<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:43:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546936" ref_strand="+" ref_description="SGN-E546936 [TUS-70-I23](-)">
      <seq>actgacggtacgtctacagtcacagcatctatctctggtgaattgggagaaaaactactctccatcacagcggaagacatatttgacataacttgtgctaagaggcaatcattgcatgttaatcatgtccatgagatgttgtccaacaaactatttcaaattcagctaaggaagtcatcttggggtacctcaaacaacacacaagcaacttactccattatttcctacatggaaaagcaacatactccgccaaccactattgataggaattccaaaaatataagacctttggagataagtgagatggcggtgacagaaacaactactgcagctggttcttcaaatgaaactctgaaatttgaaccacccacaccaacaaaaaaactgtaaaaggaacttcctcacttgattttgtgacttttgcttaatgaagtttttggattctcagtcgattcaagtttgctcaatagggagaatgaaatgaatcagttaactttttgtcaaggaaatgaatcagttaactttttgtgaagccttcgttaaaaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="28107" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27809" g_stop="27708" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27707" i_stop="27640" i_length="68">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.638" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27639" g_stop="27349" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="393" r_length="291" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27348" i_stop="25864" i_length="1485">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25863" g_stop="25716" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="541" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="559"/>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E546936" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27809" e_stop="27708"/>
          <exon e_start="27639" e_stop="27349"/>
          <exon e_start="25863" e_stop="25716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTACGGTACTGCTACAGTTACAGCATCTTTCTCTGGTGAACTGGGAGAAAAACTACTCTCCATGACAGCGGAAGACATATTTGACATAACCTGTGCTAAGGTGATCTCTTATTCCAACCAACACATCTATTGTCACAAAGAGTTTCTTCTCACTCTTTACATTTACAGAGGCAATCATTGCATGTTAATCATGTCCATGAGATTTTGTCCAACAAACTATTTCAAATTCAGCTAAGGAAGTCATCTTGGGGTACCTCAAACAATACACAAGCAACTTACTCCATTATTTCCTACATGGAAAAGCAGCATACTTCTCCAACAACTATTGATAGGAATTCCAAAAAGATAAGATCTTTGGAGATAAGTGAGATGGAGGTGACAGAAACAACTACTACAGTTGGTTCTTCAAATGCAACTCTGAAATTTGAACCACCCACACCAACAAAAAAATTGTAAAAGGTCAGTCTACATCTGATTAACACATTTATTATTCAAAATCAAACTATAAATCACAGTGATTAACAGTTCAAAACATTTACATGTATTTGTAATTAATAAAATTTAAGAGTGTCATTGATAAATTGTAAATTAGTTTAATAAATCATGAACTACTTGAAGCAGGAATGGAAAAAAATTGAGATAGTGTGTCTGCCCTGTCTGTCTTTGATGAGAATTTATTATTGCCTTTGATGAGGTTGGCTGCTATGGTTTGATACCTCATTTTGAGGTTGAATCATTGTTGCATTTTAATCTTTTTGTGCTCCATTTTTTGATGTATTTTACACCATGAGTTGCTGATTTTTTATCATATTGCTGCTGAATTTTAGACTAAACTATTTGTCACACTTCTGGTCAAATTTCTGTCTATGGTTGCTATGTGTCAAGCTAAATTTTGCTACACTTTTGGCTATATTTGATCCAATGGTTTGGCTATGTATTTGGAAACTTTGCTGCACTTTTAAGTTAGACAACTGCTGCATACCATGCCTCTGTTTAAATCTTTGTTTTTGATATGCCTTCATAATTCTGAATAATTATAGTTTAATCTTATAAAAAACAGACAACCCAACAATGTAAATCAAGCAACAGTTCAAAACATTTACAAGTATTTGAAATTTAATAAAATTTAAGAGTGTCATTGATAAATTGTAAATTAGTTTAATAAATCATGAACTACTTGAAATAGGAATGGAAAAAAATAGAGATAATGTGTCTGCCCTGTCTGGTTTGATACCTCATTTTGAGGTTGAACCATTGTTGCATTTTAATCTTTTTGTGCTCCATTTTTTGATGTATTTTACACCATGGGTTGCTGATTTTTTATCATATTGCTGCTGAATTTTAGACTAAACTATTTGTTACACTTCTGATCAAATTTATGTTTATTGTTTCTATGTGTCAAGCTAAATTTTGCTACATTTTTGGCTTTGAGCCAATGGTTTGGCTATGTATTTGGAAACTTTGCTGCACTTTTAAGTTAGACAACTACTGCATACCATGCCTCTGTTTGCATCTTTGTTTTTGATATGCCTTCAGAATTCTGAATAATTATAGTTTAATCTTATAAAGAATAGATCACCCAACAATTTAAATCAAGTGATGAGCTTCTACAATAGCATAACATATATCTTCCTAACATTTATTGTGTTCAAAATTTGTACCATTTTCCAGTTTAATTTCTGTGAACTTTACATTATTACTTACATGAGCATCTTTGTATAGTTTCACTGAATTCCCTTACCTCACTGGAAAATATGAATTTCTAACCCCTAAATACTGAGGATCTGAAGCAATCCTGTGTTTGTACACTGAGTCTTTCTCAACTTCTGCCATGTATCTCATGAGTTATTGCCTATTTACATACAGGAAATGACACATCCAACTGATATGAATTTGAATATTGTATTTTCACTTTTTAACATACCTTAATTTGTCTAATTACAGGAACTTCCTCACTTGATTTTGTGACTTTTGCTTAATGAAGTTTTTGGATTCCCAGTCGATTGAAGTTTGCTCAATAGGGAGAATGAAATGAATCAGTTAACTTTTTGTCCAGGAAATGAATCAGTTAATTTTTTGTGAAGCCTTCGTT</genome_strand>
        <mrna_strand>ACTGACGGTACGTCTACAGTCACAGCATCTATCTCTGGTGAATTGGGAGAAAAACTACTCTCCATCACAGCGGAAGACATATTTGACATAACTTGTGCTAAG....................................................................AGGCAATCATTGCATGTTAATCATGTCCATGAGATGTTGTCCAACAAACTATTTCAAATTCAGCTAAGGAAGTCATCTTGGGGTACCTCAAACAACACACAAGCAACTTACTCCATTATTTCCTACATGGAAAAGCAACATACTCCGCCAACCACTATTGATAGGAATTCCAAAAATATAAGACCTTTGGAGATAAGTGAGATGGCGGTGACAGAAACAACTACTGCAGCTGGTTCTTCAAATGAAACTCTGAAATTTGAACCACCCACACCAACAAAAAAACTGTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTCCTCACTTGATTTTGTGACTTTTGCTTAATGAAGTTTTTGGATTCTCAGTCGATTCAAGTTTGCTCAATAGGGAGAATGAAATGAATCAGTTAACTTTTTGTCAAGGAAATGAATCAGTTAACTTTTTGTGAAGCCTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707063" ref_strand="+" ref_description="SGN-E707063 [FA31DH01]">
      <seq>aaacttgtcatcctttcctgaagaaaaaaatattgctctctttctaagatactactgcttggttaaacatttctaacaaacatggtactaacattgaacatcgatcaaatagcattaacaacacaagattggatttgcaaagttcaaattgtggaaatcggacgcccgagagaaagccctgacaagaaatgtagatttcaaaatttgattttggaagatgaacaagaatgtcaaataaaggcagtactgtatgcagatgaaattgaacagtatgcagaaatgcttaaactcatgaatacctatctcatctctaccgcaagagtcaaaatctcccaaacttcacacggcaagccgatacacaaattttactgggttcttgacaaagaaacagtaattgaacatatcacaccatctaatggagttgagaatccacttccaccaccaacaaagctgaatatcacaacctttgaccgcattcctcacatgatgcttgattctgctgttgaaatcgatatactggcaatcgttctccgttgtagtcctcaaaaatacgcaggtcgcagtaatcataaatgtcgagaaattatcatttgtgacaattacaaaaatcaatttctcctcactctatgggaggattttggagaaattgaaggaaatgaaatcgaagcaaaaatggaaaaagaaatggatcttattgtaatccttggcaggaatataggaatctctacttttcaagggttgtcactgcagagtaggtacaattcaacaatacacatagctcctaattacccacaggcagtagaactcaccaaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="30598" stop="28393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30298" g_stop="30251" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="29878" i_length="373">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29877" g_stop="29702" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="225" r_length="177" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29701" i_stop="29569" i_length="133">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29568" g_stop="29283" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="511" r_length="286" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29282" i_stop="29191" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29190" g_stop="29100" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="602" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29099" i_stop="28980" i_length="120">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.166" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28979" g_stop="28846" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="736" r_length="134" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28845" i_stop="28773" i_length="73">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.924" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28772" g_stop="28694" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="815" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E707063" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30298" e_stop="30251"/>
          <exon e_start="29877" e_stop="29702"/>
          <exon e_start="29568" e_stop="29283"/>
          <exon e_start="29190" e_stop="29100"/>
          <exon e_start="28979" e_stop="28846"/>
          <exon e_start="28772" e_stop="28694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGTCATCCTTTCCTGAATAAAAAAATATTGCTCTCTTTCTAAGGTATTTTTCTCCTTTTCATGTTTTCCCTCTTCCCATTTTCAATTTTCTTGCAGATTTTAGTTGTCATCAAAGGAGAAAATCAATATGGGACAAAATTAAACTTGTTATTTTCAATTAAAATTTCAATTTTATTACTAGCAGACAGATTTGAGGAAATTATATTTTCTAATGTTTCACTGAGTTAGGGATAATTATATTCTTGCATGTTCTGAATTTCATTACAAATATTCCTATTGTGCTTTCATTACAAATTATATACTTTCAGTATGTGGAGGACATTATGTTCTTGCATGTTCTTCCTAATTCAATTGTTCATGTTCATGAAACCACATAAAAGAAAGGACTTTAACTCAATAGTGATGCTATCCTGCAGATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGATTGAAC-TCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGAACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTCCAAAATTTGATTTTGGAAGATGAACAAGTGAGCTCATTACATTTAATCTCATGAATATTCTCCTTTTTTAATATTCACCTCATATGAATATTTTTTGTTTTATTTTACTCGTAGTAAACAGTTTACCTTATCCTCAAATCTCTACAACTCTTACTTTCAGGAATGCCAAATAAAGGCAGTATTGTATGAAGATGAAATTGAACAGTATGCAGAAATGCATAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTATTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACGACCAACCAAGATGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCGGTATATCCACCCTATTAGCTTTTACAACAGTAAAATATACCTGCTTACTGATTCACACACTTACAACATTTCATTCTTTATTATATACACAGATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAGTGTTGAGAAATTATCATTTGTGACAATCAGTAAGCCCATTTTGCCTTATATATTCCCATTTAATGAAAATATTTTGAATAAGTAAACAATAAAATTGTTTACTTAATCGTACCATCACTTATCATCTGGTTGTTATCATGGTAATTTAGAAAAAATCAATTTCTCCTCACTCTATAGGAGGATTTTGGAGAAATTGAAGGAAATGAAATCGAAGCAAAAATGGAAAAAGAAATTGATCTTATTGTAATCATTGCCAGGAATATAGGAATCTCTGCTTTTCCAGGTACATGCATTGAACTTTTTACCAACAGAATTTATATAATAACAAAACGTTATGCAAGCTTTCTGTCGTACAGGGTTGTCACTGCAGAGTAGGTACAATTCAACAATACGCGTAGCTCCTAATTACCCACAGGCAGTAGAACTCACCAAATG</genome_strand>
        <mrna_strand>AAACTTGTCATCCTTTCCTGAAGAAAAAAATATTGCTCTCTTTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................ATACTACTGCTTGGTTAAACATTTCTAACAAACATGGTACTAACATTGAACATCGATCAAATAGCATTAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGGACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTTCAAAATTTGATTTTGGAAGATGAACAA.....................................................................................................................................GAATGTCAAATAAAGGCAGTACTGTATGCAGATGAAATTGAACAGTATGCAGAAATGCTTAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTCTTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACCACCAACAAAGCTGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCG............................................................................................ATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAATGTCGAGAAATTATCATTTGTGACAATTA........................................................................................................................CAAAAATCAATTTCTCCTCACTCTATGGGAGGATTTTGGAGAAATTGAAGGAAATGAAATCGAAGCAAAAATGGAAAAAGAAATGGATCTTATTGTAATCCTTGGCAGGAATATAGGAATCTCTACTTTTCAAG.........................................................................GGTTGTCACTGCAGAGTAGGTACAATTCAACAATACACATAGCTCCTAATTACCCACAGGCAGTAGAACTCACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736021" ref_strand="+" ref_description="SGN-E736021 [LC04AB11]">
      <seq>gtagattttcttctgttcttatttgtgaaactattaaaatacatttttcttttctgcaaaaggatttttatttggattgggtcgaggacaaccgcaaaataactccgcaggactaccttcaacttgcattgaagccaattcaaggtggtgacaaagatgttgctgctaaaaacgaggaatctgtcttttctcaaaatcaattccacatgttacattatctgtttgcccattctcagaacttcacactatttacgtccaacaacgatggagcttagtcttgaaataatactactgcttggttaaacatttctaacaaacatggtactaacattgaacatcgatcaaatagcattaacaacacaagattggatttgcaaagttcaaattgtggaaatcggacgcccgagagaaagccctgacaagaaatgtagatttcaaaatttgattttggaagatgaacaagaatgtcaaataaaggcagtactgtatgcagatgaaattgaacagtatgcagaaatgcttaaactcatgaatacctatctcatctctaccgcaagagtcaaaatctcccaaacttcacacggcaagccgatacacaaattttactgggttcttgacaaagaaacagtaattgaacatatcacaccatctaatggagttgagaatccacttccaccaccaacaaagctgaatatcacaacctttgaccgcattcctcacatgatgcttgattctgctgttgaaatcgatatactggcaatcgttctccgttgtagtcctcaaaaatacgcaggtcgcagtaatcataaatgtcgagaaattatcatttgtgacaattacaaaaatcaatttctcctcactctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="34625" stop="28654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34325" g_stop="34150" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34149" i_stop="33901" i_length="249">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33900" g_stop="33792" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="285" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33791" i_stop="29878" i_length="3914">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29877" g_stop="29702" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="462" r_length="177" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29701" i_stop="29569" i_length="133">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29568" g_stop="29283" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="748" r_length="286" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29282" i_stop="29191" i_length="92">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29190" g_stop="29100" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="839" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29099" i_stop="28980" i_length="120">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.166" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28979" g_stop="28954" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="865" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E736021" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34325" e_stop="34150"/>
          <exon e_start="33900" e_stop="33792"/>
          <exon e_start="29877" e_stop="29702"/>
          <exon e_start="29568" e_stop="29283"/>
          <exon e_start="29190" e_stop="29100"/>
          <exon e_start="28979" e_stop="28954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATTTTCTTCTGTTCTTGGTTATGAAACTATTAAAATACATTTTTCTTTTCTGCAAAAGGATTTTTATTTGGATTGGGTCAAGGACAACCGCAAAATAACTCCGCAGGACTACCTTAAACTTGCATTGAAGCCAGTTCAAGGTGGTGAGAAAGATGTTGCTGCTAAAAATGAGGTAACCACTTTACATGAATGTTTTGTTTGCTTTACTATGCTGTAATTATTAAATTTCTATTGTAACTTCCTCTATTTTTTGAACTGGTTTTTCTGAATTTGCACATGTTTTACTAAAAATAAAGAGAACTTGTACATGTTTTTATGCGATTTGGAAACGATCCTCCTTTTCCTTCTAATGAGTTAGCACTTAATGGTTGATTAACCATTGAGATTTTGACTGCATAATGATTTTACTTGATTTTTGCAGGAATCTGTCTTTTCTCAAAATCAATTCCACATGTTACATTATCTGTTTGCCCATACTCAGAACTTCACACTATTTACGCCCAACAACGATGGAGCTTAGTCTTGAAATAGTAAGTTCCTTCATAGCCACAATAGTGCTCATTATTTGATAATTCATGTTTTACCAAATGAAATATGTCTAACTTCTTAAAATGTTGTGATAATCACTTCTTCAATAAGGTTGGGATATAGGTCTAGAATGAATATATTCGTTCAGGAATTGTGTTCATTATTACTGCTCTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGTGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCAACATAAAATAATGCGGAAGACTTAAACTCATTAATAAAATCAATAAATATTATTATCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATGATCAAAGTACTAATCTAAGAGTATTCTAAAAAGCTAAAACAAATAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGGGTTACGGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATACACAAGAAGAAAACATAAAAGTAGGGGTTAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATCAACAATCACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAATTCTATATGTCGATTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCATGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTATCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATAATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTTATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATTCAAGCAAGCAATTTTCTCAAGATCATGGCTATCCTCTTCGTTTTCTCCTTCTCTCAATCGTTTTCCTCTTTCTCCTCTGTTCTTTCTATTATTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAACATGTAATTAAGTGTAAAAGATGACAATAATAACCCACAATTTAACTCAAGGTTACCTTTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAAGTTAACCACAAATCCGACTCCGACTGGGATTACGCAACCTATGACGGCCCGTCGCACCTGCGACGGTCCGTCATGCAGGTTCGTCAGATACTCGATTTCCTTAAGGAGCCTGTGACGGCCCGTCGTACCTATGACGGTCCATCCTGCACTTAAGTCACGACGTTCAGAGAATCGTTCCCTGTACCAAATTCTCAGGAGCTGAAGTGTTTTGAAACGGTGGATCATGACGGTTCGTCGTGCCTGTGACGGTCCGTCCTGCAGGTCCGTCACAGAGTTCAAAGAGTCGATTTCAGCACCCAAATTTTAGAATTTCAAAATGTTTTGGGACGAGACACCCTCGACGGTCCATCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAATTAAAATCTGCTGCTCAAAACGACTAAATAGGTCGTTACATGCTGTATGACAGAAAGTAAATTTTATAGCTCATTAATTGATATGTATTTTATATATTTATATGTTTCATTCATGGTATGATCTTATGCGCTTATTACAATAATAAAAAATCCTTATAAGGCAACTATTGCACATAGACTATAAATTATTACTACTTCAACATGAATGAATGTTTGGTTCTATCATGATCCAAGATTGAAATATGATCAATGTTATTTGATAGAAGAAATAACTCATCTCTTTCTCACATGTATATGCAACTGCTCTATTCAGATTACAGAATTCATAGTGAGTTAGCTTGTGAGTTAGTTTCCAGGGAATTTGCATGCTATGTACTTAAATGAATATAAAACTATTTTTACTTTTCTCTTGGTTTCCTTTCGCTTCAACACTTAGACCTCATACTGTTAAAGAATGCAGTCACAACTTCAATAGAACATTGGACAAATTGAAACATGTCAATCACCAAGTATATCTGACTTGGTTCACTACCAAATTGTGTGGTCCTTTCTAATTTAAAGAATAAGTCTTACTAATTTTGTTATGTCCAGGTAAGAAGATATCTATTATCTCAAGTAGTAAATTATTGATTTTTATAGACGTGAAAGCTTTATGTAATATATACATACCAACTGTAAAATTAAACTTGGACAGGAGTTAAAACTTGCTACACGACCATTTTGTTACCTCAAAAATAATATACTGGTTTTCAGTTTATTTTTATATAGTTACAATAACTGTTAATTCTCAAATAAATTCTCAAAAAATCCTAAAAGGCAACTTGATAGCAATCACTCAAGATAAATACACAATACATATACTTGAAAAAAGATAAGTGATTTCTGCCATTTTTATTTTCTACTCAATATTTATCAATTTCCAAATTTATATATCTAATAATAAAAAAATAAATTTCAAATGTAATAACTTCTTTTTCTGACATACATCATTAAATTTTACTATCAAATCCAATAACTTTTTCTCTTTTTTGGCAGAATCTCATTGGCTGCCAAATCTATCAATTTTAAAGAAGGCACCTGTACTTTTATATAGTATAATGTGTCTACTTTGTATTGTATATATTTTTATATATAGATAACATATATATATTATATATATATATATATATATATATATATATATACACACATTATTACACATTATTCATCAACATCATTACATTAAAGCACAAACTTGTCATCCTTTCCTGAATAAAAAAATATTGCTCTCTTTCTAAGGTATTTTTCTCCTTTTCATGTTTTCCCTCTTCCCATTTTCAATTTTCTTGCAGATTTTAGTTGTCATCAAAGGAGAAAATCAATATGGGACAAAATTAAACTTGTTATTTTCAATTAAAATTTCAATTTTATTACTAGCAGACAGATTTGAGGAAATTATATTTTCTAATGTTTCACTGAGTTAGGGATAATTATATTCTTGCATGTTCTGAATTTCATTACAAATATTCCTATTGTGCTTTCATTACAAATTATATACTTTCAGTATGTGGAGGACATTATGTTCTTGCATGTTCTTCCTAATTCAATTGTTCATGTTCATGAAACCACATAAAAGAAAGGACTTTAACTCAATAGTGATGCTATCCTGCAGATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGATTGAAC-TCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGAACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTCCAAAATTTGATTTTGGAAGATGAACAAGTGAGCTCATTACATTTAATCTCATGAATATTCTCCTTTTTTAATATTCACCTCATATGAATATTTTTTGTTTTATTTTACTCGTAGTAAACAGTTTACCTTATCCTCAAATCTCTACAACTCTTACTTTCAGGAATGCCAAATAAAGGCAGTATTGTATGAAGATGAAATTGAACAGTATGCAGAAATGCATAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTATTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACGACCAACCAAGATGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCGGTATATCCACCCTATTAGCTTTTACAACAGTAAAATATACCTGCTTACTGATTCACACACTTACAACATTTCATTCTTTATTATATACACAGATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAGTGTTGAGAAATTATCATTTGTGACAATCAGTAAGCCCATTTTGCCTTATATATTCCCATTTAATGAAAATATTTTGAATAAGTAAACAATAAAATTGTTTACTTAATCGTACCATCACTTATCATCTGGTTGTTATCATGGTAATTTAGAAAAAATCAATTTCTCCTCACTCTAT</genome_strand>
        <mrna_strand>GTAGATTTTCTTCTGTTCTTATTTGTGAAACTATTAAAATACATTTTTCTTTTCTGCAAAAGGATTTTTATTTGGATTGGGTCGAGGACAACCGCAAAATAACTCCGCAGGACTACCTTCAACTTGCATTGAAGCCAATTCAAGGTGGTGACAAAGATGTTGCTGCTAAAAACGAG.........................................................................................................................................................................................................................................................GAATCTGTCTTTTCTCAAAATCAATTCCACATGTTACATTATCTGTTTGCCCATTCTCAGAACTTCACACTATTTACGTCCAACAACGATGGAGCTTAGTCTTGAAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACTGCTTGGTTAAACATTTCTAACAAACATGGTACTAACATTGAACATCGATCAAATAGCATTAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGGACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTTCAAAATTTGATTTTGGAAGATGAACAA.....................................................................................................................................GAATGTCAAATAAAGGCAGTACTGTATGCAGATGAAATTGAACAGTATGCAGAAATGCTTAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTCTTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACCACCAACAAAGCTGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCG............................................................................................ATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAATGTCGAGAAATTATCATTTGTGACAATTA........................................................................................................................CAAAAATCAATTTCTCCTCACTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549453" ref_strand="+" ref_description="SGN-E549453 [TUS-70-I23]">
      <seq>agagaaagcaattatttttatccgagctaagagaaaaaagggctgagtcaaaaaggcaaacactccttcatcaatcaaatactacttgcgctcttagaattattagttcttcattatctcctcaggaagttgaagcttctgaagccacaaacctaccagttactttaactacaggacagcatcaatcaaatagtactggcgcccttacaatcaacacttcttcgttatctcctcaagaagttgaagctttcgaagttacaaacctaccagttaattcaactacaggagaacatcaattaaatagtactggcgcccttacaatcagcacttcttcgttatctcctcgagaagttgaagcttctaaagctataaacctaccagttacttcaactaaaggagaaagtatagttaattgcttatctacctttgaagtaggatcaacgtcgggtgcatctcatgctgcaagcagatcaagttcaagacgtacttcaaatagagcaacaacttttcctataagggtaactatttttatagttctagctgaaggaaatgacagagaagaactacctcttaatgcttcaaatttacttatttcagattatacaagtgcaaataagtgatgatgagttaccccagtgaattccacagctgaagcattagatgcactgaacacttatggatgttatatagatactactgcttgggtaaantattctaacaacatggtactaagatttgacatcgatcaaatagcattaacacacgagattggattttgcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="52649" stop="29484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52349" g_stop="52221" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52220" i_stop="52121" i_length="100">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52120" g_stop="52010" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="240" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52009" i_stop="50732" i_length="1278">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.231" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50731" g_stop="50621" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="351" r_length="111" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50620" i_stop="50504" i_length="117">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.272" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50420" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="435" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50419" i_stop="50328" i_length="92">
            <donor d_prob="0.626" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50327" g_stop="50265" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="498" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50264" i_stop="45729" i_length="4536">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.644" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45728" g_stop="45600" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="627" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45599" i_stop="44152" i_length="1448">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44151" g_stop="44089" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="690" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44088" i_stop="29878" i_length="14211">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29877" g_stop="29783" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="784" r_length="94" r_score="0.811"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E549453" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52349" e_stop="52221"/>
          <exon e_start="52120" e_stop="52010"/>
          <exon e_start="50731" e_stop="50621"/>
          <exon e_start="50503" e_stop="50420"/>
          <exon e_start="50327" e_stop="50265"/>
          <exon e_start="45728" e_stop="45600"/>
          <exon e_start="44151" e_stop="44089"/>
          <exon e_start="29877" e_stop="29783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTAAGTCAAAAAGACAAAAACACCTTCATCAATCAAATACTACTGCCGCTCTTACAATCAGTAGTTCTTCATTATCGCCTCAAGAAGGTTAGCTGAGCATATTCTTATCTTCCTTCTATCTTCTGAATATCTAAAACTATAGTTAGACGCTACTACTCTTACTATAGCTATTTTCCTCATTTTGTAGTTGAAGCTTCTGAAGCCACAAGCCTACCAGTTACTTTAACTACAGGACATCATCGATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAACAAGGTTAGCTAACCATATTTTACGTAAATCTGTTGTAAAAAAAACCAAAATTCTGTTAGTAATTTTCACGTATAGGATCAAACATAATGGATGCCTAGAGCACTTTTGAGAAATAATAGCTGAAATTTTCCTATTGGGTTGGGGGTTATCGAATCTTCACAGTTCACATGAGTTGCTTCTCCTCCGCCTTTACTTCGTTTGATCTGCTAAGAGTTTGGTTTCCATATTGTACTTTGTTCTATTTTTTATATGATTATATATGAATTATTTGTGTATATTGCTGCTAAGTGAATGGTTTGTCAATTACAAATAAACACTTCTGAGCCGTAGGAGGCCCAACATTTTATTTGTGGGAAAAATATCATATCATTATAACAACATTTGCTTAGAAATAGGTATAAAAAAATTGTTCAGTTCATTACATGTCAAGTATTAATTCTGGAAGTCATTACATGTTGTTTAATTCTTCCAAGAAATGCTCTTTTACAAAGCTTTGATAATTCTACACTCATATAAATAATTTTATGTTGCTGCCAGAGACATTTTGTCCTTACCACAGTAGTAAATGATTCTGAGTCGTTGGGATGAATCACAAGCTGCAACTCTATGTTCTCCTCTAATATAATCAATATTTCCTTAAAATATACCATCTAAAATATACATGTAGAGGACAGTTCATGTTGTATGCGCCAAGATTAAACTATGGAGACAAGCAATCATTTATTTGTTGAATGTGAATATGCTACAAAAGTAAGAGATACAACAACTGAATGGATAAAAGTCAGTCTACCTACAAGAGGTTCCAAGGAAACAGTAGAAATGATCAAGATAAAACATTGGAAGAGTTTGAAGAAGCAAGTGATAGCAGCTATGTGGGGAGGAAAGTAAGGAATTGGAAACACTTCAAAGGAGTGCATATGCAGTATACAGAGATAGTGAACACAATTAATAGAGAAATGGGTGAAACAATATAATGTTCAATAATACAAAAAAGCCAAGTAGGTGTAGTCGTTTTTTGGCAAAATTATGTAATTACATGTTTTTACTTTTCCTCAATATGTTGAGGTTTGGATGATTATAAGTCTCTTTTATGGTTTTTATGTTAATAATAATCACATTGGTTGCCAAAATACTTGAAGTTTTCTTTCAACCATCAGATGAAATCGTCTTGGTCACCATTTTATAGTCCCAACTTTGAAATGCGTCTTTTGAATATCTATAGATATAGTTTGACCCTTCATCTCACCTACTCTTACTAGAGGTTTTTTCCTCATTTTGTAGTTAAATCTTTCGAAGTTACAAATCTACCAGTTAATTTAACTATAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCGGCACTTCTTTGTTATTTCCTCAAGAAGGTTAGCTAACCATATTGTTACCTTCCTTTCCTTCAATCTGTCTTCTCAATATCTACAGCTATAGTTAGCTGCTTCAGCTCAACTACTCTTACTAAAGTTATTTTCCACATTATGTAGTTGAAGCTTCTGAAGCTTTAAACCTACCAGTTACTTCAACTAGAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAGGTCAGTTCAGAAATATTACTTAAACTATTTTGACTATATTGATTTTTAATAATTGGCTAACTGTGTCTAAATATTTTTATTCCTGATACTAGGATCAACGTCGAGTGCATCTTATGCTGCAAGTAGATCAAGTTCAAGTCGTACTTCAAATAGAGGTATGCTTCTCTCTACCATAGTAAAAAAACACTATATGCCTTTATGTAACAAATAATTGCTTTTTACCATGCACAGGTAGAAATAAGTTAGAAGTAAATCTACAAAATGATAATTTATTGATAAAAGGTTACTTACTTTTAAAGAAAATTCCAAATTGCAAATTTTGTGCTGCAAAAAGATTTCAATATGAATCACCAGGTTTTTGTAGTAATAATGGATCAATTAGGCTAACTTCTCATAACATGCCTATTGAGTTGCGAAATTTGTTCTTAGGTGACTCCAAAGAATCCCAACATTTTCGAACTTATGGTAGAGCCTAAAATAATATGTTTGCATTCACTTCACAGTAAATTATGATAGAGAATTATCAAGGAGATATCGTGGCATCTATACATTTAAAGTCCAAGGACAAATGTATCACTTCATTGTCGATTTGATACCCTCAGGAGGAAAAGGAAAAAATTTACAATTATATTTATATGATAATGAAAATGAGCAAACAAACCGAATGGAATTATCAGATAATCTTAATGAGATAATTGTTACAAAGCTCATAGATCTACTAAAAGTTAATCCTTATTCTACTTTTTTAAGATCGCTTACAGCTCTTCCAAATTTATCTGAATTTTATATTGCTCTAAACTCAAGTTCCAATTTAGACCAGAGAACACATAACTTACCAGCTGCATCCGAAGTTGGGGCAATTTGGATTGATGATCAATTAAATGATAAAATTTCCACACCACATATTAGAATTTACACTCATAGTAACAGAAGTCAATTGGTAAATTACTACTATGGATGTTATGATCCATTGCAATATCCACTGTTGTTTCCTTATGGTCAAAATGGCTGGCATTGTGGTATTAAAAAAATAAAGAAATACAATTATTCCAACAGACAAATTTACTGTGAATATGAGCAGCTACCAAGTATAATCAACATCACTTCTATTGATGGAGTCCTTCACATGGAATCTAAAGTTTTATCAAAAGGATTGAGAAAAAGAGAAACTGTTTCCCTTCGTGAATATTATTGTTATAAAATTCAAATAAGAGATGAAGAACCAAATGAAACTTTACATTCTAGAAGGGTATTTCAACAATACATAGTTGACCAATATATAAAACTAGAGACACAAAGATTAGATTTTATCTTATTTAATCAAGATCTATTTAGAGTTGAAGCCTTCCAAGGAATCATTGATTTATTAAGGCAAGGAGAAAGAGATGCTTCCAATATTGGGAGACAAAAATTTCTTCCTGGTAGTTTCATTGGAGGTCCAAGAGATATGCGTCGAAGATATATGGATGCCATTGCTTTGGTACAACATTTTGGAAAACCTGACATATTTTTAACGATGACTTGCAATCTTTCTTGGCCTATAATACAAGACCATTTACAACCAATGGAAGAAGTTCAAAATAGACCTGATTTAGAGTATTCAGAGCAAAAGTAGAAGAAATTAAAACTGATATTCAAAAAAGAAACATATTTGGAAAGGTTGCAGCATTAATGTATACAGTTGAGTTTCAAAAAAGGGGTCTTCCCCATGCCCATCTTCTAATTATTCTTATGGATGGATATAAATTGTTAACACAAGAAGCATATGATAAAATTGTATGTGCTGAACTACCTGATCCCCATATTGATCATGATCTATACAAACTTGTGACCAAACATATGACTCATGGTCCCTGTGGATGTTTAAATCCTTCAAATTCATGCATGCAAAAAGAAGGAAAATGTAAATTCAAATATCCAAAACAACTTACTAAACAAACAACCAAAGGAAAGAATTCATATCCCCTTTACGAAAGACCAAAAATGATCACACCAATCCAAGTTAGAGAACACAACATTAATAATTCTTGGATTGTTCCGTACAATCCGTATTTACTGAAGAAATTTGGTTGTCATATGAATGTTGAAATATGTTCTGACATTAAGGCCGTCAAATACATTTACAAATATATTTGCAAAGGACATGATAAAATTGCATTTTCTGTAAATAATAATGATACTAACATAGAAATAGATGAAATAAAAGAATACCATTCTGCTAGATGGGTTTCTCCACGGAGGCTACATGGCGTCTGCTTGCTTTTGCGATAAGTGAAATGACTCCAAGTGTTTGCCAGTTGCAATTGCATCTTGATGGACAACAATTTGTTTCTTTCAAAAATAACCAAACTGTCGATCAAATAATAAACAATCCAATCATTAAAAAAACGATGTTAACAAAATTCTTTCTTATGAACAAAATCAATAACGATGCTATAAATCTGAATTTACTGTATAAAGAGTTTCCTCAACACATTGTATGGTCATCATCATACAAAATGTGCTCGCATCGAAAACAACAACTTACTATCGGGCGTATTGTCACATGTCATCCAACCGAAGGAGAAAGATATTATCTTAGGTTGCTTCTAATGAATGTAAGAAGACCAACATCTTACGAAGATCTTCGTACAATGAATGAAAGATGCTACACTACATTTAGAGAAGCTGCAGAAAAAAGAGGCTTATTACGTTCTAATAACAACATAATTGATTGTATGTCTGAAGCACTCTGCTATCAAATGCCTTATAGTTTAAGAAGACTATTTGCAACATTATTAGTTTATTCTAACCCTGGTAACCCAATAGATCTTTGGAAAAAATACGAAGACTCTATGTAAGAGGATTTTAAAACAATTCCAAATGTTACAAAAAATGATATTCAACTCTTAGTTTTAAATCATATCAATGAAGTTCTACTTTCAATGGGACATAACATAAATGAATTCAAAGATATATTTGGAAATCTTAGCTCTTCTAGAACAACTAATGATGCAAAAGAAATTTATTTTGAAAGAAATATAATAGTGTCTGAAGAAGATATACTTCTACAAAGCAAATTAAATATTGAACAAAAAAGAATATATAACATATTTCTTGAAAGAGTATATTCTAATAAATTAGGAGCTTTTTTCATTGATGGTCCTGGGGGAACTGGAAAAACATTTCTATATCGAGCTTTGTTGGCTGTTGTAAGAACAAAAGGATTCATAGCTTTGGCAACTGCAAGTTCTGGTGTGGCAGCTTCAATACTTCCGGGAGGACGAACAGCTCATTCACGTATTAAAATTCCTGTTGACATCGATGACAATTTCACTTGCAATATTAAAAAACAAAGTTCGTTAGCGATTCTAATTCGAGATTCAAAACTAATTGTTTGGGATGAAGTCTCAATGGCAAAAAAAAACATGATTGAAGCTCTTGATACACTTCTAAAAGATCTTATGAATACAAGAGCACTGTTTGGTGGAAAAGTAGTAGTTTTGGGGGGGGGGGCTTTAGACAAACACTTCCTGTTGTTCTTAGTGTAAAAAAAGAAGACTTTATAAATCAAAGTTTATTATACTCCCGTATTTGGAATCATCTTGAAAAATTGTCCTTATCTGAAAACATGCGTGCGAAAAAAAGATCCAGCATTTTGTGCATATTTAATGGGAATTGGAAATGGGCAAGAAAAAACTAACAATTGCAACAAAATTGAAATTCCCAATAATTTTATCATTCCCTTTACAGATGAAATAGAATCTTTAAATATTTTATTTAATGTTACTTATCCTAATTTGCGTACATTCTATTGTAATCCACCTTTTATGAATTCCCGTATTATTTTGACAACAAAAAATGATTTTGTTGATGAAATAAATGATATGCTTATACATCGATTTCCCGATGATGCTACAGTATATACGGCTATTGATGAAACTATAGAACCAAATGATCAATGCCAATTTGAAGATTTTTTGCATACCTTACATCCTGCTAACTTACCACCTTATAGATTAACTTTGAAAAAAAATTGTCCAGTTATATAATTAAGAAACCTAAATCCTACTGAAGGTTTATGCAATGGTACACGATTGATATGTCATGATTTTAAGTCAAATGTTATTAGTGCTACTATTTGCAGTGGTGATTTTAAAGATAAACATGTCTTTATTCCAAAGATACCATTACTAGCATCACAAGATGAGAAACATCCAGTTCCCTTCAAAATAATACAATTTCCGATAAGATTATGTTTTGCTATGACTATAAACAAAGCTCAAGGTCAAACATTAGATTTTGTTGGAATATATTTGCGTGAACCAGTTTTTTCACATGGACAACTTTATGTTGCTTTATCTCGAGCAAAATGTTCAGACAATGTAAAAATGTTAATACGTCCACCAACTGCACAGGACACAGATGGTCATTCTACATATAATGTAGTTTATGACGAAATCATTCGAAAAGCATTGTCATGATACTTTTAAAAGTAATAAGTGCAACAAGTAAGCATCCTTATGCTAGATGTTGTGAAATTTTGGATTCCTTTACTTCATTTGTTTTTAAAGCTAACTACAAGTTACACTGCAATCATATCACTTCAACATTTGAAGTTTTAAATTTCATCTTTCAATTCAAATTGTTCCTGTCCAATTACTCAAATTTGAAATTGTTGATTTTCACTAACCTAAATACTAACATTGCAGCAACAACTTTCCCTATAAGGGTAACTATTTTTGTAGTTCTAGATGAAGGAAATGACAGAGAAGAACTACCTCTTAATGCTTCAAATTTTCTTATTTCAGATTATACAAGTGCAAATAAGTGATGATGAGGTAATCAAAATTTCCAGTCATTACATTAAACCAACTAATGCTCTTAACTTTTTTCACTGATCAGTCAATTTTCTTGCTTTTCTTCTCTGTTTGTTTATTATTTAACTTCTCGCATCTCATTTTGATGTTGAATATCTATTCAATTTTAGCCTTTCGCTGATTCTTTTTTTGTGTTGTATTTTGAGCCGCTGTTTTTTCTGTTTTTTCACCAGATTTCACTCAATGGTTGCTATATGTTTCTTCTTCAGTGTTCCAACATTTAACATATATGTTTTGCTGAGTTTATTTGGGCTTTTTTTCTTCGCTCTTTTGGATTATTTTTATTTAATGATGTTGTTAGTGTACTATATAAACTTGAAAAATCTGCGTTGTCAGCTTCTCCTTCTTCTCTTGCTTCTGCTATGATTTTTCCTCATTTTAATATGTTTGACGCTATTTTTTAAAAAATTTCAACTGTTTTAACATCTTTTTATGACGCTGAGAAAGACAAAAGAAGTATTGTCCGTTATTTCTTCACTTTTGTGTGGGTCGCTGGATCTATTTTCTTAGCAATTTGCTGATTACATTTTACAGTTTACACTTTAGGTTTACGTTTTACTTCAACCTACCCCCTCATTTTATCTTATGTTTTTAGGATTATGATTTTCATAGTTGATTCCTTTATATAACTTATAACGAAGATTTAAAACTGTTTAAGTGAAATATTTCTACAGCCAGTTCATTTGACATTTCCATTGGACGATTCAAAATTTGATAAAGCTTAAGTTTGATTAGGATTACAATTATTAAATTACAATGAAAATAAGTTGGTGAATAATTTTTTTTGAAAAAAATCATTCCTAATTGTCATGACATTCTATAGTATAATGCAAAATTATGTACCTTACTATTGTTAGTTCCTACATTGCATCTCTCTGTTATATTTTCCATCTTGGTGAAGTATTATATTGGGTATAATACTACATTACTACTTAATTATATAGTATATTTGTCGTCTTTTATCATGACAAGTTAAGTGGGCTAATATTGAGCCTCTCTACCTCGCAGTTGTAGTGGTATTCTCCTAAGAGAGTAGAGAAATTTCAAGATTAAAATCTCTCATTAGGATTTTTTCCCATTTTCCATTTGTAACACTTGCCATGAGGTGACATGATTCAATAACAACTAACTCAGGTACACATTTCAAAAATCTCATTCTTCAGATTTATACAGTGTTTTTTCATTATTGCCTCTCTATTTCTTAAAACGTAAAATGAAGATGCCATATAATTATATGTATGATTGTGAATTCATGATTCAAGGTCTCTTTTCTTCAATGTCTTAAAATAATGTTAATGCTTCATTTCAAATGTTACATTCACTGATGAAGAAATCTTGATTTGTTTTTCTTATTCTTTACTCTCTTTTACATTGAGATTTTTCACCTTCTATGTCTTCTTGCTACACAGTTACCCCAATGAATTCAACACCTGAAGCATTAGATGCACTGAACACTTATGGATGGTATATAGGTATCGTACTTTCTGAAGCCTCCCTTCTTATTTTCAATGATTTTTTAGTTTCACCAAGCTGGACATCAATTTAAAACACAATGTTGAGTGAGCTCTTTTTCATTTTATTTTTCTAATTGAAGTAGTAGAAATCATGTACAAGATATCCTTTATTGCGTAATGTATCTTTTCTTTTCCTCTTTCATTCTCTTGTGGATGTGAAAATCATCATTGGTTGTCTATAGTCTTAGAATTTCATGTATTTATAATTTTGGGAAGGTATCGATTATACTCGATGTCAAAAAAAAATACATTTGTTCTGAGGATCAAAAGAGAGACGAATCATGATAAAATGATGGATAAATTAGAATCTATGTTTTGGAGGATTTCAACTTTCAACTGGAGTTCACCATATATGGAAGCATATAGTTCCTATATTTACGGGTTTACGCCTCAGATGGAAGATGGCTACTCTGATTTGCAATTTTGAGAAGCAGAAATCTGAAACCTTTTGTGAATCAAGTATCAACTCCTGATTTATCTACTTTTATGTTTTGGAAAGTTGAAGGAATTATATGTTAGAGGGGAGACCATTCAGCATTGTTCAGTTTCCTTTGTGTTGCTTCTGTAATTTCTTTATTTTCTTTTCCTTTTGCAATGAACTTGTCATCCTCTATGTAAAGAATGTTTCTTGTACTTTTCATACATCAATCACAGTCGAATTATGAGTCAAAGCTATAGTACAGTTGATATTGTTCTTGTAGAAACTCCATTGATTTATGTAATTAACTAGGTCTATTGCAACGACATCACAATTATCTTTATTATTATTAACTTATAGTTGTATACTTTCCCATGTAAATTATCATGTGTAACTTAGTGCCGCTTCTTACATTACCGAAAATATGTAGCTGAGAGCCTGTTGTATGCCCAATAGCTTCTTCGCAGGAGTAGCGGTTTTCAAGTGCTGCAACTCATCGGCATGCACAAAAGGTATTTGGTTGTGGAGTTCACCTTTAAGGAGAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCAACGGACCCTACGACGGACCGTCATGGTCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTATGCGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGCATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGAGAGAGATAGATTGATCGATTGAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCAGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGTTTAATTGTATGTTTGCGTGAATATGATTATGTGATTGTAATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGAATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCAACATGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACTAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACGGACATGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGCGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTAAGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATATTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAAGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTACCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAAAAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTAATACGAATTAGTATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACAAGGGCTGTGGCTCGAGGAAGAGTAGCAGCAAGAGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGACAAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCGTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTCCAGAAGTACAACAGTCAACTGTTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAAGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAGTTGAAATCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTGAAGGGAACACCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGCTTGTTCATGGAGAAGTATATCCCCCGAACCTTGAGGGATAGGAAAAGGGATGAGTTCCTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTATAGGTAGCGGCTACAGCGAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTAGAGGGAGTGAAAAGCCCAACTTCAAGAGTTGTTGAGCAAATGCTTCATTAGACCAAGTGCATCTCTTTGGGGTGCTACGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGCATAGACTACAGACAACTGAATAAGGTAACCATAAAGAACAAGTATCCTCTTCCTCGCATTGATGACTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCGGTTATCATCAGTTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACAAGGTATGGGCATTATAAATTTGTAGTGATGTCTTTTGGTCTTACGAATGCCCCTGCTGCATTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACCTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAACAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTATCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGAACGTGGTTTCTAAGGATGAAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCTAATAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTCGTCAAGGGATTCTCTTCTATCGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTCCCATTTGTATGGTCGGATGAATGTGAAGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCCATTCTCACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTATGATGCATCCTATTCTTGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGACAATTAAAAGTGCATGAACGTAACTATCCCACTCATGATTTGGAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGGTCTACACGGATCATCGTAGCCTTCAGTATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAGTTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGGAAGGCGAATGTTGTAGCTGATGCTTTAAGTAGGAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAAACTCTAGCAAATGACTTGATGACATTAGAAGTAAATGAGAAGGGAGGATTGCTGGCTTCGGTGGAGGCAAGATCTTCCTTTCTTGACAAAATTAAGGGAAGACAGTTCGATGATGAGAAACTGTGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGAACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGGGTATGTGTACCCCGCGTCGATGGTTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGCGCAACCAAGATGTATCGTGACCTAAAGCAACAATTTTGGTGGAGTAGAATGAAGCGTGACACTGTGGATTTTATTGCCAAATGTCCAAACTGCCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCAGAATGGAAGTGGGAAAGAATTGCAATGGATTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTGATTTTATTCCAGTTAAGGTGACTTACAATGCCGAGAAGTTAGCCAAGATCTATATCTCAGAAATCGTTCGATTGCATGGTGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCGGAATTGGGTACTAGGTTGGACCTTAGTACCGCGTTCCATCCCCAAACCGATGGTCAGTCTGAGCGAACTATTCAAGTGTTGGAGGATATGCTTCGTGCGTGTGTGATAGAATTTGGTGGCCATTGGGATAGCTTCTTACCCTTTGCGGAGTTTTCATACAATAACAGCTATCACTCAAGCATTGATATGGCGCCAATTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCGTTCTAGGTCAGACCTTGGGGTACTGATCTCTTAAGGGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGTAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTATGAGAGGTGGCTTATGATTTACCCTTGCCTCCAGGGCTGTCCTGAGTGCATCCGGTATTCCATGTGTCGATGATGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGGTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATCTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAAGTGCAATGGAAGAATCGACCGGTTGAAGAAACCACTTGGGAGAAGGAGGAAGATATGCAAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTTTCGCCCTGGTTTTCCTTCTTTTGATAGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACAGGCAGAACCGTCGTGGTCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGGCGGAATGAAAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTATGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATATTAATTTGGGGTAAAAGAAAGAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGAGAGAGATAGATTGATCGATTGAGGGAGAGAGAGAAACGATCAAGAAGAAGAGGAAAACATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATTGTGTGTTTGCGTGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGAATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTATAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGATGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGATATAGGGGATCGGAGTGTCACGTACCTACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACAAAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACAATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTCTTCTTCTTGTTTATTTGTGGAGTACAGCAAAATGTGCCATCGTCTTCAACTCAACAGTAATTTAAGCCAGTCTTACTACATCAGAAATTCAGGATGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCATATAGGAGGGTAAGTGTTGGTGCCAGTCGCAACCCGATTTGGGTCGTAACAACTCTTGATGGAATAGAATACAACTTATTACTGCTGGACACAGAAGGAATTGATGCTTATGATCAAACGGTTAGTTTTCACCCTTTTAACATTATTGGTTTTCTAAAGGAGGATACTAACCTAGAACATGCTATATGTTTATATATTACATTGTCATACCTTTGTATAGCTAAACTTTTCACAAACTAAAGGAACTAGCTCTATAACTCCAGAACATGCCTTGTTTTTTCCTCTGTCCTTTCTATCCTTCCTGTCACTGACTTTTGCCTTTTATAAATTTTTGTTTTATTGTTGTCTCAAAAAATTTCTGTTTTTTTTTGCTTTTTGACAGGGTACATATAGCACAAAGATATTCTCCCTGGCAGTCCTTCTTTCAAGTATGTTTGTATATAACCAGGTTAGGAGCACTGAAACTTGGATTTCGTTTGCTTCTTTTGATATGCGATTTTCAACCCTTCTGCCTCAGGATTCAGTTAATTTCCTTGTTGCTACAGTCAGTTTGTTTGTTAGTTGTCCTGATAATCTCTTTAATCCTGTAATTTAGATGGGAGGTATCGATGAAGTTGCGCTTGACTGCCTCTCTCTTGTCACTGAAATGACTAGGCATATTCGTGTTAGAGCCTCTGGAGGAAAGGCCAGTGCTTCTAAGCTTAGGCAGTTCTCCCCAGTCTTCATTTGGTTGCCTAGAGTAATTTACAATTTGTTTATTATCACTGTAGATTTTCTTCTGTTCTTGGTTATGAAACTATTAAAATACATTTTTCTTTTCTGCAAAAGGATTTTTATTTGGATTGGGTCAAGGACAACCGCAAAATAACTCCGCAGGACTACCTTAAACTTGCATTGAAGCCAGTTCAAGGTGGTGAGAAAGATGTTGCTGCTAAAAATGAGGTAACCACTTTACATGAATGTTTTGTTTGCTTTACTATGCTGTAATTATTAAATTTCTATTGTAACTTCCTCTATTTTTTGAACTGGTTTTTCTGAATTTGCACATGTTTTACTAAAAATAAAGAGAACTTGTACATGTTTTTATGCGATTTGGAAACGATCCTCCTTTTCCTTCTAATGAGTTAGCACTTAATGGTTGATTAACCATTGAGATTTTGACTGCATAATGATTTTACTTGATTTTTGCAGGAATCTGTCTTTTCTCAAAATCAATTCCACATGTTACATTATCTGTTTGCCCATACTCAGAACTTCACACTATTTACGCCCAACAACGATGGAGCTTAGTCTTGAAATAGTAAGTTCCTTCATAGCCACAATAGTGCTCATTATTTGATAATTCATGTTTTACCAAATGAAATATGTCTAACTTCTTAAAATGTTGTGATAATCACTTCTTCAATAAGGTTGGGATATAGGTCTAGAATGAATATATTCGTTCAGGAATTGTGTTCATTATTACTGCTCTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGTGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCAACATAAAATAATGCGGAAGACTTAAACTCATTAATAAAATCAATAAATATTATTATCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATGATCAAAGTACTAATCTAAGAGTATTCTAAAAAGCTAAAACAAATAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGGGTTACGGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATACACAAGAAGAAAACATAAAAGTAGGGGTTAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATCAACAATCACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAATTCTATATGTCGATTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCATGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTATCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATAATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTTATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATTCAAGCAAGCAATTTTCTCAAGATCATGGCTATCCTCTTCGTTTTCTCCTTCTCTCAATCGTTTTCCTCTTTCTCCTCTGTTCTTTCTATTATTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAACATGTAATTAAGTGTAAAAGATGACAATAATAACCCACAATTTAACTCAAGGTTACCTTTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAAGTTAACCACAAATCCGACTCCGACTGGGATTACGCAACCTATGACGGCCCGTCGCACCTGCGACGGTCCGTCATGCAGGTTCGTCAGATACTCGATTTCCTTAAGGAGCCTGTGACGGCCCGTCGTACCTATGACGGTCCATCCTGCACTTAAGTCACGACGTTCAGAGAATCGTTCCCTGTACCAAATTCTCAGGAGCTGAAGTGTTTTGAAACGGTGGATCATGACGGTTCGTCGTGCCTGTGACGGTCCGTCCTGCAGGTCCGTCACAGAGTTCAAAGAGTCGATTTCAGCACCCAAATTTTAGAATTTCAAAATGTTTTGGGACGAGACACCCTCGACGGTCCATCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAATTAAAATCTGCTGCTCAAAACGACTAAATAGGTCGTTACATGCTGTATGACAGAAAGTAAATTTTATAGCTCATTAATTGATATGTATTTTATATATTTATATGTTTCATTCATGGTATGATCTTATGCGCTTATTACAATAATAAAAAATCCTTATAAGGCAACTATTGCACATAGACTATAAATTATTACTACTTCAACATGAATGAATGTTTGGTTCTATCATGATCCAAGATTGAAATATGATCAATGTTATTTGATAGAAGAAATAACTCATCTCTTTCTCACATGTATATGCAACTGCTCTATTCAGATTACAGAATTCATAGTGAGTTAGCTTGTGAGTTAGTTTCCAGGGAATTTGCATGCTATGTACTTAAATGAATATAAAACTATTTTTACTTTTCTCTTGGTTTCCTTTCGCTTCAACACTTAGACCTCATACTGTTAAAGAATGCAGTCACAACTTCAATAGAACATTGGACAAATTGAAACATGTCAATCACCAAGTATATCTGACTTGGTTCACTACCAAATTGTGTGGTCCTTTCTAATTTAAAGAATAAGTCTTACTAATTTTGTTATGTCCAGGTAAGAAGATATCTATTATCTCAAGTAGTAAATTATTGATTTTTATAGACGTGAAAGCTTTATGTAATATATACATACCAACTGTAAAATTAAACTTGGACAGGAGTTAAAACTTGCTACACGACCATTTTGTTACCTCAAAAATAATATACTGGTTTTCAGTTTATTTTTATATAGTTACAATAACTGTTAATTCTCAAATAAATTCTCAAAAAATCCTAAAAGGCAACTTGATAGCAATCACTCAAGATAAATACACAATACATATACTTGAAAAAAGATAAGTGATTTCTGCCATTTTTATTTTCTACTCAATATTTATCAATTTCCAAATTTATATATCTAATAATAAAAAAATAAATTTCAAATGTAATAACTTCTTTTTCTGACATACATCATTAAATTTTACTATCAAATCCAATAACTTTTTCTCTTTTTTGGCAGAATCTCATTGGCTGCCAAATCTATCAATTTTAAAGAAGGCACCTGTACTTTTATATAGTATAATGTGTCTACTTTGTATTGTATATATTTTTATATATAGATAACATATATATATTATATATATATATATATATATATATATATATATACACACATTATTACACATTATTCATCAACATCATTACATTAAAGCACAAACTTGTCATCCTTTCCTGAATAAAAAAATATTGCTCTCTTTCTAAGGTATTTTTCTCCTTTTCATGTTTTCCCTCTTCCCATTTTCAATTTTCTTGCAGATTTTAGTTGTCATCAAAGGAGAAAATCAATATGGGACAAAATTAAACTTGTTATTTTCAATTAAAATTTCAATTTTATTACTAGCAGACAGATTTGAGGAAATTATATTTTCTAATGTTTCACTGAGTTAGGGATAATTATATTCTTGCATGTTCTGAATTTCATTACAAATATTCCTATTGTGCTTTCATTACAAATTATATACTTTCAGTATGTGGAGGACATTATGTTCTTGCATGTTCTTCCTAATTCAATTGTTCATGTTCATGAAACCACATAAAAGAAAGGACTTTAACTCAATAGTGATGCTATCCTGCAGATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGA-TTGAACTCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTT</genome_strand>
        <mrna_strand>AGAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTGAGTCAAAAAGGCAAACACTCCTTCATCAATCAAATACTACTTGCGCTCTTAGAATTATTAGTTCTTCATTATCTCCTCAGGAAG....................................................................................................TTGAAGCTTCTGAAGCCACAAACCTACCAGTTACTTTAACTACAGGACAGCATCAATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGCTTTCGAAGTTACAAACCTACCAGTTAATTCAACTACAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCAGCACTTCTTCGTTATCTCCTCGAGAAG.....................................................................................................................TTGAAGCTTCTAAAGCTATAAACCTACCAGTTACTTCAACTAAAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAG............................................................................................GATCAACGTCGGGTGCATCTCATGCTGCAAGCAGATCAAGTTCAAGACGTACTTCAAATAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTTTTCCTATAAGGGTAACTATTTTTATAGTTCTAGCTGAAGGAAATGACAGAGAAGAACTACCTCTTAATGCTTCAAATTTACTTATTTCAGATTATACAAGTGCAAATAAGTGATGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCCAGTGAATTCCACAGCTGAAGCATTAGATGCACTGAACACTTATGGATGTTATATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACTGCTTGGGTAAANTATTCTAAC-AACATGGTACTAAGATTTGACATCGATCAAATAGCATTAAC-ACACGAGATTGGATTTTGCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356257" ref_strand="+" ref_description="SGN-E356257 [cTOS-20-J8]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="43264" stop="31178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36948" g_stop="36552" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36551" i_stop="31606" i_length="4946">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31605" g_stop="31485" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="517" r_length="120" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E356257" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36948" e_stop="36552"/>
          <exon e_start="31605" e_stop="31485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGGCGGAATGAAAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTT-GGTGGAAATTTGGGTCTCTAAACTATGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACG-TTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATATTAATTTGGGGTAAAAGAAAGAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGAGAGAGATAGATTGATCGATTGAGGGAGAGAGAGAAACGATCAAGAAGAAGAGGAAAACATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATTGTGTGTTTGCGTGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGAATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTATAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGATGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGATATAGGGGATCGGAGTGTCACGTACCTACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACAAAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTATGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACAATAATATTGATATATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTCTTCTTCTTGTTTATTTGTGGAGTACAGCAAAATGTGCCATCGTCTTCAACTCAACAGTAATTTAAGCCAGTCTTACTACATCAGAAATTCAGGATGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCATATAGGAGGGTAAGTGTTGGTGCCAGTCGCAACCCGATTTGGGTCGTAACAACTCTTGATGGAATAGAATACAACTTATTACTGCTGGACACAGAAGGAATTGATGCTTATGATCAAACGGTTAGTTTTCACCCTTTTAACATTATTGGTTTTCTAAAGGAGGATACTAACCTAGAACATGCTATATGTTTATATATTACATTGTCATACCTTTGTATAGCTAAACTTTTCACAAACTAAAGGAACTAGCTCTATAACTCCAGAACATGCCTTGTTTTTTCCTCTGTCCTTTCTATCCTTCCTGTCACTGACTTTTGCCTTTTATAAATTTTTGTTTTATTGTTGTCTCAAAAAATTTCTGTTTTTTTTTGCTTTTTGACAGGGTACATATAGCACAAAGATATTCTCCCTGGCAGTCCTTCTTTCAAGTATGTTTGTATATAACCAGGTTAGGAGCACTGAAACTTGGATTTCGTTTGCTTCTTTTGATATGCGATTTTCAACCCTTCTGCCTCAGGATTCAGTTAATTTCCTTGTTGCTACAGTCAGTTTGTTTGTTAGTTGTCCTGATAATCTCTTTAATCCTGTAATTTAGATGGGAGGTATCGATGAAGTTGCGCTTGACTGCCTCTCTCTTGTCACTGAAATGACTAGGCATATTCGTGTTAGAGCCTCTGGAGGAAAGGCCAGTGCTTCTAAGCTTAGGCAGTTCTCCCCAGTCTTCATTTGGTTGCCTAGAGTAATTTACAATTTGTTTATTATCACTGTAGATTTTCTTCTGTTCTTGGTTATGAAACTATTAAAATACATTTTTCTTTTCTGCAAAAGGATTTTTATTTGGATTGGGTCAAGGACAACCGCAAAATAACTCCGCAGGACTACCTTAAACTTGCATTGAAGCCAGTTCAAGGTGGTGAGAAAGATGTTGCTGCTAAAAATGAGGTAACCACTTTACATGAATGTTTTGTTTGCTTTACTATGCTGTAATTATTAAATTTCTATTGTAACTTCCTCTATTTTTTGAACTGGTTTTTCTGAATTTGCACATGTTTTACTAAAAATAAAGAGAACTTGTACATGTTTTTATGCGATTTGGAAACGATCCTCCTTTTCCTTCTAATGAGTTAGCACTTAATGGTTGATTAACCATTGAGATTTTGACTGCATAATGATTTTACTTGATTTTTGCAGGAATCTGTCTTTTCTCAAAATCAATTCCACATGTTACATTATCTGTTTGCCCATACTCAGAACTTCACACTATTTACGCCCAACAACGATGGAGCTTAGTCTTGAAATAGTAAGTTCCTTCATAGCCACAATAGTGCTCATTATTTGATAATTCATGTTTTACCAAATGAAATATGTCTAACTTCTTAAAATGTTGTGATAATCACTTCTTCAATAAGGTTGGGATATAGGTCTAGAATGAATATATTCGTTCAGGAATTGTGTTCATTATTACTGCTCTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGTGAACCAACCAATCTAAACCTTAACATTTCAATGTAATATCAACATAAAATAATGCGGAAGACTTAAACTCATTAATAAAATCAATAAATATTATTATCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTATGATCAAAGTACTAATCTAAGAGTATTCTAAAAAGCTAAAACAAATAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAGTAATGAAGACTGGCTAGGGTTACGGTTGAGTCGAAGATGACGGCACGTTTGCTGCACTCCACAAATACACAAGAAGAAAACATAAAAGTAGGGGTTAGTACAAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATATCATCAACAATCACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCCCCTAATTCTATATGTCGATTCGTGACACCCGATCCCCTAAATCTATGTGTCGGTTCATGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACATGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCCCCTAATCTCATTCTATCAACTCATCAAGCCTTCTCCCTTATCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCCCTTACCAAGGCATCATAATTAAAAAGAGATTAGGTTTTTATCAAGATTTGGGATTCAATAACTTTATCATGCTTAATATAATCACAATTATATAATCACGTTCATGCATGCATACAATTAAGCACATAGCAGGGTTTTACAATACTACCAATACATATCATTCTCTATTAAGAGTTTACTATGAAAGCATGAAAACCATTCAAGCAAGCAATTTTCTCAAGATCATGGCTATCCTCTTCGTTTTCTCCTTCTCTCAATCGTTTTCCTCTTTCTCCTCTGTTCTTTCTATTATTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAACATGTAATTAAGTGTAAAAGATGACAATAATAACCCACAATTTAACTCAAGGTTACCTTTTTTATCCCCCAAGAAATTGAGTTATTAATATAGACCCACGAAATATATAATTATAGCAGGAATAGTCCAAAACGCCCCTTTAAAAGTTAACCACAAATCCGACTCCGACTGGGATTACGCAACCTATGACGGCCCGTCGCACCTGCGACGGTCCGTCATGCAGGTTCGTCAGATACTCGATTTCCTTAAGGAGCCTGTGACGGCCCGTCGTACCTATGACGGTCCATCCTGCACTTAAGTCACGACGTTCAGAGAATCGTTCCCTGTACCAAATTCTCAGGAGCTGAAGTGTTTTGAAACGGTGGATCATGACGGTTCGTCGTGCCTGTGACGGTCCGTCCTGCAGGTCCGTCACAGAGTTCAAAGAGTCGATTTCAGCACCCAAATTTTAGAATTTCAAAATGTTTTGGGACGAGACACCCTCGACGGTCCATCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAATTAAAATCTGCTGCTCAAAACGACTAAATAGGTCGTTACATGCT</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAA-TTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGGGTTTTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAC-CCTGCGATGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAAATAAAGTCTGCTGCTCAAAACGACTAAACGGGTCGTTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="32552" stop="33389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32852" g_stop="33089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32852" e_stop="33089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTGATTGTTGATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="37406" stop="38183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37706" g_stop="37882" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37706" e_stop="37882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAATTGGCGCCATATCAATGCTTGAGTGATAGCTGTTATTGTATGAAAACTCCGCAAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATAGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="38887" stop="40196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39187" g_stop="39900" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39187" e_stop="39900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTATTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGTAGCACCCCAAAGAGATGCACTTGGTCTAATGAAGCATTTGCTCAACAACTCTTGAAGTTGGGCTTTTCACTCCCTCTACCTCTATCA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCT-TAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="38887" stop="40082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39187" g_stop="39782" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39187" e_stop="39782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTATTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="38887" stop="40012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39187" g_stop="39712" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39187" e_stop="39712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTATTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="38958" stop="40195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39258" g_stop="39885" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39258" e_stop="39885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGTAGCACCCCAAAGAGATGCACTTGGTCTAATGAAGCATTTGCTCAACAACTCTTGAAGTTGGGCTTTTCACTC</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="38958" stop="39916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39258" g_stop="39616" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39258" e_stop="39616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="41015" stop="39862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40715" g_stop="40162" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40715" e_stop="40162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCGTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTCCAGAAGTACAACAGTCAACTGTTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAAGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAGTTGAAATCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTGAAGGGAACACCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="41374" stop="40489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41074" g_stop="40789" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41074" e_stop="40789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAAAAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTAATACGAATTAGTATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACAAGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="41796" stop="40526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41496" g_stop="40833" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41496" e_stop="40833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCA-AGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGT-TTTA-TTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTACCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAAAAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTAATACGAATTAGTATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAAC</genome_strand>
        <mrna_strand>CAGCA-AACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TT--C-CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="41877" stop="40622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41577" g_stop="40922" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41577" e_stop="40922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTTATTTGTGGAGTACAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAAGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTACCAGTCGCAACCCGG-TTTGGGTCGTGAC-AAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAAAAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-TTATTTGTGGAGTGCAGC-AAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATA---ATAG-TAGT-TATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715811" ref_strand="+" ref_description="SGN-E715811 [FB15BD02]">
      <seq>atcaagttcaagtcgtacttcaaatagagattatacaagtgcaaataagtgatgatgagttgtagtggtattctcctaagagagtagagaaatttcaagattaaaatctctcattaggattttttcccattttccatttgtaacacttgccatgaggtgacatgattcaataaaaactaactcagttaccccagtgaattcaacacctgaagcattagatgcactgaacacttatggatggtatatagcaaaacgtgccatcgtcttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcttagtttagtcatttgattgtagatgttcttgtgatgatgacttccaggttttgggaataatagatgttgaatattgatagttattgaattggttttattaatgagtttaagtcttccgcattanaaaaaaaaaaaaaaaaaaaaaaatcctcgggggggggccgggaccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="50593" stop="40897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50293" g_stop="50265" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50264" i_stop="45630" i_length="4635">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.849" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45629" g_stop="45600" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="59" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45599" i_stop="44553" i_length="1047">
            <donor d_prob="0.928" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44552" g_stop="44427" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="185" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44426" i_stop="44152" i_length="275">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44151" g_stop="44089" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44088" i_stop="41494" i_length="2595">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41493" g_stop="41198" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="544" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="570"/>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E715811" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50293" e_stop="50265"/>
          <exon e_start="45629" e_stop="45600"/>
          <exon e_start="44552" e_stop="44427"/>
          <exon e_start="44151" e_stop="44089"/>
          <exon e_start="41493" e_stop="41198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTCAAGTCGTACTTCAAATAGAGGTATGCTTCTCTCTACCATAGTAAAAAAACACTATATGCCTTTATGTAACAAATAATTGCTTTTTACCATGCACAGGTAGAAATAAGTTAGAAGTAAATCTACAAAATGATAATTTATTGATAAAAGGTTACTTACTTTTAAAGAAAATTCCAAATTGCAAATTTTGTGCTGCAAAAAGATTTCAATATGAATCACCAGGTTTTTGTAGTAATAATGGATCAATTAGGCTAACTTCTCATAACATGCCTATTGAGTTGCGAAATTTGTTCTTAGGTGACTCCAAAGAATCCCAACATTTTCGAACTTATGGTAGAGCCTAAAATAATATGTTTGCATTCACTTCACAGTAAATTATGATAGAGAATTATCAAGGAGATATCGTGGCATCTATACATTTAAAGTCCAAGGACAAATGTATCACTTCATTGTCGATTTGATACCCTCAGGAGGAAAAGGAAAAAATTTACAATTATATTTATATGATAATGAAAATGAGCAAACAAACCGAATGGAATTATCAGATAATCTTAATGAGATAATTGTTACAAAGCTCATAGATCTACTAAAAGTTAATCCTTATTCTACTTTTTTAAGATCGCTTACAGCTCTTCCAAATTTATCTGAATTTTATATTGCTCTAAACTCAAGTTCCAATTTAGACCAGAGAACACATAACTTACCAGCTGCATCCGAAGTTGGGGCAATTTGGATTGATGATCAATTAAATGATAAAATTTCCACACCACATATTAGAATTTACACTCATAGTAACAGAAGTCAATTGGTAAATTACTACTATGGATGTTATGATCCATTGCAATATCCACTGTTGTTTCCTTATGGTCAAAATGGCTGGCATTGTGGTATTAAAAAAATAAAGAAATACAATTATTCCAACAGACAAATTTACTGTGAATATGAGCAGCTACCAAGTATAATCAACATCACTTCTATTGATGGAGTCCTTCACATGGAATCTAAAGTTTTATCAAAAGGATTGAGAAAAAGAGAAACTGTTTCCCTTCGTGAATATTATTGTTATAAAATTCAAATAAGAGATGAAGAACCAAATGAAACTTTACATTCTAGAAGGGTATTTCAACAATACATAGTTGACCAATATATAAAACTAGAGACACAAAGATTAGATTTTATCTTATTTAATCAAGATCTATTTAGAGTTGAAGCCTTCCAAGGAATCATTGATTTATTAAGGCAAGGAGAAAGAGATGCTTCCAATATTGGGAGACAAAAATTTCTTCCTGGTAGTTTCATTGGAGGTCCAAGAGATATGCGTCGAAGATATATGGATGCCATTGCTTTGGTACAACATTTTGGAAAACCTGACATATTTTTAACGATGACTTGCAATCTTTCTTGGCCTATAATACAAGACCATTTACAACCAATGGAAGAAGTTCAAAATAGACCTGATTTAGAGTATTCAGAGCAAAAGTAGAAGAAATTAAAACTGATATTCAAAAAAGAAACATATTTGGAAAGGTTGCAGCATTAATGTATACAGTTGAGTTTCAAAAAAGGGGTCTTCCCCATGCCCATCTTCTAATTATTCTTATGGATGGATATAAATTGTTAACACAAGAAGCATATGATAAAATTGTATGTGCTGAACTACCTGATCCCCATATTGATCATGATCTATACAAACTTGTGACCAAACATATGACTCATGGTCCCTGTGGATGTTTAAATCCTTCAAATTCATGCATGCAAAAAGAAGGAAAATGTAAATTCAAATATCCAAAACAACTTACTAAACAAACAACCAAAGGAAAGAATTCATATCCCCTTTACGAAAGACCAAAAATGATCACACCAATCCAAGTTAGAGAACACAACATTAATAATTCTTGGATTGTTCCGTACAATCCGTATTTACTGAAGAAATTTGGTTGTCATATGAATGTTGAAATATGTTCTGACATTAAGGCCGTCAAATACATTTACAAATATATTTGCAAAGGACATGATAAAATTGCATTTTCTGTAAATAATAATGATACTAACATAGAAATAGATGAAATAAAAGAATACCATTCTGCTAGATGGGTTTCTCCACGGAGGCTACATGGCGTCTGCTTGCTTTTGCGATAAGTGAAATGACTCCAAGTGTTTGCCAGTTGCAATTGCATCTTGATGGACAACAATTTGTTTCTTTCAAAAATAACCAAACTGTCGATCAAATAATAAACAATCCAATCATTAAAAAAACGATGTTAACAAAATTCTTTCTTATGAACAAAATCAATAACGATGCTATAAATCTGAATTTACTGTATAAAGAGTTTCCTCAACACATTGTATGGTCATCATCATACAAAATGTGCTCGCATCGAAAACAACAACTTACTATCGGGCGTATTGTCACATGTCATCCAACCGAAGGAGAAAGATATTATCTTAGGTTGCTTCTAATGAATGTAAGAAGACCAACATCTTACGAAGATCTTCGTACAATGAATGAAAGATGCTACACTACATTTAGAGAAGCTGCAGAAAAAAGAGGCTTATTACGTTCTAATAACAACATAATTGATTGTATGTCTGAAGCACTCTGCTATCAAATGCCTTATAGTTTAAGAAGACTATTTGCAACATTATTAGTTTATTCTAACCCTGGTAACCCAATAGATCTTTGGAAAAAATACGAAGACTCTATGTAAGAGGATTTTAAAACAATTCCAAATGTTACAAAAAATGATATTCAACTCTTAGTTTTAAATCATATCAATGAAGTTCTACTTTCAATGGGACATAACATAAATGAATTCAAAGATATATTTGGAAATCTTAGCTCTTCTAGAACAACTAATGATGCAAAAGAAATTTATTTTGAAAGAAATATAATAGTGTCTGAAGAAGATATACTTCTACAAAGCAAATTAAATATTGAACAAAAAAGAATATATAACATATTTCTTGAAAGAGTATATTCTAATAAATTAGGAGCTTTTTTCATTGATGGTCCTGGGGGAACTGGAAAAACATTTCTATATCGAGCTTTGTTGGCTGTTGTAAGAACAAAAGGATTCATAGCTTTGGCAACTGCAAGTTCTGGTGTGGCAGCTTCAATACTTCCGGGAGGACGAACAGCTCATTCACGTATTAAAATTCCTGTTGACATCGATGACAATTTCACTTGCAATATTAAAAAACAAAGTTCGTTAGCGATTCTAATTCGAGATTCAAAACTAATTGTTTGGGATGAAGTCTCAATGGCAAAAAAAAACATGATTGAAGCTCTTGATACACTTCTAAAAGATCTTATGAATACAAGAGCACTGTTTGGTGGAAAAGTAGTAGTTTTGGGGGGGGGGGCTTTAGACAAACACTTCCTGTTGTTCTTAGTGTAAAAAAAGAAGACTTTATAAATCAAAGTTTATTATACTCCCGTATTTGGAATCATCTTGAAAAATTGTCCTTATCTGAAAACATGCGTGCGAAAAAAAGATCCAGCATTTTGTGCATATTTAATGGGAATTGGAAATGGGCAAGAAAAAACTAACAATTGCAACAAAATTGAAATTCCCAATAATTTTATCATTCCCTTTACAGATGAAATAGAATCTTTAAATATTTTATTTAATGTTACTTATCCTAATTTGCGTACATTCTATTGTAATCCACCTTTTATGAATTCCCGTATTATTTTGACAACAAAAAATGATTTTGTTGATGAAATAAATGATATGCTTATACATCGATTTCCCGATGATGCTACAGTATATACGGCTATTGATGAAACTATAGAACCAAATGATCAATGCCAATTTGAAGATTTTTTGCATACCTTACATCCTGCTAACTTACCACCTTATAGATTAACTTTGAAAAAAAATTGTCCAGTTATATAATTAAGAAACCTAAATCCTACTGAAGGTTTATGCAATGGTACACGATTGATATGTCATGATTTTAAGTCAAATGTTATTAGTGCTACTATTTGCAGTGGTGATTTTAAAGATAAACATGTCTTTATTCCAAAGATACCATTACTAGCATCACAAGATGAGAAACATCCAGTTCCCTTCAAAATAATACAATTTCCGATAAGATTATGTTTTGCTATGACTATAAACAAAGCTCAAGGTCAAACATTAGATTTTGTTGGAATATATTTGCGTGAACCAGTTTTTTCACATGGACAACTTTATGTTGCTTTATCTCGAGCAAAATGTTCAGACAATGTAAAAATGTTAATACGTCCACCAACTGCACAGGACACAGATGGTCATTCTACATATAATGTAGTTTATGACGAAATCATTCGAAAAGCATTGTCATGATACTTTTAAAAGTAATAAGTGCAACAAGTAAGCATCCTTATGCTAGATGTTGTGAAATTTTGGATTCCTTTACTTCATTTGTTTTTAAAGCTAACTACAAGTTACACTGCAATCATATCACTTCAACATTTGAAGTTTTAAATTTCATCTTTCAATTCAAATTGTTCCTGTCCAATTACTCAAATTTGAAATTGTTGATTTTCACTAACCTAAATACTAACATTGCAGCAACAACTTTCCCTATAAGGGTAACTATTTTTGTAGTTCTAGATGAAGGAAATGACAGAGAAGAACTACCTCTTAATGCTTCAAATTTTCTTATTTCAGATTATACAAGTGCAAATAAGTGATGATGAGGTAATCAAAATTTCCAGTCATTACATTAAACCAACTAATGCTCTTAACTTTTTTCACTGATCAGTCAATTTTCTTGCTTTTCTTCTCTGTTTGTTTATTATTTAACTTCTCGCATCTCATTTTGATGTTGAATATCTATTCAATTTTAGCCTTTCGCTGATTCTTTTTTTGTGTTGTATTTTGAGCCGCTGTTTTTTCTGTTTTTTCACCAGATTTCACTCAATGGTTGCTATATGTTTCTTCTTCAGTGTTCCAACATTTAACATATATGTTTTGCTGAGTTTATTTGGGCTTTTTTTCTTCGCTCTTTTGGATTATTTTTATTTAATGATGTTGTTAGTGTACTATATAAACTTGAAAAATCTGCGTTGTCAGCTTCTCCTTCTTCTCTTGCTTCTGCTATGATTTTTCCTCATTTTAATATGTTTGACGCTATTTTTTAAAAAATTTCAACTGTTTTAACATCTTTTTATGACGCTGAGAAAGACAAAAGAAGTATTGTCCGTTATTTCTTCACTTTTGTGTGGGTCGCTGGATCTATTTTCTTAGCAATTTGCTGATTACATTTTACAGTTTACACTTTAGGTTTACGTTTTACTTCAACCTACCCCCTCATTTTATCTTATGTTTTTAGGATTATGATTTTCATAGTTGATTCCTTTATATAACTTATAACGAAGATTTAAAACTGTTTAAGTGAAATATTTCTACAGCCAGTTCATTTGACATTTCCATTGGACGATTCAAAATTTGATAAAGCTTAAGTTTGATTAGGATTACAATTATTAAATTACAATGAAAATAAGTTGGTGAATAATTTTTTTTGAAAAAAATCATTCCTAATTGTCATGACATTCTATAGTATAATGCAAAATTATGTACCTTACTATTGTTAGTTCCTACATTGCATCTCTCTGTTATATTTTCCATCTTGGTGAAGTATTATATTGGGTATAATACTACATTACTACTTAATTATATAGTATATTTGTCGTCTTTTATCATGACAAGTTAAGTGGGCTAATATTGAGCCTCTCTACCTCGCAGTTGTAGTGGTATTCTCCTAAGAGAGTAGAGAAATTTCAAGATTAAAATCTCTCATTAGGATTTTTTCCCATTTTCCATTTGTAACACTTGCCATGAGGTGACATGATTCAATAACAACTAACTCAGGTACACATTTCAAAAATCTCATTCTTCAGATTTATACAGTGTTTTTTCATTATTGCCTCTCTATTTCTTAAAACGTAAAATGAAGATGCCATATAATTATATGTATGATTGTGAATTCATGATTCAAGGTCTCTTTTCTTCAATGTCTTAAAATAATGTTAATGCTTCATTTCAAATGTTACATTCACTGATGAAGAAATCTTGATTTGTTTTTCTTATTCTTTACTCTCTTTTACATTGAGATTTTTCACCTTCTATGTCTTCTTGCTACACAGTTACCCCAATGAATTCAACACCTGAAGCATTAGATGCACTGAACACTTATGGATGGTATATAGGTATCGTACTTTCTGAAGCCTCCCTTCTTATTTTCAATGATTTTTTAGTTTCACCAAGCTGGACATCAATTTAAAACACAATGTTGAGTGAGCTCTTTTTCATTTTATTTTTCTAATTGAAGTAGTAGAAATCATGTACAAGATATCCTTTATTGCGTAATGTATCTTTTCTTTTCCTCTTTCATTCTCTTGTGGATGTGAAAATCATCATTGGTTGTCTATAGTCTTAGAATTTCATGTATTTATAATTTTGGGAAGGTATCGATTATACTCGATGTCAAAAAAAAATACATTTGTTCTGAGGATCAAAAGAGAGACGAATCATGATAAAATGATGGATAAATTAGAATCTATGTTTTGGAGGATTTCAACTTTCAACTGGAGTTCACCATATATGGAAGCATATAGTTCCTATATTTACGGGTTTACGCCTCAGATGGAAGATGGCTACTCTGATTTGCAATTTTGAGAAGCAGAAATCTGAAACCTTTTGTGAATCAAGTATCAACTCCTGATTTATCTACTTTTATGTTTTGGAAAGTTGAAGGAATTATATGTTAGAGGGGAGACCATTCAGCATTGTTCAGTTTCCTTTGTGTTGCTTCTGTAATTTCTTTATTTTCTTTTCCTTTTGCAATGAACTTGTCATCCTCTATGTAAAGAATGTTTCTTGTACTTTTCATACATCAATCACAGTCGAATTATGAGTCAAAGCTATAGTACAGTTGATATTGTTCTTGTAGAAACTCCATTGATTTATGTAATTAACTAGGTCTATTGCAACGACATCACAATTATCTTTATTATTATTAACTTATAGTTGTATACTTTCCCATGTAAATTATCATGTGTAACTTAGTGCCGCTTCTTACATTACCGAAAATATGTAGCTGAGAGCCTGTTGTATGCCCAATAGCTTCTTCGCAGGAGTAGCGGTTTTCAAGTGCTGCAACTCATCGGCATGCACAAAAGGTATTTGGTTGTGGAGTTCACCTTTAAGGAGAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCAACGGACCCTACGACGGACCGTCATGGTCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTATGCGATGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGCATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGAGAGAGATAGATTGATCGATTGAGGGAGAGAGAGAAACGATCGAGAAGAAGAGGAAAACATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCAGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTACTATATGTTTAATTGTATGTTTGCGTGAATATGATTATGTGATTGTAATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGAATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCAACATGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCAGGTGTCACTAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACGGACATGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGCGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTAAGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATATTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAAGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATT</genome_strand>
        <mrna_strand>ATCAAGTTCAAGTCGTACTTCAAATAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATACAAGTGCAAATAAGTGATGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAGTGGTATTCTCCTAAGAGAGTAGAGAAATTTCAAGATTAAAATCTCTCATTAGGATTTTTTCCCATTTTCCATTTGTAACACTTGCCATGAGGTGACATGATTCAATAAAAACTAACTCAG...................................................................................................................................................................................................................................................................................TTACCCCAGTGAATTCAACACCTGAAGCATTAGATGCACTGAACACTTATGGATGGTATATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="42179" stop="41102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41879" g_stop="41402" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41879" e_stop="41402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACGGACATGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGCGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTAAGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGA-TTTACGATAATA-TT-G-ATATATATTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGA-TATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGC-AAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363331" ref_strand="+" ref_description="SGN-E363331 [cLPP-4-L17]">
      <seq>gagaaagcaattatttttatccgagctaagagaaaaaagggctgagtcaaaaaggcaaacactccttcatcaatcaaatactacttgcgctcttagaattattagttcttcattatctcctcaggaagttgaagcttctgaagccacaaacctaccagttactttaactacaggacagcatcaatcaaatagtactggcgcccttacaatcaacacttcttcgttatctcctcaagaagttgaagctttcgaagttacaaacctaccagttaattcaactacaggagaacatcaattaaatagtactggcgcccttacaatcagcacttcttcgttatctcctcgagaagttgaagcttctaaagctataaacctaccagttacttcaactaaaggagaaagtatagttaattgcttatctacctttgaagtaagatcaacgtcgggtgcatctcatgctgcaagcagatcaagttcaagacgtacttcaaatagagcaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="52648" stop="49965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52348" g_stop="52221" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52220" i_stop="52121" i_length="100">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.885" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52120" g_stop="52010" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="239" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52009" i_stop="50732" i_length="1278">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.231" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50731" g_stop="50621" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="350" r_length="111" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50620" i_stop="50504" i_length="117">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.272" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50420" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="434" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50419" i_stop="50328" i_length="92">
            <donor d_prob="0.626" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50327" g_stop="50265" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="497" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50264" i_stop="50189" i_length="76">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.715" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50188" g_stop="50181" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="505" r_length="8" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E363331" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52348" e_stop="52221"/>
          <exon e_start="52120" e_stop="52010"/>
          <exon e_start="50731" e_stop="50621"/>
          <exon e_start="50503" e_stop="50420"/>
          <exon e_start="50327" e_stop="50265"/>
          <exon e_start="50188" e_stop="50181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTAAGTCAAAAAGACAAAAACACCTTCATCAATCAAATACTACTGCCGCTCTTACAATCAGTAGTTCTTCATTATCGCCTCAAGAAGGTTAGCTGAGCATATTCTTATCTTCCTTCTATCTTCTGAATATCTAAAACTATAGTTAGACGCTACTACTCTTACTATAGCTATTTTCCTCATTTTGTAGTTGAAGCTTCTGAAGCCACAAGCCTACCAGTTACTTTAACTACAGGACATCATCGATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAACAAGGTTAGCTAACCATATTTTACGTAAATCTGTTGTAAAAAAAACCAAAATTCTGTTAGTAATTTTCACGTATAGGATCAAACATAATGGATGCCTAGAGCACTTTTGAGAAATAATAGCTGAAATTTTCCTATTGGGTTGGGGGTTATCGAATCTTCACAGTTCACATGAGTTGCTTCTCCTCCGCCTTTACTTCGTTTGATCTGCTAAGAGTTTGGTTTCCATATTGTACTTTGTTCTATTTTTTATATGATTATATATGAATTATTTGTGTATATTGCTGCTAAGTGAATGGTTTGTCAATTACAAATAAACACTTCTGAGCCGTAGGAGGCCCAACATTTTATTTGTGGGAAAAATATCATATCATTATAACAACATTTGCTTAGAAATAGGTATAAAAAAATTGTTCAGTTCATTACATGTCAAGTATTAATTCTGGAAGTCATTACATGTTGTTTAATTCTTCCAAGAAATGCTCTTTTACAAAGCTTTGATAATTCTACACTCATATAAATAATTTTATGTTGCTGCCAGAGACATTTTGTCCTTACCACAGTAGTAAATGATTCTGAGTCGTTGGGATGAATCACAAGCTGCAACTCTATGTTCTCCTCTAATATAATCAATATTTCCTTAAAATATACCATCTAAAATATACATGTAGAGGACAGTTCATGTTGTATGCGCCAAGATTAAACTATGGAGACAAGCAATCATTTATTTGTTGAATGTGAATATGCTACAAAAGTAAGAGATACAACAACTGAATGGATAAAAGTCAGTCTACCTACAAGAGGTTCCAAGGAAACAGTAGAAATGATCAAGATAAAACATTGGAAGAGTTTGAAGAAGCAAGTGATAGCAGCTATGTGGGGAGGAAAGTAAGGAATTGGAAACACTTCAAAGGAGTGCATATGCAGTATACAGAGATAGTGAACACAATTAATAGAGAAATGGGTGAAACAATATAATGTTCAATAATACAAAAAAGCCAAGTAGGTGTAGTCGTTTTTTGGCAAAATTATGTAATTACATGTTTTTACTTTTCCTCAATATGTTGAGGTTTGGATGATTATAAGTCTCTTTTATGGTTTTTATGTTAATAATAATCACATTGGTTGCCAAAATACTTGAAGTTTTCTTTCAACCATCAGATGAAATCGTCTTGGTCACCATTTTATAGTCCCAACTTTGAAATGCGTCTTTTGAATATCTATAGATATAGTTTGACCCTTCATCTCACCTACTCTTACTAGAGGTTTTTTCCTCATTTTGTAGTTAAATCTTTCGAAGTTACAAATCTACCAGTTAATTTAACTATAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCGGCACTTCTTTGTTATTTCCTCAAGAAGGTTAGCTAACCATATTGTTACCTTCCTTTCCTTCAATCTGTCTTCTCAATATCTACAGCTATAGTTAGCTGCTTCAGCTCAACTACTCTTACTAAAGTTATTTTCCACATTATGTAGTTGAAGCTTCTGAAGCTTTAAACCTACCAGTTACTTCAACTAGAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAGGTCAGTTCAGAAATATTACTTAAACTATTTTGACTATATTGATTTTTAATAATTGGCTAACTGTGTCTAAATATTTTTATTCCTGATACTAGGATCAACGTCGAGTGCATCTTATGCTGCAAGTAGATCAAGTTCAAGTCGTACTTCAAATAGAGGTATGCTTCTCTCTACCATAGTAAAAAAACACTATATGCCTTTATGTAACAAATAATTGCTTTTTACCATGCACAGGTAGAAAT</genome_strand>
        <mrna_strand>GAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTGAGTCAAAAAGGCAAACACTCCTTCATCAATCAAATACTACTTGCGCTCTTAGAATTATTAGTTCTTCATTATCTCCTCAGGAAG....................................................................................................TTGAAGCTTCTGAAGCCACAAACCTACCAGTTACTTTAACTACAGGACAGCATCAATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGCTTTCGAAGTTACAAACCTACCAGTTAATTCAACTACAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCAGCACTTCTTCGTTATCTCCTCGAGAAG.....................................................................................................................TTGAAGCTTCTAAAGCTATAAACCTACCAGTTACTTCAACTAAAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAA............................................................................................GATCAACGTCGGGTGCATCTCATGCTGCAAGCAGATCAAGTTCAAGACGTACTTCAAATAGAG............................................................................CAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481783" ref_strand="+" ref_description="SGN-E481783 [cSTD-19-D7]">
      <seq>gcctttcccctgcatccacattgttgtcatcgaaactccactaactacatctttccttctccggcggtaaccatgcaagctatccaatcttcatctctccggccatctccggtcgacccatttctcaaaaccataccccacttcaccaatgtaaagccattgagacccaaaagaaccccttttatctcagcttcatccactacagtttcagctccgacaagggaaaaagaccccaaaaagcgtgttgttctaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="56384" stop="55536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56090" g_stop="55835" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E481783" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56090" e_stop="55835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTT-CC-TGCATCCACATTGTTGTCATCGAAATTCCACCATCTACATCTTTCCTTCTCCGCCGGTAACCATGCAACCTATCCAATCTTCATCTCTCCGGCCATCTCCGGTTGACCCATTTCTCAAAACCATACCCCAATTCACCAATGTAAAGCCATTGAGACCCAAAAGAACCCCTTTTATCTCAGCTTCATCCACTACAGTTTCAGCCTCATCAAGGGAAACAGACCCCAAAAAGCGTGTTGTTATAACTGGC</genome_strand>
        <mrna_strand>GCCTTTCCCCTGCATCCACATTGTTGTCATCGAAACTCCACTAACTACATCTTTCCTTCTCCGGCGGTAACCATGCAAGCTATCCAATCTTCATCTCTCCGGCCATCTCCGGTCGACCCATTTCTCAAAACCATACCCCACTTCACCAATGTAAAGCCATTGAGACCCAAAAGAACCCCTTTTATCTCAGCTTCATCCACTACAGTTTCAGCTCCGACAAGGGAAAAAGACCCCAAAAAGCGTGTTGTTCTAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="82354" stop="83668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82653" g_stop="83368" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82653" e_stop="83368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATG-TTTTCATAGTAAACTCTTAATAGAGAATGATATATATTGATAGTATTGTAAACCCTGATATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTATTTTTAATGATTATGCCTTAGTAAGGGAGAAGGCTTGATGAAC-CTTTTGATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAAATTTAGGGGATCGG-GTGTCACGAACCGACACGTAGATTTAGAGGATCCAAGTGTCACATACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGAGGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="83297" stop="84614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83597" g_stop="84314" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83597" e_stop="84314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCCTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTTTAGCTTTTAGAATACTCTTAGTTTGGTCATTCGATCGTAGGTGTTCTTTTGAAGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATTAATTGGTCTTTATTTAATGAGTTTAAGTCTTACGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTTTGATTGGTTGGTTCGCTCATATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGTTTGGGTCGTGACAAACTTGGTATCATAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTTTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTTAGGAAAATTCCATTCCTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGAGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA--TTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA----TTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="85411" stop="84092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85111" g_stop="84392" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85111" e_stop="84392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAAAACAGTTGAGTGGCATACCGGGATAATGCACGAAATTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACGAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTACAATGAGTCATCCATACGAGTAGCCATAGTGGCTGCATGTTGTACCTCTAAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCGGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCAATTGTTTCTTTTCCCCAT-CCTCCCATTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="85408" stop="84145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85108" g_stop="84445" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85108" e_stop="84445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAAAACAGTTGAGTGGCATACCGGGATAATGCACGAAATTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACGAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTACAATGAGTCATCCATACGAGTAGCCATAGTGGCTGCATGTTGTACCTCTAAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCGGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCA-ATCCCTCATTCTGCAATTGTTTCTTTTCCCCATCCTCCCATTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="86048" stop="84659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85748" g_stop="84959" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85748" e_stop="84959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATCTAGTGGCTCCAGTTTGCCTATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCTCTCCAGAAAAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCAGTAACTCTATTTTGGACAATTTCTCATAATATGTCCAGTCTCCCCATATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGAAGAAGTGTTCACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGTACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACATTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGACGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGTGGACTGAAAAACAGTTGAGTGGCATACCGGGATAATGCACGAAATTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTTGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="85972" stop="84675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85672" g_stop="84975" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85672" e_stop="84975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATCTAGTGGCTCCAGTTTGCCTATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCTCTCCAGAAAAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCAGTAACTCTATTTTGGACAATTTCTCATAATATGTCCAGTCTCCCCATATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGAAGAAGTGTTCACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGTACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACATTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGACGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGTGGACTGAAAAACAGTTGAGTGGCATACCGGGATAATGCACGAAATTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="86132" stop="84974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85832" g_stop="85274" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85832" e_stop="85274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATCTAGTGGCTCCAGTTTGCCTATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCTCTCCAGAAAAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCAGTAACTCTATTTTGGACAATTTCTCATAATATGTCCAGTCTCCCCATATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGAAGAAGTGTTCACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGTACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="86742" stop="85381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86442" g_stop="85681" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86442" e_stop="85681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTAGAAGTTGGGCTTTTAACTATCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGTTGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACACTCCCACACTAACGGATATGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACCATTTCTAAGATAACCAAGTCTACATATGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGAT-CCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="86339" stop="85409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86039" g_stop="85709" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86039" e_stop="85709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACCATTTCTAAGATAACCAAGTCTACATATGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="86742" stop="85482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86442" g_stop="85782" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86442" e_stop="85782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTAGAAGTTGGGCTTTTAACTATCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGTTGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACACTCCCACACTAACGGATATGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACCATTTCTAAGATAACCAAGTCTACATATGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="87260" stop="85982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86960" g_stop="86281" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86960" e_stop="86281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTATAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTAGAAGTTGGGCTTTTAACTATCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGTTGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="87331" stop="86053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87031" g_stop="86319" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87031" e_stop="86319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTATAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTAGAAGTTGGGCTTTTAACTATCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="87331" stop="86136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87031" g_stop="86436" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87031" e_stop="86436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTATAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="87331" stop="86206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87031" g_stop="86506" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87031" e_stop="86506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="87260" stop="86302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86960" g_stop="86602" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86960" e_stop="86602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="88812" stop="88035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88512" g_stop="88336" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88512" e_stop="88336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATTTCCTACCATACAACGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTTTATGAAAACTCCACTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCTACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="-" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="91099" stop="32437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90799" g_stop="90463" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90799" e_stop="90463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACCTCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096N24-e39hz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0096N24.1" temp_strand="+" temp_description="C04SLm0096N24.1  CU457752.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0096N24 sequenced_by:sanger upload_account_name:uk">
        <position start="90174" stop="91250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90474" g_stop="90950" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096N24.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096N24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90474" e_stop="90950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGAGGTTAATATACTAAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGATGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATATTTTCTTCTTG-TTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAAAATTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>38</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27809" PGL_stop="25716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27809" e_stop="27708"/>
            <exon e_start="27639" e_stop="27349"/>
            <exon e_start="25863" e_stop="25716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.638" e_score="0.912"/>
          <exon-intron don_prob="0.998" acc_prob="0.762" e_score="0.955"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="27809" e_stop="27708" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.638">
            <gDNA_intron_boundary i_start="27707" i_stop="27640" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="27639" e_stop="27349" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.762">
            <gDNA_intron_boundary i_start="27348" i_stop="25864" i_length="1485"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="25863" e_stop="25716" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27809" stop="27708"/>
              <exon start="27639" stop="27349"/>
              <exon start="25863" stop="25716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTACGGTACTGCTACAGTTACAGCATCTTTCTCTGGTGAACTGGGAGAAAAACTACTCTCCATGACAGCGGAAGACATATTTGACATAACCTGTGCTAAG : AGGCAATCATTGCATGTTAATCATGTCCATGAGATTTTGTCCAACAAACTATTTCAAATTCAGCTAAGGAAGTCATCTTGGGGTACCTCAAACAATACACAAGCAACTTACTCCATTATTTCCTACATGGAAAAGCAGCATACTTCTCCAACAACTATTGATAGGAATTCCAAAAAGATAAGATCTTTGGAGATAAGTGAGATGGAGGTGACAGAAACAACTACTACAGTTGGTTCTTCAAATGCAACTCTGAAATTTGAACCACCCACACCAACAAAAAAATTGTAAAAG : GAACTTCCTCACTTGATTTTGTGACTTTTGCTTAATGAAGTTTTTGGATTCCCAGTCGATTGAAGTTTGCTCAATAGGGAGAATGAAATGAATCAGTTAACTTTTTGTCCAGGAAATGAATCAGTTAATTTTTTGTGAAGCCTTCGTT</gDNA_template>
            <first_frame> T  Y  G  T  A  T  V  T  A  S  F  S  G  E  L  G  E  K  L  L  S  M  T  A  E  D  I  F  D  I  T  C  A  K  :  R  Q  S  L  H  V  N  H  V  H  E  I  L  S  N  K  L  F  Q  I  Q  L  R  K  S  S  W  G  T  S  N  N  T  Q  A  T  Y  S  I  I  S  Y  M  E  K  Q  H  T  S  P  T  T  I  D  R  N  S  K  K  I  R  S  L  E  I  S  E  M  E  V  T  E  T  T  T  T  V  G  S  S  N  A  T  L  K  F  E  P  P  T  P  T  K  K  L  *  K  :  E  L  P  H  L  I  L  *  L  L  L  N  E  V  F  G  F  P  V  D  *  S  L  L  N  R  E  N  E  M  N  Q  L  T  F  C  P  G  N  E  S  V  N  F  L  *  S  L  R  </first_frame>
            <second_frame>  P  T  V  L  L  Q  L  Q  H  L  S  L  V  N  W  E  K  N  Y  S  P  *  Q  R  K  T  Y  L  T  *  P  V  L  R :   G  N  H  C  M  L  I  M  S  M  R  F  C  P  T  N  Y  F  K  F  S  *  G  S  H  L  G  V  P  Q  T  I  H  K  Q  L  T  P  L  F  P  T  W  K  S  S  I  L  L  Q  Q  L  L  I  G  I  P  K  R  *  D  L  W  R  *  V  R  W  R  *  Q  K  Q  L  L  Q  L  V  L  Q  M  Q  L  *  N  L  N  H  P  H  Q  Q  K  N  C  K  R :   N  F  L  T  *  F  C  D  F  C  L  M  K  F  L  D  S  Q  S  I  E  V  C  S  I  G  R  M  K  *  I  S  *  L  F  V  Q  E  M  N  Q  L  I  F  C  E  A  F  V </second_frame>
            <third_frame>   L  R  Y  C  Y  S  Y  S  I  F  L  W  *  T  G  R  K  T  T  L  H  D  S  G  R  H  I  *  H  N  L  C  *   : E  A  I  I  A  C  *  S  C  P  *  D  F  V  Q  Q  T  I  S  N  S  A  K  E  V  I  L  G  Y  L  K  Q  Y  T  S  N  L  L  H  Y  F  L  H  G  K  A  A  Y  F  S  N  N  Y  *  *  E  F  Q  K  D  K  I  F  G  D  K  *  D  G  G  D  R  N  N  Y  Y  S  W  F  F  K  C  N  S  E  I  *  T  T  H  T  N  K  K  I  V  K   : G  T  S  S  L  D  F  V  T  F  A  *  *  S  F  W  I  P  S  R  L  K  F  A  Q  *  G  E  *  N  E  S  V  N  F  L  S  R  K  *  I  S  *  F  F  V  K  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27809" stop="27708"/>
                    <exon start="27639" stop="27352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYGTATVTASFSGELGEKLLSMTAEDIFDITCAKRQSLHVNHVHEILSNKLFQIQLRKSSWGTSNNTQATYSIISYMEKQHTSPTTIDRNSKKIRSLEISEMEVTETTTTVGSSNATLKFEPPTPTKKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="52349" PGL_stop="28694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41879" e_stop="40789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="41879" e_stop="40789" e_length="1091"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41879" stop="41402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41577" stop="40922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41496" stop="40833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41074" stop="40789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAACGGACATGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGCGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATAATTCCCAAATGAGTAAGGTGTTGAGGCTTGAGCCCTCATGGATGAACTTGATGGTACTTATTGATGATTATAATACTTGTTGTGGCTACATGTTGAGTTTTATAGTTGATTTACGATAATATTGATATATATTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTACAGCAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAAGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTACCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGGTATTAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAAAAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGTAATACGAATTAGTATCTGACCATCTTCACTCTCTTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACTAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACAAGGGCTGTGG</gDNA_template>
            <first_frame> H  E  R  T  C  R  Y  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  S  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  K  V  L  R  L  E  P  S  W  M  N  L  M  V  L  I  D  D  Y  N  T  C  C  G  Y  M  L  S  F  I  V  D  L  R  *  Y  *  Y  I  L  F  P  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  Y  S  K  T  C  H  R  L  Q  L  N  S  N  S  C  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  S  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  L  L  M  S  L  S  L  P  H  Y  F  L  L  L  L  H  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  W  Y  *  S  I  R  F  V  G  L  I  T  Q  E  K  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  V  I  R  I  S  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  K  G  C   </first_frame>
            <second_frame>  T  N  G  H  V  D  I  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  Q  A  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  I  I  P  K  *  V  R  C  *  G  L  S  P  H  G  *  T  *  W  Y  L  L  M  I  I  I  L  V  V  A  T  C  *  V  L  *  L  I  Y  D  N  I  D  I  Y  C  S  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  T  A  K  R  A  I  V  F  N  S  I  V  I  H  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  C  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  Y  *  *  V  *  V  F  R  I  I  F  C  C  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  Y  Q  S  Q  P  G  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  K  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  *  Y  E  L  V  S  D  H  L  H  S  L  S  R  M  V  R  T  R  A  T  T  A  P  T  L  T  S  A  R  Q  E  A  S  E  P  A  T  R  A  V  </second_frame>
            <third_frame>   R  T  D  M  *  I  *  G  I  G  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  K  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  *  G  V  E  A  *  A  L  M  D  E  L  D  G  T  Y  *  *  L  *  Y  L  L  W  L  H  V  E  F  Y  S  *  F  T  I  I  L  I  Y  I  V  P  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  N  V  P  S  S  S  T  Q  *  *  F  M  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  S  K  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  I  N  E  F  K  S  S  A  L  F  S  V  V  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  T  S  R  N  P  V  W  V  V  T  N  L  V  L  E  H  *  V  R  W  S  H  H  T  R  K  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  N  T  N  *  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  *  H  R  Q  D  K  K  R  L  S  Q  P  Q  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41536" stop="41312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLLCFLLVYLWSTAKRAIVFNSIVIHASLTTSEIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30298" e_stop="30251"/>
            <exon e_start="29877" e_stop="29702"/>
            <exon e_start="29568" e_stop="29283"/>
            <exon e_start="29190" e_stop="29100"/>
            <exon e_start="28979" e_stop="28846"/>
            <exon e_start="28772" e_stop="28694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.949" acc_prob="0.901" e_score="0.949"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="0.972"/>
          <exon-intron don_prob="0.983" acc_prob="0.166" e_score="0.967"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="0.948"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="30298" e_stop="30251" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30250" i_stop="29878" i_length="373"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="29877" e_stop="29702" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.901">
            <gDNA_intron_boundary i_start="29701" i_stop="29569" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="29568" e_stop="29283" e_length="286"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="29282" i_stop="29191" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="29190" e_stop="29100" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.166">
            <gDNA_intron_boundary i_start="29099" i_stop="28980" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="28979" e_stop="28846" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="28845" i_stop="28773" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="28772" e_stop="28694" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30298" stop="30251"/>
              <exon start="29877" stop="29702"/>
              <exon start="29568" stop="29283"/>
              <exon start="29190" stop="29100"/>
              <exon start="28979" stop="28846"/>
              <exon start="28772" stop="28694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGTCATCCTTTCCTGAATAAAAAAATATTGCTCTCTTTCTAAG : ATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGATTGAACTCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGAACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTCCAAAATTTGATTTTGGAAGATGAACAA : GAATGCCAAATAAAGGCAGTATTGTATGAAGATGAAATTGAACAGTATGCAGAAATGCATAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTATTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACGACCAACCAAGATGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCG : ATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAGTGTTGAGAAATTATCATTTGTGACAATCA : AAAAAATCAATTTCTCCTCACTCTATAGGAGGATTTTGGAGAAATTGAAGGAAATGAAATCGAAGCAAAAATGGAAAAAGAAATTGATCTTATTGTAATCATTGCCAGGAATATAGGAATCTCTGCTTTTCCAG : GGTTGTCACTGCAGAGTAGGTACAATTCAACAATACGCGTAGCTCCTAATTACCCACAGGCAGTAGAACTCACCAAATG</gDNA_template>
            <first_frame> K  L  V  I  L  S  *  I  K  K  Y  C  S  L  S  K  :  I  L  L  L  G  *  I  F  L  T  N  I  V  L  R  L  N  S  I  K  *  N  Q  Q  H  K  I  G  F  A  K  F  K  L  W  K  S  N  A  R  E  K  A  L  T  R  N  V  D  S  K  I  *  F  W  K  M  N  K :   N  A  K  *  R  Q  Y  C  M  K  M  K  L  N  S  M  Q  K  C  I  N  S  *  I  P  I  S  S  L  P  Q  E  S  K  S  P  K  L  H  T  A  S  R  Y  T  N  F  T  G  L  L  T  K  K  Q  *  L  N  I  S  H  H  L  M  E  L  R  I  H  F  H  D  Q  P  R  *  I  S  Q  P  L  T  A  F  L  T  *  C  L  I  L  L  L  K  S  :  I  Y  W  Q  S  F  S  V  V  V  L  K  N  T  Q  V  A  V  I  I  S  V  E  K  L  S  F  V  T  I   : K  K  I  N  F  S  S  L  Y  R  R  I  L  E  K  L  K  E  M  K  S  K  Q  K  W  K  K  K  L  I  L  L  *  S  L  P  G  I  *  E  S  L  L  F  Q  :  G  C  H  C  R  V  G  T  I  Q  Q  Y  A  *  L  L  I  T  H  R  Q  *  N  S  P  N  </first_frame>
            <second_frame>  N  L  S  S  F  P  E  *  K  N  I  A  L  F  L  R :   Y  Y  C  L  V  K  Y  F  *  Q  T  L  Y  *  D  *  T  R  S  N  R  I  N  N  T  R  L  D  L  Q  S  S  N  C  G  N  R  T  P  E  R  K  P  *  Q  E  M  *  I  P  K  F  D  F  G  R  *  T   : R  M  P  N  K  G  S  I  V  *  R  *  N  *  T  V  C  R  N  A  *  T  H  E  Y  L  S  H  L  Y  R  K  S  Q  N  L  P  N  F  T  R  Q  A  D  T  Q  I  L  L  G  Y  *  Q  R  N  S  N  *  T  Y  H  T  I  *  W  S  *  E  S  T  S  T  T  N  Q  D  E  Y  H  N  L  *  P  H  S  S  H  D  A  *  F  C  C  *  N  R :   Y  T  G  N  R  S  P  L  *  S  S  K  I  R  R  S  Q  *  S  *  V  L  R  N  Y  H  L  *  Q  S  :  K  K  S  I  S  P  H  S  I  G  G  F  W  R  N  *  R  K  *  N  R  S  K  N  G  K  R  N  *  S  Y  C  N  H  C  Q  E  Y  R  N  L  C  F  S  R :   V  V  T  A  E  *  V  Q  F  N  N  T  R  S  S  *  L  P  T  G  S  R  T  H  Q  M </second_frame>
            <third_frame>   T  C  H  P  F  L  N  K  K  I  L  L  S  F  *   : D  T  T  A  W  L  N  I  S  N  K  H  C  T  K  I  E  L  D  Q  I  E  S  T  T  Q  D  W  I  C  K  V  Q  I  V  E  I  E  R  P  R  E  S  P  D  K  K  C  R  F  Q  N  L  I  L  E  D  E  Q  :  E  C  Q  I  K  A  V  L  Y  E  D  E  I  E  Q  Y  A  E  M  H  K  L  M  N  T  Y  L  I  S  T  A  R  V  K  I  S  Q  T  S  H  G  K  P  I  H  K  F  Y  W  V  I  D  K  E  T  V  I  E  H  I  T  P  S  N  G  V  E  N  P  L  P  R  P  T  K  M  N  I  T  T  F  D  R  I  P  H  M  M  L  D  S  A  V  E  I   : D  I  L  A  I  V  L  R  C  S  P  Q  K  Y  A  G  R  S  N  H  K  C  *  E  I  I  I  C  D  N  Q :   K  N  Q  F  L  L  T  L  *  E  D  F  G  E  I  E  G  N  E  I  E  A  K  M  E  K  E  I  D  L  I  V  I  I  A  R  N  I  G  I  S  A  F  P   : G  L  S  L  Q  S  R  Y  N  S  T  I  R  V  A  P  N  Y  P  Q  A  V  E  L  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30251" stop="29702"/>
                    <exon start="29568" stop="29283"/>
                    <exon start="29190" stop="29123"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTTAWLNISNKHCTKIELDQIESTTQDWICKVQIVEIERPRESPDKKCRFQNLILEDEQECQIKAVLYEDEIEQYAEMHKLMNTYLISTARVKISQTSHGKPIHKFYWVIDKETVIEHITPSNGVENPLPRPTKMNITTFDRIPHMMLDSAVEIDILAIVLRCSPQKYAGRSNHKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="34325" e_stop="34150"/>
            <exon e_start="33900" e_stop="33792"/>
            <exon e_start="29877" e_stop="29702"/>
            <exon e_start="29568" e_stop="29283"/>
            <exon e_start="29190" e_stop="29100"/>
            <exon e_start="28979" e_stop="28954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.955"/>
          <exon-intron don_prob="0.977" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.949" acc_prob="0.901" e_score="0.949"/>
          <exon-intron don_prob="0.996" acc_prob="0.969" e_score="0.972"/>
          <exon-intron don_prob="0.983" acc_prob="0.166" e_score="0.967"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="34325" e_stop="34150" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="34149" i_stop="33901" i_length="249"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="33900" e_stop="33792" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33791" i_stop="29878" i_length="3914"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="29877" e_stop="29702" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.901">
            <gDNA_intron_boundary i_start="29701" i_stop="29569" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="29568" e_stop="29283" e_length="286"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.969">
            <gDNA_intron_boundary i_start="29282" i_stop="29191" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.967">
            <gDNA_exon_boundary e_start="29190" e_stop="29100" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.166">
            <gDNA_intron_boundary i_start="29099" i_stop="28980" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="28979" e_stop="28954" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34325" stop="34150"/>
              <exon start="33900" stop="33792"/>
              <exon start="29877" stop="29702"/>
              <exon start="29568" stop="29283"/>
              <exon start="29190" stop="29100"/>
              <exon start="28979" stop="28954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGATTTTCTTCTGTTCTTGGTTATGAAACTATTAAAATACATTTTTCTTTTCTGCAAAAGGATTTTTATTTGGATTGGGTCAAGGACAACCGCAAAATAACTCCGCAGGACTACCTTAAACTTGCATTGAAGCCAGTTCAAGGTGGTGAGAAAGATGTTGCTGCTAAAAATGAG : GAATCTGTCTTTTCTCAAAATCAATTCCACATGTTACATTATCTGTTTGCCCATACTCAGAACTTCACACTATTTACGCCCAACAACGATGGAGCTTAGTCTTGAAATA : ATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGATTGAACTCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTTCAAATTGTGGAAATCGAACGCCCGAGAGAAAGCCCTGACAAGAAATGTAGATTCCAAAATTTGATTTTGGAAGATGAACAA : GAATGCCAAATAAAGGCAGTATTGTATGAAGATGAAATTGAACAGTATGCAGAAATGCATAAACTCATGAATACCTATCTCATCTCTACCGCAAGAGTCAAAATCTCCCAAACTTCACACGGCAAGCCGATACACAAATTTTACTGGGTTATTGACAAAGAAACAGTAATTGAACATATCACACCATCTAATGGAGTTGAGAATCCACTTCCACGACCAACCAAGATGAATATCACAACCTTTGACCGCATTCCTCACATGATGCTTGATTCTGCTGTTGAAATCG : ATATACTGGCAATCGTTCTCCGTTGTAGTCCTCAAAAATACGCAGGTCGCAGTAATCATAAGTGTTGAGAAATTATCATTTGTGACAATCA : AAAAAATCAATTTCTCCTCACTCTAT</gDNA_template>
            <first_frame> V  D  F  L  L  F  L  V  M  K  L  L  K  Y  I  F  L  F  C  K  R  I  F  I  W  I  G  S  R  T  T  A  K  *  L  R  R  T  T  L  N  L  H  *  S  Q  F  K  V  V  R  K  M  L  L  L  K  M  R :   N  L  S  F  L  K  I  N  S  T  C  Y  I  I  C  L  P  I  L  R  T  S  H  Y  L  R  P  T  T  M  E  L  S  L  E  I  :  I  L  L  L  G  *  I  F  L  T  N  I  V  L  R  L  N  S  I  K  *  N  Q  Q  H  K  I  G  F  A  K  F  K  L  W  K  S  N  A  R  E  K  A  L  T  R  N  V  D  S  K  I  *  F  W  K  M  N  K :   N  A  K  *  R  Q  Y  C  M  K  M  K  L  N  S  M  Q  K  C  I  N  S  *  I  P  I  S  S  L  P  Q  E  S  K  S  P  K  L  H  T  A  S  R  Y  T  N  F  T  G  L  L  T  K  K  Q  *  L  N  I  S  H  H  L  M  E  L  R  I  H  F  H  D  Q  P  R  *  I  S  Q  P  L  T  A  F  L  T  *  C  L  I  L  L  L  K  S  :  I  Y  W  Q  S  F  S  V  V  V  L  K  N  T  Q  V  A  V  I  I  S  V  E  K  L  S  F  V  T  I   : K  K  I  N  F  S  S  L  Y </first_frame>
            <second_frame>  *  I  F  F  C  S  W  L  *  N  Y  *  N  T  F  F  F  S  A  K  G  F  L  F  G  L  G  Q  G  Q  P  Q  N  N  S  A  G  L  P  *  T  C  I  E  A  S  S  R  W  *  E  R  C  C  C  *  K  *   : G  I  C  L  F  S  K  S  I  P  H  V  T  L  S  V  C  P  Y  S  E  L  H  T  I  Y  A  Q  Q  R  W  S  L  V  L  K  * :   Y  Y  C  L  V  K  Y  F  *  Q  T  L  Y  *  D  *  T  R  S  N  R  I  N  N  T  R  L  D  L  Q  S  S  N  C  G  N  R  T  P  E  R  K  P  *  Q  E  M  *  I  P  K  F  D  F  G  R  *  T   : R  M  P  N  K  G  S  I  V  *  R  *  N  *  T  V  C  R  N  A  *  T  H  E  Y  L  S  H  L  Y  R  K  S  Q  N  L  P  N  F  T  R  Q  A  D  T  Q  I  L  L  G  Y  *  Q  R  N  S  N  *  T  Y  H  T  I  *  W  S  *  E  S  T  S  T  T  N  Q  D  E  Y  H  N  L  *  P  H  S  S  H  D  A  *  F  C  C  *  N  R :   Y  T  G  N  R  S  P  L  *  S  S  K  I  R  R  S  Q  *  S  *  V  L  R  N  Y  H  L  *  Q  S  :  K  K  S  I  S  P  H  S   </second_frame>
            <third_frame>   R  F  S  S  V  L  G  Y  E  T  I  K  I  H  F  S  F  L  Q  K  D  F  Y  L  D  W  V  K  D  N  R  K  I  T  P  Q  D  Y  L  K  L  A  L  K  P  V  Q  G  G  E  K  D  V  A  A  K  N  E  :  E  S  V  F  S  Q  N  Q  F  H  M  L  H  Y  L  F  A  H  T  Q  N  F  T  L  F  T  P  N  N  D  G  A  *  S  *  N   : N  T  T  A  W  L  N  I  S  N  K  H  C  T  K  I  E  L  D  Q  I  E  S  T  T  Q  D  W  I  C  K  V  Q  I  V  E  I  E  R  P  R  E  S  P  D  K  K  C  R  F  Q  N  L  I  L  E  D  E  Q  :  E  C  Q  I  K  A  V  L  Y  E  D  E  I  E  Q  Y  A  E  M  H  K  L  M  N  T  Y  L  I  S  T  A  R  V  K  I  S  Q  T  S  H  G  K  P  I  H  K  F  Y  W  V  I  D  K  E  T  V  I  E  H  I  T  P  S  N  G  V  E  N  P  L  P  R  P  T  K  M  N  I  T  T  F  D  R  I  P  H  M  M  L  D  S  A  V  E  I   : D  I  L  A  I  V  L  R  C  S  P  Q  K  Y  A  G  R  S  N  H  K  C  *  E  I  I  I  C  D  N  Q :   K  N  Q  F  L  L  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33795" stop="33792"/>
                    <exon start="29877" stop="29702"/>
                    <exon start="29568" stop="29283"/>
                    <exon start="29190" stop="29123"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNTTAWLNISNKHCTKIELDQIESTTQDWICKVQIVEIERPRESPDKKCRFQNLILEDEQECQIKAVLYEDEIEQYAEMHKLMNTYLISTARVKISQTSHGKPIHKFYWVIDKETVIEHITPSNGVENPLPRPTKMNITTFDRIPHMMLDSAVEIDILAIVLRCSPQKYAGRSNHKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34323" stop="34150"/>
                    <exon start="33900" stop="33802"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSSVLGYETIKIHFSFLQKDFYLDWVKDNRKITPQDYLKLALKPVQGGEKDVAAKNEESVFSQNQFHMLHYLFAHTQNFTLFTPNNDGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36948" e_stop="36552"/>
            <exon e_start="31605" e_stop="31485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.860"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="36948" e_stop="36552" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36551" i_stop="31606" i_length="4946"/>
          </intron>
          <exon e_serial="2" e_score="0.860">
            <gDNA_exon_boundary e_start="31605" e_stop="31485" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36948" stop="36552"/>
              <exon start="31605" stop="31485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGGCGGAATGAAAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTATGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATATTAATTTGGGGTAAAAGAAAGAGGGTTTTGAA : ACGAGACACCCTCGACGGTCCATCGTGCCCATGACGTTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAATTAAAATCTGCTGCTCAAAACGACTAAATAGGTCGTTACATGCT</gDNA_template>
            <first_frame> K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  L  W  R  N  E  R  T  D  R  H  R  C  D  G  P  S  Q  T  L  G  G  N  L  G  L  *  T  M  R  R  P  A  G  R  T  V  A  G  T  T  A  R  H  R  L  R  K  S  Q  A  E  S  D  F  L  T  R  F  K  G  R  L  G  L  F  F  P  *  L  *  I  S  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  F  G  V  K  E  R  G  F  *   : N  E  T  P  S  T  V  H  R  A  H  D  V  P  S  W  V  P  S  S  Q  P  V  F  P  E  L  K  S  A  A  Q  N  D  *  I  G  R  Y  M   </first_frame>
            <second_frame>  K  H  L  E  N  L  K  L  G  T  K  N  R  L  S  E  L  C  G  G  M  K  G  R  T  V  T  G  V  T  D  R  H  R  P  L  V  E  I  W  V  S  K  L  C  D  D  L  Q  D  G  P  S  Q  A  R  R  P  V  T  G  C  A  N  P  R  Q  N  R  I  S  L  H  V  L  R  D  V  W  D  Y  S  F  L  N  Y  R  F  R  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  A  I  F  Y  S  *  L  Y  I  N  L  G  *  K  K  E  G  F  E  :  T  R  H  P  R  R  S  I  V  P  M  T  F  R  R  G  F  R  R  L  S  L  F  F  Q  N  *  N  L  L  L  K  T  T  K  *  V  V  T  C  </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  A  E  *  K  D  G  P  S  Q  V  *  R  T  V  T  D  P  W  W  K  F  G  S  L  N  Y  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  Q  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  G  T  I  L  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  P  S  F  I  L  N  Y  I  L  I  W  G  K  R  K  R  V  L  K :   R  D  T  L  D  G  P  S  C  P  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  I  K  I  C  C  S  K  R  L  N  R  S  L  H  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36947" stop="36645"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLENLKLGTKNRLSELCGGMKGRTVTGVTDRHRPLVEIWVSKLCDDLQDGPSQARRPVTGCANPRQNRISLHVLRDVWDYSFLNYRFRGFILITQILGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="40715" e_stop="40162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="40715" e_stop="40162" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40715" stop="40162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCGTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAGCAAGTGCAGAATGAGGAACTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGGTCCAGAAGTACAACAGTCAACTGTTGCGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAAGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAGTTGAAATCTCCAGTCTTCAAGGTTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTGAAGGGAACACCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  A  S  A  E  *  G  T  T  T  P  T  Y  P  R  D  D  K  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  T  S  S  V  F  C  T  S  T  S  G  S  R  S  T  T  V  N  C  C  G  S  P  H  G  C  S  I  G  N  R  H  V  S  S  S  D  Y  K  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  V  E  I  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  *  R  E  H  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  R  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  G  P  E  V  Q  Q  S  T  V  A  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  R  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  S  P  V  F  K  V  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  E  G  N  T  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  V  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  S  K  C  R  M  R  N  Y  H  P  N  L  P  Q  R  *  *  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  Q  H  L  R  V  Q  K  Y  N  S  Q  L  L  R  L  P  A  W  M  F  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  S  *  N  L  Q  S  S  R  L  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  L  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40714" stop="40163"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTRPPTEEVVREGEEGETEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQGPEVQQSTVAAPRMDVPLEIGTFPRLTTRPIMTNDQHELFSKFLKLKSPVFKVAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFEGNTKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="50293" e_stop="50265"/>
            <exon e_start="45629" e_stop="45600"/>
            <exon e_start="44552" e_stop="44427"/>
            <exon e_start="44151" e_stop="44089"/>
            <exon e_start="41493" e_stop="41198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.992"/>
          <exon-intron don_prob="0.983" acc_prob="0.851" e_score="0.984"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50293" e_stop="50265" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.849">
            <gDNA_intron_boundary i_start="50264" i_stop="45630" i_length="4635"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45629" e_stop="45600" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45599" i_stop="44553" i_length="1047"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="44552" e_stop="44427" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44426" i_stop="44152" i_length="275"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="44151" e_stop="44089" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.851">
            <gDNA_intron_boundary i_start="44088" i_stop="41494" i_length="2595"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="41493" e_stop="41198" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50293" stop="50265"/>
              <exon start="45629" stop="45600"/>
              <exon start="44552" stop="44427"/>
              <exon start="44151" stop="44089"/>
              <exon start="41493" stop="41198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAGTTCAAGTCGTACTTCAAATAGAG : ATTATACAAGTGCAAATAAGTGATGATGAG : TTGTAGTGGTATTCTCCTAAGAGAGTAGAGAAATTTCAAGATTAAAATCTCTCATTAGGATTTTTTCCCATTTTCCATTTGTAACACTTGCCATGAGGTGACATGATTCAATAACAACTAACTCAG : TTACCCCAATGAATTCAACACCTGAAGCATTAGATGCACTGAACACTTATGGATGGTATATAG : CAAAACGTGCCATCGTCTTCAACTCAATAGTAATTCATGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTTAGTCATTTGATTGTAGATGTTCTTGTGATGATGACTTCCAAGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTATTAATGAGTTTAAGTCTTCCGCATT</gDNA_template>
            <first_frame> I  K  F  K  S  Y  F  K  *  R :   L  Y  K  C  K  *  V  M  M  S :   C  S  G  I  L  L  R  E  *  R  N  F  K  I  K  I  S  H  *  D  F  F  P  F  S  I  C  N  T  C  H  E  V  T  *  F  N  N  N  *  L  S :   Y  P  N  E  F  N  T  *  S  I  R  C  T  E  H  L  W  M  V  Y  S :   K  T  C  H  R  L  Q  L  N  S  N  S  C  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  S  F  G  N  N  R  C  *  I  L  I  V  I  E  L  V  L  L  M  S  L  S  L  P  H  </first_frame>
            <second_frame>  S  S  S  S  R  T  S  N  R   : D  Y  T  S  A  N  K  *  *  *   : V  V  V  V  F  S  *  E  S  R  E  I  S  R  L  K  S  L  I  R  I  F  S  H  F  P  F  V  T  L  A  M  R  *  H  D  S  I  T  T  N  S   : V  T  P  M  N  S  T  P  E  A  L  D  A  L  N  T  Y  G  W  Y  I   : A  K  R  A  I  V  F  N  S  I  V  I  H  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  C  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  Y  *  *  L  L  N  W  F  Y  *  *  V  *  V  F  R  I </second_frame>
            <third_frame>   Q  V  Q  V  V  L  Q  I  E  :  I  I  Q  V  Q  I  S  D  D  E  :  L  *  W  Y  S  P  K  R  V  E  K  F  Q  D  *  N  L  S  L  G  F  F  P  I  F  H  L  *  H  L  P  *  G  D  M  I  Q  *  Q  L  T  Q  :  L  P  Q  *  I  Q  H  L  K  H  *  M  H  *  T  L  M  D  G  I  *  :  Q  N  V  P  S  S  S  T  Q  *  *  F  M  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  F  S  H  L  I  V  D  V  L  V  M  M  T  S  K  F  W  E  *  *  M  L  N  I  D  S  Y  *  I  G  F  I  N  E  F  K  S  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44451" stop="44427"/>
                    <exon start="44151" stop="44089"/>
                    <exon start="41493" stop="41312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDSITTNSVTPMNSTPEALDALNTYGWYIAKRAIVFNSIVIHASLTTSEIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="52348" e_stop="52221"/>
            <exon e_start="52120" e_stop="52010"/>
            <exon e_start="50731" e_stop="50621"/>
            <exon e_start="50503" e_stop="50420"/>
            <exon e_start="50327" e_stop="50265"/>
            <exon e_start="50188" e_stop="50181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.885" e_score="0.914"/>
          <exon-intron don_prob="0.999" acc_prob="0.231" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.272" e_score="0.919"/>
          <exon-intron don_prob="0.626" acc_prob="0.973" e_score="0.952"/>
          <exon-intron don_prob="0.999" acc_prob="0.715" e_score="0.937"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="52348" e_stop="52221" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.885">
            <gDNA_intron_boundary i_start="52220" i_stop="52121" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="52120" e_stop="52010" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.231">
            <gDNA_intron_boundary i_start="52009" i_stop="50732" i_length="1278"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="50731" e_stop="50621" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.272">
            <gDNA_intron_boundary i_start="50620" i_stop="50504" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="50503" e_stop="50420" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.626" acc_prob="0.973">
            <gDNA_intron_boundary i_start="50419" i_stop="50328" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="50327" e_stop="50265" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.715">
            <gDNA_intron_boundary i_start="50264" i_stop="50189" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="50188" e_stop="50181" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52348" stop="52221"/>
              <exon start="52120" stop="52010"/>
              <exon start="50731" stop="50621"/>
              <exon start="50503" stop="50420"/>
              <exon start="50327" stop="50265"/>
              <exon start="50188" stop="50181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTAAGTCAAAAAGACAAAAACACCTTCATCAATCAAATACTACTGCCGCTCTTACAATCAGTAGTTCTTCATTATCGCCTCAAGAAG : TTGAAGCTTCTGAAGCCACAAGCCTACCAGTTACTTTAACTACAGGACATCATCGATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAACAAG : TTAAATCTTTCGAAGTTACAAATCTACCAGTTAATTTAACTATAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCGGCACTTCTTTGTTATTTCCTCAAGAAG : TTGAAGCTTCTGAAGCTTTAAACCTACCAGTTACTTCAACTAGAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAG : GATCAACGTCGAGTGCATCTTATGCTGCAAGTAGATCAAGTTCAAGTCGTACTTCAAATAGAG : GTAGAAAT</gDNA_template>
            <first_frame> E  K  A  I  I  F  I  R  A  K  R  K  K  G  *  V  K  K  T  K  T  P  S  S  I  K  Y  Y  C  R  S  Y  N  Q  *  F  F  I  I  A  S  R  S :   *  S  F  *  S  H  K  P  T  S  Y  F  N  Y  R  T  S  S  I  K  *  Y  W  R  P  Y  N  Q  H  F  F  V  I  S  S  T  S :   *  I  F  R  S  Y  K  S  T  S  *  F  N  Y  R  R  T  S  I  K  *  Y  W  R  P  Y  N  R  H  F  F  V  I  S  S  R  S :   *  S  F  *  S  F  K  P  T  S  Y  F  N  *  R  R  K  Y  S  *  L  L  I  Y  L  *  S  R :   I  N  V  E  C  I  L  C  C  K  *  I  K  F  K  S  Y  F  K  *  R :   *  K  </first_frame>
            <second_frame>  R  K  Q  L  F  L  S  E  L  R  E  K  R  A  K  S  K  R  Q  K  H  L  H  Q  S  N  T  T  A  A  L  T  I  S  S  S  S  L  S  P  Q  E   : V  E  A  S  E  A  T  S  L  P  V  T  L  T  T  G  H  H  R  S  N  S  T  G  A  L  T  I  N  T  S  S  L  S  P  Q  Q   : V  K  S  F  E  V  T  N  L  P  V  N  L  T  I  G  E  H  Q  L  N  S  T  G  A  L  T  I  G  T  S  L  L  F  P  Q  E   : V  E  A  S  E  A  L  N  L  P  V  T  S  T  R  G  E  S  I  V  N  C  L  S  T  F  E  V   : G  S  T  S  S  A  S  Y  A  A  S  R  S  S  S  S  R  T  S  N  R   : G  R  N </second_frame>
            <third_frame>   E  S  N  Y  F  Y  P  S  *  E  K  K  G  L  S  Q  K  D  K  N  T  F  I  N  Q  I  L  L  P  L  L  Q  S  V  V  L  H  Y  R  L  K  K  :  L  K  L  L  K  P  Q  A  Y  Q  L  L  *  L  Q  D  I  I  D  Q  I  V  L  A  P  L  Q  S  T  L  L  R  Y  L  L  N  K  :  L  N  L  S  K  L  Q  I  Y  Q  L  I  *  L  *  E  N  I  N  *  I  V  L  A  P  L  Q  S  A  L  L  C  Y  F  L  K  K  :  L  K  L  L  K  L  *  T  Y  Q  L  L  Q  L  E  E  K  V  *  L  I  A  Y  L  P  L  K  *  :  D  Q  R  R  V  H  L  M  L  Q  V  D  Q  V  Q  V  V  L  Q  I  E  :  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52347" stop="52221"/>
                    <exon start="52120" stop="52010"/>
                    <exon start="50731" stop="50621"/>
                    <exon start="50503" stop="50420"/>
                    <exon start="50327" stop="50265"/>
                    <exon start="50188" stop="50181"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQLFLSELREKRAKSKRQKHLHQSNTTAALTISSSSLSPQEVEASEATSLPVTLTTGHHRSNSTGALTINTSSLSPQQVKSFEVTNLPVNLTIGEHQLNSTGALTIGTSLLFPQEVEASEALNLPVTSTRGESIVNCLSTFEVGSTSSASYAASRSSSSRTSNRGRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="52349" e_stop="52221"/>
            <exon e_start="52120" e_stop="52010"/>
            <exon e_start="50731" e_stop="50621"/>
            <exon e_start="50503" e_stop="50420"/>
            <exon e_start="50327" e_stop="50265"/>
            <exon e_start="45728" e_stop="45600"/>
            <exon e_start="44151" e_stop="44089"/>
            <exon e_start="29877" e_stop="29783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.885" e_score="0.915"/>
          <exon-intron don_prob="0.999" acc_prob="0.231" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.272" e_score="0.919"/>
          <exon-intron don_prob="0.626" acc_prob="0.973" e_score="0.964"/>
          <exon-intron don_prob="0.999" acc_prob="0.644" e_score="0.937"/>
          <exon-intron don_prob="0.928" acc_prob="0.991" e_score="0.969"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.937"/>
          <exon-only e_score="0.811"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="52349" e_stop="52221" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.885">
            <gDNA_intron_boundary i_start="52220" i_stop="52121" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="52120" e_stop="52010" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.231">
            <gDNA_intron_boundary i_start="52009" i_stop="50732" i_length="1278"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="50731" e_stop="50621" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.272">
            <gDNA_intron_boundary i_start="50620" i_stop="50504" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="50503" e_stop="50420" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.626" acc_prob="0.973">
            <gDNA_intron_boundary i_start="50419" i_stop="50328" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.937">
            <gDNA_exon_boundary e_start="50327" e_stop="50265" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.644">
            <gDNA_intron_boundary i_start="50264" i_stop="45729" i_length="4536"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="45728" e_stop="45600" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.928" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45599" i_stop="44152" i_length="1448"/>
          </intron>
          <exon e_serial="7" e_score="0.937">
            <gDNA_exon_boundary e_start="44151" e_stop="44089" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44088" i_stop="29878" i_length="14211"/>
          </intron>
          <exon e_serial="8" e_score="0.811">
            <gDNA_exon_boundary e_start="29877" e_stop="29783" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52349" stop="52221"/>
              <exon start="52120" stop="52010"/>
              <exon start="50731" stop="50621"/>
              <exon start="50503" stop="50420"/>
              <exon start="50327" stop="50265"/>
              <exon start="45728" stop="45600"/>
              <exon start="44151" stop="44089"/>
              <exon start="29877" stop="29783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAGCAATTATTTTTATCCGAGCTAAGAGAAAAAAGGGCTAAGTCAAAAAGACAAAAACACCTTCATCAATCAAATACTACTGCCGCTCTTACAATCAGTAGTTCTTCATTATCGCCTCAAGAAG : TTGAAGCTTCTGAAGCCACAAGCCTACCAGTTACTTTAACTACAGGACATCATCGATCAAATAGTACTGGCGCCCTTACAATCAACACTTCTTCGTTATCTCCTCAACAAG : TTAAATCTTTCGAAGTTACAAATCTACCAGTTAATTTAACTATAGGAGAACATCAATTAAATAGTACTGGCGCCCTTACAATCGGCACTTCTTTGTTATTTCCTCAAGAAG : TTGAAGCTTCTGAAGCTTTAAACCTACCAGTTACTTCAACTAGAGGAGAAAGTATAGTTAATTGCTTATCTACCTTTGAAGTAG : GATCAACGTCGAGTGCATCTTATGCTGCAAGTAGATCAAGTTCAAGTCGTACTTCAAATAGAG : CAACAACTTTCCCTATAAGGGTAACTATTTTTGTAGTTCTAGATGAAGGAAATGACAGAGAAGAACTACCTCTTAATGCTTCAAATTTTCTTATTTCAGATTATACAAGTGCAAATAAGTGATGATGAG : TTACCCCAATGAATTCAACACCTGAAGCATTAGATGCACTGAACACTTATGGATGGTATATAG : ATACTACTGCTTGGTTAAATATTTCTAACAAACATTGTACTAAGATTGAACTCGATCAAATAGAATCAACAACACAAGATTGGATTTGCAAAGTT</gDNA_template>
            <first_frame> R  E  S  N  Y  F  Y  P  S  *  E  K  K  G  L  S  Q  K  D  K  N  T  F  I  N  Q  I  L  L  P  L  L  Q  S  V  V  L  H  Y  R  L  K  K  :  L  K  L  L  K  P  Q  A  Y  Q  L  L  *  L  Q  D  I  I  D  Q  I  V  L  A  P  L  Q  S  T  L  L  R  Y  L  L  N  K  :  L  N  L  S  K  L  Q  I  Y  Q  L  I  *  L  *  E  N  I  N  *  I  V  L  A  P  L  Q  S  A  L  L  C  Y  F  L  K  K  :  L  K  L  L  K  L  *  T  Y  Q  L  L  Q  L  E  E  K  V  *  L  I  A  Y  L  P  L  K  *  :  D  Q  R  R  V  H  L  M  L  Q  V  D  Q  V  Q  V  V  L  Q  I  E  :  Q  Q  L  S  L  *  G  *  L  F  L  *  F  *  M  K  E  M  T  E  K  N  Y  L  L  M  L  Q  I  F  L  F  Q  I  I  Q  V  Q  I  S  D  D  E  :  L  P  Q  *  I  Q  H  L  K  H  *  M  H  *  T  L  M  D  G  I  *  :  I  L  L  L  G  *  I  F  L  T  N  I  V  L  R  L  N  S  I  K  *  N  Q  Q  H  K  I  G  F  A  K   </first_frame>
            <second_frame>  E  K  A  I  I  F  I  R  A  K  R  K  K  G  *  V  K  K  T  K  T  P  S  S  I  K  Y  Y  C  R  S  Y  N  Q  *  F  F  I  I  A  S  R  S :   *  S  F  *  S  H  K  P  T  S  Y  F  N  Y  R  T  S  S  I  K  *  Y  W  R  P  Y  N  Q  H  F  F  V  I  S  S  T  S :   *  I  F  R  S  Y  K  S  T  S  *  F  N  Y  R  R  T  S  I  K  *  Y  W  R  P  Y  N  R  H  F  F  V  I  S  S  R  S :   *  S  F  *  S  F  K  P  T  S  Y  F  N  *  R  R  K  Y  S  *  L  L  I  Y  L  *  S  R :   I  N  V  E  C  I  L  C  C  K  *  I  K  F  K  S  Y  F  K  *  S :   N  N  F  P  Y  K  G  N  Y  F  C  S  S  R  *  R  K  *  Q  R  R  T  T  S  *  C  F  K  F  S  Y  F  R  L  Y  K  C  K  *  V  M  M  S :   Y  P  N  E  F  N  T  *  S  I  R  C  T  E  H  L  W  M  V  Y  R :   Y  Y  C  L  V  K  Y  F  *  Q  T  L  Y  *  D  *  T  R  S  N  R  I  N  N  T  R  L  D  L  Q  S  </second_frame>
            <third_frame>   R  K  Q  L  F  L  S  E  L  R  E  K  R  A  K  S  K  R  Q  K  H  L  H  Q  S  N  T  T  A  A  L  T  I  S  S  S  S  L  S  P  Q  E   : V  E  A  S  E  A  T  S  L  P  V  T  L  T  T  G  H  H  R  S  N  S  T  G  A  L  T  I  N  T  S  S  L  S  P  Q  Q   : V  K  S  F  E  V  T  N  L  P  V  N  L  T  I  G  E  H  Q  L  N  S  T  G  A  L  T  I  G  T  S  L  L  F  P  Q  E   : V  E  A  S  E  A  L  N  L  P  V  T  S  T  R  G  E  S  I  V  N  C  L  S  T  F  E  V   : G  S  T  S  S  A  S  Y  A  A  S  R  S  S  S  S  R  T  S  N  R   : A  T  T  F  P  I  R  V  T  I  F  V  V  L  D  E  G  N  D  R  E  E  L  P  L  N  A  S  N  F  L  I  S  D  Y  T  S  A  N  K  *  *  *   : V  T  P  M  N  S  T  P  E  A  L  D  A  L  N  T  Y  G  W  Y  I   : D  T  T  A  W  L  N  I  S  N  K  H  C  T  K  I  E  L  D  Q  I  E  S  T  T  Q  D  W  I  C  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52347" stop="52221"/>
                    <exon start="52120" stop="52010"/>
                    <exon start="50731" stop="50621"/>
                    <exon start="50503" stop="50420"/>
                    <exon start="50327" stop="50265"/>
                    <exon start="45728" stop="45607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQLFLSELREKRAKSKRQKHLHQSNTTAALTISSSSLSPQEVEASEATSLPVTLTTGHHRSNSTGALTINTSSLSPQQVKSFEVTNLPVNLTIGEHQLNSTGALTIGTSLLFPQEVEASEALNLPVTSTRGESIVNCLSTFEVGSTSSASYAASRSSSSRTSNRATTFPIRVTIFVVLDEGNDREELPLNASNFLISDYTSANK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32852" PGL_stop="33089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32852" e_stop="33089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="32852" e_stop="33089" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32852" stop="33089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTGATTGTTGATGATATAGTACTTGTTGTT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  D  C  *  *  Y  S  T  C  C  </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  D  D  I  V  L  V  V </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096N24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37706" PGL_stop="37882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37706" e_stop="37882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="37706" e_stop="37882" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37706" stop="37882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAATTGGCGCCATATCAATGCTTGAGTGATAGCTGTTATTGTATGAAAACTCCGCAAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATAGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  I  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  L  A  P  Y  Q  C  L  S  D  S  C  Y  C  M  K  T  P  Q  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  *  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  N  W  R  H  I  N  A  *  V  I  A  V  I  V  *  K  L  R  K  G  *  E  A  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  S  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096N24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="39187" PGL_stop="39900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39187" e_stop="39900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="39187" e_stop="39900" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39187" stop="39900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39187" stop="39782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39187" stop="39712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39258" stop="39885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39258" stop="39616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTATTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTTCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGATAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTGTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAATGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTTATAATGCCCATACCTTGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAACTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGTAGCACCCCAAAGAGATGCACTTGGTCTAATGAAGCATTTGCTCAACAACTCTTGAAGTTGGGCTTTTCACTCCCTCTACCTCTATCA</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  I  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  F  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  *  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  V  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  C  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  I  M  P  I  P  C  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  S  V  V  Y  A  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  K  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  S  L  P  L  P  L  S </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  L  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  S  S  L  E  T  T  F  P  K  K  D  T  A  S  S  Q  N  S  H  L  D  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  L  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  V  A  P  Q  R  D  A  L  G  L  M  K  H  L  L  N  N  S  *  S  W  A  F  H  S  L  Y  L  Y   </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  Y  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  S  P  R  R  T  L  H  L  A  K  T  H  T  *  I  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  C  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  M  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  Y  N  A  H  T  L  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  T  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  V  V  C  S  L  C  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  *  H  P  K  E  M  H  L  V  *  *  S  I  C  S  T  T  L  E  V  G  L  F  T  P  S  T  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39451" stop="39690"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHECSRGIRKTKRHHYKFIMPIPCSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39691" stop="39900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEQVINARKRILVLYGYLIQLSVVYAHSKTPILLLHKQNRSTPKRCTWSNEAFAQQLLKLGFSLPLPLS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39383" stop="39580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSLLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56090" PGL_stop="55835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56090" e_stop="55835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="56090" e_stop="55835" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56090" stop="55835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTCCTGCATCCACATTGTTGTCATCGAAATTCCACCATCTACATCTTTCCTTCTCCGCCGGTAACCATGCAACCTATCCAATCTTCATCTCTCCGGCCATCTCCGGTTGACCCATTTCTCAAAACCATACCCCAATTCACCAATGTAAAGCCATTGAGACCCAAAAGAACCCCTTTTATCTCAGCTTCATCCACTACAGTTTCAGCCTCATCAAGGGAAACAGACCCCAAAAAGCGTGTTGTTATAACTGGC</gDNA_template>
            <first_frame> A  F  P  A  S  T  L  L  S  S  K  F  H  H  L  H  L  S  F  S  A  G  N  H  A  T  Y  P  I  F  I  S  P  A  I  S  G  *  P  I  S  Q  N  H  T  P  I  H  Q  C  K  A  I  E  T  Q  K  N  P  F  Y  L  S  F  I  H  Y  S  F  S  L  I  K  G  N  R  P  Q  K  A  C  C  Y  N  W  </first_frame>
            <second_frame>  P  F  L  H  P  H  C  C  H  R  N  S  T  I  Y  I  F  P  S  P  P  V  T  M  Q  P  I  Q  S  S  S  L  R  P  S  P  V  D  P  F  L  K  T  I  P  Q  F  T  N  V  K  P  L  R  P  K  R  T  P  F  I  S  A  S  S  T  T  V  S  A  S  S  R  E  T  D  P  K  K  R  V  V  I  T  G </second_frame>
            <third_frame>   L  S  C  I  H  I  V  V  I  E  I  P  P  S  T  S  F  L  L  R  R  *  P  C  N  L  S  N  L  H  L  S  G  H  L  R  L  T  H  F  S  K  P  Y  P  N  S  P  M  *  S  H  *  D  P  K  E  P  L  L  S  Q  L  H  P  L  Q  F  Q  P  H  Q  G  K  Q  T  P  K  S  V  L  L  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56089" stop="55835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLHPHCCHRNSTIYIFPSPPVTMQPIQSSSLRPSPVDPFLKTIPQFTNVKPLRPKRTPFISASSTTVSASSRETDPKKRVVITG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="82653" PGL_stop="83368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82653" e_stop="83368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="82653" e_stop="83368" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82653" stop="83368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGTTTTCATAGTAAACTCTTAATAGAGAATGATATATATTGATAGTATTGTAAACCCTGATATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTATTTTTAATGATTATGCCTTAGTAAGGGAGAAGGCTTGATGAACCTTTTGATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAAATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGAGGATCCAAGTGTCACATACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGAGGTTAATATACTCAATCTAATGAACATGA</gDNA_template>
            <first_frame> N  S  S  V  E  V  G  Y  G  F  H  V  F  I  V  N  S  *  *  R  M  I  Y  I  D  S  I  V  N  P  D  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  I  M  P  *  *  G  R  R  L  D  E  P  F  D  E  I  D  D  A  L  V  R  E  K  A  *  *  V  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  K  C  H  I  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  E  R  G  *  Y  T  Q  S  N  E  H   </first_frame>
            <second_frame>  I  L  R  W  R  *  V  M  V  F  M  F  S  *  *  T  L  N  R  E  *  Y  I  L  I  V  L  *  T  L  I  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  Y  F  *  *  L  C  L  S  K  G  E  G  L  M  N  L  L  M  R  L  M  M  P  W  *  G  R  R  L  D  E  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  M  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  K  F  R  G  S  G  V  T  N  R  H  V  D  L  E  D  P  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  E  V  N  I  L  N  L  M  N  M  </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  I  Y  *  *  Y  C  K  P  *  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  I  F  N  D  Y  A  L  V  R  E  K  A  *  *  T  F  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  N  L  G  D  R  V  S  R  T  D  T  *  I  *  R  I  Q  V  S  H  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  C  R  H  K  R  N  K  D  N  E  S  *  K  R  L  I  Y  S  I  *  *  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096N24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="83597" PGL_stop="84314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83597" e_stop="84314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="83597" e_stop="84314" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83597" stop="84314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCCTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTTTAGCTTTTAGAATACTCTTAGTTTGGTCATTCGATCGTAGGTGTTCTTTTGAAGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATTAATTGGTCTTTATTTAATGAGTTTAAGTCTTACGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTTTGATTGGTTGGTTCGCTCATATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGTTTGGGTCGTGACAAACTTGGTATCATAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTTTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTAAGAGGCTATAAGACTTTAGGAAAATTCCATTCCTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGAGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  L  A  F  R  I  L  L  V  W  S  F  D  R  R  C  S  F  E  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  *  L  V  F  I  *  *  V  *  V  L  R  I  T  F  C  *  Y  Y  I  E  M  L  R  F  *  L  V  G  S  L  I  *  E  G  K  C  G  C  Q  S  R  P  G  L  G  R  D  K  L  G  I  I  A  L  G  S  L  V  S  S  H  K  N  E  F  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  K  R  L  *  D  F  R  K  I  P  F  L  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  T  P  A  S  T  P  A  P  A  R  Q  G  A  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  F  *  L  L  E  Y  S  *  F  G  H  S  I  V  G  V  L  L  K  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  I  N  W  S  L  F  N  E  F  K  S  Y  A  L  L  S  V  D  I  I  L  K  C  *  G  F  D  W  L  V  R  S  Y  R  R  V  S  V  G  A  S  R  G  P  V  W  V  V  T  N  L  V  S  *  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  R  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  P  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  F  S  F  *  N  T  L  S  L  V  I  R  S  *  V  F  F  *  R  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  L  I  G  L  Y  L  M  S  L  S  L  T  H  Y  F  L  L  I  L  Y  *  N  V  K  V  L  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  F  G  S  *  Q  T  W  Y  H  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  P  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  Y  A  S  I  N  T  S  T  G  E  T  G  C  D  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84072" stop="84314"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRRDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="87031" PGL_stop="84392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87031" e_stop="84392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="87031" e_stop="84392" e_length="2640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87031" stop="86319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87031" stop="86436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87031" stop="86506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86442" stop="85681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86442" stop="85782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86039" stop="85709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85832" stop="85274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85748" stop="84959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85672" stop="84975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85111" stop="84392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85108" stop="84445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACCGTCTCGATTTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCAAACTTAGAGAACTTGGCATAATGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTATAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTAGAAGTTGGGCTTTTAACTATCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATCGAAATGGGTTGAGTACCCGGTTCAAGGTCAATACAGAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAAGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACACTCCCACACTAACGGATATGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCAGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCGACCATTTCTAAGATAACCAAGTCTACATATGTATTGCTCCCCACAAAAGTTACAAGACAAGACCTATACACCCTTTCAACTATTACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATAAGAAAATGTGGATCCGGGATCAAATAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCTGTTGCCCCTACCATGTTGTGATCTAGTGGCTCCAGTTTGCCTATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCACCACGCTCTCCAGAAAAATGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCAGTAACTCTATTTTGGACAATTTCTCATAATATGTCCAGTCTCCCCATATCCGTAACACTCTCTGGAGTCAAGCATAGGTCTCTCGAAGAAGTGTTCACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGTACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACATTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGACGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGTGGACTGAAAAACAGTTGAGTGGCATACCGGGATAATGCACGAAATTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACGAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTACAATGAGTCATCCATACGAGTAGCCATAGTGGCTGCATGTTGTACCTCTAAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGGGCCTGACCCTGATCGGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGGGTAGGCTGGGGTGGCAATCCCTCATTCTGCAATTGTTTCTTTTCCCCATCCTCCCATTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  R  L  D  F  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  K  L  R  E  L  G  I  M  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  I  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  *  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  L  S  T  R  F  K  V  N  T  E  I  N  I  P  I  W  W  H  T  R  K  I  C  K  E  H  I  Q  K  L  A  D  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  Q  R  K  P  S  H  T  Q  N  Y  I  K  I  D  H  F  *  D  N  Q  V  Y  I  C  I  A  P  H  K  S  Y  K  T  R  P  I  H  P  F  N  Y  Y  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  R  K  C  G  S  G  I  K  *  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  S  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  S  S  T  T  T  L  S  R  K  M  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  L  F  W  T  I  S  H  N  M  S  S  L  P  I  S  V  T  L  S  G  V  K  H  R  S  L  E  E  V  F  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  H  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  *  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  K  Q  L  S  G  I  P  G  *  C  T  K  F  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  L  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  E  K  I  I  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  V  I  H  T  S  S  H  S  G  C  M  L  Y  L  *  N  W  R  C  W  C  R  K  H  W  R  G  L  T  L  I  G  Q  P  T  K  I  S  E  H  L  I  Y  H  L  W  G  R  L  G  W  Q  S  L  I  L  Q  L  F  L  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  N  L  E  N  L  A  *  C  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  R  S  W  A  F  N  Y  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  *  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  R  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  H  S  H  T  N  G  Y  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  Y  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  L  L  P  L  P  C  C  D  L  V  A  P  V  C  L  S  P  R  P  F  W  *  P  P  F  P  R  P  P  R  S  P  E  K  W  P  L  P  *  P  P  L  P  L  A  I  G  G  Q  *  L  Y  F  G  Q  F  L  I  I  C  P  V  S  P  Y  P  *  H  S  L  E  S  S  I  G  L  S  K  K  C  S  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  V  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  I  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  D  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  Q  R  I  R  S  C  G  L  K  N  S  *  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  W  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  Y  N  E  S  S  I  R  V  A  I  V  A  A  C  C  T  S  K  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  N  C  F  F  S  P  S  S  H  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  P  S  R  F  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  Q  T  *  R  T  W  H  N  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  Y  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  I  L  T  P  R  E  P  F  Y  K  G  V  S  K  W  V  E  Y  P  V  Q  G  Q  Y  R  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  T  P  T  L  T  D  M  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  R  P  F  L  R  *  P  S  L  H  M  Y  C  S  P  Q  K  L  Q  D  K  T  Y  T  P  F  Q  L  L  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  R  D  Q  I  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  C  C  P  Y  H  V  V  I  *  W  L  Q  F  A  Y  H  L  G  R  F  G  D  H  H  F  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  S  N  S  I  L  D  N  F  S  *  Y  V  Q  S  P  H  I  R  N  T  L  W  S  Q  A  *  V  S  R  R  S  V  H  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  Y  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  T  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  S  E  F  A  L  V  D  *  K  T  V  E  W  H  T  G  I  M  H  E  I  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  R  E  N  H  K  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  T  M  S  H  P  Y  E  *  P  *  W  L  H  V  V  P  L  K  L  E  V  L  V  Q  K  T  L  E  G  P  D  P  D  R  T  T  H  *  D  K  R  A  P  D  L  S  S  L  G  *  A  G  V  A  I  P  H  S  A  I  V  S  F  P  H  P  P  I  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86058" stop="85762"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHSHTNGYVPGLANVTVLALQSKIANCRESQVIPRITSKSTISKITKSTYVLLPTKVTRQDLYTLSTITDSPTGVETRIGMSSNSQCKLRPLANAEDT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85600" stop="85346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSGSSLPITSAVLVTTISSTTTLSRKMASTMTTSTSSYWGSVTLFWTISHNMSSLPISVTLSGVKHRSLEEVFTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86767" stop="86528"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86283" stop="86059"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPGSRSIQKSISLSGGIPGRSARNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86372" stop="86157"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCLTTLEVGLLTILTPREPFYKGVSKWVEYPVQGQYRNQYPYLVAYQEDLQGTHPKTRGLPKPTQSKVLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85290" stop="85078"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNIFDVDVVVKSSGFTPSTSITKSTTSWKDFAVDAICKAEIRNSDLNPFTNQRIRSCGLKNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84598" stop="84392"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWRCWCRKHWRGLTLIGQPTKISEHLIYHLWGRLGWQSLILQLFLFPILPFSYYLLSRWRSHCPSIRWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="88512" PGL_stop="88336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88512" e_stop="88336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="88512" e_stop="88336" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88512" stop="88336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATTTCCTACCATACAACGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTTTATGAAAACTCCACTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCTACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  F  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  F  Y  E  N  S  T  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  Y  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  T  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  F  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  F  P  T  I  Q  R  F  K  W  S  H  I  N  A  *  V  I  A  I  I  L  *  K  L  H  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  L  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096N24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90799" PGL_stop="90463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90799" e_stop="90463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="90799" e_stop="90463" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90799" stop="90463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCATCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACCTCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGCACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCTCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  I  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  L  V  Y  *  P  L  S  R  F  I  I  F  I  S  L  V  S  A  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  *  Y  I  N  L  F  Q  D  S  L  S  L  F  L  L  C  R  H  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  L  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  H  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  F  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  S  K  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096N24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="90474" PGL_stop="90950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90474" e_stop="90950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="90474" e_stop="90950" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90474" stop="90950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAACCGACACGTAGATTTAGAGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGAGGTTAATATACTAAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGATGGTAATTGTTAATGATATAGTGCTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATATTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAAAATTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  E  R  G  *  Y  T  K  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  M  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  I  F  F  L  L  F  V  E  C  S  K  R  A  I  V  F  N  S  K  L  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  T  N  R  H  V  D  L  E  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  E  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  W  *  L  L  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  N  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   R  T  D  T  *  I  *  R  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  C  R  H  K  R  N  K  D  N  E  S  *  K  R  L  I  Y  *  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  A  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  Y  F  L  L  V  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  K  I  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096N24.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90744" stop="90950"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYLVYIVFYFELADDIYSVPVFCTDPYFYIFFLLFVECSKRAIVFNSKLIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 289 chains have been computed
$ 
$ memory statistics:
$ 210272 bytes spliced alignments in total
$ 38 spliced alignments have been stored
$ 5533 bytes was the average size of a spliced alignment
$ 20072 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1672 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 331 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:46:33
-->
