K  K  L  D  C  S  L  D  K  L  L  F  G  F  K  I  D  E  H  D  A  K  R  N  K  L  R  R  I  M  M  S  L  K  L  A  L  M  N  *  R  L  N  M  I  V  S  S  K  R  M  E  A  *  E  M  R  *  I  *   </second_frame>
            <third_frame>   S  P  L  Y  F  L  S  L  S  L  C  *  V  F  I  F  L  V  Y  F  Y  F  F  F  S  I  L  N  V  I  L  I  Y  S  T  H  H  K  L  S  *  *  Q  F  N  S  P  I  F  P  I  L  D  P  P  L  N  S  K  Y  Q  K  N  K  I  *  R  I  K  N  G  G  S  K  S  S  *  R  F  *  Q  W  L  Y  T  S  K  *  N  S  S  S  Y  F  *  L  D  I  *  F  F  L  H  F  P  W :   L  C  I  D  G  K  F  R  S  R  S  S  T  E  V  *  K  E  V  I  F  S  T  T  *  S  R  R  Q  *  *  Q  *  *  Q  L  Q  L  S  S  P  K  *  K  E  K  T  I  V  T  K  T  S  *  V  S  *  E  K  F  R  G  R  K  Q  A  *  T  *  K  E  S  T  I  S  *  R  N  W  I  A  A  *  T  S  C  Y  L  V  S  K  S  T  S  T  M  Q  N  E  T  N  *  E  G  L  *  C  P  *  S  *  L  *  *  I  E  D  S  I  *  L  S  L  Q  R  E  W  K  L  E  K  *  G  K  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80900" stop="81011"/>
                    <exon start="81462" stop="81871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEVARVHEGSNNGFILPNEILPPTSNWISNSSSIFHGSVSMVNFDQDRVQKSKKRSFLAQLDQDDSSSNDDNYNYHHQSEKKRRLLPKQVEYLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQIEKDYDVLKASFDELKTQYDCLFKENGSLRNEVNLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="81786" PGL_stop="81481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81786" e_stop="81481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="81786" e_stop="81481" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81786" stop="81481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACATCATAATCCTTCTCAATTTGTTTCGTTTTGCATCGTGCTCGTCGATTTTGAAACCAAATAGCAACTTGTCTAGGCTGCAATCCAGTTTCTTTAGCTAATTGTACTTTCCTTTCAGGTTCAAGCTTGTTTTCTACCTCGAAACTTTTCTCAAGATACTCAACTTGTTTTGGTAACAATCGTCTTTTCTTTTCACTTTGGTGATGATAATTGTAATTGTCATCATTGCTACTACTGTCGTCTTGATCAAGTTGTGCTAAAAATGACCTCTTTTTAGACTTCTGTACTCGATCTTGATCGAAA</gDNA_template>
            <first_frame> R  T  S  *  S  F  S  I  C  F  V  L  H  R  A  R  R  F  *  N  Q  I  A  T  C  L  G  C  N  P  V  S  L  A  N  C  T  F  L  S  G  S  S  L  F  S  T  S  K  L  F  S  R  Y  S  T  C  F  G  N  N  R  L  F  F  S  L  W  *  *  *  L  *  L  S  S  L  L  L  L  S  S  *  S  S  C  A  K  N  D  L  F  L  D  F  C  T  R  S  *  S  K </first_frame>
            <second_frame>  G  H  H  N  P  S  Q  F  V  S  F  C  I  V  L  V  D  F  E  T  K  *  Q  L  V  *  A  A  I  Q  F  L  *  L  I  V  L  S  F  Q  V  Q  A  C  F  L  P  R  N  F  S  Q  D  T  Q  L  V  L  V  T  I  V  F  S  F  H  F  G  D  D  N  C  N  C  H  H  C  Y  Y  C  R  L  D  Q  V  V  L  K  M  T  S  F  *  T  S  V  L  D  L  D  R   </second_frame>
            <third_frame>   D  I  I  I  L  L  N  L  F  R  F  A  S  C  S  S  I  L  K  P  N  S  N  L  S  R  L  Q  S  S  F  F  S  *  L  Y  F  P  F  R  F  K  L  V  F  Y  L  E  T  F  L  K  I  L  N  L  F  W  *  Q  S  S  F  L  F  T  L  V  M  I  I  V  I  V  I  I  A  T  T  V  V  L  I  K  L  C  *  K  *  P  L  F  R  L  L  Y  S  I  L  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0098C07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="94498" PGL_stop="90619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93995" e_stop="93300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93995" e_stop="93300" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93995" stop="93300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93994" stop="93490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGGGTAAGTAAATACCTTACATTATACAAACACCAGCTAATATTTCTGAATAACATCCTCTATCCATATTTGCTATTAGAATCTGTTATCTAGTTTTCTCAATAAGAAATTTACATTACTTTGCGGAATGAATTACATCTGGCCTATTGACGGGGATAATTCGAGTTGATAGTAGTGATTTGATCTTTTGTGTGGTGAATTTGACAGAACATTGCCTAGTAAATCATGTCCATCAAGGTTGGTTATAGTTTTCATATGAATCTGGATCCTTAGGAAGCTACTCCCATCTCTCAACCACTTGAAACTGTGCCTTTGAGATTATCCCACAGTAATGAATCAGAACTGTTCATCATATGGGGGTTATGCATGAATTATATAGAATGAGTGAATGATATTGGTGACTCGAGGGAAAATTCTTCTTTGATTATCATTGGTAAAAGTACATTTAACTTAAAATTATGTGTATTAGTTGGGATAGCAACGATGCACGAATATA</gDNA_template>
            <first_frame> F  K  F  N  S  R  D  A  E  D  I  F  A  E  F  F  G  G  S  D  G  Y  S  R  S  T  G  G  T  V  R  I  R  K  A  A  P  V  E  N  K  L  P  C  T  L  E  E  L  Y  K  G  S  K  R  K  M  K  I  S  R  I  V  L  D  G  A  G  *  V  N  T  L  H  Y  T  N  T  S  *  Y  F  *  I  T  S  S  I  H  I  C  Y  *  N  L  L  S  S  F  L  N  K  K  F  T  L  L  C  G  M  N  Y  I  W  P  I  D  G  D  N  S  S  *  *  *  *  F  D  L  L  C  G  E  F  D  R  T  L  P  S  K  S  C  P  S  R  L  V  I  V  F  I  *  I  W  I  L  R  K  L  L  P  S  L  N  H  L  K  L  C  L  *  D  Y  P  T  V  M  N  Q  N  C  S  S  Y  G  G  Y  A  *  I  I  *  N  E  *  M  I  L  V  T  R  G  K  I  L  L  *  L  S  L  V  K  V  H  L  T  *  N  Y  V  Y  *  L  G  *  Q  R  C  T  N  I </first_frame>
            <second_frame>  L  S  S  I  R  V  M  R  K  I  F  S  R  N  F  L  V  D  R  M  G  I  V  G  V  L  V  V  L  Y  G  L  G  K  L  R  R  W  R  T  S  C  R  V  P  W  R  S  Y  T  R  A  L  R  G  K  *  R  F  Q  G  L  F  L  M  A  L  G  K  *  I  P  Y  I  I  Q  T  P  A  N  I  S  E  *  H  P  L  S  I  F  A  I  R  I  C  Y  L  V  F  S  I  R  N  L  H  Y  F  A  E  *  I  T  S  G  L  L  T  G  I  I  R  V  D  S  S  D  L  I  F  C  V  V  N  L  T  E  H  C  L  V  N  H  V  H  Q  G  W  L  *  F  S  Y  E  S  G  S  L  G  S  Y  S  H  L  S  T  T  *  N  C  A  F  E  I  I  P  Q  *  *  I  R  T  V  H  H  M  G  V  M  H  E  L  Y  R  M  S  E  *  Y  W  *  L  E  G  K  F  F  F  D  Y  H  W  *  K  Y  I  *  L  K  I  M  C  I  S  W  D  S  N  D  A  R  I   </second_frame>
            <third_frame>   *  V  Q  F  A  *  C  G  R  Y  F  R  G  I  F  W  W  I  G  W  V  *  *  E  Y  W  W  Y  C  T  D  *  E  S  C  A  G  G  E  Q  V  A  V  Y  L  G  G  V  I  Q  G  L  *  E  E  N  E  D  F  K  D  C  S  *  W  R  W  V  S  K  Y  L  T  L  Y  K  H  Q  L  I  F  L  N  N  I  L  Y  P  Y  L  L  L  E  S  V  I  *  F  S  Q  *  E  I  Y  I  T  L  R  N  E  L  H  L  A  Y  *  R  G  *  F  E  L  I  V  V  I  *  S  F  V  W  *  I  *  Q  N  I  A  *  *  I  M  S  I  K  V  G  Y  S  F  H  M  N  L  D  P  *  E  A  T  P  I  S  Q  P  L  E  T  V  P  L  R  L  S  H  S  N  E  S  E  L  F  I  I  W  G  L  C  M  N  Y  I  E  *  V  N  D  I  G  D  S  R  E  N  S  S  L  I  I  I  G  K  S  T  F  N  L  K  L  C  V  L  V  G  I  A  T  M  H  E  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93995" stop="93789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKFNSRDAEDIFAEFFGGSDGYSRSTGGTVRIRKAAPVENKLPCTLEELYKGSKRKMKISRIVLDGAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94498" e_stop="93793"/>
            <exon e_start="90687" e_stop="90619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.989"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="94498" e_stop="93793" e_length="706"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93792" i_stop="90688" i_length="3105"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="90687" e_stop="90619" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94498" stop="93793"/>
              <exon start="90687" stop="90619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCTACCATACGCATTGATTCGCCTAGACGACCGGCCAACTCACCGGAGTTTTCCCCGTCGAGTACGGGTCAACGACTTCCTTTTCTCCAGATTTAACAAACTTTCCAGAAATTTCTCGAGAACAGTCTGTTATTTATTTTTATAATATATATATACAAACACATATATTCCTGCTTCGGTTTCATCAACGATACAGAGAAAAAAAGCACAGTGAAAGAGAAGAGAAGAAGATATGAGTGTTGATTACTATAAGACACTGAAAGTGTCACGTAATGCAAGTGAAGAAGATTTGAAGAAATCGTATAAGAGATTGGCCATGAAATGGCATCCGGATAAGAATAGTGAGAATAAGAAGGAAGCTGAAGCGAAATTCAAGCAGATATCTGAGGCTTATGATGTGCTGAGTGATCCTCAGAAGCGTCAGATCTATGATATATACGGTGATGAGGCACTGAAATCTGGTCAATTCGATCCATCCTCACCTAGTGATAGAAGAGGATTTAAGTTCAATTCGCGTGATGCGGAAGATATTTTCGCGGAATTTTTTGGTGGATCGGATGGGTATAGTAGGAGTACTGGTGGTACTGTACGGATTAGGAAAGCTGCGCCGGTGGAGAACAAGTTGCCGTGTACCTTGGAGGAGTTATACAAGGGCTCTAAGAGGAAAATGAAGATTTCAAGGATTGTTCTTGATGGCGCTGG : TAAGCCCACAACTATTGAAGAGGTCTTGGCAATACACATTAAACCTGGTTGGAAGAAAGGCACAAAAAT</gDNA_template>
            <first_frame> F  L  Y  H  T  H  *  F  A  *  T  T  G  Q  L  T  G  V  F  P  V  E  Y  G  S  T  T  S  F  S  P  D  L  T  N  F  P  E  I  S  R  E  Q  S  V  I  Y  F  Y  N  I  Y  I  Q  T  H  I  F  L  L  R  F  H  Q  R  Y  R  E  K  K  H  S  E  R  E  E  K  K  I  *  V  L  I  T  I  R  H  *  K  C  H  V  M  Q  V  K  K  I  *  R  N  R  I  R  D  W  P  *  N  G  I  R  I  R  I  V  R  I  R  R  K  L  K  R  N  S  S  R  Y  L  R  L  M  M  C  *  V  I  L  R  S  V  R  S  M  I  Y  T  V  M  R  H  *  N  L  V  N  S  I  H  P  H  L  V  I  E  E  D  L  S  S  I  R  V  M  R  K  I  F  S  R  N  F  L  V  D  R  M  G  I  V  G  V  L  V  V  L  Y  G  L  G  K  L  R  R  W  R  T  S  C  R  V  P  W  R  S  Y  T  R  A  L  R  G  K  *  R  F  Q  G  L  F  L  M  A  L   : V  S  P  Q  L  L  K  R  S  W  Q  Y  T  L  N  L  V  G  R  K  A  Q  K  </first_frame>
            <second_frame>  F  S  T  I  R  I  D  S  P  R  R  P  A  N  S  P  E  F  S  P  S  S  T  G  Q  R  L  P  F  L  Q  I  *  Q  T  F  Q  K  F  L  E  N  S  L  L  F  I  F  I  I  Y  I  Y  K  H  I  Y  S  C  F  G  F  I  N  D  T  E  K  K  S  T  V  K  E  K  R  R  R  Y  E  C  *  L  L  *  D  T  E  S  V  T  *  C  K  *  R  R  F  E  E  I  V  *  E  I  G  H  E  M  A  S  G  *  E  *  *  E  *  E  G  S  *  S  E  I  Q  A  D  I  *  G  L  *  C  A  E  *  S  S  E  A  S  D  L  *  Y  I  R  *  *  G  T  E  I  W  S  I  R  S  I  L  T  *  *  *  K  R  I  *  V  Q  F  A  *  C  G  R  Y  F  R  G  I  F  W  W  I  G  W  V  *  *  E  Y  W  W  Y  C  T  D  *  E  S  C  A  G  G  E  Q  V  A  V  Y  L  G  G  V  I  Q  G  L  *  E  E  N  E  D  F  K  D  C  S  *  W  R  W  :  *  A  H  N  Y  *  R  G  L  G  N  T  H  *  T  W  L  E  E  R  H  K  N </second_frame>
            <third_frame>   S  L  P  Y  A  L  I  R  L  D  D  R  P  T  H  R  S  F  P  R  R  V  R  V  N  D  F  L  F  S  R  F  N  K  L  S  R  N  F  S  R  T  V  C  Y  L  F  L  *  Y  I  Y  T  N  T  Y  I  P  A  S  V  S  S  T  I  Q  R  K  K  A  Q  *  K  R  R  E  E  D  M  S  V  D  Y  Y  K  T  L  K  V  S  R  N  A  S  E  E  D  L  K  K  S  Y  K  R  L  A  M  K  W  H  P  D  K  N  S  E  N  K  K  E  A  E  A  K  F  K  Q  I  S  E  A  Y  D  V  L  S  D  P  Q  K  R  Q  I  Y  D  I  Y  G  D  E  A  L  K  S  G  Q  F  D  P  S  S  P  S  D  R  R  G  F  K  F  N  S  R  D  A  E  D  I  F  A  E  F  F  G  G  S  D  G  Y  S  R  S  T  G  G  T  V  R  I  R  K  A  A  P  V  E  N  K  L  P  C  T  L  E  E  L  Y  K  G  S  K  R  K  M  K  I  S  R  I  V  L  D  G  A  G :   K  P  T  T  I  E  E  V  L  A  I  H  I  K  P  G  W  K  K  G  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94280" stop="93793"/>
                    <exon start="90687" stop="90621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRREEDMSVDYYKTLKVSRNASEEDLKKSYKRLAMKWHPDKNSENKKEAEAKFKQISEAYDVLSDPQKRQIYDIYGDEALKSGQFDPSSPSDRRGFKFNSRDAEDIFAEFFGGSDGYSRSTGGTVRIRKAAPVENKLPCTLEELYKGSKRKMKISRIVLDGAGKPTTIEEVLAIHIKPGWKKGTK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94468" stop="94259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTGQLTGVFPVEYGSTTSFSPDLTNFPEISREQSVIYFYNIYIQTHIFLLRFHQRYREKKHSEREEKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="95016" PGL_stop="98258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95016" e_stop="95196"/>
            <exon e_start="96853" e_stop="96915"/>
            <exon e_start="97472" e_stop="97549"/>
            <exon e_start="97818" e_stop="98035"/>
            <exon e_start="98211" e_stop="98258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95016" e_stop="95196" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95197" i_stop="96852" i_length="1656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96853" e_stop="96915" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.973">
            <gDNA_intron_boundary i_start="96916" i_stop="97471" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97472" e_stop="97549" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97550" i_stop="97817" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97818" e_stop="98035" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.771" acc_prob="0.989">
            <gDNA_intron_boundary i_start="98036" i_stop="98210" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98211" e_stop="98258" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95016" stop="95196"/>
              <exon start="96853" stop="96915"/>
              <exon start="97472" stop="97549"/>
              <exon start="97818" stop="98035"/>
              <exon start="98211" stop="98258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATTGATGTCTGTAGTTACTAGTGTTATTACTCCAGCCATAAAAAGCAAATCTTGTTGTTTCATGAGTTTATTGCATTATCCACCATTGATGACTGCTAGCTACCGTTGTTTTCGTGCCCGAAGTAGGCTTTCGTGCTGTAATAGTCACGCTGATGATGATATGCGTGCCCTCTTTCAG : ATTCTGCCATGTGACTTACGGGACACCCTTTTGTGTGACCCCAGCCAAGATCAACTAGTAGAG : GTGATTTTAGATTTAGGCTGTTTGCCACAAGCACATTACATAAATGATTCTGGGAGGCGTTACCTTCGAGATACTGAG : GTCTCTATGGAAGAAATACAATGTGTCCTCAAGGAAATTGGACAATTTGGAGGAGATAACAGAGCTGGCATTGAGGGTACTTTGCATCGCATTTCCGCAATTAGGAATAGGAAGGGTGAAGTCATTGGTTTGACTTGCCGAGTTGGCAGGGCCAGAGGACAGATTGACATGGTGCGGGACTTGCTTGATTTTGGTGAAAGCATCTTGTTTGTTGGACG : ACCTGGTGTTGGTAAAACTACGGTTGTGCGAGAGATATCTCGTGTCTT</gDNA_template>
            <first_frame> F  I  D  V  C  S  Y  *  C  Y  Y  S  S  H  K  K  Q  I  L  L  F  H  E  F  I  A  L  S  T  I  D  D  C  *  L  P  L  F  S  C  P  K  *  A  F  V  L  *  *  S  R  *  *  *  Y  A  C  P  L  S   : D  S  A  M  *  L  T  G  H  P  F  V  *  P  Q  P  R  S  T  S  R   : G  D  F  R  F  R  L  F  A  T  S  T  L  H  K  *  F  W  E  A  L  P  S  R  Y  *   : G  L  Y  G  R  N  T  M  C  P  Q  G  N  W  T  I  W  R  R  *  Q  S  W  H  *  G  Y  F  A  S  H  F  R  N  *  E  *  E  G  *  S  H  W  F  D  L  P  S  W  Q  G  Q  R  T  D  *  H  G  A  G  L  A  *  F  W  *  K  H  L  V  C  W  T  :  T  W  C  W  *  N  Y  G  C  A  R  D  I  S  C  L </first_frame>
            <second_frame>  L  L  M  S  V  V  T  S  V  I  T  P  A  I  K  S  K  S  C  C  F  M  S  L  L  H  Y  P  P  L  M  T  A  S  Y  R  C  F  R  A  R  S  R  L  S  C  C  N  S  H  A  D  D  D  M  R  A  L  F  Q  :  I  L  P  C  D  L  R  D  T  L  L  C  D  P  S  Q  D  Q  L  V  E  :  V  I  L  D  L  G  C  L  P  Q  A  H  Y  I  N  D  S  G  R  R  Y  L  R  D  T  E  :  V  S  M  E  E  I  Q  C  V  L  K  E  I  G  Q  F  G  G  D  N  R  A  G  I  E  G  T  L  H  R  I  S  A  I  R  N  R  K  G  E  V  I  G  L  T  C  R  V  G  R  A  R  G  Q  I  D  M  V  R  D  L  L  D  F  G  E  S  I  L  F  V  G  R :   P  G  V  G  K  T  T  V  V  R  E  I  S  R  V   </second_frame>
            <third_frame>   Y  *  C  L  *  L  L  V  L  L  L  Q  P  *  K  A  N  L  V  V  S  *  V  Y  C  I  I  H  H  *  *  L  L  A  T  V  V  F  V  P  E  V  G  F  R  A  V  I  V  T  L  M  M  I  C  V  P  S  F  R :   F  C  H  V  T  Y  G  T  P  F  C  V  T  P  A  K  I  N  *  *  R :   *  F  *  I  *  A  V  C  H  K  H  I  T  *  M  I  L  G  G  V  T  F  E  I  L  R :   S  L  W  K  K  Y  N  V  S  S  R  K  L  D  N  L  E  E  I  T  E  L  A  L  R  V  L  C  I  A  F  P  Q  L  G  I  G  R  V  K  S  L  V  *  L  A  E  L  A  G  P  E  D  R  L  T  W  C  G  T  C  L  I  L  V  K  A  S  C  L  L  D   : D  L  V  L  V  K  L  R  L  C  E  R  Y  L  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95017" stop="95196"/>
                    <exon start="96853" stop="96915"/>
                    <exon start="97472" stop="97549"/>
                    <exon start="97818" stop="98035"/>
                    <exon start="98211" stop="98256"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMSVVTSVITPAIKSKSCCFMSLLHYPPLMTASYRCFRARSRLSCCNSHADDDMRALFQILPCDLRDTLLCDPSQDQLVEVILDLGCLPQAHYINDSGRRYLRDTEVSMEEIQCVLKEIGQFGGDNRAGIEGTLHRISAIRNRKGEVIGLTCRVGRARGQIDMVRDLLDFGESILFVGRPGVGKTTVVREISRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="101098" PGL_stop="102419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101098" e_stop="101182"/>
            <exon e_start="101978" e_stop="102419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101098" e_stop="101182" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.952">
            <gDNA_intron_boundary i_start="101183" i_stop="101977" i_length="795"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="101978" e_stop="102419" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101098" stop="101182"/>
              <exon start="101978" stop="102419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101102" stop="101182"/>
              <exon start="101978" stop="102407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAGAACTCCGCAATTACAGGTTGTGATTGAGAGATGGAGAACAAAAGCCTAAATACAATTAACTTCTGCTACTGCTCTACTG : GAGAAAAATGTATGTGTACATTTGAAAACTTCATATGGAGCTTGCAATGTGATGGAAATGGATGTTGAAAATCTTTGCGGAGGTTGAAATTCATCTTTTCACAAAGTTGGCCTTCTAACAAGCATAGTAAGTACTACGTTTTCACTGATTTTCATACTTTGGGTAAGTGAGATGAAAACTCTCTTCTTCCTTTCTTTGTCATTTCACTTAATTTTGTTATATAAGTTGATCATCTACATTTATCTTTCTGTCATTAAATTATTTATTTCGTTTACTTTGTAAAAACTTAGTTTTTCATGTTTCATATCATACCTAGCTAGCTACAATCTTTGACAAAAAAAAATATTTAGATAATTCAGATCTAAGTATTATGTTGATTACCTAATTTTTAAGTGCATTCACCTAAGTACCATCTCAAAGTGTACAAAAAAAAAACATCCAC</gDNA_template>
            <first_frame> E  E  N  S  A  I  T  G  C  D  *  E  M  E  N  K  S  L  N  T  I  N  F  C  Y  C  S  T   : G  E  K  C  M  C  T  F  E  N  F  I  W  S  L  Q  C  D  G  N  G  C  *  K  S  L  R  R  L  K  F  I  F  S  Q  S  W  P  S  N  K  H  S  K  Y  Y  V  F  T  D  F  H  T  L  G  K  *  D  E  N  S  L  L  P  F  F  V  I  S  L  N  F  V  I  *  V  D  H  L  H  L  S  F  C  H  *  I  I  Y  F  V  Y  F  V  K  T  *  F  F  M  F  H  I  I  P  S  *  L  Q  S  L  T  K  K  N  I  *  I  I  Q  I  *  V  L  C  *  L  P  N  F  *  V  H  S  P  K  Y  H  L  K  V  Y  K  K  K  T  S   </first_frame>
            <second_frame>  R  R  T  P  Q  L  Q  V  V  I  E  R  W  R  T  K  A  *  I  Q  L  T  S  A  T  A  L  L  :  E  K  N  V  C  V  H  L  K  T  S  Y  G  A  C  N  V  M  E  M  D  V  E  N  L  C  G  G  *  N  S  S  F  H  K  V  G  L  L  T  S  I  V  S  T  T  F  S  L  I  F  I  L  W  V  S  E  M  K  T  L  F  F  L  S  L  S  F  H  L  I  L  L  Y  K  L  I  I  Y  I  Y  L  S  V  I  K  L  F  I  S  F  T  L  *  K  L  S  F  S  C  F  I  S  Y  L  A  S  Y  N  L  *  Q  K  K  I  F  R  *  F  R  S  K  Y  Y  V  D  Y  L  I  F  K  C  I  H  L  S  T  I  S  K  C  T  K  K  K  H  P  </second_frame>
            <third_frame>   G  E  L  R  N  Y  R  L  *  L  R  D  G  E  Q  K  P  K  Y  N  *  L  L  L  L  L  Y  W :   R  K  M  Y  V  Y  I  *  K  L  H  M  E  L  A  M  *  W  K  W  M  L  K  I  F  A  E  V  E  I  H  L  F  T  K  L  A  F  *  Q  A  *  *  V  L  R  F  H  *  F  S  Y  F  G  *  V  R  *  K  L  S  S  S  F  L  C  H  F  T  *  F  C  Y  I  S  *  S  S  T  F  I  F  L  S  L  N  Y  L  F  R  L  L  C  K  N  L  V  F  H  V  S  Y  H  T  *  L  A  T  I  F  D  K  K  K  Y  L  D  N  S  D  L  S  I  M  L  I  T  *  F  L  S  A  F  T  *  V  P  S  Q  S  V  Q  K  K  N  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102065" stop="102259"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSFHKVGLLTSIVSTTFSLIFILWVSEMKTLFFLSLSFHLILLYKLIIYIYLSVIKLFISFTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="103110" PGL_stop="103386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103110" e_stop="103386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103110" e_stop="103386" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103110" stop="103386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103110" stop="103386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103111" stop="103386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCATCATCCACAGGTACATGATCAAAACCAGCATGTTTTGAGGGCTTTGAGAAACCAAAAATGTTTCGAAAACGGTGAAGTTGAAGGAACTACTGACCTACATGACTAGAAGATACATACTGAGTATCCCAACAAAAAGGTAGCAAAAGAAATTCTATGATCATCCAAACATTGTAATGGATCAACAGATACGTTCTTGTGAGTTCAATTGAATCCATTTGGTCTCTCTTTTTATGTTACAAAATATATAAGTATCAGATATTAGTACAAGTTA</gDNA_template>
            <first_frame> F  A  S  S  T  G  T  *  S  K  P  A  C  F  E  G  F  E  K  P  K  M  F  R  K  R  *  S  *  R  N  Y  *  P  T  *  L  E  D  T  Y  *  V  S  Q  Q  K  G  S  K  R  N  S  M  I  I  Q  T  L  *  W  I  N  R  Y  V  L  V  S  S  I  E  S  I  W  S  L  F  L  C  Y  K  I  Y  K  Y  Q  I  L  V  Q  V  </first_frame>
            <second_frame>  L  H  H  P  Q  V  H  D  Q  N  Q  H  V  L  R  A  L  R  N  Q  K  C  F  E  N  G  E  V  E  G  T  T  D  L  H  D  *  K  I  H  T  E  Y  P  N  K  K  V  A  K  E  I  L  *  S  S  K  H  C  N  G  S  T  D  T  F  L  *  V  Q  L  N  P  F  G  L  S  F  Y  V  T  K  Y  I  S  I  R  Y  *  Y  K  L </second_frame>
            <third_frame>   C  I  I  H  R  Y  M  I  K  T  S  M  F  *  G  L  *  E  T  K  N  V  S  K  T  V  K  L  K  E  L  L  T  Y  M  T  R  R  Y  I  L  S  I  P  T  K  R  *  Q  K  K  F  Y  D  H  P  N  I  V  M  D  Q  Q  I  R  S  C  E  F  N  *  I  H  L  V  S  L  F  M  L  Q  N  I  *  V  S  D  I  S  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0098C07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="118189" PGL_stop="112772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118189" e_stop="117806"/>
            <exon e_start="117084" e_stop="117001"/>
            <exon e_start="116906" e_stop="116565"/>
            <exon e_start="115022" e_stop="114887"/>
            <exon e_start="114623" e_stop="114461"/>
            <exon e_start="114139" e_stop="114011"/>
            <exon e_start="113673" e_stop="113479"/>
            <exon e_start="113307" e_stop="113185"/>
            <exon e_start="113108" e_stop="112772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.968" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.924" e_score="0.984"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="118189" e_stop="117806" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.994">
            <gDNA_intron_boundary i_start="117805" i_stop="117085" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117084" e_stop="117001" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.966">
            <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="116906" e_stop="116565" e_length="342"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.924">
            <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115022" e_stop="114887" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114623" e_stop="114461" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114139" e_stop="114011" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.900">
            <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113673" e_stop="113479" e_length="195"/>
          </exon>
          <intron i_serial="7" don_prob="0.958" acc_prob="0.838">
            <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="113307" e_stop="113185" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="113108" e_stop="112772" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118189" stop="117806"/>
              <exon start="117084" stop="117001"/>
              <exon start="116906" stop="116664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117960" stop="117806"/>
              <exon start="117084" stop="117001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117872" stop="117806"/>
              <exon start="117084" stop="117001"/>
              <exon start="116906" stop="116585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116879" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116808" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116658" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116600" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114616" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114581" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411144" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254867" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113658" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113650" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251583" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTCTTCTCTGAAAATCATGTAACATAATTCCAAGAATATATCCTCTATTTTGTTTTTTTGAGATAATTAATGGCTTCTCCACCTCTTCAAGCTTCAAAATTCCTCAAAAATCAATAGATTTTTCTCTCTCTAAAAAAAAATGATATAGATTTTTTTTTGTTGTTGTTGTTGATATGATATAGTAGTTGTTGAGAAGCATATGATTCTGCTGAAATGGGAGCATGTGTATCGCGTCCAGATAGTTGTGTTGGAGGTAAATTGAAAGGTTCAAATAAGTTTAGGAAAAAAAGGGGGGGAAGAAGAAGAAGGAAGAAATCTAACTCACTTCATAAAATTGATGAGGCGTTTCCTTTGGATAACTATAATCCAACATTTCAGG : GACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG : ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC : TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG : GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG : GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA : AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG : GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG : GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</gDNA_template>
            <first_frame> F  S  S  S  L  K  I  M  *  H  N  S  K  N  I  S  S  I  L  F  F  *  D  N  *  W  L  L  H  L  F  K  L  Q  N  S  S  K  I  N  R  F  F  S  L  *  K  K  M  I  *  I  F  F  C  C  C  C  *  Y  D  I  V  V  V  E  K  H  M  I  L  L  K  W  E  H  V  Y  R  V  Q  I  V  V  L  E  V  N  *  K  V  Q  I  S  L  G  K  K  G  G  E  E  E  E  G  R  N  L  T  H  F  I  K  L  M  R  R  F  L  W  I  T  I  I  Q  H  F  R  :  D  G  L  R  R  H  G  L  I  L  L  Q  Y  L  N  L  I  A  V  M  K  I  S  R  V  F  L  M  :  M  Y  F  L  S  T  A  L  I  V  G  G  L  V  *  L  R  S  K  I  L  T  M  G  M  L  I  *  T  P  M  D  L  T  V  R  Y  G  L  F  S  L  M  R  S  R  P  R  K  I  *  V  V  A  G  R  M  V  C  R  R  T  V  E  F  F  Q  T  T  V  C  P  V  L  P  P  L  L  C  L  L  R  R  D  L  L  A  L  V  L  Q  V  Q  G  R  K  R  T  *  S  F  P  S  N  G  K  M  E  I  L  V  P  L  Y  :  F  H  L  K  P  C  F  K  G  P  *  L  V  A  K  Y  Q  F  A  R  W  R  I  N  C  L  I  V  G  P  I  L  N  Q  I  P  S  G  S  G  E  E  T  I  S   : G  T  K  R  K  S  L  R  Q  I  M  L  H  I  I  L  L  A  L  T  Y  F  Y  L  K  E  K  L  I  T  L  L  N  L  W  N  F  L  S  L  N  T  L  G  H  F  H  P  F  L  *  *  T  F  R :   C  H  Y  I  L  P  Q  F  F  R  V  K  L  T  V  K  E  *  V  L  S  C  T  L  S  F  P  K  V  M  Q  K  N  F  L  L  I  F  R  R  T  S  E :   E  *  W  M  M  K  W  K  K  *  R  L  F  Q  W  M  V  L  F  R  L  G  K  G  *  R  Y  *  V  V  *  Q  I  W  R  T  F  G  *  V  Q  Q  R  G  S  *  C  R  H  T  M  K  N  L  F  F  H  V  L  N  M  S  S  I  R :   E  K  I  I  L  R  L  I  L  I  C  T  D  S  V  T  S  L  E  R  V  A  K  H  S  *  I  G  *  S  Y  A  P  W  M  *  A  S  Q  F  R :   V  T  K  L  K  N  C  R  S  R  S  Y  V  V  Y  D  *  M  K  S  T  M  *  I  I  S  N  S  G  L  I  M  K  P  L  E  *  V  H  *  Q  C  I  P  P  D  M  A  N  K  *  R  N  Y  C  *  L  V  V  S  L  P  F  T  S  T  V  K  S  L  R  S  K  W  L  I  E  R  V  V  D  I  *  I  Y  G  Q  G  *  E  N  S  R  V  V  F  F  V  S  M  F  H  Q  T  A  V  D  L  F  L  F  W </first_frame>
            <second_frame>  F  L  L  L  *  K  S  C  N  I  I  P  R  I  Y  P  L  F  C  F  F  E  I  I  N  G  F  S  T  S  S  S  F  K  I  P  Q  K  S  I  D  F  S  L  S  K  K  K  *  Y  R  F  F  F  V  V  V  V  D  M  I  *  *  L  L  R  S  I  *  F  C  *  N  G  S  M  C  I  A  S  R  *  L  C  W  R  *  I  E  R  F  K  *  V  *  E  K  K  G  G  K  K  K  K  E  E  I  *  L  T  S  *  N  *  *  G  V  S  F  G  *  L  *  S  N  I  S  G :   T  D  *  G  G  M  V  *  F  C  C  N  I  *  I  *  L  Q  *  *  R  F  P  E  C  S  *  * :   C  T  F  C  Q  Q  L  *  L  W  A  D  *  C  S  F  D  Q  R  Y  *  Q  W  G  C  *  F  K  P  R  W  T  S  Q  *  G  T  A  C  F  P  *  *  D  L  V  L  G  K  Y  R  *  W  Q  G  G  W  F  V  G  E  L  W  N  S  F  K  Q  L  S  A  P  S  Y  L  H  C  C  A  C  *  E  E  I  S  *  L  *  S  S  K  F  K  E  E  S  G  P  K  A  S  L  Q  M  E  R  W  K  S  L  C  H  S  T :   F  I  *  N  P  A  S  K  A  H  S  W  *  P  S  T  S  L  P  V  G  E  *  I  A  *  *  L  V  L  Y  *  T  K  Y  L  Q  G  P  G  R  K  L  F  Q  :  G  Q  K  E  R  V  C  G  K  *  C  C  I  L  S  F  W  R  *  R  I  F  I  S  K  K  N  *  S  H  C  S  T  C  G  T  S  C  H  *  T  L  W  D  T  S  T  H  S  C  S  E  H  S   : G  A  I  I  S  Y  R  N  F  S  G  *  N  *  R  *  R  N  E  F  C  L  V  L  *  A  F  R  K  L  C  K  R  T  S  F  L  F  S  G  E  H  Q   : K  S  N  G  *  *  S  G  K  S  E  G  F  S  N  G  W  Y  C  S  V  *  G  K  V  K  D  I  R  S  C  S  K  Y  G  G  P  S  V  K  C  S  R  E  E  A  D  A  G  I  Q  *  K  T  C  S  F  T  S  S  T  *  V  L  *   : G  R  K  L  F  *  D  *  Y  *  Y  A  Q  I  Q  L  H  L  *  K  G  L  R  N  I  P  R  *  A  K  A  M  L  L  G  C  R  P  H  N  S   : G  *  Q  N  *  R  I  A  G  A  D  L  M  L  Y  T  I  K  *  N  R  L  C  E  L  S  A  T  R  G  *  *  *  N  P  L  N  R  C  T  S  S  V  F  H  R  I  W  Q  I  S  E  E  I  I  V  S  *  L  C  P  S  L  L  P  Q  L  S  N  L  *  E  A  N  G  L  S  R  E  *  *  I  F  E  S  M  D  K  D  E  K  I  V  E  W  C  S  L  F  Q  C  F  I  K  P  Q  S  I  C  F  Y  F   </second_frame>
            <third_frame>   F  F  F  S  E  N  H  V  T  *  F  Q  E  Y  I  L  Y  F  V  F  L  R  *  L  M  A  S  P  P  L  Q  A  S  K  F  L  K  N  Q  *  I  F  L  S  L  K  K  N  D  I  D  F  F  L  L  L  L  L  I  *  Y  S  S  C  *  E  A  Y  D  S  A  E  M  G  A  C  V  S  R  P  D  S  C  V  G  G  K  L  K  G  S  N  K  F  R  K  K  R  G  G  R  R  R  R  K  K  S  N  S  L  H  K  I  D  E  A  F  P  L  D  N  Y  N  P  T  F  Q   : G  R  I  E  E  A  W  F  D  S  A  A  I  F  E  S  D  C  S  D  E  D  F  Q  S  V  P  D   : D  V  L  S  V  N  S  F  D  C  G  R  T  S  V  A  S  I  K  D  T  N  N  G  D  V  N  L  N  P  D  G  P  H  S  E  V  R  P  V  F  L  D  E  I  S  S  S  E  N  I  G  S  G  R  E  D  G  L  S  E  N  C  G  I  L  S  N  N  C  L  P  R  L  T  S  T  V  V  P  V  E  K  R  S  L  S  S  S  P  P  S  S  R  K  K  A  D  L  K  L  P  F  K  W  K  D  G  N  P  C  A  T  L   : L  S  S  K  T  L  L  Q  R  P  I  A  G  S  Q  V  P  V  C  P  L  E  N  K  L  P  D  S  W  S  Y  I  E  P  N  T  F  R  V  R  G  G  N  Y  F  R :   D  K  K  K  E  F  A  A  N  N  A  A  Y  Y  P  F  G  V  D  V  F  L  S  Q  R  K  I  D  H  I  A  Q  L  V  E  L  P  V  I  E  H  S  G  T  L  P  P  I  L  V  V  N  I  Q  :  V  P  L  Y  P  T  A  I  F  Q  G  E  T  D  G  K  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  S  Y  F  Q  E  N  I  R  :  R  V  M  D  D  E  V  E  K  V  K  A  F  P  M  D  G  T  V  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  D  L  R  L  S  A  A  E  R  K  L  M  Q  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  :  G  E  N  Y  F  E  I  D  I  D  M  H  R  F  S  Y  I  S  R  K  G  C  E  T  F  L  D  R  L  K  L  C  S  L  D  V  G  L  T  I  Q  :  G  N  K  I  E  E  L  P  E  Q  I  L  C  C  I  R  L  N  E  I  D  Y  V  N  Y  Q  Q  L  G  A  N  N  E  T  P  *  I  G  A  L  A  V  Y  S  T  G  Y  G  K  *  V  K  K  L  L  L  A  S  C  V  P  P  F  Y  L  N  C  Q  I  S  E  K  Q  M  A  Y  R  E  S  S  R  Y  L  N  L  W  T  R  M  R  K  *  S  S  G  V  L  C  F  N  V  S  S  N  R  S  R  S  V  F  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117992" stop="117806"/>
                    <exon start="117084" stop="117001"/>
                    <exon start="116906" stop="116565"/>
                    <exon start="115022" stop="114887"/>
                    <exon start="114623" stop="114461"/>
                    <exon start="114139" stop="114011"/>
                    <exon start="113673" stop="113479"/>
                    <exon start="113307" stop="113185"/>
                    <exon start="113108" stop="113001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAYDSAEMGACVSRPDSCVGGKLKGSNKFRKKRGGRRRRKKSNSLHKIDEAFPLDNYNPTFQGRIEEAWFDSAAIFESDCSDEDFQSVPDDVLSVNSFDCGRTSVASIKDTNNGDVNLNPDGPHSEVRPVFLDEISSSENIGSGREDGLSENCGILSNNCLPRLTSTVVPVEKRSLSSSPPSSRKKADLKLPFKWKDGNPCATLLSSKTLLQRPIAGSQVPVCPLENKLPDSWSYIEPNTFRVRGGNYFRDKKKEFAANNAAYYPFGVDVFLSQRKIDHIAQLVELPVIEHSGTLPPILVVNIQVPLYPTAIFQGETDGKGMSFVLYFKLSESYAKELPSYFQENIRRVMDDEVEKVKAFPMDGTVPFRERLKILGRVANMEDLRLSAAERKLMQAYNEKPVLSRPQHEFYKGENYFEIDIDMHRFSYISRKGCETFLDRLKLCSLDVGLTIQGNKIEELPEQILCCIRLNEIDYVNYQQLGANNETP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117367" e_stop="117001"/>
            <exon e_start="116906" e_stop="116565"/>
            <exon e_start="115022" e_stop="114887"/>
            <exon e_start="114623" e_stop="114461"/>
            <exon e_start="114139" e_stop="114011"/>
            <exon e_start="113673" e_stop="113479"/>
            <exon e_start="113307" e_stop="113185"/>
            <exon e_start="113108" e_stop="112772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.966" e_score="0.954"/>
          <exon-intron don_prob="0.909" acc_prob="0.924" e_score="0.994"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="117367" e_stop="117001" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.966">
            <gDNA_intron_boundary i_start="117000" i_stop="116907" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="116906" e_stop="116565" e_length="342"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.924">
            <gDNA_intron_boundary i_start="116564" i_stop="115023" i_length="1542"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115022" e_stop="114887" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114886" i_stop="114624" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114623" e_stop="114461" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114460" i_stop="114140" i_length="321"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114139" e_stop="114011" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.900">
            <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113673" e_stop="113479" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.958" acc_prob="0.838">
            <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113307" e_stop="113185" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="113108" e_stop="112772" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117367" stop="117001"/>
              <exon start="116906" stop="116780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117085" stop="117001"/>
              <exon start="116906" stop="116565"/>
              <exon start="115022" stop="115004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116879" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116808" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116730" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116658" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116600" stop="116565"/>
              <exon start="115022" stop="114887"/>
              <exon start="114623" stop="114461"/>
              <exon start="114139" stop="114064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114616" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114581" stop="114461"/>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411144" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254867" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113658" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113650" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251583" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCGCTGCATACAATTTGCCTTGATAGTTTCTCATGTTCTTGTGATGTCGTTATCTTTTCCTAACTCCTGTTAAATGCCTTCAGCAAGTGGCAAGTTAAAGTGAGATTATATGTTTCGTTGTTCGTTAGGATATAAGTTTGTTTGCAACGTTACATCTATTATTCATTGGAAAGGATCTTGTATAGTTTAAGTTTTCATGTTTTTATTCGAAAGGTAAATAGCAGATAAAATCATCAGAAATAACCTTTGGAAATGTTTAATGTTTGTCATGGAAATCGCAGGACGGATTGAGGAGGCATGGTTTGATTCTGCTGCAATATTTGAATCTGATTGCAGTGATGAAGATTTCCAGAGTGTTCCTGATG : ATGTACTTTCTGTCAACAGCTTTGATTGTGGGCGGACTAGTGTAGCTTCGATCAAAGATACTAACAATGGGGATGTTAATTTAAACCCCGATGGACCTCACAGTGAGGTACGGCCTGTTTTCCTTGATGAGATCTCGTCCTCGGAAAATATAGGTAGTGGCAGGGAGGATGGTTTGTCGGAGAACTGTGGAATTCTTTCAAACAACTGTCTGCCCCGTCTTACCTCCACTGTTGTGCCTGTTGAGAAGAGATCTCTTAGCTCTAGTCCTCCAAGTTCAAGGAAGAAAGCGGACCTAAAGCTTCCCTTCAAATGGAAAGATGGAAATCCTTGTGCCACTCTAC : TTTCATCTAAAACCCTGCTTCAAAGGCCCATAGCTGGTAGCCAAGTACCAGTTTGCCCGTTGGAGAATAAATTGCCTGATAGTTGGTCCTATATTGAACCAAATACCTTCAGGGTCCGGGGAGGAAACTATTTCAG : GGACAAAAAGAAAGAGTTTGCGGCAAATAATGCTGCATATTATCCTTTTGGCGTTGACGTATTTTTATCTCAAAGAAAAATTGATCACATTGCTCAACTTGTGGAACTTCCTGTCATTGAACACTCTGGGACACTTCCACCCATTCTTGTAGTGAACATTCAG : GTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA : AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG : GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG : GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</gDNA_template>
            <first_frame> F  R  C  I  Q  F  A  L  I  V  S  H  V  L  V  M  S  L  S  F  P  N  S  C  *  M  P  S  A  S  G  K  L  K  *  D  Y  M  F  R  C  S  L  G  Y  K  F  V  C  N  V  T  S  I  I  H  W  K  G  S  C  I  V  *  V  F  M  F  L  F  E  R  *  I  A  D  K  I  I  R  N  N  L  W  K  C  L  M  F  V  M  E  I  A  G  R  I  E  E  A  W  F  D  S  A  A  I  F  E  S  D  C  S  D  E  D  F  Q  S  V  P  D   : D  V  L  S  V  N  S  F  D  C  G  R  T  S  V  A  S  I  K  D  T  N  N  G  D  V  N  L  N  P  D  G  P  H  S  E  V  R  P  V  F  L  D  E  I  S  S  S  E  N  I  G  S  G  R  E  D  G  L  S  E  N  C  G  I  L  S  N  N  C  L  P  R  L  T  S  T  V  V  P  V  E  K  R  S  L  S  S  S  P  P  S  S  R  K  K  A  D  L  K  L  P  F  K  W  K  D  G  N  P  C  A  T  L   : L  S  S  K  T  L  L  Q  R  P  I  A  G  S  Q  V  P  V  C  P  L  E  N  K  L  P  D  S  W  S  Y  I  E  P  N  T  F  R  V  R  G  G  N  Y  F  R :   D  K  K  K  E  F  A  A  N  N  A  A  Y  Y  P  F  G  V  D  V  F  L  S  Q  R  K  I  D  H  I  A  Q  L  V  E  L  P  V  I  E  H  S  G  T  L  P  P  I  L  V  V  N  I  Q  :  V  P  L  Y  P  T  A  I  F  Q  G  E  T  D  G  K  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  S  Y  F  Q  E  N  I  R  :  R  V  M  D  D  E  V  E  K  V  K  A  F  P  M  D  G  T  V  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  D  L  R  L  S  A  A  E  R  K  L  M  Q  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  :  G  E  N  Y  F  E  I  D  I  D  M  H  R  F  S  Y  I  S  R  K  G  C  E  T  F  L  D  R  L  K  L  C  S  L  D  V  G  L  T  I  Q  :  G  N  K  I  E  E  L  P  E  Q  I  L  C  C  I  R  L  N  E  I  D  Y  V  N  Y  Q  Q  L  G  A  N  N  E  T  P  *  I  G  A  L  A  V  Y  S  T  G  Y  G  K  *  V  K  K  L  L  L  A  S  C  V  P  P  F  Y  L  N  C  Q  I  S  E  K  Q  M  A  Y  R  E  S  S  R  Y  L  N  L  W  T  R  M  R  K  *  S  S  G  V  L  C  F  N  V  S  S  N  R  S  R  S  V  F  I  L  </first_frame>
            <second_frame>  S  A  A  Y  N  L  P  *  *  F  L  M  F  L  *  C  R  Y  L  F  L  T  P  V  K  C  L  Q  Q  V  A  S  *  S  E  I  I  C  F  V  V  R  *  D  I  S  L  F  A  T  L  H  L  L  F  I  G  K  D  L  V  *  F  K  F  S  C  F  Y  S  K  G  K  *  Q  I  K  S  S  E  I  T  F  G  N  V  *  C  L  S  W  K  S  Q  D  G  L  R  R  H  G  L  I  L  L  Q  Y  L  N  L  I  A  V  M  K  I  S  R  V  F  L  M  :  M  Y  F  L  S  T  A  L  I  V  G  G  L  V  *  L  R  S  K  I  L  T  M  G  M  L  I  *  T  P  M  D  L  T  V  R  Y  G  L  F  S  L  M  R  S  R  P  R  K  I  *  V  V  A  G  R  M  V  C  R  R  T  V  E  F  F  Q  T  T  V  C  P  V  L  P  P  L  L  C  L  L  R  R  D  L  L  A  L  V  L  Q  V  Q  G  R  K  R  T  *  S  F  P  S  N  G  K  M  E  I  L  V  P  L  Y  :  F  H  L  K  P  C  F  K  G  P  *  L  V  A  K  Y  Q  F  A  R  W  R  I  N  C  L  I  V  G  P  I  L  N  Q  I  P  S  G  S  G  E  E  T  I  S   : G  T  K  R  K  S  L  R  Q  I  M  L  H  I  I  L  L  A  L  T  Y  F  Y  L  K  E  K  L  I  T  L  L  N  L  W  N  F  L  S  L  N  T  L  G  H  F  H  P  F  L  *  *  T  F  R :   C  H  Y  I  L  P  Q  F  F  R  V  K  L  T  V  K  E  *  V  L  S  C  T  L  S  F  P  K  V  M  Q  K  N  F  L  L  I  F  R  R  T  S  E :   E  *  W  M  M  K  W  K  K  *  R  L  F  Q  W  M  V  L  F  R  L  G  K  G  *  R  Y  *  V  V  *  Q  I  W  R  T  F  G  *  V  Q  Q  R  G  S  *  C  R  H  T  M  K  N  L  F  F  H  V  L  N  M  S  S  I  R :   E  K  I  I  L  R  L  I  L  I  C  T  D  S  V  T  S  L  E  R  V  A  K  H  S  *  I  G  *  S  Y  A  P  W  M  *  A  S  Q  F  R :   V  T  K  L  K  N  C  R  S  R  S  Y  V  V  Y  D  *  M  K  S  T  M  *  I  I  S  N  S  G  L  I  M  K  P  L  E  *  V  H  *  Q  C  I  P  P  D  M  A  N  K  *  R  N  Y  C  *  L  V  V  S  L  P  F  T  S  T  V  K  S  L  R  S  K  W  L  I  E  R  V  V  D  I  *  I  Y  G  Q  G  *  E  N  S  R  V  V  F  F  V  S  M  F  H  Q  T  A  V  D  L  F  L  F  W </second_frame>
            <third_frame>   P  L  H  T  I  C  L  D  S  F  S  C  S  C  D  V  V  I  F  S  *  L  L  L  N  A  F  S  K  W  Q  V  K  V  R  L  Y  V  S  L  F  V  R  I  *  V  C  L  Q  R  Y  I  Y  Y  S  L  E  R  I  L  Y  S  L  S  F  H  V  F  I  R  K  V  N  S  R  *  N  H  Q  K  *  P  L  E  M  F  N  V  C  H  G  N  R  R  T  D  *  G  G  M  V  *  F  C  C  N  I  *  I  *  L  Q  *  *  R  F  P  E  C  S  *  * :   C  T  F  C  Q  Q  L  *  L  W  A  D  *  C  S  F  D  Q  R  Y  *  Q  W  G  C  *  F  K  P  R  W  T  S  Q  *  G  T  A  C  F  P  *  *  D  L  V  L  G  K  Y  R  *  W  Q  G  G  W  F  V  G  E  L  W  N  S  F  K  Q  L  S  A  P  S  Y  L  H  C  C  A  C  *  E  E  I  S  *  L  *  S  S  K  F  K  E  E  S  G  P  K  A  S  L  Q  M  E  R  W  K  S  L  C  H  S  T :   F  I  *  N  P  A  S  K  A  H  S  W  *  P  S  T  S  L  P  V  G  E  *  I  A  *  *  L  V  L  Y  *  T  K  Y  L  Q  G  P  G  R  K  L  F  Q  :  G  Q  K  E  R  V  C  G  K  *  C  C  I  L  S  F  W  R  *  R  I  F  I  S  K  K  N  *  S  H  C  S  T  C  G  T  S  C  H  *  T  L  W  D  T  S  T  H  S  C  S  E  H  S   : G  A  I  I  S  Y  R  N  F  S  G  *  N  *  R  *  R  N  E  F  C  L  V  L  *  A  F  R  K  L  C  K  R  T  S  F  L  F  S  G  E  H  Q   : K  S  N  G  *  *  S  G  K  S  E  G  F  S  N  G  W  Y  C  S  V  *  G  K  V  K  D  I  R  S  C  S  K  Y  G  G  P  S  V  K  C  S  R  E  E  A  D  A  G  I  Q  *  K  T  C  S  F  T  S  S  T  *  V  L  *   : G  R  K  L  F  *  D  *  Y  *  Y  A  Q  I  Q  L  H  L  *  K  G  L  R  N  I  P  R  *  A  K  A  M  L  L  G  C  R  P  H  N  S   : G  *  Q  N  *  R  I  A  G  A  D  L  M  L  Y  T  I  K  *  N  R  L  C  E  L  S  A  T  R  G  *  *  *  N  P  L  N  R  C  T  S  S  V  F  H  R  I  W  Q  I  S  E  E  I  I  V  S  *  L  C  P  S  L  L  P  Q  L  S  N  L  *  E  A  N  G  L  S  R  E  *  *  I  F  E  S  M  D  K  D  E  K  I  V  E  W  C  S  L  F  Q  C  F  I  K  P  Q  S  I  C  F  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117148" stop="117001"/>
                    <exon start="116906" stop="116565"/>
                    <exon start="115022" stop="114887"/>
                    <exon start="114623" stop="114461"/>
                    <exon start="114139" stop="114011"/>
                    <exon start="113673" stop="113479"/>
                    <exon start="113307" stop="113185"/>
                    <exon start="113108" stop="113001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IADKIIRNNLWKCLMFVMEIAGRIEEAWFDSAAIFESDCSDEDFQSVPDDVLSVNSFDCGRTSVASIKDTNNGDVNLNPDGPHSEVRPVFLDEISSSENIGSGREDGLSENCGILSNNCLPRLTSTVVPVEKRSLSSSPPSSRKKADLKLPFKWKDGNPCATLLSSKTLLQRPIAGSQVPVCPLENKLPDSWSYIEPNTFRVRGGNYFRDKKKEFAANNAAYYPFGVDVFLSQRKIDHIAQLVELPVIEHSGTLPPILVVNIQVPLYPTAIFQGETDGKGMSFVLYFKLSESYAKELPSYFQENIRRVMDDEVEKVKAFPMDGTVPFRERLKILGRVANMEDLRLSAAERKLMQAYNEKPVLSRPQHEFYKGENYFEIDIDMHRFSYISRKGCETFLDRLKLCSLDVGLTIQGNKIEELPEQILCCIRLNEIDYVNYQQLGANNETP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114378" e_stop="114011"/>
            <exon e_start="113673" e_stop="113479"/>
            <exon e_start="113307" e_stop="113185"/>
            <exon e_start="113108" e_stop="112772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114378" e_stop="114011" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.900">
            <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113673" e_stop="113479" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.838">
            <gDNA_intron_boundary i_start="113478" i_stop="113308" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113307" e_stop="113185" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.819">
            <gDNA_intron_boundary i_start="113184" i_stop="113109" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="113108" e_stop="112772" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114378" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114378" stop="114046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114160" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114139" stop="114011"/>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411144" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113673" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254867" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113658" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113650" stop="113479"/>
              <exon start="113307" stop="113185"/>
              <exon start="113108" stop="112807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251583" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA : AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAG : GGAGAAAATTATTTTGAGATTGATATTGATATGCACAGATTCAGTTACATCTCTAGAAAGGGTTGCGAAACATTCCTAGATAGGCTAAAGCTATGCTCCTTGGATGTAGGCCTCACAATTCAG : GGTAACAAAATTGAAGAATTGCCGGAGCAGATCTTATGTTGTATACGATTAAATGAAATCGACTATGTGAATTATCAGCAACTCGGGGCTAATAATGAAACCCCTTGAATAGGTGCACTAGCAGTGTATTCCACCGGATATGGCAAATAAGTGAAGAAATTATTGTTAGCTAGTTGTGTCCCTCCCTTTTACCTCAACTGTCAAATCTCTGAGAAGCAAATGGCTTATCGAGAGAGTAGTAGATATTTGAATCTATGGACAAGGATGAGAAAATAGTCGAGTGGTGTTCTTTGTTTCAATGTTTCATCAAACCGCAGTCGATCTGTTTTTATTTTGG</gDNA_template>
            <first_frame> W  S  D  G  *  F  K  D  S  N  I  Y  A  *  D  T  H  E  M  C  F  E  S  L  Q  S  Q  S  Y  S  T  P  E  W  F  V  N  *  D  F  I  R  L  H  V  S  F  Q  S  S  W  L  Y  N  L  Y  *  *  Q  Y  S  R  I  *  V  A  K  I  L  F  S  P  V  F  F  S  L  F  Y  R  C  H  Y  I  L  P  Q  F  F  R  V  K  L  T  V  K  E  *  V  L  S  C  T  L  S  F  P  K  V  M  Q  K  N  F  L  L  I  F  R  R  T  S  E :   E  *  W  M  M  K  W  K  K  *  R  L  F  Q  W  M  V  L  F  R  L  G  K  G  *  R  Y  *  V  V  *  Q  I  W  R  T  F  G  *  V  Q  Q  R  G  S  *  C  R  H  T  M  K  N  L  F  F  H  V  L  N  M  S  S  I  R :   E  K  I  I  L  R  L  I  L  I  C  T  D  S  V  T  S  L  E  R  V  A  K  H  S  *  I  G  *  S  Y  A  P  W  M  *  A  S  Q  F  R :   V  T  K  L  K  N  C  R  S  R  S  Y  V  V  Y  D  *  M  K  S  T  M  *  I  I  S  N  S  G  L  I  M  K  P  L  E  *  V  H  *  Q  C  I  P  P  D  M  A  N  K  *  R  N  Y  C  *  L  V  V  S  L  P  F  T  S  T  V  K  S  L  R  S  K  W  L  I  E  R  V  V  D  I  *  I  Y  G  Q  G  *  E  N  S  R  V  V  F  F  V  S  M  F  H  Q  T  A  V  D  L  F  L  F  W </first_frame>
            <second_frame>  G  L  M  V  N  L  K  I  V  I  F  M  L  K  I  H  M  K  C  V  S  S  L  F  K  V  K  V  I  Q  H  P  N  G  L  *  T  E  T  L  F  A  S  M  *  V  S  N  L  A  G  C  I  T  S  I  N  N  N  I  H  A  F  E  L  L  R  Y  C  F  R  P  S  F  S  L  F  F  T  G  A  I  I  S  Y  R  N  F  S  G  *  N  *  R  *  R  N  E  F  C  L  V  L  *  A  F  R  K  L  C  K  R  T  S  F  L  F  S  G  E  H  Q   : K  S  N  G  *  *  S  G  K  S  E  G  F  S  N  G  W  Y  C  S  V  *  G  K  V  K  D  I  R  S  C  S  K  Y  G  G  P  S  V  K  C  S  R  E  E  A  D  A  G  I  Q  *  K  T  C  S  F  T  S  S  T  *  V  L  *   : G  R  K  L  F  *  D  *  Y  *  Y  A  Q  I  Q  L  H  L  *  K  G  L  R  N  I  P  R  *  A  K  A  M  L  L  G  C  R  P  H  N  S   : G  *  Q  N  *  R  I  A  G  A  D  L  M  L  Y  T  I  K  *  N  R  L  C  E  L  S  A  T  R  G  *  *  *  N  P  L  N  R  C  T  S  S  V  F  H  R  I  W  Q  I  S  E  E  I  I  V  S  *  L  C  P  S  L  L  P  Q  L  S  N  L  *  E  A  N  G  L  S  R  E  *  *  I  F  E  S  M  D  K  D  E  K  I  V  E  W  C  S  L  F  Q  C  F  I  K  P  Q  S  I  C  F  Y  F   </second_frame>
            <third_frame>   V  *  W  L  I  *  R  *  *  Y  L  C  L  R  Y  T  *  N  V  F  R  V  S  S  K  S  K  L  F  N  T  R  M  V  C  E  L  R  L  Y  S  P  P  C  K  F  P  I  *  L  A  V  *  P  L  L  I  T  I  F  T  H  L  S  C  *  D  T  V  F  A  R  L  F  L  S  F  L  Q  V  P  L  Y  P  T  A  I  F  Q  G  E  T  D  G  K  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  S  Y  F  Q  E  N  I  R  :  R  V  M  D  D  E  V  E  K  V  K  A  F  P  M  D  G  T  V  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  D  L  R  L  S  A  A  E  R  K  L  M  Q  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  :  G  E  N  Y  F  E  I  D  I  D  M  H  R  F  S  Y  I  S  R  K  G  C  E  T  F  L  D  R  L  K  L  C  S  L  D  V  G  L  T  I  Q  :  G  N  K  I  E  E  L  P  E  Q  I  L  C  C  I  R  L  N  E  I  D  Y  V  N  Y  Q  Q  L  G  A  N  N  E  T  P  *  I  G  A  L  A  V  Y  S  T  G  Y  G  K  *  V  K  K  L  L  L  A  S  C  V  P  P  F  Y  L  N  C  Q  I  S  E  K  Q  M  A  Y  R  E  S  S  R  Y  L  N  L  W  T  R  M  R  K  *  S  S  G  V  L  C  F  N  V  S  S  N  R  S  R  S  V  F  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114178" stop="114011"/>
                    <exon start="113673" stop="113479"/>
                    <exon start="113307" stop="113185"/>
                    <exon start="113108" stop="113001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTVFARLFLSFLQVPLYPTAIFQGETDGKGMSFVLYFKLSESYAKELPSYFQENIRRVMDDEVEKVKAFPMDGTVPFRERLKILGRVANMEDLRLSAAERKLMQAYNEKPVLSRPQHEFYKGENYFEIDIDMHRFSYISRKGCETFLDRLKLCSLDVGLTIQGNKIEELPEQILCCIRLNEIDYVNYQQLGANNETP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="114378" e_stop="114011"/>
            <exon e_start="113673" e_stop="113363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.900" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="114378" e_stop="114011" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.900">
            <gDNA_intron_boundary i_start="114010" i_stop="113674" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113673" e_stop="113363" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114378" stop="114046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114218" stop="114011"/>
              <exon start="113673" stop="113363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228515" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTCTGATGGTTAATTTAAAGATAGTAATATTTATGCTTAAGATACACATGAAATGTGTTTCGAGTCTCTTCAAAGTCAAAGTTATTCAACACCCGAATGGTTTGTGAACTGAGACTTTATTCGCCTCCATGTAAGTTTCCAATCTAGCTGGCTGTATAACCTCTATTAATAACAATATTCACGCATTTGAGTTGCTAAGATACTGTTTTCGCCCGTCTTTTTCTCTCTTTTTTACAGGTGCCATTATATCCTACCGCAATTTTTCAGGGTGAAACTGACGGTAAAGGAATGAGTTTTGTCTTGTACTTTAAGCTTTCCGAAAGTTATGCAAAAGAACTTCCTTCTTATTTTCAGGAGAACATCAGA : AGAGTAATGGATGATGAAGTGGAAAAAGTGAAGGCTTTTCCAATGGATGGTACTGTTCCGTTTAGGGAAAGGTTAAAGATATTAGGTCGTGTAGCAAATATGGAGGACCTTCGGTTAAGTGCAGCAGAGAGGAAGCTGATGCAGGCATACAATGAAAAACCTGTTCTTTCACGTCCTCAACATGAGTTCTATAAGGTATTATTGTCAGATTTGAGCTTTATTTGGATGAACAACTGAAATTTTATGTTTGTGTTGGCATTAGTATGAGTGCCATCACATCTTAGAATAGAATGGTCGCATCGTCTTACTCA</gDNA_template>
            <first_frame> W  S  D  G  *  F  K  D  S  N  I  Y  A  *  D  T  H  E  M  C  F  E  S  L  Q  S  Q  S  Y  S  T  P  E  W  F  V  N  *  D  F  I  R  L  H  V  S  F  Q  S  S  W  L  Y  N  L  Y  *  *  Q  Y  S  R  I  *  V  A  K  I  L  F  S  P  V  F  F  S  L  F  Y  R  C  H  Y  I  L  P  Q  F  F  R  V  K  L  T  V  K  E  *  V  L  S  C  T  L  S  F  P  K  V  M  Q  K  N  F  L  L  I  F  R  R  T  S  E :   E  *  W  M  M  K  W  K  K  *  R  L  F  Q  W  M  V  L  F  R  L  G  K  G  *  R  Y  *  V  V  *  Q  I  W  R  T  F  G  *  V  Q  Q  R  G  S  *  C  R  H  T  M  K  N  L  F  F  H  V  L  N  M  S  S  I  R  Y  Y  C  Q  I  *  A  L  F  G  *  T  T  E  I  L  C  L  C  W  H  *  Y  E  C  H  H  I  L  E  *  N  G  R  I  V  L  L  </first_frame>
            <second_frame>  G  L  M  V  N  L  K  I  V  I  F  M  L  K  I  H  M  K  C  V  S  S  L  F  K  V  K  V  I  Q  H  P  N  G  L  *  T  E  T  L  F  A  S  M  *  V  S  N  L  A  G  C  I  T  S  I  N  N  N  I  H  A  F  E  L  L  R  Y  C  F  R  P  S  F  S  L  F  F  T  G  A  I  I  S  Y  R  N  F  S  G  *  N  *  R  *  R  N  E  F  C  L  V  L  *  A  F  R  K  L  C  K  R  T  S  F  L  F  S  G  E  H  Q   : K  S  N  G  *  *  S  G  K  S  E  G  F  S  N  G  W  Y  C  S  V  *  G  K  V  K  D  I  R  S  C  S  K  Y  G  G  P  S  V  K  C  S  R  E  E  A  D  A  G  I  Q  *  K  T  C  S  F  T  S  S  T  *  V  L  *  G  I  I  V  R  F  E  L  Y  L  D  E  Q  L  K  F  Y  V  C  V  G  I  S  M  S  A  I  T  S  *  N  R  M  V  A  S  S  Y  S </second_frame>
            <third_frame>   V  *  W  L  I  *  R  *  *  Y  L  C  L  R  Y  T  *  N  V  F  R  V  S  S  K  S  K  L  F  N  T  R  M  V  C  E  L  R  L  Y  S  P  P  C  K  F  P  I  *  L  A  V  *  P  L  L  I  T  I  F  T  H  L  S  C  *  D  T  V  F  A  R  L  F  L  S  F  L  Q  V  P  L  Y  P  T  A  I  F  Q  G  E  T  D  G  K  G  M  S  F  V  L  Y  F  K  L  S  E  S  Y  A  K  E  L  P  S  Y  F  Q  E  N  I  R  :  R  V  M  D  D  E  V  E  K  V  K  A  F  P  M  D  G  T  V  P  F  R  E  R  L  K  I  L  G  R  V  A  N  M  E  D  L  R  L  S  A  A  E  R  K  L  M  Q  A  Y  N  E  K  P  V  L  S  R  P  Q  H  E  F  Y  K  V  L  L  S  D  L  S  F  I  W  M  N  N  *  N  F  M  F  V  L  A  L  V  *  V  P  S  H  L  R  I  E  W  S  H  R  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0098C07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114178" stop="114011"/>
                    <exon start="113673" stop="113437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTVFARLFLSFLQVPLYPTAIFQGETDGKGMSFVLYFKLSESYAKELPSYFQENIRRVMDDEVEKVKAFPMDGTVPFRERLKILGRVANMEDLRLSAAERKLMQAYNEKPVLSRPQHEFYKVLLSDLSFIWMNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 405 chains have been computed
$ 
$ memory statistics:
$ 526768 bytes spliced alignments in total
$ 154 spliced alignments have been stored
$ 3420 bytes was the average size of a spliced alignment
$ 29536 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1640 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 587 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:54:43
-->
