<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:53:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324964" ref_strand="+" ref_description="SGN-U324964        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative [Arabidopsis thaliana] (TAIR:At1g20380.1); similar to putative prolyl endopeptidase [Oryza sativa (japonica cultivar-group)] (GB:NP_908392.1); similar to OTTHUMP00000040498 [Homo sapiens] (GB:CAH72545.1); similar to OSJNBa0084K11.14 [Oryza sativa (japonica cultivar-group)] (GB:XP_473492.1); similar to similar to Prolyl endopeptidase (Post-proline cleaving enzyme) (PE) [Gallus gallus] (GB:NP_001006410.1); similar to prolyl endopeptidase [Mus musculus] (GB:NP_035286.1); contains InterPro domain Prolyl oligopeptidase serine protease (S9A) (InterPro:IPR002470); contains InterPro domain Prolyl oligopeptidase (InterPro:IPR001375); contains InterPro domain Prolyl oligopeptidase, N-terminal beta-propeller domain (InterPro:IPR004106) | chr1:28576024-28579930 FORWARD | Aliases: T23E18.8, T23E18_8(evalue: 2e-149, score=525) genbank/nr: prolyl(evalue: 2e-147, score=525)">
      <seq>agtttcggggatttcagctcgtcgaaaagatgattccatttttattggattcatgaacttcttgatccctggattgatatatcagtgtaatctcaaaggtgaagttcctgaccttaaagtatttcgagaaatcgtcgtgcctggatttgatcggacggagtttcaagttaatcaggtattcgtgccaagtaaagatggtgtcaagatacctatgttcatagtgtctagaaagggtatttctcttgatggatgcaacccttgtttattatacggatacggaggattcaatgttagtattacaccacatttttctgctgctcgcgttgtgctcgcgaaacatttaggtgttgtgttttgcatagcaaatattcgtggtggcggagaatatggagaagagtggtataaaggtggtgctcttaacaaaaagcaaaattgctttgatgactttatttctgctgctgagtatcttgtatgtgctggttatacacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcagagacctgatctctttggctgtgctcttgctcatgttggtgttatggatatgcttagattccacaaattcactataggccatgcatggacctctgattttggttgttctgataaggaggaagaatttcagtggctaatcaagtattcaccactgcataatgtgagtaggccatgggaaaaatctgtcaatttagcatttgttcaatacccttccatcatgctattgactgcagatcatgatgatagagttgttccactgcactcattgaaactattggctaccatgcaatacgtcctgtgcacgagccaggagggaagtccccagaccaaccctatcgttggtaggatcgaacgtaaggctggtcatggatgtggacgtccaacacaaaaactcattgatgaagctgcagacagatatgcattcatggctaaagagttgggtgctgcttgggttgagtaaaattatgtttgtacaaaggtataatatggaaaatagtggaacacaaataaggtggtcggattttgatgtcctcacagttggtgcttcatcatccaataaaaggtatctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="9947" stop="13034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10247" g_stop="10421" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10422" i_stop="10811" i_length="390">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10812" g_stop="11192" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="556" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11699" i_length="507">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11700" g_stop="11775" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="632" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11776" i_stop="11876" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11877" g_stop="11940" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="696" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11941" i_stop="12063" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12064" g_stop="12202" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="835" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12203" i_stop="12296" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.300" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12297" g_stop="12410" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="949" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12411" i_stop="12555" i_length="145">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12556" g_stop="12734" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1128" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U324964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1128</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10247" e_stop="10421"/>
          <exon e_start="10812" e_stop="11192"/>
          <exon e_start="11700" e_stop="11775"/>
          <exon e_start="11877" e_stop="11940"/>
          <exon e_start="12064" e_stop="12202"/>
          <exon e_start="12297" e_stop="12410"/>
          <exon e_start="12556" e_stop="12734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAGGTGAATGAATTTTCGCACTTTATAGACAATTTATGTGATGCTTATGAGTAGCAAAAGTACCAAACCCGTATTTGTGTTAAAAATAAATCATGTATTCCTTACTTTTCAATTTGTTTGTCTGGTTTTGACTTAACACGTAGTTTCAGAGTTTAAGAAAGTAAATAAGATTGTTGAATCTTGTGGTCTTAAACTAATTTTATATAAAATATACCAAAATGCCTCTTGTAATCGTAAACATGTCTGAAATAGTGATTGCCTTGTTTGTTGTTGCATCCCTCTTTTCGTGTTGTTAAATCCAACTGATGTTACCACTCTGTAATACACTGGATTCAACAATGGAAAAAATTGTTTTTTGATCGATTCTTCTTGCGAACGGGGCTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATTAGTGGTACCCCGACCTCAGAGTTATCGTACAAAGAAGCCAAGGGATCAACATATATAGTAGATATACGTTATAAAAAAGACCTATATAAGTAGTGTAATTTTCCGGTGAAGGAATGTCTTGGATAACTGTAGCTCCGCCCCTGATTCTAGTACTGATAATTCAGTGTTAACTTCAAAAATGCAGAGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAGGTAAGTTTTTATATATATATATATATATATAAATTTATATTTTGCTACAATTTTGGTTATTGTTTGTGTGTAGTTACAATTTATTTTCCATTTCTCATTAGGCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAAGTAAGTTTACTATCCTCACTTAAAAAATTCCTCGGACTCTTTAAAAATATTGTCGGTTTTGCATTTTTGGGGGATCTGACACGTGCAACAACATCCAAGTTACTCATCTAATATTCTCTTCAGGTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCTGTAAGTTATTAGTTAGCAAAATCATGTTAAATATTATAAATTTACATTATCAGTACATAGAACTTAACTCCATCCATCGCGACATGCTCTGCAGACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTCGTAAGCTTCTCACCAATAACCATTTATTTTACAACCTGGAGGGCTCGGGTTGATAGTAGCCGTGGTAGCTATGCCCCGGTGAGCTCAATTAATGACCCGAGGTGCCGATTGGGAAAGTCTGAAACTTCATTAACTTGCATTGCAGATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</genome_strand>
        <mrna_strand>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................GTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAG.....................................................................................................GCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAA...........................................................................................................................GTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCT..............................................................................................ACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTC.................................................................................................................................................ATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338122" ref_strand="+" ref_description="SGN-U338122        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative [Arabidopsis thaliana] (TAIR:At1g20380.1); similar to putative prolyl endopeptidase [Oryza sativa (japonica cultivar-group)] (GB:NP_908392.1); similar to OTTHUMP00000040498 [Homo sapiens] (GB:CAH72545.1); similar to OSJNBa0084K11.14 [Oryza sativa (japonica cultivar-group)] (GB:XP_473492.1); similar to similar to Prolyl endopeptidase (Post-proline cleaving enzyme) (PE) [Gallus gallus] (GB:NP_001006410.1); similar to prolyl endopeptidase [Mus musculus] (GB:NP_035286.1); contains InterPro domain Prolyl oligopeptidase serine protease (S9A) (InterPro:IPR002470); contains InterPro domain Prolyl oligopeptidase (InterPro:IPR001375); contains InterPro domain Prolyl oligopeptidase, N-terminal beta-propeller domain (InterPro:IPR004106) | chr1:28576024-28579930 FORWARD | Aliases: T23E18.8, T23E18_8(evalue: 7e-51, score=197) genbank/nr: prolyl(evalue: 5e-49, score=197)">
      <seq>cttcatttgcaggtattcgtgccaagtaaagatggtgtcaagatacctatgttcatagtgtctagaaagggtatttctcttgatggatgcaacccttgtttattatacggatacggaggattcaatgttagtattacaccacatttttctgctgctcgcgttgtgctcgcgaaacatttaggtgttgtgttttgcatagcaaatattcgtggtggcggagaatatggagaagagtggtataaaggtggtgctcttaacaaaaagcaaaattgctttgatgactttatttctgctgctgagtatcttgtatgtgctggttatacacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcaggtatttcagatattcgttcaaaggatttaacttatatatacgctaatagtcttgttttatctgttgtaataggtaacattggatgttttgcaggttacgcattcatgtttgcaataaaatttacctgtagttgtcttttaggtgacctaaaagtgaataaaataaaattaggttcaatatgtctatttttgcttttgttgcattctagttagtggcggggagtcaagatttttaccaagggcattcaaaatcttaaaatacaggggatcatagaaacccgacacctgtatactggtatgaggtagcaagtacatcgtgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="10500" stop="11815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10800" g_stop="11515" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U338122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10800" e_stop="11515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</genome_strand>
        <mrna_strand>CTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320701" ref_strand="+" ref_description="SGN-U320701        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:7078889-7082537 REVERSE | Aliases: F5M15.23, F5M15_23(evalue: 3e-116, score=416) genbank/nr: gi|30686818|ref|NP_173466.2| expressed protein [Arabidopsis thaliana](evalue: 2e-114, score=416)">
      <seq>attcattttagttcaaagtagtgccgccagtcgcctaatttacctgatggcgggtgaagttgcggcggcggaggttatcggcgtcaagcacttgagttcggctgaagctgcggcggaggaggagaagctacgtcttctccgcgaagccgtccatgcgctgccagtgagcgccgtcaaagatttatggtccattggggcatgtgttcgatgcattttccgactatttggacttcatgaactcatgtgttcacatccttcactctcaatatcaaagtggtgtgatattttagaagatgtgatgagaaacaaagatggagaatttaatgagcaatcacatcaagaacgatcaagggagacaaacttttgcaaaatatgcttaggcattttgcaatttctctattatgatgatactggaactttattaaaaaagtatagtgccgatgactttgctgtagtaatttctgaacttgtaaagcaacaatatcaacaaattgatagtttttctcttgaagtctcattgccttcggttgtaacagaaaatgatcaagcagtttggttgtatatgaagaataagtaccgccatgaactttggttccaagagaaggctgaatgtcaattcatttctacaaaagacatcttcaaactattagtgataaatccattacaaagattgttgggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcattaacaagagatgacgttcaggaagggaatggaggaaataagaggaggaaaacagacaaaacaggtttcactggtgacctcaagacaactggggaatctgttactcctcatgttgagtcttttgatagtaatattgttgatggagatggactgactaaagtttgtcccaaggaggcccaagatctcagttgtaataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatcttagagctgtaggcagtcaagggtgggacctcatgcgtgaaggagaggcagagaagcagaagcagtacgctgcattggtgtggatttctcgtcctgtcagtgatgaagatttgcaaactatatcatcactaaaggaattgaaagttgctcaaaaaacgcctataagggttcttcatcgccgaagtccattggagagagagaaaattatacattggatgcaagtggagagggtatctggaagctcacaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="21360" stop="14383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21060" g_stop="20865" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19459" g_stop="19101" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="555" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18879" g_stop="18759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="676" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18497" g_stop="18383" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="791" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17733" g_stop="17570" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="955" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1027" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1096" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1097" r_stop="1177" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1178" r_stop="1297" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15943" g_stop="15869" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1298" r_stop="1372" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15754" g_stop="15674" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1453" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="14877" g_stop="14804" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1454" r_stop="1527" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="14721" g_stop="14683" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1528" r_stop="1566" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U320701" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21060" e_stop="20865"/>
          <exon e_start="19459" e_stop="19101"/>
          <exon e_start="18879" e_stop="18759"/>
          <exon e_start="18497" e_stop="18383"/>
          <exon e_start="17733" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15869"/>
          <exon e_start="15754" e_stop="15674"/>
          <exon e_start="14877" e_stop="14804"/>
          <exon e_start="14721" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGTGCGTTTGTTTTTTATTGATATTTTATAAAGCGATTAATTTTGTTTCTTAGAAAAGAGTTGAACTTTCTATGTTTTTGAGTTAGATTTCGTTATAAATTTAACTTGGTAGTTTTGTTTTTGAATGTTTAGTTTAATTCTGTGAAATAAAAACTTCAAATTTCTTGTAGTATCACATAGATATTCCTTTATTAGTACATTAGTGTATTCATTGAAACTATGGATTGTTTGGAGAAGAGAAAGAAAATGTCATGAAAGTGTTAGCTTTAGAGTTAATTCGAGCTAGAGTTCGTTCTACAAGCTTCTTCGAGATGTAATTAGATCATATACGATAGAAAGCTGAATCACTAGTAAAGAAATTGGGATGCAAAGTTTCTTAGTGAATCTTCATTTTCGTAGAGTAGGTTGGGTATGAAATGTACTGAGGTTCTAGAGTTCAAGTATCAGTTGATCATGTTATATGACATAGCAACTTTCAGCTTCAAGTCACAAAAAAAGAGCTATTTGAGTAAGTACATCATTTAAATTGGGAGATAAGGAGCTCTTACTACTGATTCCCTCTTTGTTATAGCAGGAGGATTTAAGCATGTCTTTTGATACTGTTACCATTATAAAAAAAAAGCATACGTCTTTTGATAAATTCCACATAAGCCCTCTCCTTTTATTTATTCACGGGATATCTTAGCTTCAAGGTGGGTTGACATAGTTGAACATTGCACTTTCTGGAAATGATGAGAGGAGCATTGAATTCTATACTTTCACATATATGATCATAAAAAGCTTTTGAGGACTACTTCTATAATCTATTTTACCTCCTGCTCCCCTCATCCACTGCAATCCACCCTGCCGCCAACGCATGCACTAACCTTTTGCATACCAGGGTGCATTCAGGTGCATGGGTCTTGGAAGGTGCTGCTTGTGGTTGGTAGAGAGGTTTGCAAGAACATTACGGGTGTAAAACTAAGTGATTGAATTTATTGATTTGTTTGCAAAATGACTAAAATGACTGAATTTTATGAACATTAATGTATTGGTGGACCAAAACTATATCTTCGCGTTAGTAAGAGTATTTTGTAAAAGTAGGTTTCTGGTGAATTAAGTCCATTTTTTGTAATTTCAAAGCCATGTCAAATGGCTTGTTGCACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTAAAGGTAATCTGATTATTGACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTGAAGGTAATCTGATTATTGACTATGGTCGGTCATCCATCTGTAATTAATTTGTCCAGTCAATGAGTAGAAGACATTTTCTATTAATTCTTAATCTAGCAACTCAAAGAACTTTTTTTTTTTAATTTTATTTTAGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTAAGATTTTAGAGTCTGATGAATTTCTTTATCAATTTCATTCACGTTGGATAGGAGGGTCAGATGCCCCTCCAAAATACTTATGCTAATTTTCTTTCTTCGATCTGAAACTTATACTTAGATTTTGTTGTTTTCCACCATTAACTTCCATATATATATATATATATATATGTATGTATGCCTTTCTTATTTGAATACCTTCCAATATATTTTGTTTTCAGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGCATGCTATCTTGTCAAAATGCTTTTTTCCCATTTGAGATTTTAAGTTTCTAGTGCTTGGTACCTTACCTGCTGTTTCTCATTACTGTGTCTCAACCCTTGAGACACTATCGGTGGTGATAGTTGTCTTGTGGGCAGGTAGGCATAGATAAGCATGCATTTTTCATTTTTCTCTTGTTTTGAACAATATTTAGTTTAATCATATGCCAGGATGATGTAAACAGATGATATTTCTGATGTTTTGACTGTTTACTCTATTAAGCTTACTTCAAAAAGTCTTCTGCTTTAGGTTTTTCCAGTTCTTTCCCTTGCCTATATTTAGTACCTCCAGCATATTCATCCTTTTATACTCATATTTTTCCTTCATATGCTGTCTCGAGAAAACTCTAGTATCAGTGTTCAAAGGAAGTAATTTGAAAACAAAAGGAAAATAGAAATCCATGAATTGCGACTTCTATGCTCCTGCATTTGAATATTGGATCTAATTGCTAAAGTGAAACAAGTATCCTCTCAGTACTCTTCATTTTATGATTGCCTGTGCTAACAAAGTTCCATTCTGTGCTCCATAATATCTGCTGGATCAAATGTTACTGGTTGTCATCCCATAGTTTATTTGGGTGCAATAGAAAGTATTGACTGATCGTTGTCAGACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGGTAAACCTCTGGCTATTTGAGCTAGTACTAGCTTATTTACCAGCCGATCTCTGCTTAAAAACATATTTATTTCCACCTATCTTTTCATAAGAAATTTCTTTCCATCCAATACAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGGTGAGTAATTCTCTATTTGGATTTACTGAAAAGAGTTTGAAGAATCCCTAATCGTTTGTGAAATTTTGCGATAAACCTATCACATATACATTCTTACATATATTAAGAGTGTGTTCGGTAGGATGGAAAATGTTTTAACTGGAAAATATTTTTCTAGGAAACTAAATGGGTTTCTTACTTATTTTCTTCGGTTTGGTACGTAAGCAAAAAATATCATCCTAAAAGCATTTGTATGTAATCAATGTGGAAGGGGGCTATGAGGGTGGGATGAAGATGAGATGTGTGGGAGGGTGGGTAGGCCACAATCAATGAGGAATGCTACTTGTGGAGCTTGTTTTCCTTACTTTCATTAGGGAGCTCATCTTCCTCATTTTTAAGGAGCTTATTTTCTAGAGAATGTTTTTCAAAAATTTTGACTAACCTAACATGTGAAAATTAGAAAATATGTTCTGAAAAGTGTTCTCGTCCGTACCGAATACACCCTAAAAGAATATATCAGAAATATATTGAAAAAACAACTAAGACCAAGATTACCTATTCTTTTTGCTTTGAAAAGAGTACATTTTATATTTTCATGGAGCACTAGCTTTTATTAACTGTTGGAGTGCCTGGCATGATTGTTCATATATCATATCCCCTCCTTTCAATTACGAGTGTTGAACTACTACTAAACATGGGAGTAGCATCAAATGTAGTTGTGTGTGATTTGATAATTTGTTAAGGGCTGATCCACTACCATCTTATCTAATAATATGTTTCATTATCTCTCCCCGTTTTTTGTTTCTCTGGGCTTCAGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTGGTATGAACAATTTCTAGCAACAGACTAACAACTATGGGTTTACTTTTATATCAATCGTGACTAGTGTTGTTTCTTGTGACAGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</genome_strand>
        <mrna_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG.............................................................................................................................................................................................................................GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAACAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG..................................................................................................................AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG..................................................................................GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313648" ref_strand="+" ref_description="SGN-U313648        Tomato 200607 #1 [71 ESTs aligned] arabidopsis/peptide: AT1G76160.1 | Symbol: SKS5 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr1:28582836-28586006 REVERSE | Aliases: T23E18.10, T23E18_10, SKS5 (evalue: 0, score=842) genbank/nr: gi|1944575|emb|CAB08077.1| pectinesterase [Lycopersicon esculentum] (evalue: 0, score=993)">
      <seq>cggccgaattgatagcaaattgcagtgctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26892" stop="21557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26581" g_stop="26407" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="190" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="300" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="571" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="674" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="1020" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1021" r_stop="1383" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1384" r_stop="1462" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22293" g_stop="21858" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1463" r_stop="1898" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1899" polyA_stop="1917"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U313648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1883</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26581" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</genome_strand>
        <mrna_strand>CAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334512" ref_strand="+" ref_description="SGN-U334512        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G76160.1 | Symbol: SKS5 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr1:28582836-28586006 REVERSE | Aliases: T23E18.10, T23E18_10, SKS5 (evalue: 1e-105, score=379) genbank/nr: gi|1944575|emb|CAB08077.1| pectinesterase [Lycopersicon esculentum] (evalue: 2e-129, score=465)">
      <seq>tgattaatggtcaattacctggtcctgatatcaacttagacaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacaaaagaaactcatttgtacatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaatgatcaaataaggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaagcctataatccccatcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttggaagcaattcttatcaatggacgtggtcctaatggtgttacattcacagtcgatcaaaggaaaacctatagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26591" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26291" g_stop="26189" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="374" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24031" i_stop="23499" i_length="533">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23498" g_stop="23435" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="438" r_length="64" r_score="0.844"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23338" g_stop="23322" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="455" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U334512" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26291" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23498" e_stop="23435"/>
          <exon e_start="23338" e_stop="23322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTG</genome_strand>
        <mrna_strand>TGATTAATGGTCAATTACCTGGTCCTGATATCAACTTAGACACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAAAAGAAACTCATTTGTACATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAATGATCAAATAAGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAAGCCTATAATCCCCATCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGAAGCAATTCTTATCAATGGACGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAA................................................................................................GGAAAACCTATAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343747" ref_strand="+" ref_description="SGN-U343747        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 3e-05, score=52)">
      <seq>gctggtttgtatagatctacattttaaaaacagaaaataataaaaaatgacatgtaaaattgaataaaaatgtctaccagttactaatcctggaggacatttttgttcaaagagcaaaaacagagtctagtttgatatttaggggtcccttttttctttttttgattccttctgattttagccgattcttgcgtcatttaaaataaaaaactttagtagtactagcgaataagtttaaaattgatgaactgtgtcatacatgttaacaacagttttgtatatttgatctaaaaattgaatgtttcggtgaccgcaaactatttcggtgcgtaaaaaaaaaacttatacaacataacagcaaatcccgtataattgcataaacaaaaatataataagtgaataacttaggaagagagcaattttctaaaaattctcaacaaaaactaggtagtattggaattattaattttgtggctttggtaagatttggacgacaagttgacaagttccacttgactattgctggcttctactgacaaagaattgagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26114" stop="24961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25814" g_stop="25261" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U343747" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25814" e_stop="25261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAA</genome_strand>
        <mrna_strand>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTGATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAGCAAATCCCGTATAATTGCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTAATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATTGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334513" ref_strand="+" ref_description="SGN-U334513        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G41830.1 | Symbol: SKS6 | multi-copper oxidase type I family protein, similar to pollen-specific BP10 protein (SP:Q00624)(Brassica napus); contains Pfam profile: PF00394 Multicopper oxidase | chr1:15606058-15610302 REVERSE | Aliases: F5A13.5, F5A13_5, SKS6 (evalue: 6e-24, score=108) genbank/nr: gi|1944575|emb|CAB08077.1| pectinesterase [Lycopersicon esculentum] (evalue: 6e-25, score=117)">
      <seq>aaagatttggctgcagaaccgtattaaccagacagatttgcccaaaccaatgcacttgccaattgtataacccagaaacaaactggaaattacccaaaaattattcctatgtagctatccttgtttttttggaaattgatacagttaagtttatcacgagtccatcaaatgtgattagtgatcttcaacgtaatcaacgcaacgcactaaatgtgaacagaaaaatggaagtttcagtgaattaccaggaaagtagaaaaggttcatccaagctgttgtggatattgataacgagattgtcattggtgaccgagttgatatcaggaccaggaaattgaccattaatcagaattccctatacaaacataacataaatttcaccgttacataagcatattgatctaataaacccagatccatatataatataaaaaaaaaatacattgcatttacagaaacgaacctgttgaggaactccgagaggatatatagttccataagtgacattccaatcgaaatatctataaggatcttctgctacaacagaattcccaattaataccactaaaaacaccgctacggcgaattttagcggcaacatatttttctactttactttatgttagcactgcaatttgctataataaggaaaacagagtggaaatagaaggattttaaaagaaaaaagagtgggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="25644" stop="26941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25944" g_stop="26641" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U334513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25944" e_stop="26641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</genome_strand>
        <mrna_strand>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322410" ref_strand="+" ref_description="SGN-U322410        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:7083186-7083825 REVERSE | Aliases: F5M15.30, F5M15_30(evalue: 4e-24, score=107) genbank/nr: gi|18394861|ref|NP_564113.1| expressed protein [Arabidopsis thaliana] gi|14596113|gb|AAK68784.1| Unknown protein [Arabidopsis thaliana] gi|18377466|gb|AAL66899.1| unknown protein [Arabidopsis thaliana](evalue: 3e-22, score=107)">
      <seq>ccggggtcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagttttttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggatttttggagacttcatctcgacctggagtgttaaatttgaagccttttatcttcagatatcttaatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34497" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34197" g_stop="33654" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U322410" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34197" e_stop="33654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGAT-TTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</genome_strand>
        <mrna_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322547" ref_strand="+" ref_description="SGN-U322547        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G42220.1 | Symbol: None | ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain | chr5:16889582-16894894 FORWARD | Aliases: K5J14.2, K5J14_2 (evalue: 7e-53, score=204) genbank/nr: gi|10177007|dbj|BAB10195.1| gene_id:K5J14.2~pir||T30561~similar to unknown protein [Arabidopsis thaliana](evalue: 1e-51, score=206)">
      <seq>tcgattgtggtgacccggatacccataaacccatctccgtttcagctggagctctggtggcgtcgcggctacaagccggataaataaattctagatccttctggaatgttataacgagctggcaaatattagattcgacccgatttcccctccggttcacatttcgtcattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgtgtagttgttgtttctgaagtcttcatggctgatcagcaagcagttgaagggtcaagtacaagtaatgattctggtggaagttctgaatcaaccgtggttctcaacatcaagaccttagattcccagacctatacttttaacgtggataagaatttgcaagtttcagccttgaaggacaaactagcaagtcagattggtgtacctgttgagcagcagagactaatttttaggggcaaggtcttgaaggataatcaccttctttctgaatattatgtggaaaatggggacacactacatttagtgctgaggcagtctcaattgcaagctccatcaggtggtagcagtggcgaagctactactaacaatgttaacagaggacaagagcctcaacccactgctggtggctcacggaatcgtatcgggcagatttcacacagtgttgtccttggaacttttaatgttggagatccgggggaaggacttgtgcctgatcttaatcgggttattggggcagttttgaacactgtagggatcgggaacatgaccggtggacagcttcctggtgtgcaggccagcactccagctcctcgccctcaaggaaatgagagtttaagtcagtcaggaagtcagcaatctgggcaggcattttctggtcaatctttgccgcaagtagtgcaaattcctctgggggcagcaatagctgttccctcaattaatttgccccttttggattccttgatcacgctttctgaattcatggacgggatggagcatgtattctcacagaatggttacccgccgaaccagtcacctaataatgcgggagatccacctgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37046" stop="44019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37346" g_stop="37596" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40983" g_stop="41135" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="404" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41456" g_stop="41573" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="522" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42527" g_stop="42631" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="627" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.462" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42744" g_stop="42868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="752" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42961" g_stop="43029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="821" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43283" g_stop="43432" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="971" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43524" g_stop="43593" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1041" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43594" i_stop="43670" i_length="77">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43671" g_stop="43719" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1090" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U322547" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37346" e_stop="37596"/>
          <exon e_start="40983" e_stop="41135"/>
          <exon e_start="41456" e_stop="41573"/>
          <exon e_start="42527" e_stop="42631"/>
          <exon e_start="42744" e_stop="42868"/>
          <exon e_start="42961" e_stop="43029"/>
          <exon e_start="43283" e_stop="43432"/>
          <exon e_start="43524" e_stop="43593"/>
          <exon e_start="43671" e_stop="43719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAAAGGTCTGATGCAATCGAGCAGTGCAGTAGCTAGTGGTGGACGCTTTCTGTGTGCTTGTGGCTGAAGTAGCATCAGATGGCTAGCTGGAATTTCTTTTTTGGGGAGATTATTCTGTGTGATACTTTTTTTACTGAACTTAAAGCTCTAGCTTCTGTATGACCTTACGTGTAGTGTCATTGAGGATTAGAACTTTGATTCAACTTTTGGATTTGAGATACTGGAATTTCATATGTATTGCGACCTAGCCAATGGAAGCTGTATTCATATTTATCACTTGGTCTTAGGCTTGATTCTGGGAACTGCTGTCCCATCACCATTTAGATATTGCAATTCCTCATAGCAGATCACTTATAAGATCAACAGGGCAGGTTCCATGGACTAAAAGATATTGTAGGAGCTCACAACGGTCCATTTGTAGGTTAGGCTATCTAGCCTGTAAACCATTGTTTAGATATGTCAATAACTCATAAATGAAGCCCCAGCTGAGACATAAATGTTGAACATTTACTTATAAAAAGATAAAAGTTGAACATTTAGAGATCATATAGAAAGTACCATTTCAAATGATTGTATTATGAATTTACTTGTCTTTGTTAAAGATCCATTGTTTCGTCTCTTGAGAAGCAATAAAAACAAGATTAAAGGAAACAAGTGCTAACAGTATTGAAAAGGAAAGCATAACTAAAGAAATTGCGTAATTTCTCTCTCAAAAAAGAAATTGCCGGCCATGGTTATAAATTGCAAACTTAAGCTGTATGGGCACATCATATGGTGTACCCTAGTTTCCAAACACAATTGGCATGTAGGATAAGATTTCACTGTCTTATGACCTGAATAAATTAATGTATAATATCTGCTGCTTTTTTCTTGACCTGTGAGAGTGAAAGTTGCGTTCAAGGGATTGCCTGGCCTTCACTGAAGTCCAAAACCAATTACAAATATGCTGACAGTTGAGCTATAGAAAAGTGTGTATGAAGTTACAACAATCAGTATGTTCTCTTAAAAAGCTATTGGTAAATGCCAAGAGAATCCCCATCTTCTATGGGTTTGGTTGAACAACAAAGGTTGTGAAATGTGGAATGCAAAATGTGCCAAGTTTTATATTTAAGTGGAGAAGAGCAGATGTACAAGCCCATTATCCCCAAATTTCTCGGTCACAAAAAAAAAAATTAACAATAGAGTCTACAGACAATGCCACTATATTTATTTCATTAGTCCTTTGTTTGTGGTTCTGTGCAATTCTACATATTTACTTGCCACAACTATGCCAACATTAACTTGACATGAGTGAAACAAGGATGCATCTTAAAAATTCAAGTGTTGTCTGCAATCAAAGGCAGAGTGGATTTTTAGATTTGAATGGAAACAAAATTATTCTTTTTAAAACATAATACATTTGAATGGAAATAAATGTTGGAGGAGGGAATGGGAGGGGGTGAGAGAAAAGTTGGTTAGTGGATTTTTCTTTTTTGACATGATCTCATGTAGGTTGAGGATTGATGTGCATCTCGGGTTTATGATTTTCCGGGCTTCAACGTTCCCTTGTTGCTGGCTTTACATCACTGATATTCTTACAGTACCTACAAAAAAAGATTTGGGCTTCACCTTGGTATTAAAGGATGTGCAAAACAATTCTTCTTTTCATTCATGATTTTGCCATCCTTGGTCATTTTTATATTATTCCAAATGGATTCGTTTCTAAATTGTTCGAGTTTTAGTTTATTTTGCTTCTTTTTTGAGGTGGGTGGGGGGTGAGGGTGCATGTGGGAGGGTAAGGTTTTTTTTTGCTGCTAATTATGCTTTGTTGAATATTCTATCTTTGCTGCTCATGAATCTATATGTGTGATTTGTGTATTGTTAACTTCTCAAAAAAAAAAAAAAAGAATGAATGATTTGCATATTGACGGGTCTAGGCCTTCATTTAAAATATGTGGGTGGATGGTCTACCTTCCTGCCAAGGAGTTTTGGTTTTGCAGTTGCTCCTTGGTGATAGTTTGTCTCAACTATTTTGCACAGTGCTCTATAAATGCTTACCATCCATCAGAGTTTTCTCTTCAGGTAGTTGTTGTTTCAGCAGAGTTTTCTCTGCAGGTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAATGTAAATTTTGTTACTTACTCTGTTTCTGTTGTGGGTTATGCTGAAAAAGAGTATTTACTACCATGCTTGTTCAGTTACATGCAGAGCTTTCTTAAATTTATGCTACTTCTGAAAAGTGATTTTTCCCCCTTTATTCTTGTTAGAAATAATATATTGAAACGTAGAGACCTTTTCTCGAATAAAAACTTATTGATATGAAGTTAAAATGTGGATTTTAGCACTTGGAGTCTTTTATCAATCACGTGCACTGTACTTCTCTGATACATCTCTTATTTGGAACTCATTGTCTACTTTACTTCTCTACCATGTCTCAATCTCAGTTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATTGTATCCTATCAACTGAGGATTTCAAGTTCCCCCCTCATTTTGTCTGCAGTTCGAGCACTCTATGCTGGAAATATTTCTTCTCTTTAAATTTGTTGGTCAGAGTTTTCTGTTAGATGTTTGTATATGTGTGTTTAGCTCCTTACATCTCTATTGAGGTAATTTCCAGGATTTCATCATTTCACATAAGCTTGTCCTACCTTTTCTGTTTCAAAACTGATAGCTGATTTTTAAATGCTTTGAAATTTTCTGAACTGATTCAGAAAGAAGCTCTAACTTGTGGTCATTGAGGGTGAAGTACACTGGAGTTCATGAGAATATACAAGTTTTGAACATAATTTGAAGTAGTTTTTCTTTAAACTGAAAACCCCTTCAAGTGAGATTACACAACTGCCACAAACCTGAACTGGGTCATAGTTTGAAACTCAGTTGATAATGAGCTCTCCCTCTACTCTCCGCTTAAATATTAGGCTTATTGTCTGCGGAAGGCCTCAAACGCATGACATATGCCTTATGTAGAAACCAAGAGTTGGGATGAATATAATGGAGAATTAGGTCTCTGTCTGCTTGTAATATTAATCTCCAGAGGGTAATACTTGTTGACTTTTGGTAATGCCACAAACCTAAATACCTCAAGATATCATATGCAACAAACCTAAATACCTCTAGATATCATATCTCGCTGATCCTTTACCCTGGTCATCTAGAAGGGTGTCCATGTTGGTTAGTAAGCTCAGTGAGTTGTTTCCAACTAACAAATGGATTGGTTTCTCACCTCTTAAGTCCTATCATGTCTATGATTAATTTTAGAGAGTTATCTTTGACCACCACATTAGTTGATACTTAAATGTTTTGTTTATACAACTTCACATGATTAGATGTAATATTTTCGCAAAAAATGGAGCCTCTTTCATCTTCAACTTTTGGGTTTCTTGCCAAAGCTTAACTCTTTCCAGATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAGGTAAAGGCTTCGTGATCTGAAATTTAGGCTCTCAGGTCATTTGGCTGATTTGTTAGTCAGAGGTGTAACAAAAAAGAGGTAACGAACAATTTATTATCTTTGAGTATCACAGGACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGGGTGGGTTGCATAGAAGTTGCAAGATTTTTTAATCACTGTTATTTGAGTTGATTTGGGAGAATCTTATAGCAGAAAAATATCCAACTTTATAGGTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAGGTTTTTTTCCCACCTTTTTATCTTATGTTTCGGATCTCTTAGGTTCACCTGCTACCTTTATATTTTACTGGAATTTCTCTCTATTGTGTCATTTGTGCGATGAGCCCTTTCAAGTTTCAAAGTTACAGGACTTTCACTTATATGGGACCTTTAATTTCACTTATGTTCACCTAGCAAGGTGCTGAGGAATTTCATTTACCATTGTTCATTGCTTCCTCGCTTATCTTTGCTTGGGGGGTTGGTTTGTGAACAGGCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTGGTAGAATGTCTTTCAGATATTATGTTTTTTCTGTCTCATGTTTTTCATGGCCATGTTTGATTCATTTATTTTTTTCTTTTTCATGTTGAAGCCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATGGTGGGGATTTTTATTGTTTTTGCTTTTTCTCTTCTGGTAAATGGATCTCTGAAAGACTTCGCATTCTCTTACCTCAGGTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</genome_strand>
        <mrna_strand>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT................................................................................................................................................................................................................................................................................................................................TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG................................................................................................................GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG............................................................................................GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG.............................................................................................................................................................................................................................................................GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTTCCCTCAATTAATTTG...........................................................................................CCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATG.............................................................................GTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337627" ref_strand="+" ref_description="SGN-U337627        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaatattagattcgacccgatttcccctccggttcacatttcgtcattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgttaagtagaatcattaaaggcatcaagaagatgcaagctttacaaggatagcttagtcgagctcacaaaaacaaggatttgtagcttcttcctaaactatagagctaagaatatccaagaagagttctaaattatttacaagggtcaatctggatcagctgaaaaggctaactacacatctgcttctcaaaagttttgtagaagttgaaattccatcaaaacattgtttcttccgtttgtccataaacaccaaaagagagcaccaggatcatcacccaaatagtcttgatggctttgtcaacttcccaagaactccaactttcaagagcattcctattagagaaaggcatgacccataaaacagcaaaactatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37169" stop="39191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37469" g_stop="37596" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38515" g_stop="38891" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="505" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U337627" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37469" e_stop="37596"/>
          <exon e_start="38515" e_stop="38891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</genome_strand>
        <mrna_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATTCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337626" ref_strand="+" ref_description="SGN-U337626        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctacccgatttccccttcggttcacatttcgtcattcagctagatctctggccaaagatgacgccattcactctccttggctccttccgatctcaatctccggtgaactcctgcgttaagtagaaccattaaaggcatcaagaagatgcaagctttacaaggatagcttagtcgagctcacaaaaacaaggattggtagcttcttcctaaactatagagctaagaatatccaagaagagatctaaattatttacaagggtcaatctggatcagctgaaaaggctaactacacatctgcttctcaaaagttttgtagaagttgaaattgcatcacaacattgtcccttgcgtttgtccataaacaccaaaagagagcaccacgatcatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37181" stop="39089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37481" g_stop="37596" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.733" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38515" g_stop="38789" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="391" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U337626" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37481" e_stop="37596"/>
          <exon e_start="38515" e_stop="38789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACC</genome_strand>
        <mrna_strand>CTACCCGATTTCCCCTTCGGTTCACATTTCGTCATTCAGCTAGATCTCTGGCCAAAGATGACGCCATTCACTCTCCTTGGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGAACCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTGGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGATCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTGCATCACAACATTGTCCCTTGCGTTTGTCCATAAACACCAAAAGAGAGCACCACGATCATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320804" ref_strand="+" ref_description="SGN-U320804        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT5G42220.1 | Symbol: None | ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin domain | chr5:16889582-16894894 FORWARD | Aliases: K5J14.2, K5J14_2 (evalue: 7e-71, score=265) genbank/nr: gi|10177007|dbj|BAB10195.1| gene_id:K5J14.2~pir||T30561~similar to unknown protein [Arabidopsis thaliana](evalue: 5e-69, score=265)">
      <seq>tgcctttctattagagcttggaaggacgatattgactctcagaatgggacaatcacctgctgaatcttcagtaaatgctggtcctgcagtttacatatcttccaccgggccgaaccccataatggttcagcctttcccccttcaaaccagttcactcttcggtaactcagctgctgttccacctaaccccggtacctttggcgctcttgggattggtaatgccccaaggcatgtcaatattcatatacatgcagcgcctattacttctgcagttggtgctagggcggccaatggagatggagcacacggtgaacgtggtaatggaactgattctggccaaacaagggttctgcctgttggaaatataatggctacagctgtggcaccaaggcctgctgttatctcagtctctagtatgccacagcctggccaatcagatggcccaagtggccaagagcgctctactgcgtctggtgctgagaatgatactgttagcactcaactagatgagacatctgcaagtgggatgactgtgcctgagcctctaccagcacacagtgttcccggaagagaggataaaatgagtgtaggtcaatcaagcgaaatgtctcatagtaagccagaagcttcagccagtgtaggaagagctcaaaggtctagtcaggagttaggtagtcctgatgaatcctcatctgtgccccttggattagggctcggaggtttgcagcctaagaaacgaactaagcaatctgtagctcatggaattaatgctgatggttcaagtagcagcaatccaaatgaactacctcaaagagatgagcgtcaatttttgcagtctcttgcagcgcttgcagccaggggaaatgagcctgctatgccttcaatgacacacttagataggggagttatggggactattggctcgggaaaccgaaatgttgatggccagtcagagatagcagatgcaatgtctagtgtccttcagagtcctgctttaaatggtttgttgagtggggtttcacaacaaactggggctggctctccggatctcttgaggaatatgatgcagcaattcactcaaagtccagcaatgatgaacactgtaagtcagattgcgcagcagattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaggtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactgcagtaagaggggcaacaccaaccactgaaaacgttcagattgatcttcatgaggttgcccaagaaatcgagaacaatagtccacctgtagagattcttcgttctttggttcaaagtacagaatctttgcatcaccatggaagtagcgatctaagtctggctgatgaactatccagtgaagagaacctagccgacgaattcatgcagatgctgcgtaatgatgtttctcagcgattcaaggataaagagggcaaatagggaatatacttaatttttcttctcattttctgatattatttctaaagaatgtcatcattttgggttctcaattagacagacagagacagctgatgtggggggaaaccattattatactattcccgtgtgtaatatgtacatacctatggaatagttaatccagtggatgggaactgtattttctatgtttaatcaaaacaatggtaccattttattctatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="45881" stop="49887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46181" g_stop="46238" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46239" i_stop="46320" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46321" g_stop="46392" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112">
            <donor d_prob="0.136" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46505" g_stop="46628" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="254" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46751" g_stop="46924" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="428" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47091" g_stop="47245" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="583" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47330" g_stop="47479" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="733" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48389" g_stop="48982" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="1327" r_length="594" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49066" g_stop="49221" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1328" r_stop="1483" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49303" g_stop="49593" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1484" r_stop="1775" r_length="292" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U320804" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46181" e_stop="46238"/>
          <exon e_start="46321" e_stop="46392"/>
          <exon e_start="46505" e_stop="46628"/>
          <exon e_start="46751" e_stop="46924"/>
          <exon e_start="47091" e_stop="47245"/>
          <exon e_start="47330" e_stop="47479"/>
          <exon e_start="48389" e_stop="48982"/>
          <exon e_start="49066" e_stop="49221"/>
          <exon e_start="49303" e_stop="49593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCTGTATGACTTTTCCCTTCTCTTATTGGTGTTTAAGCATTTTCTATTAGTGTTTCTCTTACAATTATTAAGCTGATATTTGCAGGCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAGGTTTGTTTGACAGATAAAAGTAGAGGGACTAGGCTAGGATTGCAATCTGAAAAATAGGTAGATGCTAGCTCCTTCTTTTTTTCTCATGACTTGTTGCTCTTCCTTGATGTAGCCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAGGTACGAAAAATATGCTAGTACATTATTCTGTATTTCGCTTATTGTTTTTCCTTATTTTCTTGTGGAGCATTGCAATAATTGGGAAGTAATGTAGTAACCTTTCTAACAATGGGTGCTTTTAGCGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTGGTATAGCGCCACAGATTTATGTCCTAAAATAATCTATTATCATATCTGAACTTTTTGCAGACTGAGAGCTTCTTGTTAACACGTGTAACGTCTGTACTTTTTAATTCGCTGATGATGATACAATACGGCGATATACTTTCTGAAGTGCTTTTTCTGTATCATGAAGGCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATGGTCAGTGCCAATAAAATGATTCCATGACCTATCTTTTTACCTCTAGTTTGACATTCTAGACCTAATTAAACTTGTAAATGCCAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAGGTAAGCAAGCTGTTTTGATGCTGCTTCCCAGATATATCTTTGATTATTAGATTTGCTGAAAGATGGAGTGGTAATAGAGTACCTTCCTTTTTTATTTCCAAATGTAGTGGGCTTTTTAGAAGGACATGTGCTAAGGAGTCATTTTCTGTTGGTACTAAATGAAATGATTTTGTCTGTGACATGTGATAAGGAGTCATTTTCTGTTGGTACAAAATGAAATGATTTTGTCTGCTGAGTTTTGTAGTGTTCATGTACCATTAAATGGTAGGTCAAATTTACTGTTTTACTTTCTTGAGTGCTCAATTTGTTTGTCCTTTTGTCTTGCCAATTGCTCATTCACCTTGCATTAGCATTCCCGCCCCTAAAGAGATTTTGGAAATTGAATTTTATAAGTAGTGATAAATAAGCTCCCCCTCCCTACGAGACTTATAGTCTAATGGTAAGACCGCAGCATATAATGTGTGGGTTTAAGCGCACATAACATGTTTGACAATAGCCTGGTAATTAAGCGGAGAAGGGTAGAGGGATATGCCCTTTCATTGTGTTTCAAACAGTACACTAATGGCCCTTGGGATTTCTCAGGGTTGGGTCAGTGAGTTTTAATTTCTTCTGCTGCCTTGTTTATCTTTTTCTTAACAGTGTCGAAAGAAATTGAGAGCTGGTTACTGCCCTTGTAATGATTTTTCCCTAAATCCTAAGCTACTATGTTGAATTAGTGTCTATGGTGGTTTGTCAGTTTGGTGCAATGTTATTGTTGATCTCATAACTGAAGAAAAAGTCAGATTTGTGAATGTTCCTTGGAATTGTTTTAACCTTTCACGTAGTGAACTTTCTGTTCCTTGTACTGCTTTTCCAACTTTTGGTCCTGGACTTGACATTCTTATTTCTATTGGTGGATCTGCAAATTAGAAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAGGTTTGTTCCTGTTAGCTATTTATTTTGTTAGAATGATGTATTTACAAAATTTAAGTTTTATGTATCAATTGCAATCTTTTCAGATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGACGTGAGTAGCTGGATTTGTGATTTGAGTTTGGTGTTTGTTAAGGGTATGCATGGGTCTTATGTTTCATTCTCATTCCTGCAGGAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGT-ATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAATGTGGG</genome_strand>
        <mrna_strand>TGCCTTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCT..................................................................................GCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAG................................................................................................................CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG..........................................................................................................................CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG......................................................................................................................................................................GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGAAGAGAGGATAAAATG....................................................................................AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG...................................................................................ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC.................................................................................GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGTAATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345313" ref_strand="+" ref_description="SGN-U345313        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | alcohol dehydrogenase, putative, similar to alcohol dehydrogenase ADH GI:7705214 from (Lycopersicon esculentum); contains Pfam zinc-binding dehydrogenase domain PF00107 | chr5:16911237-16914844 FORWARD | Aliases: K5J14.6, K5J14_6(evalue: 7e-33, score=137) genbank/nr: gi|7705215|gb|AAB33481.2| alcohol dehydrogenase  ADH [Lycopersicon esculentum](evalue: 1e-44, score=183)">
      <seq>tattttagcactttttgtaaatgttgctaaagcttgcggcgacaatttacataaaagccgctttaacattctttgctaatgtgtatatttattgccgctattgttgttatagtgctgtgatgaatccagatattttgaggactaaatcatcgaattgagtgtccctttgtcgaaaatactgtatatatcagctgcagtggcaagaaaagcaggagaaccactggtgatagaggaagtgattgtggctcctcctaaagcacatgaagttcggctcaaaatcatttgcacttctctctgtcataccgacattaccttatggaagttgaaagtatggaacttttatctcccccgagaatcgattgtttattaacttttgtatcaactatttcttgcttcttgtaaggaatttcctggctgctttccaagaatcttaggccatgaagctttcggggttgtggagagtgttggagaagatgttgatgagttgaaagaaggagattcagttgtaccgatatttttgcctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="50427" stop="51982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50727" g_stop="50917" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50918" i_stop="51254" i_length="337">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51255" g_stop="51513" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="450" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51514" i_stop="51604" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51605" g_stop="51682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="528" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U345313" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50727" e_stop="50917"/>
          <exon e_start="51255" e_stop="51513"/>
          <exon e_start="51605" e_stop="51682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAGGTCAATTCTGTATTTACTTTATATATGTAGATGATGAACACAGGTACTATGAGATCATATGGTTCCTACATTGAATATGAACAAGAACTGATCCTCACCTTGCATATGTAGAAAAAGGGTTCTTAGCATTTGTTGATTGGTAAAGGAACATGAAAACAATAGGAGGATTTATGATTGATAAAAAAATTGCTGCTTTCTGTGTTGAATTGTGAACCATTTCAATGGTTAGATTAAATTGTGTGACAGTTAGCAAATTGAGAGTGCAATGTTAATTACTTAATTATATTATGTCTCAACACGTTGTAAGTTACTGACTTGTGAGTCGTATGTGTTGCAGCTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGGGTAAATTTTACTCCTTCCATTTCATTTTATATGAACGTGTCACGAAATAAGGCATTGATTCATATATGACATTCTGACTATACTATCTAAGGGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</genome_strand>
        <mrna_strand>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAG.................................................................................................................................................................................................................................................................................................................................................CTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGG...........................................................................................GGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313320" ref_strand="+" ref_description="SGN-U313320        Tomato 200607 #1 [89 ESTs aligned] arabidopsis/peptide: | Symbol: None | dehydrin (ERD10), identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) (Arabidopsis thaliana) SWISS-PROT:P42759 | chr1:7087993-7089596 REVERSE | Aliases: F5M15.21, F5M15_21(evalue: 3e-10, score=63.2) genbank/nr: gi|2055384|gb|AAB53203.1| cold-stress inducible protein [Solanum tuberosum] (evalue: 3e-38, score=162)">
      <seq>tgtaattgctataaaaagggcgattggcggccaatcggccgaattgacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaaaaaaaaaaaaaaaaaattagttgtttcatttccaactctgttatatgaaaacgtattgttcaaaacatatcgagttattatatataaatgcaaatcttagagatattaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63159" stop="61253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="359" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61566" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="1080" r_length="721" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1081" polyA_stop="1098"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U313320" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1032</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGTTGTTTCATTTCCAACTCTGTTATATGAAAACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313321" ref_strand="-" ref_description="SGN-U313321        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | dehydrin (ERD14), identical to SP:P42763 Dehydrin ERD14 {Arabidopsis thaliana} | chr1:28591667-28592771 REVERSE | Aliases: T23E18.12, T23E18_12(evalue: 1e-09, score=60.1) genbank/nr: gi|38639308|gb|AAR25792.1| cold-stress inducible protein C17 [Solanum tuberosum](evalue: 2e-22, score=108)">
      <seq>aaaaaaaagaagggattaaaggataaaattaaggaaaaaatatctggtgttcccaaggaaaaatcaaaaacaaaggatacctcagttccagttgaggaaattcgaggaaacaaaggaaaaaaaaggatttttagacaaaattaaagaaaaattgccaggtggggggcataaaaaaacggaggaagtgggggcccccccccccccccccccggcttcggtggagcattaggcggaggggaaggaaaaaaagggatttttggacaaaattaaggagaaatttccaggatacccctcaaaggctgaaaaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgtaatgattgggtttttgggttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattttgaaggataattgttagtactgtatttgatatttttgtatgtaagggcatatgtatgtgccttatgggtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62538" stop="61375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62238" g_stop="61680" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="608"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U313321" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62238" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGA-GAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</genome_strand>
        <mrna_strand>AAAAAAAAGAAGGGATTAAAGGATAAAATTAAGGAAAAAATATCTGGTGTTCCCAAGGAAAAATCAAAAACAAAGGATACCTCAGTTCCAGTTGAGGAAATTCGAGGAAACAAAGGAAAAAAAAGGATTTTTAGACAAAATTAAAGAAAAATTGCCAGGTGGGGGGCATAAAAAAACGGAGGAAGTGGGGGCCCCCCCCCCCCCCCCCCCGGCTTCGGTGGAGCATTAGGCGGAGGGGAAGGAAAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTTCCAGGATACCCCTCAAAGGCTGAAAAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTAATGATTGGGTTTTTGGGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTTTGAAGGATAATTGTTAGTACTGTATTTGATATTTTTGTATGTAAGGGCATATGTATGTGCCTTATGGGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334272" ref_strand="+" ref_description="SGN-U334272        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dehydrin (ERD10), identical to dehydrin ERD10 (Low-temperature-induced protein LTI45) (Arabidopsis thaliana) SWISS-PROT:P42759 | chr1:7087993-7089596 REVERSE | Aliases: F5M15.21, F5M15_21(evalue: 2e-10, score=63.2) genbank/nr: gi|38639308|gb|AAR25792.1| cold-stress inducible protein C17 [Solanum tuberosum](evalue: 6e-27, score=124)">
      <seq>gaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaaccacaaggaggaggaaaagaaagaagagaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacttcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcggacataagaagacggaggaagtagcggcgccgccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaaaaagggatttttggacaaaattaaggagaaattaccagggtaccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaattaaatgaaatgtttttttaattttacttttgggatgttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62937" stop="61563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62637" g_stop="62503" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.807"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.56"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61863" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="572" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U334272" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62637" e_stop="62503"/>
          <exon e_start="62286" e_stop="61863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACC-CAAGGAGGAGG---A-AAAGAA-A-------CTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</genome_strand>
        <mrna_strand>GAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCACAAGGAGGAGGAAAAGAAAGAAGAGAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACTTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGACATAAGAAGACGGAGGAAGTAGCGGCGCCGCCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGGTACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATTAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313319" ref_strand="+" ref_description="SGN-U313319        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|2055384|gb|AAB53203.1| cold-stress inducible protein [Solanum tuberosum] (evalue: 5e-19, score=97.8)">
      <seq>atccaattcaatattcaaactttcacttgttgataatatctttttgattaaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccgtaagtctctctttcgttcatcattaatatttacgtcaaatcaataaatataacatacgccttttatgatgatacatatattatacttttacactatttgttttctcaacaaagagtcgagtaaatttaccgtttactttttctagcgggtatgaataaattataggtgatcattgatatgttgtacgtagattatatatgttgattgatttgcagagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataataagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggaccatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63113" stop="61712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62012" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U313319" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGA</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTAAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAATAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGACCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321179" ref_strand="+" ref_description="SGN-U321179        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28595219-28596412 FORWARD | Aliases: None(evalue: 2e-25, score=112) genbank/nr: gi|18411043|ref|NP_565127.1| expressed protein [Arabidopsis thaliana] gi|21592450|gb|AAM64401.1| unknown [Arabidopsis thaliana](evalue: 2e-23, score=112)">
      <seq>aaacaaatatctcaaaaatagttcaggtaagaaaatacaaaatttataatattccaaagaaaattaactggtatcgaatttcttctttacagcaagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagatacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgtcttttctttttttcttttctgaattccttttgacacaagtaattgtagtagaggcaagctgattaaatggtgctgattttgagatcatttgacatcagagctgtcatttttgttatatacttcataggtgtttgggcttgttgataaagcttcatgtaagtttaacctcagtcctaaaatgtaattctcgtgtaccttcatacttaaatctctattcagtcttacattttattgtcacaatggaaggcatttgttctgtcaacattgttcctaaatcatgaagaatattgatctttgatgtctgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67203" stop="69639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67503" g_stop="67858" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="69347" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="952" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U321179" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67503" e_stop="67858"/>
          <exon e_start="68752" e_stop="69347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCACTTTATTT</genome_strand>
        <mrna_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316853" ref_strand="+" ref_description="SGN-U316853        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28598144-28599636 FORWARD | Aliases: T23E18.30, T23E18_30(evalue: 2e-26, score=115) genbank/nr: conserved(evalue: 2e-25, score=117)">
      <seq>taatttccagtttattcaaccactgaagcttttcgggagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacaaaaaaaaaaaaaaacttagtctttctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77892" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78192" g_stop="78364" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80734" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="516" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="532"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U316853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78192" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</genome_strand>
        <mrna_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316854" ref_strand="+" ref_description="SGN-U316854        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28598144-28599636 FORWARD | Aliases: T23E18.30, T23E18_30(evalue: 1e-26, score=115) genbank/nr: conserved(evalue: 2e-25, score=117)">
      <seq>gagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataagacttcttagtctttctcctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77928" stop="81062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78228" g_stop="78364" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="183" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="231" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80761" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="491" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U316854" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78228" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</genome_strand>
        <mrna_strand>GAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTC------------ATT----TGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346150" ref_strand="+" ref_description="SGN-U346150        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaatggcatctatttaagcagagagatgtcttcttttagccaaaataactaagcataggagattcatgtcaaaacatttttttcttgagctgaatatgtggttcataggacgagtttgattgttggtagatcatcacttgcaccagcatattcccaccttttgcaatctcttcactactcggatatttgctgctagtactatgttgagattttgagatactcaaaaacctatgaaaatcttaatgtgctgtcagttataaatttattggttgaattattgtgacattgatatcttcaagtgtgctgttcctgacttccaaagtcttgaatcctctatttttgtttgactaacccattctggtgaattgtgctaattgattttgcagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79801" stop="80855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80101" g_stop="80555" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U346150" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80101" e_stop="80555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACA--TTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</genome_strand>
        <mrna_strand>AAAATGGCATCTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCATAGGAGATTCATGTCAAAACATTTTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312554" ref_strand="+" ref_description="SGN-U312554        Tomato 200607 #1 [44 ESTs aligned] arabidopsis/peptide: AT5G42270.1 | Symbol: None | FtsH protease, putative, similar to FtsH protease GI:13183728 from (Medicago sativa) | chr5:16919714-16923100 FORWARD | Aliases: K5J14.13, K5J14_13 (evalue: 0, score=1097) genbank/nr: chloroplast(evalue: 0, score=1199)">
      <seq>aagcaacccaaaccaacatccaaatctatggcttctattcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccccaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggttgtttagtgttattgggaacttgttgttccctattattgcttttgctgggttgtttttccttttcaggcggtctcagggcggcccaggtgggcctggaggacttggcgggccgatggatttcggccggtctaagtccaagtttcaggaggtgcctgaaactggagtgacttttgctgatgttgctggtgctgatcaagctaaattggagttacaggaagtggttgatttcttgaaaaatcctgataagtatactgctttaggtgctaagataccaaaagggtgtcttttagttggtccaccaggtactggaaagacccttttagctagagcagtagctggtgaggctggtgtgccatttttctcttgtgcagcgtcagagtttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttgagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagattgatgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgacaaaaaaaaaaaaaaaaaaaaatccaccaccttgctgggggggcccgaagcccaatttgccatatgagggggactataaaatnnccgncgttaccgttgatctgcttgacctttttgagaggagtgtcgcttgcttaattttttgcattatctggttttagcccttttatcttgaaacattcagctgtttacaattttgaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84462" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84762" g_stop="86196" g_length="1435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1435" r_length="1435" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1436" r_stop="1682" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1683" r_stop="1866" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1867" r_stop="2038" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87731" g_stop="88048" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="2039" r_stop="2356" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U312554" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2356</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84762" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="88048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGA</genome_strand>
        <mrna_strand>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312552" ref_strand="+" ref_description="SGN-U312552        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT4G35230.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr4:16755123-16758096 REVERSE | Aliases: F23E12.210, F23E12_210 (evalue: 0, score=645) genbank/nr: gi|18418600|ref|NP_567980.1| protein kinase family [Arabidopsis thaliana] gi|16612249|gb|AAL27496.1| AT4g35230/F23E12_210 [Arabidopsis thaliana] gi|22655470|gb|AAM98327.1| At4g35230/F23E12_210 [Arabidopsis thaliana](evalue: 0, score=645)">
      <seq>ggtgttggaaacttgaggcacaaaaaggccggccaatttaattgggtactgctctgatggggatgagaggttgcttgtagctgagtaccatgccaaatgatacacttgcaaagcatctatttcactgggagaatcaaacccttgagtgggctatgcgtttaagagtggctctatatattgctgaagcattggactactgtagcagtgaaggtcgaccactataccatgacttgaatgcatatagagttctctttgatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcagggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcaagaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaaaacatattcctcctggtcatgcactcgatatgatacggggaaaaaacattcttctattaatggattcacatttggagggaaatttctctacagaagaggcaactgttgtatttgatctggcttcacgatgcttacagtatgaacccagggagcgaccaaataccaaagacctcgtttcaacacttggtccattgcaaagcaaacctgatgttgcatctcatgtaatgttgggtattcccaagagtgaggaagctccaccaactccacagcaccctctttctgcaatgggtgatgcttgttcgagaatggatctcacagctattcatcagattttggtaatgacacattataaagacgatgaactgacaaatgagttgtctttccaagagtggactcaacaaatgagggatatgttagaggcaagaaagcgtggtgacttggcatttcgggacaaggactttaaaactgccatagattgctattctcagtttgtagatgtgggaacgatggtgtctccaactgtttatgcacgaagaagcctttgttatctcatgtgtgatcaaccagatgctgcccttagagatgcaatgcaagcacaatgtgttcacccagactggtcaactgcattttacatgcaggcagttgccctgtcgaagctagacatgcacaaagatgcagctgacatgttgaatgaggctgcaattctagaagagaaaagacgcggagggcgtgcatcttgataatactctctcttgtatcattcttttggccctatcagttattcttgtcatcacaaaattagcccaaatttctgtatcatttgttttgagtgtgattgtcttagaactatgtataacaaaggaagagaatcatttgctctattggtatatgcgtatgtcagttttgcactctgatttgtcaaaatatgaaaaataaatttctcaatgtgtacatttgtatgtatatttgttaatacaatagagtggtgaagatacattggtgaaatcaagaaatgtatagctcagccttgccatcaatgaaaaggctcatgaactcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93238" stop="87597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92956" g_stop="92833" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92350" g_stop="92217" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="260" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="366" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="452" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90331" g_stop="90143" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="641" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90142" i_stop="89821" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89820" g_stop="89656" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="806" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89570" g_stop="89457" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="920" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89456" i_stop="88470" i_length="987">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88469" g_stop="87897" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1493" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U312552" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1491</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92956" e_stop="92833"/>
          <exon e_start="92350" e_stop="92217"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90143"/>
          <exon e_start="89820" e_stop="89656"/>
          <exon e_start="89570" e_stop="89457"/>
          <exon e_start="88469" e_stop="87897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTGGAAATTTGAGGCA-TAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTA-CATGCCAAATGATACACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGATGTTAGTCCTACCACCATAATCTGCTCTATTTTTCTTGATGTCTTGTTTTCTATCCTTTCCCCTTCCAAAGAATATGGGAAAATAAAAACCTCATATTGTAAAAAATTTGTTTGGTAAGCTTAACTACCAAATATTGCCTCCTCATTTCTCCTTCATCTTAAGATGCTCCCTTATCTTCAATTCTCGTTGTATACTGTGTCCATGTCTTGTTTGTTCCCGAGCAACTGCTTCTGCTGGGAAGTTTGAGTCTATTTTTATCTAATTGATTGATTTGTTTTATCCAATTAGAGGTTAGAAGGAGTTTCTGATAGTTTGATTGCAGGTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAGGTAATTATTTTGACCTAAACTGCCACTGCAGAAGCATCTGTTTCTTTCACATCTTTATGTTGTTGTTGGATGCCCAATGATGCAGTTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAGGTATTTGCCTTCATCTAATGAGAATGTGTCAATCTGTATTACTGGTTACAACTTGCAACTTCCTTAACCCAGTAAGGTCAGTATTGGCATTTGGCAATAAAAGACTGACCCAGACAAGACATGAGGTAGACCGTAATATACTTAACTCCTGAATACCATTTATGTAGTTGGATGCCATAAATAGTTACTTCCTTGATTAATTGAGACATGCATCTTCATTGGTGATAGGAATGGCAGATCTTCTGCTTCTTCTTGTGTGGGTCGATTGACATTCCCAAGTCTCTATCATGTATCCAATTTAGAATTTTAAAATTAGCGGCTTTTCCAGAAAAAAAAATCAGTTTCCTTGGAGCCATCTATGCTCGACCACTTAATAGAAAGACCAAAATCTGAATGTGGCCTGTGTTTATGGTGTCTTTTCCACATCTAATTCTATACTGTATGTGATCTAGTTGACATTTTTGGTTATTTGTGTCACCGCTGAATCTTCCTTGGCCAAAAATCCAAGGAATAAAGTCAATGCACTCTTGGAATCTAATTCCATACTGTAAGCTGATCTTGTTCGCGGGGATGTAACACAATTATTTGCGTGCCTGGTAAATCTGCCATGTTAAATAGAACAACCAATCTATAGACTCCATCCAATCAGAGGTGGACCCAGGATTTGATTACAAACCATATTTCTAGCTTTATCCCTGCATCCAATGCCAATATTGTAGCATGACCTTTTCTGAGAATGAGATAGCGAAGATGTGGCCAGAAACTTGCTGCTTCATTGGATGCTTTACTGCATTACCTTTTCTAGCTGCTGGAGTAGTCGTATAGATTTCCTGCATTCCCTTAATACACGGTTATTAGGTAGCATGATGATCTAGCTTGCATTTGGGTTAACAGATTTCTTTCATTAGCTTACTTGTGCGCGTAAGATGGATGAGCTAAATACAACTTTGCTTTAGGCAATCTGCTTATTTCTGTGTCTCTTTGCAGTTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</genome_strand>
        <mrna_strand>GGTGTTGGAAACTTGAGGCACAAAAAGGCCGGCCAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACCATGCCAAATGATACACTTGCAAAGCATCTATTTCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG..........................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGAT..................................................................................................................................................................................................................................................................................................................................GTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAG.....................................................................................TTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312553" ref_strand="+" ref_description="SGN-U312553        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G35230.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr4:16755123-16758096 REVERSE | Aliases: F23E12.210, F23E12_210 (evalue: 8e-64, score=240) genbank/nr: gi|7270475|emb|CAB80240.1| putative protein [Arabidopsis thaliana] >gi|3080427|emb|CAA18746.1| putative protein [Arabidopsis thaliana] (evalue: 6e-62, score=240)">
      <seq>gctgtataactaatcccaaaaaaaaaataaaaaaaaaagactaaaaaagctatttttacgactaatttaatccataataaagttgtattcctttttttgttgttttttttggttgggtgaggtttaagattggttatgatgtttaattgaagggattcttgatttgggtcatcatgggttgttgtcaatcttcaatcttgaaggagttgagctcagagaaagatcagcgtcatggggtggtaaacgcacgagcttctaacggcaccggcgccggagctgctgtcggagatggtggggttccggtgttttctgagttttcgctttctgagctcaaagcagctacgaataacttcagttcagaatttattgtttctgaaagtggagaaaaggctccgaatatggtttacaaggggaggttgcagaatcggcggtggatcgctgttaagaagtttactaaatcggcatggcctgatcctaaacagtttgcggatgaagcatcaggtgttggaaatttgaggcataaaaggctggctaatttaattgggtactgctctgatggggatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcagggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcaagaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaanacatattccctctggtcatgcactcgatatgatacgggaaaaaacattcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93965" stop="89996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93665" g_stop="93178" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92968" g_stop="92891" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="566" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92890" i_stop="92095" i_length="796">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="672" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="758" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90331" g_stop="90296" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="793" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U312553" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93665" e_stop="93178"/>
          <exon e_start="92968" e_stop="92891"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTATAA-TAATCCCAAAAAAAAAATAAAAAAAAAAGATTAAAAAAGCTATTTTTATGATTAATTTAATCATATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCGGTATTGCCCTCTTACTTTGATTTATTTACTGTATTGCCCTTGTTTTATTTTTTGTGAAGCTAGGGTTTAATGTGGATTTGAGATTGACCTAAATTGACCTGAATGGATATAGTGGATATAGCCATGTAACTGAGCTACTAAGGTTCCACGTTTAGGATTGAGGTGTTGTTGCTATTTGTTCTGATTTTTGTTGATGTTGTTGGAATTAGGATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTA</genome_strand>
        <mrna_strand>GCTGTATAACTAATCCCAAAAAAAAAATAAAAAAAAAAGACTAAAAAAGCTATTTTTACGACTAATTTAATC-CATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG.................................................................................................................................................................................................................GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAANACATATTCCCTCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATAC-GGGAAAAAACATTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323821" ref_strand="+" ref_description="SGN-U323821        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03087: Arabidopsis protein of unknown function | chr1:28607707-28608822 REVERSE | Aliases: T23E18.17, T23E18_17(evalue: 4e-33, score=139) genbank/nr: gi|6573720|gb|AAF17640.1| T23E18.17 [Arabidopsis thaliana](evalue: 1e-32, score=144)">
      <seq>aaaatgggaaaagaaaaaacactatcaaaatcgagaacaatggctcctcgaatggtcgctaattttcgcagatctctttctttcccaaatcacccaaatcactcaaataaacccaaaaaatccttccatgttcgatctgctagtctgccatgtcgatctcatccattaatttctcagctcaaagatgatttaaacgagctcaaatcatgggcttttaagccccaaaatcgaacttcaaattggatttgtgatggactcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaggtacataattttatttacttaattatatggccgaaaatttaaatataataaaatagactttccgatcatatttttgaaaaattcaaatttcacaaattgactattttttaaatactattgtccgcgcctttgcataaaatggccttttttttatttcattttttaaattttgttcccaattagctaagtgggctaaaggatcagtaattcaccgctactagattggagaattccaccttattatccattaattgtataagttcattatttttcatacaaattctcgaggtatcaaatctttgataatgtgtgtgattataatgtttataattttagttattgatatttaattatattatgtttgaacaggtagctgtgaggcgtaaagatgaatctaagattgcttcgtatgctaaagcactgagaaaaatggctaaggaaatggataaacttgcgttgaatgtacaatgtatagggaaatatattatacctcaacaaactataccaatcccagatggagatgcagagttagcagaagtgatgaaagacataatagaagtaacacaattagtttcaattgcactttttaatggacttggagtatcaatggcatatgcaaaaccatcatgttcatggattggattaggaaagaagacaaaaaaattgaaagaaaatgaaggaattgtggaatttgtagaaatggaattggagaatttgttgagaaaaaataaaggagatgaagaggtgaaaattgtgactaaaaaaatgcatgaattggaagattgtatttgtgggattgaaaattgtggggagaaagtgtttaggagtttaattaatgctagagtttcattgcttaatgtattcncncnatagagaaagaaaattaaagatgatgcatacatggatattttgcttttatggattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="100010" stop="98070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99710" g_stop="98370" g_length="1341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1373" r_length="1373" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U323821" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>1341</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99710" e_stop="98370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTT-C---C--------G----------A--T--C------A-TATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCACACAATAGAGAAAGAAAATTAAAGATGATGCATACATGTATATTTTGCTTTATTGTATTTTTTT</genome_strand>
        <mrna_strand>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTCGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTAC-ATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTGAAAAATTCAAATTTCACAAATTGACTATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTGAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCNCNCNATAGAGAAAGAAAATTAAAGATGATGCATACATGGATATTTTGCTTTTATGGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323822" ref_strand="+" ref_description="SGN-U323822        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03087: Arabidopsis protein of unknown function | chr1:28607707-28608822 REVERSE | Aliases: T23E18.17, T23E18_17(evalue: 1e-34, score=142) genbank/nr: gi|15222989|ref|NP_177751.1| expressed protein [Arabidopsis thaliana](evalue: 6e-33, score=142)">
      <seq>tttgtgatggactcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaggtagctgtgaggcgtaaagatgaatctaagattgcttcgtatgctaaagcactgagaaaaatggctaaggaaatggataaacttgcgttgaatgtacaatgtatagggaaatatattatacctcaacaaactataccaatcccagatggagatgcagagttagcagaagtgatgaaagacataatagaagtaacacaattagtttcaattgcactttttaatggacttggagtatcaatggcatatgcaaaaccatcatgttcatggattggattaggaaagaagacaaaaaaattgaaagaaaatgaaggaattgtggaatttgtagaaatggaattggagaatttgttgagaaaaaataaaggagatgaagaggtgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="98247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99466" g_stop="99267" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98929" g_stop="98547" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="583" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U323822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99466" e_stop="99267"/>
          <exon e_start="98929" e_stop="98547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAAT</genome_strand>
        <mrna_strand>TTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAG.................................................................................................................................................................................................................................................................................................................................................GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341050" ref_strand="+" ref_description="SGN-U341050        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28611344-28614022 REVERSE | Aliases: T23E18.18, T23E18_18(evalue: 9e-32, score=124) genbank/nr: gi|15222990|ref|NP_177752.1| expressed protein [Arabidopsis thaliana] gi|26451994|dbj|BAC43087.1| unknown protein [Arabidopsis thaliana] gi|28951023|gb|AAO63435.1| At1g76250 [Arabidopsis thaliana](evalue: 7e-30, score=124)">
      <seq>gctacaagacttacttagtatccatgagatattcaacaacaaaaaaagacctgtatttgtctacagaaaatctaaggttttgtagacctgtagatggacgtagaaaaaactgcgtgggaggctagaaaactatacatagtttactaaactataatgggtttggtgataaacctaatcgacaaatttgagacactggaggagcctcccaataagcagtttttttcattaattctgcgaaatctttcacacactgctccatttttagattttcaactcgttgtcttgctgcagccagtttattacctgccacttggtcgaatattttctcccaaccactctcccactcagcatgggcatcacagagctgaagggtgttattggtccagtcagtccagctccatcctctgtacagtttattcatcgtgagcccaacacagtggtgagtgcacggaggtgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="105413" stop="106471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105713" g_stop="106171" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U341050" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105713" e_stop="106171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAAGAC-TACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</genome_strand>
        <mrna_strand>GCTACAAGACTTACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324075" ref_strand="+" ref_description="SGN-U324075        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:15893816-15896882 FORWARD | Aliases: F7F22.5, F7F22_5(evalue: 2e-111, score=398) genbank/nr: gi|30693557|ref|NP_174971.2| expressed protein [Arabidopsis thaliana](evalue: 1e-109, score=398)">
      <seq>gaaaggagtgcacaaaaacaagcaaaatcaggcactgagaacgctgggtggtatgaaaattggtgggaaaagtatgatgcaaagggttggacagagaaaggggcacacaaatatggcagattaaacgaacaatcgtggtgggagaaatggggagaacattatgatggaagaggatctgttcttaaatggacagataagtgggcggaaactgagcttggaacaaaatggggagacaagtgggaagagaaatttttcgctggaattggttcgcggcaaggagagacttggcatgtgtcacccgttggtgatagatggtctaggacatggggagaggagcacttcggaaatggcaaagtgcacaagtacggcaagagcacgacaggtgaaagttgggacatcgttgtggatgaaggaacttactacgaggctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttcttttcaaacaaggttgatgttgatgctagttggcaaattttcagattttgattgtaattgtcaactctcgatgtgacaaaacatactttgcctattcatttagttcattcttttagagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="112709" stop="74027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112409" g_stop="112348" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112347" i_stop="112262" i_length="86">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112261" g_stop="112136" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="188" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112135" i_stop="111504" i_length="632">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111503" g_stop="111382" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="310" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111162" g_stop="111123" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="350" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111015" g_stop="110941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="425" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110717" g_stop="110425" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="718" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110424" i_stop="109377" i_length="1048">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="109376" g_stop="109351" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="744" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U324075" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112409" e_stop="112348"/>
          <exon e_start="112261" e_stop="112136"/>
          <exon e_start="111503" e_stop="111382"/>
          <exon e_start="111162" e_stop="111123"/>
          <exon e_start="111015" e_stop="110941"/>
          <exon e_start="110717" e_stop="110425"/>
          <exon e_start="109376" e_stop="109351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTGGTAAGAGATTTTGAGGGGAATAATTAGTTTACATGGTCATGAATACATACACAAAAAGATATTAAGCATTGATATTTCATATACAGGTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATGGTACATACCTATTTGTTGTGTTAGTAATTTAGCATCAGACTCTGGCCCTCTTGATATAGTGGAGCTCTGGTGGAGGCACTTTGGTAACTATTGGTAGTGCTTTTCCACTAAACTCTTGGCACTTTGAAGTCCCACGACCTGTTTTTGCCTTTAAATGATGTTAGCTATGTCACCTGAACAAGCAAAAAAGCTTTAGAATACATTCATCCAAGACATAGTGATAAACTAGAACTGCAACGATCTGCTTTGGGTTCACACTTGCAGTAGATAAACCTCTGTTTATGCTGAACTTTTGCTACTGCACTAGTTATTGAAAAGAAATCAAGTTCTAGAATTTAATGGTGAGATAATCTTGACTTTGGTCATTATATGTCCTAACTGGCCCTCTAGAATTGTAATCTCATACAATAGAAACTTGACTGATATCAACAATATTGCTTGAAGACAGAGGTTAAACATCATATTTTACTCTCTTCTTTTCATGACATTATTATAATTGCTTGTTTCTGACTTTTTTTGAATTGGTAAATGGCATTGTTAAAGGGGTGAAAGTTTGTCAAAACCTCCCTAGTGGTCTTGAGTTGCTGACAAGTTGGTTTATATTGCTTATCGTTCCATGCTCCTTTTCTCAGGACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATAGTATGTCTACCTTCTATTTAATTGAATTACATCTTTACATTCCAAAAGGACTTAGGTGCTAAAACACAAAAACCAATTACAAGTTTTTCCTGGTGAAAGCTAAGCTGTTAAAAGAAATTCCCTAACTATCATAATATGTATTACCGTGTCTCTTATTTTGAGTTTTAAGTTAACCAATCATCCAATTCTCTTCTTAGTTTCCTTTTCCTAATTATCCAGGATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGGGTATGTCACAATTATGAATATGAACTAAAATTCAGCTTGTTAGATGTCTATTTCCATGCACTTTTACACTTTAGAAACTTATAAATAATGTTGTTTCCATGAATCAGCAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGAGTAAGTCATAGTTTAGTGTTAGTAGGCTGTAGGATTTAACTTATAACATGGACATTATCACTACAGTTACAGCACGTTGCCTATCTTATTTTTCAAATAACTTGTTCCACTTACTACAGATAGTTAGTTACATGTCTCTATTCTTGTTTGTTAGCGTATAGAAGTTAAACTCATTCATGAATAGTTTTTATGATATTAAACTAACATGTTTTTACTTGAATAGGGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATATTTGCGTCGGGTTTAAAATATTCTCTACCATATATGTCTTTATTCTCGAAATCTTATGTCTGAAATCGTTAGTTAAGAATGAAAAAGTAAATTAATGTTATCATAATAGTTATAAACATGGGCCAATTTTTGAAAGGACCAACTCTAGGGTGTAGACAAAATAAATTAAGCTAGAACTAATTAAGATTTAAAGTTATGCATCTATCAATAAATAAAGTTGGTGGCCCTAGTTCATTTGAAATTAACTGCATTGCTGTTTATTAATGGTGCCGAATGTTTATAAAAATTAAAAGGTCGATGAGCTTTCATCTTTTAAATATGAGTTTGTTTGTATTCTTTCATACGTAGATGATATACCATGTTTACTACGTGTTTAATTGAATCCAAAATATTAATGAAATGATCAAAATTATAAATAAAATTATTTGAAATATCTCTCCAAAATAGACCTATTCAATATTTGAATTCGAAACAAGCTACTCAATTCAGATATCAAACCTGAAAAGGTAAAACTTCTTTCATAAAAATAGCATGTGGCAGCAGAGCCGATGTATAATTTATGAATACGATTAATATTGATATTATATATTGTATGGTCAAATAAATATAATTTGTCATAAGCCATGACTTGTGTCGTCTTTATTGAGATTAACAAATACAAATATTTAAATTAACAAAACAAGAGATTAGTCAAGTAGAGAATATATGTCAATTGCTAGATCTACTTTATATATTTTCACTTTTTAAACCTTTATTCCCTCTTTTTATTCCTCCTCGATTTCCATAATTAATTACTCATCCATCAAAAAAAAATAAAAAAATTACTCATCCATCTGCATTTCGTTTATTTTTTCCCTCTCATGTAAATGCAATAGTACTAATTTTTCTCCCTAATGTAAGTTACTTATTAATTACTAATTTATTATAGTAAATAAACTACTATAGTTTATATACATGTAAAATAAAATATTCATATTCTTTTCTTGCTTTAGTTTTTTCGTTTTTCACAATCGAGATTCATCATTATCACATTGTGATAATAATCAAAAAAAAGAAAAGAAAAAAGAA</genome_strand>
        <mrna_strand>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTG......................................................................................GTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA...........................................................................................................................................................................................................................GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG...........................................................................................................CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA...............................................................................................................................................................................................................................GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTTTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329939" ref_strand="+" ref_description="SGN-U329939        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:15893816-15896882 FORWARD | Aliases: F7F22.5, F7F22_5(evalue: 4e-65, score=244) genbank/nr: gi|30693557|ref|NP_174971.2| expressed protein [Arabidopsis thaliana](evalue: 3e-63, score=244)">
      <seq>gtttctctgaatctccatctgaacttcactcacttctagggctttatcaacacattcttctacctccaatggcattcttttgagcaataatggcggcttcggcttcttccagaggattcacagcgcccataggggcggctaagctgcccacagttgaggtgttccctacattacctaatggttttgtagaatttcgaaggaagaagaggagtagtaccggaggtttcttcagtatacaatgttgttgttcagattctgtgatgccaattagaggtggtagtggttctgggaatggcgttgataaaggtgatgatgggaggttcgattctaagaagatcactgctaattatatgagaactcaagcttcttccccaatgccctttgcatctcctcagtctagatttgtttcaaagccagaaaaattcttttcccgatgcaccccaagaagttcaggccctaagtcccgtgattctccaccaaaacgagacacgggcattgctaatgagaaagattggggcatcagtatgctaaatgataatgtcaatgaaactggagtaaacgaggacggcagtacatggtatcgggagagtggggaagaccttggtgacaatggataccgatgccgatggacaaggatgggtggtcagagcagtgatggtaccttagaatggaaagaaacgtggtgggagaaaagtgattggactggatacaaagaactcggtgttgagaaatccgggaaaaatgttgaaggggacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="115909" stop="112277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115609" g_stop="115216" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113853" g_stop="113762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="486" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113668" g_stop="113475" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="680" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113474" i_stop="112798" i_length="677">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112797" g_stop="112758" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="720" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112757" i_stop="112615" i_length="143">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112614" g_stop="112577" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="758" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U329939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115609" e_stop="115216"/>
          <exon e_start="113853" e_stop="113762"/>
          <exon e_start="113668" e_stop="113475"/>
          <exon e_start="112797" e_stop="112758"/>
          <exon e_start="112614" e_stop="112577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCAGTAAGTCAATTTTTATTTGCACTACATTTCTTGCAATCAATCTTCATAATAACTGGAATAGGTGGTTGAATTGTAAGAAATACTTTTTGAACCATGAATGACTAATATAATTAAATGAGGCAAATTTAGCAAAATGGATATTGAGGATTCATATAGGTGAACCGAAAAGGGTGTTGCTTGTTTGGTTATTGAATATTTTATTTTTTTGGGTTTCCCATCCTGTATCTAGTAACCACATTGTAGCCAAACTAATCCGGATTCCATTGATGAAAGCTCCCCACATCCTGTGGTTGTTGAACTTATAATAAGGTTAGTTAGTGTGTATTGTTATGTCCACTTGCAAAATTGTCAAACAATGTCATATTCAAAGTAAATCATTATCCATGATTAAGCTGAATCACTTCAAGGTTGGAGAGTGATTAGTAGTAATTTTCTTATTATTCTAAGAGCTAAAGTCACCTCCTTTATTAGGTTCTTAGGATGCTTTAGAAGTAATGTGATATTTATGTATGAAAGAATTAACTTTAGATGTTATTTGGCAGAAGCTGATGAGACATCACATGGGTTTGTTTGGACAGACATTATGATTAGCTTAAATGAAAACAAAAAAAAATATTTTCTTTCTGTCATTGATATGTTGTAGAGATTTGTATGTTTTGTTCTTTCCTATTCTGGTACAAAAGAGAATTTTGTATCATATTGTTTATCAACACCTGAACCCCTTTCAAATATGTTGCTTTTAGCAATCTGGATACCAGTTTGTATGGATTATACTGAGGTTAGTTTGAGCTCTTAGTCAGATATTGCTGTGTCCACTTGCAAAGTTCTTGAACAATTTCATATCAAAGTAATAGATTCTATTGCATCGAATTAATACATGCTTAAACTGCACTCAAGGTTGGTTGGACTAGTTAATAATAATCTTTTATTATAAGAGCTAAAGTTGCAACTTTTACGAGTTCCTAGGATATTCTAGTTATCTAAGAAGTAATCCGGAGGTAATTAGATAAAATCTGTTTGTTTCATTTCATACTATGAATTTTACAATTGATTTGGATGTATCTTCATGTTATTGTCAAGGCATGAAGAAAAATAAGAGATATTCTATTGTTAAAAAAATTCTGCGTTTTGTTAATATCACTTCCTCTATTTATGCTACTTATAGTTTTTGAATGGTCAATAACAAACCCTTCATTATAGGCCCGATAATCTTGATGTGGACTCCAAAGTAGTGTTTGACTTTCTAGCATCTCGAATATCTTCACGGTTTACAGACTCCATCTTTCCATGTTGTGTGTCCTGCATACTTGATTGGAAGTAGCTGTTTTTTTCGGTGATTTTCATCAACTTTTCTATACGCAGGTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAGGTAGTTATGGCTCCTTCCTTTTTGGTTTTTATAAGAGTGTTTCTCTTTTCAGATAAAATTGATAATTTCGTTTATCACCCTTCCTTTCTATAGACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACGGTACGCATGTTCTTAATCTTGTGTATGGTTGTATTGTTGTAGATCTTGAAGATTGAATTGTAAAAATATACTTGAAAACCTATTATGTGGGATCACCTTTTCCAAGGACGAACATCTCATTTTTTTGCGTAAATTAATATTTACCTGATGTGCAATCTCAAGAGTATGAAACTAAAACCTTAACACAGAACTGTAATGTCTTAACTACATTGATGACACAAGCCCAAGAAGTAGAGGTTTAGCTAAAGGAGAATAACAAGAACTTTTCATGTCTAGTCATCACATGAATCAATTTTCTTTGCTGGTTTTGAATGCACATGTTTTTCTCTGGCTAGGCTTGTGGACTGTTGAGCCAGTGATAAGTGTGTAGAATATGGGGAATGTTTATCTATCAGAAAATTAACTTTATGTCCTAAACTTGAACACAATGTACTTTTTTTATTGGAGTTTGGGAATGATTGGATAATAATATGACAGACAATTAAAAGGTTTATTAGTTAACTGTGAATACCTTATTCTGATGGATAAAGTACCGCAAATAAGTTCTTGCATCCTCTTTAACAAACTTGTTGAAGAAACATTGGAATCCAAGTTTCATTGTAGACATTATTTTATAACCTTATCAAGTACCATCCCAGGTGGATGCTTTTAATTGGATTTGTTGATCTCCTTGACAGTGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCGGTATGACTTTTTACTTTAAATATGTATAACCTTGCTGCATTTGGTATAAATTTTCTATCTTACAATGGTTTTTAGTGATTCCATCGTCATCCTTTATTTTGTACTTCATGAAGCGTCAAGTTTTCCCTTTGTATAATTAACAGGTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</genome_strand>
        <mrna_strand>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG.............................................................................................ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCG...............................................................................................................................................GTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320962" ref_strand="+" ref_description="SGN-U320962        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 6 WD-40 repeats (PF00400); similar to Rbap46 polypeptide (GI:9454362) (Gallus gallus) | chr1:7112611-7115810 FORWARD | Aliases: F5M15.14, F5M15_14(evalue: 5e-163, score=570) genbank/nr: gi|22329691|ref|NP_173478.2| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|20260516|gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gi|23198164|gb|AAN15609.1| unknown protein [Arabidopsis thaliana](evalue: 4e-161, score=570)">
      <seq>agtgtattagagctgcagttgaaaagttgcaaaatatcaacaacacttttaagatctgcaaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttatggcctcaaatatcaggcacgatgtatcgccgatgtgaaagctgatacggatcacaccagtttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcttttttctcatcctaatgagatctgggaccttgcgtcgtgccccttcgatcaacggattttctctactgttttttcttccggtgaaacatatggggcagcaatatggcagatccctgagttgtatggccaatcgaattctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaacagaatcttttcctctggagctttgatacttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactgggggcgcctgggatccccatgattataatgctctggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctgtggctggcttctcttcctagtagtgacgaaccaactccagagagctttgactcccctaataagccagtggatccattgcttaattcatatagtgactacgaagacagtgtgtatggacttgcttggagctgtcgagagccatggatatttgcatcattgtcatatgatggaagggtaaggccttttatgggttattcatcagaagaaccaagaaaaaaatacacatgtctctggataataaccagcagattttgcaatcttgaactattcttgctttggtttgtataaacaataggaagtgttgctgcgaatgctattttattttttggacaattgtgagagaaaaatttaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125015" stop="118338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124715" g_stop="124586" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="214" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124219" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="347" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123666" g_stop="123555" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="459" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122624" g_stop="122525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="559" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121791" g_stop="121664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="687" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="757" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="846" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="892" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="119230" g_stop="119157" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="966" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="119025" g_stop="118955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="967" r_stop="1037" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="118954" i_stop="118882" i_length="73">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="118881" g_stop="118642" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1277" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1278" polyA_stop="1291"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U320962" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1277</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124715" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124219"/>
          <exon e_start="123666" e_stop="123555"/>
          <exon e_start="122624" e_stop="122525"/>
          <exon e_start="121791" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119157"/>
          <exon e_start="119025" e_stop="118955"/>
          <exon e_start="118881" e_stop="118642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCGGTAAGTTTATGGTTTATTTGACTAATAAGTCTTCTTAGTTTGCTGTCTCATTTTTGTAGGATTAGAGTGAGTCGATCCGAATGCACATAATTTGTTGTTTCTTTTGTTGAATTCTTAGATGTGTTGGATTATATAGGTGGAATTTATTATCTGCACATGACAGAGTGATACTTCTCTTTGAGCTTGATCATGAGGAAATTATATATTCATTGTTTTAGAAGTTAATGTTGTCCATAGTGTGGAATGGATACAAAGGATTCATATAGTCGCAATGTCATGGTTCAGGTGTTTTGATATTTTTGATAGAAATAGTATTCATTGGTGTTTCGAGAATAGTTTAGTTCTTTTGATTTTATAGTGTTCTTTTAATCAGATCATAAGTTCAATTTATGACCTTCTCTTGTCTGTTTAAGCAAAAACTCAAGGAAGTAAAGGCATTTTAATTGCCTTACGTGAAGTTCACGAGAAGTTAGAACGGTAGTGTGGTTGGTGTTACTGATTTGATGTTTATGATGGAACTAGGTTCTATGATGATGCTCTATTCATTTGTAGGTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAGGTCCTTTCCGTAAACCCTCCGCCCTTTCTCTGTAAAAAAGAAAAGGAAGAGAAGCCTAACAAAGAAAAAAAGAAGCAGCACTCGAAAAGTATCTTATCTCACTGTATCTCATAAAGTTTGTTCGTTTTCAGCTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATGGTAAGTACACATTTGCTGTTTCCTTATCAGCTGAGTTTTTAAGCGACATTTGATTTATCCATCTTGGTTCTAGGACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTCTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</genome_strand>
        <mrna_strand>AGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG...................................................................................................................................CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATG.........................................................................GACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTTTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342564" ref_strand="+" ref_description="SGN-U342564        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttaagttgcattgatgattgatcccttgatttgtcgtccatttgcaaatgaaataatctgtttgagtaagtttatgaatctgtgaggtatatctgctttttgcctgtatgcatgcgtgttaacattacaatgttaggagtttgacactcaaatgtggacccatcttaggaacctttttgatattttgtactagcatttcaatttcaatatggaatgtggagaggtactcgtttgctacaagaaggaaaggataattcttttttttctttaaagcataatgtcttcaactttctactttttgtttcctcctagcaatcactttatggagatagattacatgacatgaatgtcatgacatggaaagtacttcctctaaagtgtatggctgtggccttgagtttttagtggctctatttctctatcaggcttctggtttttgctcaacgatttgttgtttatttctgaaaaagttcccatacttgtgtttttaatatgtccatctacctaaatagaagtatgttacccttaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="121136" stop="120004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120836" g_stop="120304" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-U342564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120836" e_stop="120304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</genome_strand>
        <mrna_strand>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321941" ref_strand="+" ref_description="SGN-U321941        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:23587190-23589337 REVERSE | Aliases: F2K11.3, F2K11_3(evalue: 9e-113, score=404) genbank/nr: gi|42562912|ref|NP_176549.3| expressed protein [Arabidopsis thaliana] gi|25404427|pir||B96661 unknown protein, 83181-85105 [imported] - Arabidopsis thaliana gi|12324944|gb|AAG52423.1| unknown protein; 83181-85105 [Arabidopsis thaliana] gi|30102764|gb|AAP21300.1| At1g63610 [Arabidopsis thaliana](evalue: 7e-111, score=404)">
      <seq>gataatagggttttagcgaggaagagaaacaaaattcacgtaaaacaatccaaaagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcataaggtggaataatgttacaggtcctgaaaaaatagacgcgttgaagtatatcgagttacttgaagcagaagtggaggaattgaatcgtcaaatggaaaggaaatctggtaatggttataatgagctgttggaatatctaaagactcttgagcctcaaaatatcaaggagctaaccagtacagctggagaagatgttgtgctcgccatgaattctttcattaagcgtctcttagctgtttcagatcctagtcaaatgaagactagtgtaacagagacaagtgccccagaacttgccaaacttctttattggctcatggtggttggttatagcatccggaatattgaagtccgctttgatatggaacgggtactaggcacttctccaaagctcgctgagctgcctcctggtgaaaatatttaggcatctctggaaagtgtctaatctatagcaagcattaaaacgttgaagcaacatacatttttcatgagctttacgatggtcaatagtaaaattttatcaagcttgtacgactatctgggaggacaacagtggaaattggttttagtgcattttcttcactcactcccagccccgctccccctattattctcagtttgggagcatcattaagacgctcatacaaaggaaatgtactataaattgatgcacaatgtaacttatgtgagttaatttgattcattgccctctaaaatgtacctctctgtttatgggaatgagaaattttgtggcttagatctccaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125410" stop="129871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125710" g_stop="125986" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="367" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="448" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="580" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127926" g_stop="128144" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="799" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="128456" g_stop="128548" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="892" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="129068" g_stop="129570" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1395" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1396" polyA_stop="1414"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U321941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1395</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125710" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="128144"/>
          <exon e_start="128456" e_stop="128548"/>
          <exon e_start="129068" e_stop="129570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAGGTTAGCATGCTTGCTGCTTGAATTGGGGGAGGGTATTTGAACATTCTAAGATGGTTAATGTAGGTGGGAGGGTATTTGTACATTCCAGGATGCTTTAGCGTAAGTAGTTATTGCTTAAATGGTGTTTCTTTTTGTATTGGTATTCTGATTTTACATGACCACTATAGATGAGGAATACCTATTTTACAAATCTTGAAGTGCATGGATAGACAAGATATAACCTAGTAATTGAGTGCGTACTTATTTATATATAATTGTTAATTCTTAATGGAGAAGGTTATTCATTTTTATTCTACTCTGACATTTTGCAGGAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAGGTATAACATTTTTATTGGAACTTATTTTATGGTGTATGTATTTGTGATACTGCTTCTTTCACTTTTATAAAAGAAATATCAGTTGCACTGGTCATGTCATGATTCATTTCTGGTAAGTTTCTAAAATCATTCAGGCAGGCATGGCTTGTGTACATGTAAAGGATGTTGAAATATCACTTAAAAAACAAAAATATTTAGTTTTCACTAATCAATATGATTAACTTGTGTGTCCTTAGATCTTCTAGTATGAAGGGTGTGTTCAAAACTTCTCTCTCCATGTGCCTATTTTGACCAAAGCAGATTAGTTATCAACTATTGAGACTTATAAATCATGGGATCCTACAAAGAAGTGTCAAAATCTAATTAACAAACATTCTCTTTAAGACTTTGTGAAATAAGACGAACGTATTAATTATGTCTCTAATAATAAGATAGCAAAGCCTGCAAAACCTAAGTATATGCAAATGTAGACATAACAGTTTGTTGTATGCTCATCTTTTTCTTTGATATGGAATGCAGACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</genome_strand>
        <mrna_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG.......................................................................................................................................................................................................................................................................................................................GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343179" ref_strand="+" ref_description="SGN-U343179        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: HCMVUL126(evalue: 6e-26, score=120)">
      <seq>ttttttttttttttttttttagtcaatttttggcaagaggtaattattggctgttgaacaataatgtacactacctgttggtacaacaaaatgaatggatcagtcagatcctactaacactagattattttgcaatcagaattttctcaacattttttctgctctggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="74030" stop="130364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129902" g_stop="130061" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-U343179" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129902" e_stop="130061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGCATAAAAAGACTAGTCAATTTTTGGCAAGAGGTAATTATTGGCTGTTGAACAATAATGTACACTACCTGTTGGTACAACAAAATGAATGGATCAGTCAGATCCTACTAACACTAGATTATTTTGCAATCAGAATTTTCTCAACATTTTTTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTAGTCAATTTTTGGCAAGAGGTAATTATTGGCTGTTGAACAATAATGTACACTACCTGTTGGTACAACAAAATGAATGGATCAGTCAGATCCTACTAACACTAGATTATTTTGCAATCAGAATTTTCTCAACATTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10247" PGL_stop="12734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10247" e_stop="10421"/>
            <exon e_start="10812" e_stop="11192"/>
            <exon e_start="11700" e_stop="11775"/>
            <exon e_start="11877" e_stop="11940"/>
            <exon e_start="12064" e_stop="12202"/>
            <exon e_start="12297" e_stop="12410"/>
            <exon e_start="12556" e_stop="12734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.460" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.300" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10247" e_stop="10421" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.958">
            <gDNA_intron_boundary i_start="10422" i_stop="10811" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10812" e_stop="11192" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.460">
            <gDNA_intron_boundary i_start="11193" i_stop="11699" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11700" e_stop="11775" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="11776" i_stop="11876" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11877" e_stop="11940" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.844">
            <gDNA_intron_boundary i_start="11941" i_stop="12063" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12064" e_stop="12202" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.300">
            <gDNA_intron_boundary i_start="12203" i_stop="12296" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12297" e_stop="12410" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.909" acc_prob="0.776">
            <gDNA_intron_boundary i_start="12411" i_stop="12555" i_length="145"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12556" e_stop="12734" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10247" stop="10421"/>
              <exon start="10812" stop="11192"/>
              <exon start="11700" stop="11775"/>
              <exon start="11877" stop="11940"/>
              <exon start="12064" stop="12202"/>
              <exon start="12297" stop="12410"/>
              <exon start="12556" stop="12734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAG : GTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAG : AGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAG : GCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAA : GTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCT : ACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTC : ATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</gDNA_template>
            <first_frame> S  F  G  D  F  S  S  S  K  R  *  F  H  F  Y  W  I  H  E  L  L  D  P  W  I  D  I  S  V  *  S  Q  R  *  S  S  *  P  *  S  I  S  R  N  R  R  A  W  I  *  S  D  G  V  S  S  *  S   : G  I  R  A  K  *  R  W  C  Q  D  T  Y  V  H  S  V  *  K  G  Y  F  S  *  W  M  Q  P  L  F  I  I  R  I  R  R  I  Q  C  *  Y  Y  T  T  F  F  C  C  S  R  C  A  R  E  T  F  R  C  C  V  L  H  S  K  Y  S  W  W  R  R  I  W  R  R  V  V  *  R  W  C  S  *  Q  K  A  K  L  L  *  *  L  Y  F  C  C  *  V  S  C  M  C  W  L  Y  T  A  T  *  V  V  Y  *  R  W  K  Q  W  W  T  S  C  W  S  L  C  K  S   : E  T  *  S  L  W  L  C  S  C  S  C  W  C  Y  G  Y  A  *  I  P  Q  I  H  Y  R :   P  C  M  D  L  *  F  W  L  F  *  *  G  G  R  I  S  V  A  N  Q  :  V  F  T  T  A  *  C  E  *  A  M  G  K  I  C  Q  F  S  I  C  S  I  P  F  H  H  A  I  D  C  R  S  *  *  *  S  C  S  T  A  L  I  E  T  I  G   : Y  H  A  I  R  P  V  H  E  P  G  G  K  S  P  D  Q  P  Y  R  W  *  D  R  T  *  G  W  S  W  M  W  T  S  N  T  K  T   : H  *  *  S  C  R  Q  I  C  I  H  G  *  R  V  G  C  C  L  G  *  V  K  L  C  L  Y  K  G  I  I  W  K  I  V  E  H  K  *  G  G  R  I  L  M  S  S  Q  L  V  L  H  H  P  I  K  G  I  C  L </first_frame>
            <second_frame>  V  S  G  I  S  A  R  R  K  D  D  S  I  F  I  G  F  M  N  F  L  I  P  G  L  I  Y  Q  C  N  L  K  G  E  V  P  D  L  K  V  F  R  E  I  V  V  P  G  F  D  R  T  E  F  Q  V  N  Q  :  V  F  V  P  S  K  D  G  V  K  I  P  M  F  I  V  S  R  K  G  I  S  L  D  G  C  N  P  C  L  L  Y  G  Y  G  G  F  N  V  S  I  T  P  H  F  S  A  A  R  V  V  L  A  K  H  L  G  V  V  F  C  I  A  N  I  R  G  G  G  E  Y  G  E  E  W  Y  K  G  G  A  L  N  K  K  Q  N  C  F  D  D  F  I  S  A  A  E  Y  L  V  C  A  G  Y  T  Q  P  H  K  L  C  I  E  G  G  S  N  G  G  L  L  V  G  A  C  V  N  Q  :  R  P  D  L  F  G  C  A  L  A  H  V  G  V  M  D  M  L  R  F  H  K  F  T  I   : G  H  A  W  T  S  D  F  G  C  S  D  K  E  E  E  F  Q  W  L  I  K :   Y  S  P  L  H  N  V  S  R  P  W  E  K  S  V  N  L  A  F  V  Q  Y  P  S  I  M  L  L  T  A  D  H  D  D  R  V  V  P  L  H  S  L  K  L  L  A  :  T  M  Q  Y  V  L  C  T  S  Q  E  G  S  P  Q  T  N  P  I  V  G  R  I  E  R  K  A  G  H  G  C  G  R  P  T  Q  K  L  :  I  D  E  A  A  D  R  Y  A  F  M  A  K  E  L  G  A  A  W  V  E  *  N  Y  V  C  T  K  V  *  Y  G  K  *  W  N  T  N  K  V  V  G  F  *  C  P  H  S  W  C  F  I  I  Q  *  K  V  S  A   </second_frame>
            <third_frame>   F  R  G  F  Q  L  V  E  K  M  I  P  F  L  L  D  S  *  T  S  *  S  L  D  *  Y  I  S  V  I  S  K  V  K  F  L  T  L  K  Y  F  E  K  S  S  C  L  D  L  I  G  R  S  F  K  L  I  R :   Y  S  C  Q  V  K  M  V  S  R  Y  L  C  S  *  C  L  E  R  V  F  L  L  M  D  A  T  L  V  Y  Y  T  D  T  E  D  S  M  L  V  L  H  H  I  F  L  L  L  A  L  C  S  R  N  I  *  V  L  C  F  A  *  Q  I  F  V  V  A  E  N  M  E  K  S  G  I  K  V  V  L  L  T  K  S  K  I  A  L  M  T  L  F  L  L  L  S  I  L  Y  V  L  V  I  H  S  H  I  S  C  V  L  K  V  E  A  M  V  D  F  L  L  E  P  V  *  I  R :   D  L  I  S  L  A  V  L  L  L  M  L  V  L  W  I  C  L  D  S  T  N  S  L  *  :  A  M  H  G  P  L  I  L  V  V  L  I  R  R  K  N  F  S  G  *  S   : S  I  H  H  C  I  M  *  V  G  H  G  K  N  L  S  I  *  H  L  F  N  T  L  P  S  C  Y  *  L  Q  I  M  M  I  E  L  F  H  C  T  H  *  N  Y  W  L :   P  C  N  T  S  C  A  R  A  R  R  E  V  P  R  P  T  L  S  L  V  G  S  N  V  R  L  V  M  D  V  D  V  Q  H  K  N  S :   L  M  K  L  Q  T  D  M  H  S  W  L  K  S  W  V  L  L  G  L  S  K  I  M  F  V  Q  R  Y  N  M  E  N  S  G  T  Q  I  R  W  S  D  F  D  V  L  T  V  G  A  S  S  S  N  K  R  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10248" stop="10421"/>
                    <exon start="10812" stop="11192"/>
                    <exon start="11700" stop="11775"/>
                    <exon start="11877" stop="11940"/>
                    <exon start="12064" stop="12202"/>
                    <exon start="12297" stop="12410"/>
                    <exon start="12556" stop="12621"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGISARRKDDSIFIGFMNFLIPGLIYQCNLKGEVPDLKVFREIVVPGFDRTEFQVNQVFVPSKDGVKIPMFIVSRKGISLDGCNPCLLYGYGGFNVSITPHFSAARVVLAKHLGVVFCIANIRGGGEYGEEWYKGGALNKKQNCFDDFISAAEYLVCAGYTQPHKLCIEGGSNGGLLVGACVNQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDFGCSDKEEEFQWLIKYSPLHNVSRPWEKSVNLAFVQYPSIMLLTADHDDRVVPLHSLKLLATMQYVLCTSQEGSPQTNPIVGRIERKAGHGCGRPTQKLIDEAADRYAFMAKELGAAWVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10800" e_stop="11515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10800" e_stop="11515" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10800" stop="11515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</gDNA_template>
            <first_frame> L  H  L  Q  V  F  V  P  S  K  D  G  V  K  I  P  M  F  I  V  S  R  K  G  I  S  L  D  G  C  N  P  C  L  L  Y  G  Y  G  G  F  N  V  S  I  T  P  H  F  S  A  A  R  V  V  L  A  K  H  L  G  V  V  F  C  I  A  N  I  R  G  G  G  E  Y  G  E  E  W  Y  K  G  G  A  L  N  K  K  Q  N  C  F  D  D  F  I  S  A  A  E  Y  L  V  C  A  G  Y  T  Q  P  H  K  L  C  I  E  G  G  S  N  G  G  L  L  V  G  A  C  V  N  Q  V  F  Q  I  F  V  Q  R  I  *  L  I  Y  T  L  I  V  L  F  Y  L  L  *  *  V  T  L  D  V  L  Q  V  T  H  S  C  L  Q  *  N  L  P  V  V  V  F  *  V  T  *  K  *  I  K  *  N  *  V  Q  Y  V  Y  F  C  F  C  C  I  L  V  S  G  G  E  S  R  F  L  P  R  A  F  K  I  L  K  Y  R  G  S  *  K  P  D  T  C  I  L  V  *  G  S  K  Y  I  V  K   </first_frame>
            <second_frame>  F  I  C  R  Y  S  C  Q  V  K  M  V  S  R  Y  L  C  S  *  C  L  E  R  V  F  L  L  M  D  A  T  L  V  Y  Y  T  D  T  E  D  S  M  L  V  L  H  H  I  F  L  L  L  A  L  C  S  R  N  I  *  V  L  C  F  A  *  Q  I  F  V  V  A  E  N  M  E  K  S  G  I  K  V  V  L  L  T  K  S  K  I  A  L  M  T  L  F  L  L  L  S  I  L  Y  V  L  V  I  H  S  H  I  S  C  V  L  K  V  E  A  M  V  D  F  L  L  E  P  V  *  I  R  Y  F  R  Y  S  F  K  G  F  N  L  Y  I  R  *  *  S  C  F  I  C  C  N  R  *  H  W  M  F  C  R  L  R  I  H  V  C  N  K  I  Y  L  *  L  S  F  R  *  P  K  S  E  *  N  K  I  R  F  N  M  S  I  F  A  F  V  A  F  *  L  V  A  G  S  Q  D  F  Y  Q  G  H  S  K  S  *  N  T  G  D  H  R  N  P  T  P  V  Y  W  Y  E  V  A  S  T  S  *  N  </second_frame>
            <third_frame>   S  F  A  G  I  R  A  K  *  R  W  C  Q  D  T  Y  V  H  S  V  *  K  G  Y  F  S  *  W  M  Q  P  L  F  I  I  R  I  R  R  I  Q  C  *  Y  Y  T  T  F  F  C  C  S  R  C  A  R  E  T  F  R  C  C  V  L  H  S  K  Y  S  W  W  R  R  I  W  R  R  V  V  *  R  W  C  S  *  Q  K  A  K  L  L  *  *  L  Y  F  C  C  *  V  S  C  M  C  W  L  Y  T  A  T  *  V  V  Y  *  R  W  K  Q  W  W  T  S  C  W  S  L  C  K  S  G  I  S  D  I  R  S  K  D  L  T  Y  I  Y  A  N  S  L  V  L  S  V  V  I  G  N  I  G  C  F  A  G  Y  A  F  M  F  A  I  K  F  T  C  S  C  L  L  G  D  L  K  V  N  K  I  K  L  G  S  I  C  L  F  L  L  L  L  H  S  S  *  W  R  G  V  K  I  F  T  K  G  I  Q  N  L  K  I  Q  G  I  I  E  T  R  H  L  Y  T  G  M  R  *  Q  V  H  R  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10800" stop="11222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLQVFVPSKDGVKIPMFIVSRKGISLDGCNPCLLYGYGGFNVSITPHFSAARVVLAKHLGVVFCIANIRGGGEYGEEWYKGGALNKKQNCFDDFISAAEYLVCAGYTQPHKLCIEGGSNGGLLVGACVNQVFQIFVQRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21060" PGL_stop="14683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21060" e_stop="20865"/>
            <exon e_start="19459" e_stop="19101"/>
            <exon e_start="18879" e_stop="18759"/>
            <exon e_start="18497" e_stop="18383"/>
            <exon e_start="17733" e_stop="17570"/>
            <exon e_start="17457" e_stop="17386"/>
            <exon e_start="16492" e_stop="16424"/>
            <exon e_start="16335" e_stop="16255"/>
            <exon e_start="16175" e_stop="16056"/>
            <exon e_start="15943" e_stop="15869"/>
            <exon e_start="15754" e_stop="15674"/>
            <exon e_start="14877" e_stop="14804"/>
            <exon e_start="14721" e_stop="14683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.995" acc_prob="0.432" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21060" e_stop="20865" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.957">
            <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19459" e_stop="19101" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18879" e_stop="18759" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18497" e_stop="18383" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.167">
            <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="17733" e_stop="17570" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17457" e_stop="17386" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.432">
            <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16492" e_stop="16424" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16335" e_stop="16255" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16175" e_stop="16056" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15943" e_stop="15869" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.955" acc_prob="0.903">
            <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15754" e_stop="15674" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.928" acc_prob="0.909">
            <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14877" e_stop="14804" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14721" e_stop="14683" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="20865"/>
              <exon start="19459" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18383"/>
              <exon start="17733" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
              <exon start="14877" stop="14804"/>
              <exon start="14721" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG : GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG : GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG : GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG : ACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG : GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG : TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG : GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT : GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC : GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG : AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG : AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG : GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</gDNA_template>
            <first_frame> I  H  F  S  S  K  *  C  R  Q  S  P  N  L  P  D  G  G  *  S  C  G  G  G  G  Y  R  R  Q  A  L  E  F  G  *  S  C  G  G  G  G  E  A  T  S  S  P  R  S  R  P  C  A  A  S  E  R  R  Q  R  F  M  V  H  W   : G  M  C  S  M  H  F  P  T  I  W  T  S  *  T  H  V  F  T  S  F  T  L  N  I  K  V  V  *  Y  F  R  R  C  D  E  K  Q  R  W  R  I  *  *  A  I  T  S  R  T  I  K  G  D  K  L  L  Q  N  M  L  R  H  F  A  I  S  L  L  *  *  Y  W  N  F  I  K  K  V  *  C  R  *  L  C  C  S  N  F  *  T  C  K  A  T  I  S  T  N  *  *  F  F  S  *  S  L  I  A  F  G  C  N  R  K  *  S  S  S  L  :  V  V  Y  E  E  *  V  P  P  *  T  L  V  P  R  E  G  *  M  S  I  H  F  Y  K  R  H  L  Q  T  I  S  D  K  S  I  T  K  I  V   : G  C  K  I  Y  S  K  F  F  S  R  S  L  N  I  L  T  F  *  C  I  N  K  R  *  R  S  G  R  E  W  R  K  *  E  E  E  N  R :   Q  S  R  F  H  W  *  P  Q  D  N  W  G  I  C  Y  S  S  C  *  V  F  *  *  *  Y  C  *  W  R  W  T  D  *  S  L  S  Q  G  G  P  R  S  Q  L  *  *  L  N  G  *  V  R  *   : G  R  *  A  L  F  S  G  H  S  L  L  Q  K  L  Y  I  H  W  R  E  I  S  *   : V  F  E  K  C  E  P  D  T  L  G  Y  *  *  *  T  N  G  R  S  I  R  *   : G  N  N  R  W  G  H  P  S  Y  L  P  G  *  Q  L  *  V  S  C  C  R  *  G  G  H  *   : C  S  D  A  R  Y  R  P  S  F  S  C  R  D  T  K  C  T  P  S  P  F  *  S  T  H  K  R  N  R  E  E  N  *  *  S  R  K  S  I   : R  P  G  *  K  S  *  S  C  R  Q  S  R  V  G  P  H  A  *  R  R  G  R  E  A   : E  A  V  R  C  I  G  V  D  F  S  S  C  Q  *  *  R  F  A  N  Y  I  I  T  K  G  I   : E  S  C  S  K  N  A  Y  K  G  S  S  S  P  K  S  I  G  E  R  E  N  Y  T  L  :  D  A  S  G  E  G  I  W  K  L  T  I  S </first_frame>
            <second_frame>  F  I  L  V  Q  S  S  A  A  S  R  L  I  Y  L  M  A  G  E  V  A  A  A  E  V  I  G  V  K  H  L  S  S  A  E  A  A  A  E  E  E  K  L  R  L  L  R  E  A  V  H  A  L  P  V  S  A  V  K  D  L  W  S  I  G  :  A  C  V  R  C  I  F  R  L  F  G  L  H  E  L  M  C  S  H  P  S  L  S  I  S  K  W  C  D  I  L  E  D  V  M  R  N  K  D  G  E  F  N  E  Q  S  H  Q  E  R  S  R  E  T  N  F  C  K  I  C  L  G  I  L  Q  F  L  Y  Y  D  D  T  G  T  L  L  K  K  Y  S  A  D  D  F  A  V  V  I  S  E  L  V  K  Q  Q  Y  Q  Q  I  D  S  F  S  L  E  V  S  L  P  S  V  V  T  E  N  D  Q  A  V  W :   L  Y  M  K  N  K  Y  R  H  E  L  W  F  Q  E  K  A  E  C  Q  F  I  S  T  K  D  I  F  K  L  L  V  I  N  P  L  Q  R  L  L  :  G  V  K  S  T  Q  S  S  F  R  V  R  L  T  Y  S  H  S  D  A  L  T  R  D  D  V  Q  E  G  N  G  G  N  K  R  R  K  T   : D  K  A  G  F  T  G  D  L  K  T  T  G  E  S  V  T  P  H  V  E  S  F  D  S  N  I  V  D  G  D  G  L  T  K  V  C  P  K  E  A  Q  D  L  S  C  N  N  L  M  A  K  L  D  K  :  V  G  K  P  C  S  L  A  I  H  C  C  R  S  S  T  Y  I  G  G  R  Y  L  K  :  Y  S  R  N  V  S  Q  T  R  W  V  I  D  D  E  R  M  G  E  A  S  V  E  :  E  I  I  G  G  A  I  L  P  I  F  Q  G  D  N  Y  K  F  H  A  A  G  R  E  D  I  D  :  V  R  M  L  G  T  G  R  P  F  L  V  E  I  Q  N  A  R  Q  V  P  S  E  A  L  I  K  E  I  E  K  K  I  N  S  L  E  S  Q  Y  :  V  R  V  K  N  L  R  A  V  G  S  Q  G  W  D  L  M  R  E  G  E  A  E  K  Q  :  K  Q  Y  A  A  L  V  W  I  S  R  P  V  S  D  E  D  L  Q  T  I  S  S  L  K  E  L  :  K  V  A  Q  K  T  P  I  R  V  L  H  R  R  S  P  L  E  R  E  K  I  I  H  W :   M  Q  V  E  R  V  S  G  S  S  Q  Y   </second_frame>
            <third_frame>   S  F  *  F  K  V  V  P  P  V  A  *  F  T  *  W  R  V  K  L  R  R  R  R  L  S  A  S  S  T  *  V  R  L  K  L  R  R  R  R  R  S  Y  V  F  S  A  K  P  S  M  R  C  Q  *  A  P  S  K  I  Y  G  P  L  G :   H  V  F  D  A  F  S  D  Y  L  D  F  M  N  S  C  V  H  I  L  H  S  Q  Y  Q  S  G  V  I  F  *  K  M  *  *  E  T  K  M  E  N  L  M  S  N  H  I  K  N  D  Q  G  R  Q  T  F  A  K  Y  A  *  A  F  C  N  F  S  I  M  M  I  L  E  L  Y  *  K  S  I  V  P  M  T  L  L  *  *  F  L  N  L  *  S  N  N  I  N  K  L  I  V  F  L  L  K  S  H  C  L  R  L  *  Q  K  M  I  K  Q  F   : G  C  I  *  R  I  S  T  A  M  N  F  G  S  K  R  R  L  N  V  N  S  F  L  Q  K  T  S  S  N  Y  *  *  *  I  H  Y  K  D  C  W :   V  *  N  L  L  K  V  L  F  A  F  A  *  H  T  H  I  L  M  H  *  Q  E  M  T  F  R  K  G  M  E  E  I  R  G  G  K  Q  :  T  K  Q  V  S  L  V  T  S  R  Q  L  G  N  L  L  L  L  M  L  S  L  L  I  V  I  L  L  M  E  M  D  *  L  K  F  V  P  R  R  P  K  I  S  V  V  I  T  *  W  L  S  *  I  R :   S  V  S  L  V  L  W  P  F  I  A  A  E  A  L  H  T  L  E  G  D  I  L  S :   I  R  E  M  *  A  R  H  A  G  L  L  M  M  N  E  W  E  K  H  P  L  R :   K  *  *  V  G  P  S  F  L  S  S  R  V  T  I  I  S  F  M  L  P  V  G  R  T  L  M :   F  G  C  S  V  Q  A  V  L  F  L  *  R  Y  K  M  H  A  K  S  L  L  K  H  S  *  K  K  *  R  R  K  L  I  V  *  K  V  N  T :   S  G  L  K  I  L  E  L  *  A  V  K  G  G  T  S  C  V  K  E  R  Q  R  S  R :   S  S  T  L  H  W  C  G  F  L  V  L  S  V  M  K  I  C  K  L  Y  H  H  *  R  N  * :   K  L  L  K  K  R  L  *  G  F  F  I  A  E  V  H  W  R  E  R  K  L  Y  I   : G  C  K  W  R  G  Y  L  E  A  H  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21059" stop="20865"/>
                    <exon start="19459" stop="19101"/>
                    <exon start="18879" stop="18759"/>
                    <exon start="18497" stop="18383"/>
                    <exon start="17733" stop="17570"/>
                    <exon start="17457" stop="17386"/>
                    <exon start="16492" stop="16424"/>
                    <exon start="16335" stop="16255"/>
                    <exon start="16175" stop="16056"/>
                    <exon start="15943" stop="15869"/>
                    <exon start="15754" stop="15674"/>
                    <exon start="14877" stop="14804"/>
                    <exon start="14721" stop="14685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILVQSSAASRLIYLMAGEVAAAEVIGVKHLSSAEAAAEEEKLRLLREAVHALPVSAVKDLWSIGACVRCIFRLFGLHELMCSHPSLSISKWCDILEDVMRNKDGEFNEQSHQERSRETNFCKICLGILQFLYYDDTGTLLKKYSADDFAVVISELVKQQYQQIDSFSLEVSLPSVVTENDQAVWLYMKNKYRHELWFQEKAECQFISTKDIFKLLVINPLQRLLGVKSTQSSFRVRLTYSHSDALTRDDVQEGNGGNKRRKTDKAGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDKVGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQYVRVKNLRAVGSQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQTISSLKELKVAQKTPIRVLHRRSPLEREKIIHWMQVERVSGSSQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26581" PGL_stop="21858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26581" e_stop="26407"/>
            <exon e_start="26298" e_stop="26189"/>
            <exon e_start="24302" e_stop="24032"/>
            <exon e_start="23537" e_stop="23435"/>
            <exon e_start="23338" e_stop="22993"/>
            <exon e_start="22902" e_stop="22540"/>
            <exon e_start="22451" e_stop="22373"/>
            <exon e_start="22293" e_stop="21858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26581" e_stop="26407" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26298" e_stop="26189" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.916">
            <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24302" e_stop="24032" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23537" e_stop="23435" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23338" e_stop="22993" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22902" e_stop="22540" e_length="363"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22451" e_stop="22373" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.977">
            <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22293" e_stop="21858" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26581" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG : GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG : GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG : GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG : GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG : GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG : GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG : GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</gDNA_template>
            <first_frame> Q  I  A  V  L  T  *  S  K  V  E  K  Y  V  A  A  K  I  R  R  S  G  V  F  S  G  I  N  W  E  F  C  C  S  R  R  S  L  *  I  F  R  L  E  C  H  L  W  N  Y  I  S  S  R  S  S  S  T   : G  N  S  D  *  W  S  I  S  W  S  *  Y  Q  L  G  H  Q  *  Q  S  R  Y  Q  Y  P  Q  Q  L  G  *  T  F  S  T  F  L  :  E  R  S  T  K  Q  K  K  L  I  C  R  W  S  I  W  N  N  M  P  N  T  A  R  E  K  *  H  I  Q  S  T  S  E  G  S  N  R  E  F  L  L  L  P  I  S  C  I  P  Q  S  C  W  W  F  W  R  D  *  D  S  Q  Q  A  *  N  P  R  P  F  S  G  P  C  K  R  L  H  H  P  H  W  R  L  V  Q  K  E  P  H   : G  L  E  S  N  S  *  R  R  Q  E  V  T  F  P  *  W  H  S  Y  Q  W  S  W  S  *  W  C  Y  I  H  S  R  S  R :   E  N  L  *  I  E  D  I  K  R  W  I  A  K  F  I  E  F  P  R  *  R  T  Q  N  D  I  S  *  S  R  G  N  T  H  I  A  N  N  L  F  L  T  *  C  P  C  W  P  I  L  L  C  P  H  Y  S  *  S  R  S  K  R  P  L  H  R  C  F  I  S  F  H  D  S  S  P  H  H  H  C  C  T  S  L  *  Q  L  *  H  P  R  L  W  S  S  S  W  W  T  Y  H  P  N  R  L  V  P  *  S  G  P  L  H  Q  :  D  K  L  V  S  K  W  T  K  A  K  P  T  R  F  I  P  L  R  Y  D  Q  H  N  *  N  H  Q  T  C  *  L  C  W  S  S  E  W  Q  T  E  I  C  C  Q  Q  R  V  V  C  A  T  *  Y  S  S  K  T  T  R  L  L  Q  D  W  R  I  Q  S  W  K  H  T  *  F  P  N  W  W  R  N  L  P  R  H  V  C  S  R  C  *  L  Q  A  I  H  *  D  Y  I  R  K  *  *  G  H  R  P  E  L  A  S  *  W  L  L  F  L  G  C  R  :  D  G  W  R  P  V  D  S  S  *  *  E  R  I  Q  P  S  *  C  S  F  T  L  H  N  S   : G  L  S  Q  V  M  D  R  D  I  H  C  I  G  Q  C  R  N  V  E  P  E  D  *  I  L  G  T  T  V  P  R  S  T  T  I  H  E  S  L  H  R  L  N  L  I  E  R  R  I  S  N  S  K  R  R  S  S  L  W  Q  G  G  *  S  A  H  T  T  T  L  K  Q  I  L  Q  F  *  *  R  I  I  *  F  Y  T  I  L  L  Y  Y  L  S  L  E  V  M  P  C  Y  Y  *  *  L  L  K  *  P  *  L  K  V  A  F  F  L  Q  F  H  E  N  I  I  F  C  S  F  L  I  V  V  V  T  L  N  Y  D  K  *  S  A  F  *  I  I   </first_frame>
            <second_frame>  K  L  Q  C  *  H  K  V  K  *  K  N  M  L  P  L  K  F  A  V  A  V  F  L  V  V  L  I  G  N  S  V  V  A  E  D  P  Y  R  Y  F  D  W  N  V  T  Y  G  T  I  Y  P  L  G  V  P  Q  Q  :  G  I  L  I  N  G  Q  F  P  G  P  D  I  N  S  V  T  N  D  N  L  V  I  N  I  H  N  S  L  D  E  P  F  L  L  S  W :   N  G  V  Q  N  R  R  N  S  F  V  D  G  V  Y  G  T  T  C  P  I  P  P  G  R  N  N  T  F  N  L  Q  V  K  D  Q  I  G  S  F  Y  Y  F  P  S  L  A  F  H  K  A  A  G  G  F  G  G  I  R  I  L  S  R  P  R  I  P  V  P  F  P  D  P  A  N  D  Y  T  I  L  I  G  D  W  Y  K  K  N  H  T  :  D  L  K  A  I  L  D  G  G  R  K  L  P  F  P  D  G  I  L  I  N  G  R  G  P  N  G  V  T  F  T  V  D  Q   : G  K  T  Y  R  L  R  I  S  N  V  G  L  Q  N  S  L  N  F  R  V  E  G  H  K  M  T  L  V  E  V  E  G  T  H  T  L  Q  T  T  Y  S  S  L  D  V  H  A  G  Q  S  Y  S  V  L  I  T  A  N  Q  E  A  K  D  H  Y  I  V  V  S  S  R  F  T  T  P  V  L  T  T  T  A  V  L  H  Y  S  S  S  N  T  P  V  S  G  P  P  P  G  G  P  T  I  Q  I  D  W  S  L  N  Q  A  R  S  I  R :   T  N  L  S  A  S  G  P  R  P  N  P  Q  G  S  Y  H  Y  G  M  I  N  T  T  K  T  I  R  L  A  S  S  A  G  Q  V  N  G  K  Q  R  Y  A  V  N  S  V  S  F  V  P  L  D  T  P  L  K  L  L  D  Y  F  K  I  G  G  F  R  V  G  S  I  P  D  S  P  T  G  G  G  I  Y  Q  D  T  S  V  L  G  V  N  Y  R  Q  F  I  E  I  I  F  E  N  N  E  D  I  V  Q  S  W  H  L  D  G  Y  S  F  W  V  V  G :   M  D  G  G  Q  W  T  Q  A  S  R  N  G  Y  N  L  R  D  A  V  S  R  C  T  T  Q  :  V  Y  P  K  S  W  T  A  I  Y  I  A  L  D  N  V  G  M  W  N  L  R  T  E  F  W  A  R  Q  Y  L  G  Q  Q  L  Y  M  R  V  Y  T  D  S  T  S  L  R  D  E  Y  P  I  P  R  G  A  R  L  C  G  K  V  A  N  R  H  T  R  P  L  *  S  K  F  C  N  S  S  R  G  *  F  N  F  I  Q  S  F  C  I  I  *  V  *  K  *  C  L  V  T  T  S  S  C  *  N  D  L  S  S  R  S  H  S  F  F  N  S  T  K  T  L  Y  F  V  L  S  S  L  L  *  L  P  *  I  M  I  N  E  V  H  F  E  L  S  </second_frame>
            <third_frame>   N  C  S  A  N  I  K  *  S  R  K  I  C  C  R  *  N  S  P  *  R  C  F  *  W  Y  *  L  G  I  L  L  *  Q  K  I  L  I  D  I  S  I  G  M  S  L  M  E  L  Y  I  L  S  E  F  L  N  R :   E  F  *  L  M  V  N  F  L  V  L  I  S  T  R  S  P  M  T  I  S  L  S  I  S  T  T  A  W  M  N  L  F  Y  F  P   : G  T  E  Y  K  T  E  E  T  H  L  *  M  E  Y  M  E  Q  H  A  Q  Y  R  Q  G  E  I  T  H  S  I  Y  K  *  R  I  K  *  G  V  S  I  T  S  H  L  L  H  S  T  K  L  L  V  V  L  E  G  L  G  F  S  A  G  L  E  S  P  S  L  F  R  T  L  Q  T  T  T  P  S  S  L  E  I  G  T  K  R  T  T  R :   T  *  K  Q  F  L  T  E  A  G  S  Y  L  S  L  M  A  F  L  S  M  V  V  V  L  M  V  L  H  S  Q  S  I  K  :  G  K  P  I  D  *  G  Y  Q  T  L  D  C  K  I  H  *  I  S  A  L  K  D  T  K  *  H  *  L  K  *  R  E  H  T  H  C  K  Q  L  I  P  H  L  M  S  M  L  A  N  L  T  L  S  S  L  Q  L  I  K  K  Q  K  T  I  T  S  L  F  H  L  V  S  R  L  Q  S  S  P  P  L  L  Y  F  T  I  A  A  L  T  P  P  S  L  V  L  L  L  V  D  L  P  S  K  S  T  G  P  L  I  R  P  A  P  S   : G  Q  T  C  Q  Q  V  D  Q  G  Q  T  H  K  V  H  T  I  T  V  *  S  T  Q  L  K  P  S  D  L  L  A  L  L  V  K  *  M  A  N  R  D  M  L  S  T  A  C  R  L  C  H  L  I  L  L  *  N  Y  S  T  T  S  R  L  A  D  S  E  L  E  A  Y  L  I  P  Q  L  V  E  E  F  T  K  T  R  L  F  *  V  L  I  T  G  N  S  L  R  L  Y  S  K  I  M  R  T  S  S  R  A  G  I  L  M  A  T  L  F  G  L  *   : G  W  M  E  A  S  G  L  K  L  V  G  T  D  T  T  F  V  M  Q  F  H  V  A  Q  L  R :   S  I  P  S  H  G  P  R  Y  T  L  H  W  T  M  *  E  C  G  T  *  G  L  N  S  G  H  D  S  T  S  V  N  N  Y  T  *  E  F  T  Q  T  Q  P  H  *  E  T  N  I  Q  F  Q  E  A  L  V  F  V  A  R  W  L  I  G  T  H  D  H  F  K  A  N  S  A  I  L  V  E  D  N  L  I  L  Y  N  P  F  V  L  F  E  F  R  S  N  A  L  L  L  L  V  A  A  K  M  T  L  A  Q  G  R  I  L  S  S  I  P  R  K  H  Y  I  L  F  F  P  H  C  C  S  Y  L  K  L  *  *  M  K  C  I  L  N  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26550" stop="26407"/>
                    <exon start="26298" stop="26189"/>
                    <exon start="24302" stop="24032"/>
                    <exon start="23537" stop="23435"/>
                    <exon start="23338" stop="22993"/>
                    <exon start="22902" stop="22540"/>
                    <exon start="22451" stop="22373"/>
                    <exon start="22293" stop="22081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1626</number_coding_nucleotides>
                  <number_encoded_amino_acids>542</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMLPLKFAVAVFLVVLIGNSVVAEDPYRYFDWNVTYGTIYPLGVPQQGILINGQFPGPDINSVTNDNLVINIHNSLDEPFLLSWNGVQNRRNSFVDGVYGTTCPIPPGRNNTFNLQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPANDYTILIGDWYKKNHTDLKAILDGGRKLPFPDGILINGRGPNGVTFTVDQGKTYRLRISNVGLQNSLNFRVEGHKMTLVEVEGTHTLQTTYSSLDVHAGQSYSVLITANQEAKDHYIVVSSRFTTPVLTTTAVLHYSSSNTPVSGPPPGGPTIQIDWSLNQARSIRTNLSASGPRPNPQGSYHYGMINTTKTIRLASSAGQVNGKQRYAVNSVSFVPLDTPLKLLDYFKIGGFRVGSIPDSPTGGGIYQDTSVLGVNYRQFIEIIFENNEDIVQSWHLDGYSFWVVGMDGGQWTQASRNGYNLRDAVSRCTTQVYPKSWTAIYIALDNVGMWNLRTEFWARQYLGQQLYMRVYTDSTSLRDEYPIPRGARLCGKVANRHTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25814" e_stop="25261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="25814" e_stop="25261" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25814" stop="25261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAA</gDNA_template>
            <first_frame> A  G  L  Y  R  S  T  F  *  K  Q  K  I  I  K  N  D  M  *  N  *  I  K  M  S  T  S  Y  *  S  W  R  T  F  L  F  K  E  Q  K  Q  S  L  V  *  Y  L  G  V  P  F  F  F  F  *  F  L  L  I  L  A  D  S  C  V  I  *  N  K  K  L  *  *  Y  *  R  I  S  L  K  L  M  N  C  V  I  H  V  N  N  S  F  V  Y  L  I  *  K  L  N  V  S  V  T  A  N  Y  F  G  A  *  K  K  N  L  Y  N  I  T  T  N  P  V  *  F  H  K  Q  K  Y  N  K  *  I  T  *  E  E  S  N  F  L  K  I  L  N  K  N  *  V  V  L  E  L  F  I  L  W  L  W  *  D  L  D  D  K  L  T  S  S  T  *  L  L  L  A  S  T  D  K  E  *  R  K   </first_frame>
            <second_frame>  L  V  C  I  D  L  H  F  K  N  R  K  *  *  K  M  T  C  K  I  E  *  K  C  L  P  V  T  N  P  G  G  H  F  C  S  K  S  K  N  R  V  *  F  D  I  *  G  S  L  F  S  F  F  D  S  F  S  F  *  P  I  L  A  S  F  K  I  K  N  F  S  S  T  S  E  *  V  *  N  *  *  T  V  S  Y  M  L  T  T  V  L  Y  I  *  S  K  N  *  M  F  R  *  P  Q  T  I  S  V  R  K  K  K  T  Y  T  T  *  Q  Q  I  P  Y  N  F  I  N  K  N  I  I  S  E  *  L  R  K  R  A  I  F  *  K  F  S  T  K  T  R  *  Y  W  N  Y  L  F  C  G  F  G  K  I  W  T  T  S  *  Q  V  P  L  D  Y  C  W  L  L  L  T  K  N  R  E  K  </second_frame>
            <third_frame>   W  F  V  *  I  Y  I  L  K  T  E  N  N  K  K  *  H  V  K  L  N  K  N  V  Y  Q  L  L  I  L  E  D  I  F  V  Q  R  A  K  T  E  S  S  L  I  F  R  G  P  F  F  L  F  L  I  P  S  H  F  S  R  F  L  R  H  L  K  *  K  T  L  V  V  L  A  N  K  F  K  I  D  E  L  C  H  T  C  *  Q  Q  F  C  I  F  D  L  K  I  E  C  F  G  D  R  K  L  F  R  C  V  K  K  K  L  I  Q  H  N  N  K  S  R  I  I  S  *  T  K  I  *  *  V  N  N  L  G  R  E  Q  F  S  K  N  S  Q  Q  K  L  G  S  I  G  I  I  Y  F  V  A  L  V  R  F  G  R  Q  V  D  K  F  H  L  T  I  A  G  F  Y  *  Q  R  I  E  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26291" e_stop="26189"/>
            <exon e_start="24302" e_stop="24032"/>
            <exon e_start="23498" e_stop="23435"/>
            <exon e_start="23338" e_stop="23322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.916" e_score="0.961"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="0.974"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="0.844"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="26291" e_stop="26189" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.916">
            <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="24302" e_stop="24032" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24031" i_stop="23499" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="0.844">
            <gDNA_exon_boundary e_start="23498" e_stop="23435" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23338" e_stop="23322" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26291" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23498" stop="23435"/>
              <exon start="23338" stop="23322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG : GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG : TTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG : GGAAAACCTATAGATTG</gDNA_template>
            <first_frame> *  L  M  V  N  F  L  V  L  I  S  T  R  S  P  M  T  I  S  L  S  I  S  T  T  A  W  M  N  L  F  Y  F  P   : G  T  E  Y  K  T  E  E  T  H  L  *  M  E  Y  M  E  Q  H  A  Q  Y  R  Q  G  E  I  T  H  S  I  Y  K  *  R  I  K  *  G  V  S  I  T  S  H  L  L  H  S  T  K  L  L  V  V  L  E  G  L  G  F  S  A  G  L  E  S  P  S  L  F  R  T  L  Q  T  T  T  P  S  S  L  E  I  G  T  K  R  T  T  R :   S  L  M  A  F  L  S  M  V  V  V  L  M  V  L  H  S  Q  S  I  K  :  G  K  P  I  D   </first_frame>
            <second_frame>  D  *  W  S  I  S  W  S  *  Y  Q  L  G  H  Q  *  Q  S  R  Y  Q  Y  P  Q  Q  L  G  *  T  F  S  T  F  L  :  E  R  S  T  K  Q  K  K  L  I  C  R  W  S  I  W  N  N  M  P  N  T  A  R  E  K  *  H  I  Q  S  T  S  E  G  S  N  R  E  F  L  L  L  P  I  S  C  I  P  Q  S  C  W  W  F  W  R  D  *  D  S  Q  Q  A  *  N  P  R  P  F  S  G  P  C  K  R  L  H  H  P  H  W  R  L  V  Q  K  E  P  H   : V  P  *  W  H  S  Y  Q  W  S  W  S  *  W  C  Y  I  H  S  R  S  R :   E  N  L  *  I  </second_frame>
            <third_frame>   I  N  G  Q  F  P  G  P  D  I  N  S  V  T  N  D  N  L  V  I  N  I  H  N  S  L  D  E  P  F  L  L  S  W :   N  G  V  Q  N  R  R  N  S  F  V  D  G  V  Y  G  T  T  C  P  I  P  P  G  R  N  N  T  F  N  L  Q  V  K  D  Q  I  G  S  F  Y  Y  F  P  S  L  A  F  H  K  A  A  G  G  F  G  G  I  R  I  L  S  R  P  R  I  P  V  P  F  P  D  P  A  N  D  Y  T  I  L  I  G  D  W  Y  K  K  N  H  T  :  F  P  D  G  I  L  I  N  G  R  G  P  N  G  V  T  F  T  V  D  Q   : G  K  T  Y  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26289" stop="26189"/>
                    <exon start="24302" stop="24032"/>
                    <exon start="23498" stop="23435"/>
                    <exon start="23338" stop="23322"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGQFPGPDINSVTNDNLVINIHNSLDEPFLLSWNGVQNRRNSFVDGVYGTTCPIPPGRNNTFNLQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPANDYTILIGDWYKKNHTFPDGILINGRGPNGVTFTVDQGKTYRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25944" PGL_stop="26641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25944" e_stop="26641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25944" e_stop="26641" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25944" stop="26641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</gDNA_template>
            <first_frame> K  D  L  A  A  E  P  Y  *  P  D  R  F  A  Q  T  N  A  L  A  N  C  I  T  Q  K  Q  T  G  N  Y  P  K  I  I  P  M  *  L  S  L  F  F  W  K  L  I  Q  L  S  L  S  R  V  H  Q  M  *  L  V  I  F  N  V  I  N  A  T  H  *  M  *  T  E  K  W  K  F  Q  *  I  T  R  K  V  E  K  V  H  P  S  C  C  G  Y  *  *  R  D  C  H  W  *  P  S  *  Y  Q  D  Q  E  I  D  H  *  S  E  F  P  I  Q  T  *  H  K  F  H  R  Y  I  S  I  L  I  *  *  T  Q  I  H  I  *  Y  K  K  K  I  H  C  I  Y  R  N  E  P  V  E  E  L  R  E  D  I  *  F  H  K  *  H  S  N  R  N  I  Y  K  D  L  L  L  Q  Q  N  S  Q  L  I  P  L  K  T  P  L  R  R  I  L  A  A  T  Y  F  S  T  L  L  Y  V  S  T  A  I  C  Y  N  K  E  N  R  V  E  I  E  G  F  *  K  K  K  E  W  V   </first_frame>
            <second_frame>  K  I  W  L  Q  N  R  I  N  Q  T  D  L  P  K  P  M  H  L  P  I  V  *  P  R  N  K  L  E  I  T  Q  K  L  F  L  C  S  Y  P  C  F  F  G  N  *  Y  S  *  V  Y  H  E  S  I  K  C  D  *  *  S  S  T  *  S  T  Q  R  T  K  C  E  Q  K  N  G  S  F  S  E  L  P  G  K  *  K  R  F  I  Q  A  V  V  D  I  D  N  E  I  V  I  G  D  R  V  D  I  R  T  R  K  L  T  I  N  Q  N  S  L  Y  K  H  N  I  N  F  T  V  T  *  A  Y  *  S  N  K  P  R  S  I  Y  N  I  K  K  K  Y  I  A  F  T  E  T  N  L  L  R  N  S  E  R  I  Y  S  S  I  S  D  I  P  I  E  I  S  I  R  I  F  C  Y  N  R  I  P  N  *  Y  H  *  K  H  R  Y  G  E  F  *  R  Q  H  I  F  L  L  Y  F  M  L  A  L  Q  F  A  I  I  R  K  T  E  W  K  *  K  D  F  K  R  K  K  S  G  F  </second_frame>
            <third_frame>   R  F  G  C  R  T  V  L  T  R  Q  I  C  P  N  Q  C  T  C  Q  L  Y  N  P  E  T  N  W  K  L  P  K  N  Y  S  Y  V  A  I  L  V  F  L  E  I  D  T  V  K  F  I  T  S  P  S  N  V  I  S  D  L  Q  R  N  Q  R  N  A  L  N  V  N  R  K  M  E  V  S  V  N  Y  Q  E  S  R  K  G  S  S  K  L  L  W  I  L  I  T  R  L  S  L  V  T  E  L  I  S  G  P  G  N  *  P  L  I  R  I  P  Y  T  N  I  T  *  I  S  P  L  H  K  H  I  D  L  I  N  P  D  P  Y  I  I  *  K  K  N  T  L  H  L  Q  K  R  T  C  *  G  T  P  R  G  Y  I  V  P  *  V  T  F  Q  S  K  Y  L  *  G  S  S  A  T  T  E  F  P  I  N  T  T  K  N  T  A  T  A  N  F  S  G  N  I  F  F  Y  F  T  L  C  *  H  C  N  L  L  *  *  G  K  Q  S  G  N  R  R  I  L  K  E  K  R  V  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25946" stop="26281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGCRTVLTRQICPNQCTCQLYNPETNWKLPKNYSYVAILVFLEIDTVKFITSPSNVISDLQRNQRNALNVNRKMEVSVNYQESRKGSSKLLWILITRLSLVTELISGPGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="34197" PGL_stop="33654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34197" e_stop="33654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="34197" e_stop="33654" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34197" stop="33654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</gDNA_template>
            <first_frame> P  G  S  N  L  *  T  G  R  S  Q  P  P  V  M  A  I  P  A  P  P  S  S  S  A  V  P  G  G  Y  Q  K  S  K  R  S  L  G  F  F  A  N  A  M  K  R  K  D  S  F  L  Q  F  F  A  M  T  G  I  L  L  L  S  M  R  S  L  G  Q  K  Y  R  I  N  D  L  E  E  D  N  A  A  L  K  E  E  Q  E  G  L  V  H  R  M  N  H  I  K  Q  S  L  L  A  E  A  A  S  E  P  T  G  A  F  A  S  R  L  R  R  L  F  G  D  E  S  *  N  S  *  V  F  C  S  V  *  V  C  I  S  Y  I  C  P  I  L  A  E  F  I  D  F  I  I  W  D  F  G  D  F  I  L  T  W  S  V  K  F  E  A  F  Y  L  Q  I  S  *  F  F  T  S  K  </first_frame>
            <second_frame>  R  G  R  I  C  K  P  A  E  V  N  L  P  *  W  L  S  L  H  H  H  R  A  P  P  F  P  A  V  I  R  N  L  R  D  R  *  V  S  L  Q  T  Q  *  R  G  K  I  A  F  Y  N  S  S  P  *  Q  E  F  F  F  *  V  *  D  R  L  G  K  S  T  A  *  T  T  S  R  R  I  T  P  R  S  R  K  N  K  K  G  S  F  T  E  *  T  I  S  S  K  V  Y  L  L  K  L  L  V  S  P  L  V  P  L  L  P  V  F  A  A  S  L  V  M  K  A  E  T  V  E  F  F  V  L  S  E  F  V  F  H  I  Y  V  Q  Y  *  Q  N  L  *  I  L  *  F  G  I  L  E  T  S  S  *  P  G  V  L  N  L  K  P  F  I  F  R  Y  L  N  F  S  L  L  R </second_frame>
            <third_frame>   G  V  E  F  V  N  R  P  K  S  T  S  R  D  G  Y  P  C  T  T  I  E  L  R  R  S  R  R  L  S  E  I  *  E  I  V  R  F  L  C  K  R  N  E  E  E  R  *  L  F  T  I  L  R  H  D  R  N  S  S  S  E  Y  E  I  A  W  A  K  V  P  H  K  R  P  R  G  G  *  R  R  A  Q  G  R  T  R  R  A  R  S  P  N  E  P  Y  Q  A  K  S  T  C  *  S  C  *  *  A  H  W  C  L  C  F  P  S  S  P  P  L  W  *  *  K  L  K  Q  L  S  F  L  F  C  L  S  L  Y  F  I  Y  M  S  N  I  S  R  I  Y  R  F  Y  N  L  G  F  W  R  L  H  L  D  L  E  C  *  I  *  S  L  L  S  S  D  I  L  I  F  H  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34179" stop="33820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGRSQPPVMAIPAPPSSSAVPGGYQKSKRSLGFFANAMKRKDSFLQFFAMTGILLLSMRSLGQKYRINDLEEDNAALKEEQEGLVHRMNHIKQSLLAEAASEPTGAFASRLRRLFGDES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37346" PGL_stop="43719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37469" e_stop="37596"/>
            <exon e_start="38515" e_stop="38891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.733" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37469" e_stop="37596" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.733">
            <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="38515" e_stop="38891" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37469" stop="37596"/>
              <exon start="38515" stop="38891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37481" stop="37596"/>
              <exon start="38515" stop="38789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT : TAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</gDNA_template>
            <first_frame> K  Y  *  I  R  P  D  F  P  S  G  S  H  F  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V :   K  *  N  H  *  R  H  Q  E  D  A  S  F  T  R  I  A  *  S  S  S  Q  K  Q  G  F  V  A  S  S  *  T  I  E  L  R  I  S  K  K  S  S  K  L  F  T  R  V  N  L  D  Q  L  K  R  L  T  T  H  L  L  L  K  S  F  V  E  V  E  I  P  S  K  H  C  F  F  R  L  S  I  N  T  K  R  E  H  Q  D  H  H  P  N  S  L  D  G  F  V  N  F  P  R  T  P  T  F  K  S  I  P  I  R  E  R  H  D  P  *  N  S  K  T  I  S  </first_frame>
            <second_frame>  N  I  R  F  D  P  I  S  P  P  V  H  I  S  S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A   : L  S  R  I  I  K  G  I  K  K  M  Q  A  L  Q  G  *  L  S  R  A  H  K  N  K  D  L  *  L  L  P  K  L  *  S  *  E  Y  P  R  R  V  L  N  Y  L  Q  G  S  I  W  I  S  *  K  G  *  L  H  I  C  F  S  K  V  L  *  K  L  K  F  H  Q  N  I  V  S  S  V  C  P  *  T  P  K  E  S  T  R  I  I  T  Q  I  V  L  M  A  L  S  T  S  Q  E  L  Q  L  S  R  A  S  L  L  E  K  G  M  T  H  K  T  A  K  L  F  Q </second_frame>
            <third_frame>   I  L  D  S  T  R  F  P  L  R  F  T  F  R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  :  *  V  E  S  L  K  A  S  R  R  C  K  L  Y  K  D  S  L  V  E  L  T  K  T  R  I  C  S  F  F  L  N  Y  R  A  K  N  I  Q  E  E  F  *  I  I  Y  K  G  Q  S  G  S  A  E  K  A  N  Y  T  S  A  S  Q  K  F  C  R  S  *  N  S  I  K  T  L  F  L  P  F  V  H  K  H  Q  K  R  A  P  G  S  S  P  K  *  S  *  W  L  C  Q  L  P  K  N  S  N  F  Q  E  H  P  Y  *  R  K  A  *  P  I  K  Q  Q  N  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38609" stop="38872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIELRISKKSSKLFTRVNLDQLKRLTTHLLLKSFVEVEIPSKHCFFRLSINTKREHQDHHPNSLDGFVNFPRTPTFKSIPIRERHDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37346" e_stop="37596"/>
            <exon e_start="40983" e_stop="41135"/>
            <exon e_start="41456" e_stop="41573"/>
            <exon e_start="42527" e_stop="42631"/>
            <exon e_start="42744" e_stop="42868"/>
            <exon e_start="42961" e_stop="43029"/>
            <exon e_start="43283" e_stop="43432"/>
            <exon e_start="43524" e_stop="43593"/>
            <exon e_start="43671" e_stop="43719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.261" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.459" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.462" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.984" e_score="0.993"/>
          <exon-intron don_prob="0.473" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37346" e_stop="37596" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40983" e_stop="41135" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.261" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41456" e_stop="41573" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.459">
            <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42527" e_stop="42631" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.462">
            <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42744" e_stop="42868" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42961" e_stop="43029" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.952">
            <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="43283" e_stop="43432" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43524" e_stop="43593" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.473" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43594" i_stop="43670" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43671" e_stop="43719" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37346" stop="37596"/>
              <exon start="40983" stop="41135"/>
              <exon start="41456" stop="41573"/>
              <exon start="42527" stop="42631"/>
              <exon start="42744" stop="42868"/>
              <exon start="42961" stop="43029"/>
              <exon start="43283" stop="43432"/>
              <exon start="43524" stop="43593"/>
              <exon start="43671" stop="43719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT : GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT : TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT : ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG : GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG : GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG : GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTG : CCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATG : GTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</gDNA_template>
            <first_frame> S  I  V  V  T  R  I  P  I  N  P  S  P  F  Q  L  E  L  W  W  R  R  G  Y  K  P  D  K  *  I  L  D  P  S  G  M  L  *  R  A  G  K  Y  *  I  R  P  D  F  P  S  G  S  H  F  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V :   *  L  L  F  L  K  S  S  W  L  I  S  K  Q  L  K  G  Q  V  Q  V  M  I  L  V  E  V  L  N  Q  P  W  F  S  T  S  R  P  *  I  P  R  P  I  L  L  T  W  I  R  I :   C  K  F  Q  P  *  R  T  N  *  Q  V  R  L  V  Y  L  L  S  S  R  D  *  F  L  G  A  R  S  *  R  I  I  T  F  F  L  N  I  :  M  W  K  M  G  T  H  Y  I  *  C  *  G  S  L  N  C  K  L  H  Q  V  V  A  V  A  K  L  L  L  T  M  L  T  E  :  D  K  S  L  N  P  L  L  V  A  H  G  I  V  S  G  R  F  H  T  V  L  S  L  E  L  L  M  L  E  I  R  G  K  D  L  C  L  I  L  I  G :   L  L  G  Q  F  *  T  L  *  G  S  G  T  *  P  V  D  S  F  L  V  C  R :   P  A  L  Q  L  L  A  L  K  E  M  R  V  *  V  S  Q  E  V  S  N  L  G  R  H  F  L  V  N  L  C  R  K  *  C  K  F  L  W  G  Q  Q  *  L  S  P  Q  L  I  C :   P  F  W  I  P  *  S  R  F  L  N  S  W  T  G  W  S  M  Y  S  H  R  M  :  V  T  R  R  T  S  H  L  I  M  R  E  I  H  L  Q  </first_frame>
            <second_frame>  R  L  W  *  P  G  Y  P  *  T  H  L  R  F  S  W  S  S  G  G  V  A  A  T  S  R  I  N  K  F  *  I  L  L  E  C  Y  N  E  L  A  N  I  R  F  D  P  I  S  P  P  V  H  I  S  S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A   : C  S  C  C  F  *  S  L  H  G  *  S  A  S  S  *  R  V  K  Y  K  *  *  F  W  W  K  F  *  I  N  R  G  S  Q  H  Q  D  L  R  F  P  D  L  Y  F  *  R  G  *  E   : F  A  S  F  S  L  E  G  Q  T  S  K  S  D  W  C  T  C  *  A  A  E  T  N  F  *  G  Q  G  L  E  G  *  S  P  S  F  *  I  L :   C  G  K  W  G  H  T  T  F  S  A  E  A  V  S  I  A  S  S  I  R  W  *  Q  W  R  S  Y  Y  *  Q  C  *  Q  R :   T  R  A  S  T  H  C  W  W  L  T  E  S  Y  R  A  D  F  T  Q  C  C  P  W  N  F  *  C  W  R  S  G  G  R  T  C  A  *  S  *  S   : G  Y  W  G  S  F  E  H  C  R  D  R  E  H  D  R  W  T  A  S  W  C  A   : G  Q  H  S  S  S  S  P  S  R  K  *  E  F  K  S  V  R  K  S  A  I  W  A  G  I  F  W  S  I  F  A  A  S  S  A  N  S  S  G  G  S  N  S  C  P  L  N  *  F   : A  P  F  G  F  L  D  H  A  F  *  I  H  G  R  D  G  A  C  I  L  T  E  W :   L  P  A  E  P  V  T  *  *  C  G  R  S  T  C  S </second_frame>
            <third_frame>   D  C  G  D  P  D  T  H  K  P  I  S  V  S  A  G  A  L  V  A  S  R  L  Q  A  G  *  I  N  S  R  S  F  W  N  V  I  T  S  W  Q  I  L  D  S  T  R  F  P  L  R  F  T  F  R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  :  V  V  V  V  S  E  V  F  M  A  D  Q  Q  A  V  E  G  S  S  T  S  N  D  S  G  G  S  S  E  S  T  V  V  L  N  I  K  T  L  D  S  Q  T  Y  T  F  N  V  D  K  N  :  L  Q  V  S  A  L  K  D  K  L  A  S  Q  I  G  V  P  V  E  Q  Q  R  L  I  F  R  G  K  V  L  K  D  N  H  L  L  S  E  Y   : Y  V  E  N  G  D  T  L  H  L  V  L  R  Q  S  Q  L  Q  A  P  S  G  G  S  S  G  E  A  T  T  N  N  V  N  R   : G  Q  E  P  Q  P  T  A  G  G  S  R  N  R  I  G  Q  I  S  H  S  V  V  L  G  T  F  N  V  G  D  P  G  E  G  L  V  P  D  L  N  R  :  V  I  G  A  V  L  N  T  V  G  I  G  N  M  T  G  G  Q  L  P  G  V  Q  :  A  S  T  P  A  P  R  P  Q  G  N  E  S  L  S  Q  S  G  S  Q  Q  S  G  Q  A  F  S  G  Q  S  L  P  Q  V  V  Q  I  P  L  G  A  A  I  A  V  P  S  I  N  L  :  P  L  L  D  S  L  I  T  L  S  E  F  M  D  G  M  E  H  V  F  S  Q  N   : G  Y  P  P  N  Q  S  P  N  N  A  G  D  P  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37429" stop="37596"/>
                    <exon start="40983" stop="41135"/>
                    <exon start="41456" stop="41573"/>
                    <exon start="42527" stop="42631"/>
                    <exon start="42744" stop="42868"/>
                    <exon start="42961" stop="43029"/>
                    <exon start="43283" stop="43432"/>
                    <exon start="43524" stop="43593"/>
                    <exon start="43671" stop="43717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSRSFWNVITSWQILDSTRFPLRFTFRHSAKSLAKVDAIHSPLLLPISISGELLRVVVVSEVFMADQQAVEGSSTSNDSGGSSESTVVLNIKTLDSQTYTFNVDKNLQVSALKDKLASQIGVPVEQQRLIFRGKVLKDNHLLSEYYVENGDTLHLVLRQSQLQAPSGGSSGEATTNNVNRGQEPQPTAGGSRNRIGQISHSVVLGTFNVGDPGEGLVPDLNRVIGAVLNTVGIGNMTGGQLPGVQASTPAPRPQGNESLSQSGSQQSGQAFSGQSLPQVVQIPLGAAIAVPSINLPLLDSLITLSEFMDGMEHVFSQNGYPPNQSPNNAGDPPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46181" PGL_stop="49593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46181" e_stop="46238"/>
            <exon e_start="46321" e_stop="46392"/>
            <exon e_start="46505" e_stop="46628"/>
            <exon e_start="46751" e_stop="46924"/>
            <exon e_start="47091" e_stop="47245"/>
            <exon e_start="47330" e_stop="47479"/>
            <exon e_start="48389" e_stop="48982"/>
            <exon e_start="49066" e_stop="49221"/>
            <exon e_start="49303" e_stop="49593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.136" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.749" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.964" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.400" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="46181" e_stop="46238" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46239" i_stop="46320" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46392" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.136" acc_prob="0.953">
            <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46505" e_stop="46628" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46751" e_stop="46924" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.749">
            <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="47091" e_stop="47245" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47330" e_stop="47479" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.768">
            <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48389" e_stop="48982" e_length="594"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49066" e_stop="49221" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.400" acc_prob="0.975">
            <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="49303" e_stop="49593" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46181" stop="46238"/>
              <exon start="46321" stop="46392"/>
              <exon start="46505" stop="46628"/>
              <exon start="46751" stop="46924"/>
              <exon start="47091" stop="47245"/>
              <exon start="47330" stop="47479"/>
              <exon start="48389" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCCTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCT : GCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAG : CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG : CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG : GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATG : AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG : AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG : ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC : GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGTATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAATGTGGG</gDNA_template>
            <first_frame> C  P  S  I  R  A  W  K  D  D  I  D  S  Q  N  G  T  I  T   : C  *  I  F  S  K  C  W  S  C  S  L  H  I  F  H  R  A  E  P  H  N  G  S   : A  F  P  P  S  N  Q  F  T  L  R  *  L  S  C  C  S  T  *  P  R  Y  L  W  R  S  W  D  W  *  C  P  K  A  C  Q  Y  S  Y  T  C  S :   A  Y  Y  F  C  S  W  C  *  G  G  Q  W  R  W  S  T  R  *  T  W  *  W  N  *  F  W  P  N  K  G  S  A  C  W  K  Y  N  G  Y  S  C  G  T  K  A  C  C  Y  L  S  L  *  Y  A  T  A  W :   P  I  R  W  P  K  W  P  R  A  L  Y  C  V  W  C  *  E  *  Y  C  *  H  S  T  R  *  D  I  C  K  W  D  D  C  A  *  A  S  T  S  T  Q  C  S  R  E  R  G  *  N   : E  C  R  S  I  K  R  N  V  S  *  *  A  R  S  F  S  Q  C  R  K  S  S  K  V  *  S  G  V  R  *  S  *  *  I  L  I  C  A  P  W  I  R  A  R  R  F  A  A  *   : E  T  N  *  A  I  C  S  S  W  N  *  C  *  W  F  K  *  Q  Q  S  K  *  T  T  S  K  R  *  A  S  I  F  A  V  S  C  S  A  C  S  Q  G  K  *  A  C  Y  A  F  N  D  T  L  R  *  G  S  Y  G  D  Y  W  L  G  K  P  K  C  *  W  P  V  R  D  S  R  C  N  V  *  C  P  S  E  S  C  F  K  W  F  V  E  W  G  F  T  T  N  W  G  W  L  S  G  S  L  E  E  Y  D  A  A  I  H  S  K  S  S  N  D  E  H  C  K  S  D  C  A  A  D  *  H  P  G  S  W  K  H  V  F  R  A  R  W  W  Y  G  L  V  *  D  V  S  A  N  D  A  N  C  V  S  S  S  W  W  H  L  R  C  A  S  T  N  S  *  Y  C  T  E  A  W  *  E  Y  C  S  K  R  G  N  T  N  H  *  K  R  S   : D  *  S  S  *  G  C  P  R  N  R  E  Q  *  S  T  C  R  D  S  S  F  F  G  S  K  Y  R  I  F  A  S  P  W  K  *  R  S  K  S  G  *  *  T  I  Q  *  R  E  P  S  R   : R  I  H  A  D  A  A  *  *  C  F  S  A  I  Q  G  *  R  G  Q  I  G  N  I  L  N  F  S  S  H  F  L  I  L  F  L  K  N  V  I  I  L  G  S  Q  L  D  R  Q  R  Q  L  M  W  G  E  T  I  I  I  L  F  P  C  V  Y  V  H  T  Y  G  I  V  N  P  V  D  G  N  C  I  F  Y  V  *  S  K  Q  W  Y  H  F  I  L  S  M  W  </first_frame>
            <second_frame>  A  L  L  L  E  L  G  R  T  I  L  T  L  R  M  G  Q  S  P  :  A  E  S  S  V  N  A  G  P  A  V  Y  I  S  S  T  G  P  N  P  I  M  V  Q  :  P  F  P  L  Q  T  S  S  L  F  G  N  S  A  A  V  P  P  N  P  G  T  F  G  A  L  G  I  G  N  A  P  R  H  V  N  I  H  I  H  A   : A  P  I  T  S  A  V  G  A  R  A  A  N  G  D  G  A  H  G  E  R  G  N  G  T  D  S  G  Q  T  R  V  L  P  V  G  N  I  M  A  T  A  V  A  P  R  P  A  V  I  S  V  S  S  M  P  Q  P   : G  Q  S  D  G  P  S  G  Q  E  R  S  T  A  S  G  A  E  N  D  T  V  S  T  Q  L  D  E  T  S  A  S  G  M  T  V  P  E  P  L  P  A  H  S  V  P  G  R  E  D  K  M  :  S  V  G  Q  S  S  E  M  S  H  S  K  P  E  A  S  A  S  V  G  R  A  Q  R  S  S  Q  E  L  G  S  P  D  E  S  S  S  V  P  L  G  L  G  L  G  G  L  Q  P  K  :  K  R  T  K  Q  S  V  A  H  G  I  N  A  D  G  S  S  S  S  N  P  N  E  L  P  Q  R  D  E  R  Q  F  L  Q  S  L  A  A  L  A  A  R  G  N  E  P  A  M  P  S  M  T  H  L  D  R  G  V  M  G  T  I  G  S  G  N  R  N  V  D  G  Q  S  E  I  A  D  A  M  S  S  V  L  Q  S  P  A  L  N  G  L  L  S  G  V  S  Q  Q  T  G  A  G  S  P  D  L  L  R  N  M  M  Q  Q  F  T  Q  S  P  A  M  M  N  T  V  S  Q  I  A  Q  Q  I  D  T  Q  D  L  G  S  M  F  S  G  Q  G  G  G  M  D  L  S  R  M  F  Q  Q  M  M  P  I  V  S  Q  A  L  G  G  I  S  G  V  P  Q  R  I  P  N  I  A  Q  R  L  G  E  N  T  A  V  R  G  A  T  P  T  T  E  N  V  Q  :  I  D  L  H  E  V  A  Q  E  I  E  N  N  S  P  P  V  E  I  L  R  S  L  V  Q  S  T  E  S  L  H  H  H  G  S  S  D  L  S  L  A  D  E  L  S  S  E  E  N  L  A  D  :  E  F  M  Q  M  L  R  N  D  V  S  Q  R  F  K  D  K  E  G  K  *  G  I  Y  L  I  F  L  L  I  F  *  Y  Y  F  *  R  M  S  S  F  W  V  L  N  *  T  D  R  D  S  *  C  G  G  K  P  L  L  Y  Y  S  R  V  Y  M  Y  I  P  M  E  *  L  I  Q  W  M  G  T  V  F  S  M  F  N  Q  N  N  G  T  I  L  F  Y  Q  C  G </second_frame>
            <third_frame>   P  F  Y  *  S  L  E  G  R  Y  *  L  S  E  W  D  N  H  L :   L  N  L  Q  *  M  L  V  L  Q  F  T  Y  L  P  P  G  R  T  P  *  W  F  S :   L  S  P  F  K  P  V  H  S  S  V  T  Q  L  L  F  H  L  T  P  V  P  L  A  L  L  G  L  V  M  P  Q  G  M  S  I  F  I  Y  M  Q  :  R  L  L  L  L  Q  L  V  L  G  R  P  M  E  M  E  H  T  V  N  V  V  M  E  L  I  L  A  K  Q  G  F  C  L  L  E  I  *  W  L  Q  L  W  H  Q  G  L  L  L  S  Q  S  L  V  C  H  S  L  :  A  N  Q  M  A  Q  V  A  K  S  A  L  L  R  L  V  L  R  M  I  L  L  A  L  N  *  M  R  H  L  Q  V  G  *  L  C  L  S  L  Y  Q  H  T  V  F  P  G  E  R  I  K  * :   V  *  V  N  Q  A  K  C  L  I  V  S  Q  K  L  Q  P  V  *  E  E  L  K  G  L  V  R  S  *  V  V  L  M  N  P  H  L  C  P  L  D  *  G  S  E  V  C  S  L  R :   N  E  L  S  N  L  *  L  M  E  L  M  L  M  V  Q  V  A  A  I  Q  M  N  Y  L  K  E  M  S  V  N  F  C  S  L  L  Q  R  L  Q  P  G  E  M  S  L  L  C  L  Q  *  H  T  *  I  G  E  L  W  G  L  L  A  R  E  T  E  M  L  M  A  S  Q  R  *  Q  M  Q  C  L  V  S  F  R  V  L  L  *  M  V  C  *  V  G  F  H  N  K  L  G  L  A  L  R  I  S  *  G  I  *  C  S  N  S  L  K  V  Q  Q  *  *  T  L  *  V  R  L  R  S  R  L  T  P  R  I  L  E  A  C  F  P  G  K  V  V  V  W  T  C  L  G  C  F  S  K  *  C  Q  L  C  L  K  L  L  V  A  S  Q  V  C  L  N  E  F  L  I  L  H  R  G  L  V  R  I  L  Q  *  E  G  Q  H  Q  P  L  K  T  F  R :   L  I  F  M  R  L  P  K  K  S  R  T  I  V  H  L  *  R  F  F  V  L  W  F  K  V  Q  N  L  C  I  T  M  E  V  A  I  *  V  W  L  M  N  Y  P  V  K  R  T  *  P  T :   N  S  C  R  C  C  V  M  M  F  L  S  D  S  R  I  K  R  A  N  R  E  Y  T  *  F  F  F  S  F  S  D  I  I  S  K  E  C  H  H  F  G  F  S  I  R  Q  T  E  T  A  D  V  G  G  N  H  Y  Y  T  I  P  V  C  I  C  T  Y  L  W  N  S  *  S  S  G  W  E  L  Y  F  L  C  L  I  K  T  M  V  P  F  Y  S  I  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46182" stop="46238"/>
                    <exon start="46321" stop="46392"/>
                    <exon start="46505" stop="46628"/>
                    <exon start="46751" stop="46924"/>
                    <exon start="47091" stop="47245"/>
                    <exon start="47330" stop="47479"/>
                    <exon start="48389" stop="48982"/>
                    <exon start="49066" stop="49221"/>
                    <exon start="49303" stop="49365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLELGRTILTLRMGQSPAESSVNAGPAVYISSTGPNPIMVQPFPLQTSSLFGNSAAVPPNPGTFGALGIGNAPRHVNIHIHAAPITSAVGARAANGDGAHGERGNGTDSGQTRVLPVGNIMATAVAPRPAVISVSSMPQPGQSDGPSGQERSTASGAENDTVSTQLDETSASGMTVPEPLPAHSVPGREDKMSVGQSSEMSHSKPEASASVGRAQRSSQELGSPDESSSVPLGLGLGGLQPKKRTKQSVAHGINADGSSSSNPNELPQRDERQFLQSLAALAARGNEPAMPSMTHLDRGVMGTIGSGNRNVDGQSEIADAMSSVLQSPALNGLLSGVSQQTGAGSPDLLRNMMQQFTQSPAMMNTVSQIAQQIDTQDLGSMFSGQGGGMDLSRMFQQMMPIVSQALGGISGVPQRIPNIAQRLGENTAVRGATPTTENVQIDLHEVAQEIENNSPPVEILRSLVQSTESLHHHGSSDLSLADELSSEENLADEFMQMLRNDVSQRFKDKEGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49353" stop="49556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQIGNILNFSSHFLILFLKNVIILGSQLDRQRQLMWGETIIILFPCVYVHTYGIVNPVDGNCIFYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50727" PGL_stop="51682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50727" e_stop="50917"/>
            <exon e_start="51255" e_stop="51513"/>
            <exon e_start="51605" e_stop="51682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.518" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.844" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50727" e_stop="50917" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.518" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50918" i_stop="51254" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51255" e_stop="51513" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.844">
            <gDNA_intron_boundary i_start="51514" i_stop="51604" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51605" e_stop="51682" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50727" stop="50917"/>
              <exon start="51255" stop="51513"/>
              <exon start="51605" stop="51682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAG : CTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGG : GGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</gDNA_template>
            <first_frame> Y  F  S  T  F  C  K  C  C  *  S  L  R  R  Q  F  T  *  K  P  L  *  H  S  L  L  M  C  I  F  I  A  A  I  V  V  I  V  L  *  *  I  Q  I  F  *  G  L  N  H  R  I  E  C  P  F  V  E  N  T  V  Y  I  S :   C  S  G  K  K  S  R  R  T  T  G  D  R  G  S  D  C  G  S  S  *  S  T  *  S  S  A  Q  N  H  L  H  F  S  L  S  Y  R  H  Y  L  M  E  V  E  S  M  E  L  L  S  P  P  R  I  D  C  L  L  T  F  V  S  T  I  S  C  F  L  *  G  I  S  W  L  L  S  K  N  L  R  P  *  S  F  R  :  G  C  G  E  C  W  R  R  C  *  *  V  E  R  R  R  F  S  C  T  D  I  F  A  *  L </first_frame>
            <second_frame>  I  L  A  L  F  V  N  V  A  K  A  C  G  D  N  L  H  K  S  R  F  N  I  L  C  *  C  V  Y  L  L  P  L  L  L  L  *  C  C  D  E  S  R  Y  F  E  D  *  I  I  E  L  S  V  P  L  S  K  I  L  Y  I  S   : A  A  V  A  R  K  A  G  E  P  L  V  I  E  E  V  I  V  A  P  P  K  A  H  E  V  R  L  K  I  I  C  T  S  L  C  H  T  D  I  T  L  W  K  L  K  V  W  N  F  Y  L  P  R  E  S  I  V  Y  *  L  L  Y  Q  L  F  L  A  S  C  K  E  F  P  G  C  F  P  R  I  L  G  H  E  A  F  G :   V  V  E  S  V  G  E  D  V  D  E  L  K  E  G  D  S  V  V  P  I  F  L  P  D   </second_frame>
            <third_frame>   F  *  H  F  L  *  M  L  L  K  L  A  A  T  I  Y  I  K  A  A  L  T  F  F  A  N  V  Y  I  Y  C  R  Y  C  C  Y  S  A  V  M  N  P  D  I  L  R  T  K  S  S  N  *  V  S  L  C  R  K  Y  C  I  Y  Q  :  L  Q  W  Q  E  K  Q  E  N  H  W  *  *  R  K  *  L  W  L  L  L  K  H  M  K  F  G  S  K  S  F  A  L  L  S  V  I  P  T  L  P  Y  G  S  *  K  Y  G  T  F  I  S  P  E  N  R  L  F  I  N  F  C  I  N  Y  F  L  L  L  V  R  N  F  L  A  A  F  Q  E  S  *  A  M  K  L  S   : G  L  W  R  V  L  E  K  M  L  M  S  *  K  K  E  I  Q  L  Y  R  Y  F  C  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50872" stop="50917"/>
                    <exon start="51255" stop="51433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIELSVPLSKILYISAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKVWNFYLPRESIVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62813" PGL_stop="61566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62813" e_stop="62503"/>
            <exon e_start="62286" e_stop="61566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62813" e_stop="62503" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="62286" e_stop="61566" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62637" stop="62503"/>
              <exon start="62286" stop="61863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313321" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC : AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</gDNA_template>
            <first_frame> I  Q  F  N  I  Q  T  F  T  C  *  *  Y  L  F  D  *  K  K  E  E  E  V  W  L  I  N  T  N  R  T  R  H  P  L  K  R  L  L  V  P  T  W  K  L  L  I  V  V  C  L  I  S  L  E  K  K  K  R  K  N  Q  V  M  L  M  K  K  R  Q  F  H  L  S  C  L  K  K  L  T  *  V  K  K  W  N  P  R  R  R  K  R  N  F  I  D  Q  I  A  A  L  V  A  P :   V  M  R  R  K  K  L  E  R  M  D  R  R  S  R  R  R  K  R  R  D  *  R  I  R  L  R  K  K  Y  L  V  I  T  R  K  N  R  K  Q  R  I  P  Q  F  Q  L  R  N  T  R  K  Q  R  R  K  K  D  F  *  T  K  L  R  R  N  C  Q  V  A  G  I  R  R  R  R  K  W  R  R  H  H  H  H  H  R  L  R  W  S  M  R  R  R  G  R  R  R  R  D  F  W  T  K  L  R  R  N  Y  Q  D  T  T  Q  R  L  K  R  K  R  R  R  K  K  T  K  *  N  E  M  F  F  *  F  Y  F  W  D  V  M  I  V  F  L  C  C  F  G  F  *  V  F  F  I  S  F  T  F  V  F  F  G  F  *  R  I  I  V  S  T  V  F  D  I  S  V  C  K  C  I  C  M  C  L  M  C  M  K  F  D  N  M  D  L  *  N  A  V  D  F  I  L  I  D  F  F  V  L  W  F  S  C  F  I  S  N  S  V  I  *  R  R  I  V  Q  N  I  S  S  Y  Y  I  *  M  Q  I  L  E  I  L </first_frame>
            <second_frame>  S  N  S  I  F  K  L  S  L  V  D  N  I  F  L  I  E  K  K  K  K  K  Y  G  *  S  I  R  T  E  Q  G  I  R  *  R  D  C  W  Y  Q  R  G  S  Y  *  S  W  F  V  *  F  H  W  K  K  R  R  G  K  T  K  S  C  S  *  R  R  G  N  F  I  *  V  V  *  K  S  *  R  K  *  R  S  G  T  Q  G  G  G  K  E  T  S  S  I  K  *  Q  L  *  *  L   : Q  *  *  G  G  R  N  W  R  G  W  T  E  D  Q  E  E  E  K  E  G  I  E  G  *  D  *  G  K  N  I  W  *  S  Q  G  R  I  E  S  R  G  Y  L  S  S  S  *  E  I  R  G  N  R  G  E  K  R  I  S  R  Q  N  *  G  E  I  A  R  W  R  A  *  E  D  G  G  S  G  G  A  T  T  T  T  T  G  C  G  G  A  *  G  G  G  E  G  E  E  G  I  F  G  Q  N  *  G  E  I  T  R  I  P  L  K  G  *  R  G  K  G  E  G  K  R  L  N  E  M  K  C  F  F  N  F  T  F  G  M  L  *  L  C  F  C  V  V  L  V  F  K  C  F  S  F  P  S  L  L  F  F  L  D  S  E  G  *  L  L  V  L  Y  L  I  F  L  Y  V  S  A  Y  V  C  A  L  C  V  *  S  L  I  I  W  I  C  K  M  Q  L  I  L  S  L  L  T  S  L  F  Y  G  L  V  V  S  F  P  T  L  L  Y  E  D  V  L  F  K  T  Y  R  V  I  I  Y  K  C  K  S  *  R  Y   </second_frame>
            <third_frame>   P  I  Q  Y  S  N  F  H  L  L  I  I  S  F  *  L  K  K  R  R  R  S  M  A  D  Q  Y  E  Q  N  K  A  S  V  E  E  T  V  G  T  N  V  E  A  T  D  R  G  L  F  D  F  I  G  K  K  E  E  E  K  P  S  H  A  H  E  E  E  A  I  S  S  E  L  S  E  K  V  N  V  S  E  E  V  E  P  K  E  E  E  K  K  L  H  R  S  N  S  S  S  S  S  S  :  S  D  E  E  E  E  I  G  E  D  G  Q  K  I  K  K  K  K  K  K  G  L  K  D  K  I  K  E  K  I  S  G  D  H  K  E  E  S  K  A  E  D  T  S  V  P  V  E  K  Y  E  E  T  E  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  G  G  H  K  K  T  E  E  V  A  A  P  P  P  P  P  P  A  A  V  E  H  E  A  E  G  K  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  Y  H  S  K  A  E  E  E  K  E  K  E  K  D  *  M  K  *  N  V  F  L  I  L  L  L  G  C  Y  D  C  V  S  V  L  F  W  F  L  S  V  F  H  F  L  H  F  C  F  F  W  I  L  K  D  N  C  *  Y  C  I  *  Y  F  C  M  *  V  H  M  Y  V  P  Y  V  Y  E  V  *  *  Y  G  F  V  K  C  S  *  F  Y  P  Y  *  L  L  C  F  M  V  *  L  F  H  F  Q  L  C  Y  M  K  T  Y  C  S  K  H  I  E  L  L  Y  I  N  A  N  L  R  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62766" stop="62503"/>
                    <exon start="62286" stop="61909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRRRSMADQYEQNKASVEETVGTNVEATDRGLFDFIGKKEEEKPSHAHEEEAISSELSEKVNVSEEVEPKEEEKKLHRSNSSSSSSSDEEEEIGEDGQKIKKKKKKGLKDKIKEKISGDHKEESKAEDTSVPVEKYEETEEKKGFLDKIKEKLPGGGHKKTEEVAAPPPPPPAAVEHEAEGKEKKGFLDKIKEKLPGYHSKAEEEKEKEKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62813" e_stop="61680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62813" e_stop="61680" e_length="1134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313321" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</gDNA_template>
            <first_frame> I  Q  F  N  I  Q  T  F  T  C  *  *  Y  L  F  D  *  K  K  E  E  E  V  W  L  I  N  T  N  R  T  R  H  P  L  K  R  L  L  V  P  T  W  K  L  L  I  V  V  C  L  I  S  L  E  K  K  K  R  K  N  Q  V  M  L  M  K  K  R  Q  F  H  L  S  C  L  K  K  L  T  *  V  K  K  W  N  P  R  R  R  K  R  N  F  I  D  Q  I  A  A  L  V  A  P  *  V  S  L  S  F  I  I  N  I  Y  V  K  S  I  N  I  T  Y  A  F  Y  D  D  T  Y  I  I  L  L  H  Y  L  F  S  Q  Q  R  V  E  *  I  Y  R  L  L  F  L  A  G  M  N  K  L  *  V  I  I  D  M  L  Y  V  D  Y  I  C  *  L  I  C  R  V  M  R  R  K  K  L  E  R  M  D  R  R  S  R  R  R  K  R  R  D  *  R  I  R  L  R  K  K  Y  L  V  I  T  R  K  N  R  K  Q  R  I  P  Q  F  Q  L  R  N  T  R  K  Q  R  R  K  K  D  F  *  T  K  L  R  R  N  C  Q  V  A  G  I  R  R  R  R  K  W  R  R  H  H  H  H  H  R  L  R  W  S  M  R  R  R  G  R  R  R  R  D  F  W  T  K  L  R  R  N  Y  Q  D  T  T  Q  R  L  K  R  K  R  R  R  K  K  T  K  *  N  E  M  F  F  *  F  Y  F  W  D  V  M  I  V  F  L  C  C  F  G  F  *  V  F  F  I  S  F  T  F  V  F  F  G  F  *  R  I  I  V  S  T  V  F  D  I  S  V  C  K  C  I  C  M  C  L  M  C  M  K  F  D  N  M  D  L  *  N  A  V  D  F  I  L </first_frame>
            <second_frame>  S  N  S  I  F  K  L  S  L  V  D  N  I  F  L  I  E  K  K  K  K  K  Y  G  *  S  I  R  T  E  Q  G  I  R  *  R  D  C  W  Y  Q  R  G  S  Y  *  S  W  F  V  *  F  H  W  K  K  R  R  G  K  T  K  S  C  S  *  R  R  G  N  F  I  *  V  V  *  K  S  *  R  K  *  R  S  G  T  Q  G  G  G  K  E  T  S  S  I  K  *  Q  L  *  *  L  R  K  S  L  F  R  S  S  L  I  F  T  S  N  Q  *  I  *  H  T  P  F  M  M  I  H  I  L  Y  F  Y  T  I  C  F  L  N  K  E  S  S  K  F  T  V  Y  F  F  *  R  V  *  I  N  Y  R  *  S  L  I  C  C  T  *  I  I  Y  V  D  *  F  A  E  *  *  G  G  R  N  W  R  G  W  T  E  D  Q  E  E  E  K  E  G  I  E  G  *  D  *  G  K  N  I  W  *  S  Q  G  R  I  E  S  R  G  Y  L  S  S  S  *  E  I  R  G  N  R  G  E  K  R  I  S  R  Q  N  *  G  E  I  A  R  W  R  A  *  E  D  G  G  S  G  G  A  T  T  T  T  T  G  C  G  G  A  *  G  G  G  E  G  E  E  G  I  F  G  Q  N  *  G  E  I  T  R  I  P  L  K  G  *  R  G  K  G  E  G  K  R  L  N  E  M  K  C  F  F  N  F  T  F  G  M  L  *  L  C  F  C  V  V  L  V  F  K  C  F  S  F  P  S  L  L  F  F  L  D  S  E  G  *  L  L  V  L  Y  L  I  F  L  Y  V  S  A  Y  V  C  A  L  C  V  *  S  L  I  I  W  I  C  K  M  Q  L  I  L  S   </second_frame>
            <third_frame>   P  I  Q  Y  S  N  F  H  L  L  I  I  S  F  *  L  K  K  R  R  R  S  M  A  D  Q  Y  E  Q  N  K  A  S  V  E  E  T  V  G  T  N  V  E  A  T  D  R  G  L  F  D  F  I  G  K  K  E  E  E  K  P  S  H  A  H  E  E  E  A  I  S  S  E  L  S  E  K  V  N  V  S  E  E  V  E  P  K  E  E  E  K  K  L  H  R  S  N  S  S  S  S  S  S  V  S  L  S  F  V  H  H  *  Y  L  R  Q  I  N  K  Y  N  I  R  L  L  *  *  Y  I  Y  Y  T  F  T  L  F  V  F  S  T  K  S  R  V  N  L  P  F  T  F  S  S  G  Y  E  *  I  I  G  D  H  *  Y  V  V  R  R  L  Y  M  L  I  D  L  Q  S  D  E  E  E  E  I  G  E  D  G  Q  K  I  K  K  K  K  K  K  G  L  K  D  K  I  K  E  K  I  S  G  D  H  K  E  E  S  K  A  E  D  T  S  V  P  V  E  K  Y  E  E  T  E  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  G  G  H  K  K  T  E  E  V  A  A  P  P  P  P  P  P  A  A  V  E  H  E  A  E  G  K  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  Y  H  S  K  A  E  E  E  K  E  K  E  K  D  *  M  K  *  N  V  F  L  I  L  L  L  G  C  Y  D  C  V  S  V  L  F  W  F  L  S  V  F  H  F  L  H  F  C  F  F  W  I  L  K  D  N  C  *  Y  C  I  *  Y  F  C  M  *  V  H  M  Y  V  P  Y  V  Y  E  V  *  *  Y  G  F  V  K  C  S  *  F  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62325" stop="61909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVVRRLYMLIDLQSDEEEEIGEDGQKIKKKKKKGLKDKIKEKISGDHKEESKAEDTSVPVEKYEETEEKKGFLDKIKEKLPGGGHKKTEEVAAPPPPPPAAVEHEAEGKEKKGFLDKIKEKLPGYHSKAEEEKEKEKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62766" stop="62476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRRRSMADQYEQNKASVEETVGTNVEATDRGLFDFIGKKEEEKPSHAHEEEAISSELSEKVNVSEEVEPKEEEKKLHRSNSSSSSSVSLSFVHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="67503" PGL_stop="69347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67503" e_stop="67858"/>
            <exon e_start="68752" e_stop="69347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67503" e_stop="67858" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="68752" e_stop="69347" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67503" stop="67858"/>
              <exon start="68752" stop="69347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG : GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCACTTTATTT</gDNA_template>
            <first_frame> K  Q  I  S  Q  K  *  F  R  *  E  N  T  K  F  I  I  F  Q  R  K  L  T  G  I  E  F  L  L  Y  S  K  S  K  F  L  P  P  A  A  V  I  P  S  P  E  G  T  L  F  C  R  Y  T  N  F  R  R  N  C  I  *  *  I  A  K  K  F  K  E  E  E  R  K  Q  *  I  G  I  M  I  T  R  S  N  L  A  E  Q  L  R  E  Y  Q  I  R  S  K  H  D  W  A  S  V  S  F  F  S  S  T  S  N  L  T  S  T  A  S  R :   A  D  V  V  M  F  V  I  C  E  L  V  I  L  A  L  L  V  F  S  V  V  S  L  Y  F  T  H  L  K  L  A  F  I  L  V  S  T  S  L  L  L  L  V  C  V  T  I  A  K  Q  V  T  E  A  R  K  K  K  R  R  M  L  L  P  L  S  M  *  K  C  V  M  E  N  L  F  C  Y  A  Q  L  I  F  *  C  E  I  S  T  N  N  S  V  F  S  F  F  L  F  *  I  P  F  D  T  S  N  C  S  R  G  K  L  I  K  W  C  *  F  *  D  H  L  T  S  E  L  S  F  L  L  Y  T  S  *  V  F  G  L  V  D  K  A  S  C  K  F  N  L  S  P  K  M  *  F  S  C  T  F  I  L  K  S  L  F  S  L  T  F  Y  C  H  N  G  R  H  L  F  C  Q  H  C  S  *  I  M  K  N  I  D  L  *  C  L  H  F  I  </first_frame>
            <second_frame>  N  K  Y  L  K  N  S  S  G  K  K  I  Q  N  L  *  Y  S  K  E  N  *  L  V  S  N  F  F  F  T  A  S  Q  N  S  F  R  R  R  P  *  S  R  R  R  K  E  R  C  S  V  D  T  Q  I  S  D  G  I  A  F  D  R  L  Q  K  S  L  K  K  R  R  E  S  S  K  L  E  S  *  *  R  D  R  I  W  R  S  S  *  E  S  I  R  F  D  Q  S  T  I  G  L  R  S  P  S  F  P  P  P  L  I  S  H  L  Q  L  Q   : G  R  M  S  S  C  L  *  Y  V  S  W  L  S  W  H  S  W  F  S  L  *  F  H  C  T  S  R  I  *  S  L  H  L  S  *  *  V  L  A  C  Y  C  L  Y  V  *  Q  L  Q  S  K  L  Q  K  P  G  R  R  S  E  E  C  F  F  H  Y  Q  C  R  S  A  *  W  K  I  F  F  A  M  P  N  L  Y  F  N  V  K  S  Q  P  T  I  L  S  F  L  F  F  F  S  E  F  L  L  T  Q  V  I  V  V  E  A  S  *  L  N  G  A  D  F  E  I  I  *  H  Q  S  C  H  F  C  Y  I  L  H  R  C  L  G  L  L  I  K  L  H  V  S  L  T  S  V  L  K  C  N  S  R  V  P  S  Y  L  N  L  Y  S  V  L  H  F  I  V  T  M  E  G  I  C  S  V  N  I  V  P  K  S  *  R  I  L  I  F  D  V  C  T  L  F </second_frame>
            <third_frame>   T  N  I  S  K  I  V  Q  V  R  K  Y  K  I  Y  N  I  P  K  K  I  N  W  Y  R  I  S  S  L  Q  Q  V  K  I  P  S  A  G  G  R  D  P  V  A  G  R  N  A  V  L  *  I  H  K  F  Q  T  E  L  H  L  I  D  C  K  K  V  *  R  R  G  E  K  A  V  N  W  N  H  D  N  A  I  E  F  G  G  A  A  E  R  V  S  D  S  I  K  A  R  L  G  F  G  L  L  L  F  L  H  L  *  S  H  I  Y  S  F  K  :  G  G  C  R  H  V  C  N  M  *  A  G  Y  L  G  T  P  G  F  L  C  S  F  I  V  L  H  A  S  K  A  C  I  Y  L  S  K  Y  *  L  A  I  A  C  M  C  D  N  C  K  A  S  Y  R  S  Q  E  E  E  A  K  N  A  S  S  I  I  N  V  E  V  R  D  G  K  S  F  L  L  C  P  T  Y  I  L  M  *  N  L  N  Q  Q  F  C  L  F  F  F  S  F  L  N  S  F  *  H  K  *  L  *  *  R  Q  A  D  *  M  V  L  I  L  R  S  F  D  I  R  A  V  I  F  V  I  Y  F  I  G  V  W  A  C  *  *  S  F  M  *  V  *  P  Q  S  *  N  V  I  L  V  Y  L  H  T  *  I  S  I  Q  S  Y  I  L  L  S  Q  W  K  A  F  V  L  S  T  L  F  L  N  H  E  E  Y  *  S  L  M  S  A  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67731" stop="67858"/>
                    <exon start="68752" stop="68959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGIMITRSNLAEQLREYQIRSKHDWASVSFFSSTSNLTSTASRADVVMFVICELVILALLVFSVVSLYFTHLKLAFILVSTSLLLLVCVTIAKQVTEARKKKRRMLLPLSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78192" PGL_stop="80761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78192" e_stop="78364"/>
            <exon e_start="79707" e_stop="79752"/>
            <exon e_start="79842" e_stop="79889"/>
            <exon e_start="80486" e_stop="80761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78192" e_stop="78364" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79707" e_stop="79752" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79889" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80486" e_stop="80761" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78192" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78228" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG : GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG : GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG : ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</gDNA_template>
            <first_frame> *  F  P  V  Y  S  T  T  E  A  F  R  E  Q  R  L  T  K  R  R  E  R  E  M  G  G  G  D  G  H  G  V  T  F  K  G  I  T  V  H  Q  P  K  R  W  H  S  V  T  G  K  G  L  C  A  V  M  W :   F  W  I  L  Y  R  A  K  K  D  G  P  V  V  L  :  G  W  R  H  P  W  E  G  H  G  H  G  H  D  H  *  :  I  C  C  R  S  C  G  W  I  V  N  Q  Y  D  Q  C  *  C  L  S  W  K  I  Q  L  N  I  F  R  N  S  C  V  F  C  S  I  K  N  P  M  K  W  I  I  V  F  A  C  H  F  C  F  N  *  A  V  C  P  I  V  S  A  V  L  *  T  T  S  L  F  V  F  P  T  *  Q  Y  S  N  F  L  Y  I  R  L  L  S  L  S  P  P </first_frame>
            <second_frame>  N  F  Q  F  I  Q  P  L  K  L  F  G  S  S  D  *  R  R  E  E  K  E  R  W  E  V  E  M  D  M  A  *  P  S  K  A  S  L  Y  I  N  L  S  V  G  T  P  L  P  E  K  D  C  V  P  S  C   : G  F  G  F  Y  T  G  P  R  K  M  V  L  *  C  W :   A  G  G  I  P  G  K  A  M  A  M  V  M  T  I  R :   Y  A  V  E  A  V  A  G  L  *  T  N  M  I  N  A  N  V  F  L  G  K  F  S  *  I  S  F  E  T  V  V  F  F  V  Q  *  R  I  L  *  S  G  *  L  F  L  H  V  I  F  V  L  I  E  L  F  V  P  L  F  L  Q  C  C  E  Q  L  L  C  L  Y  F  Q  L  D  N  I  V  I  F  Y  T  *  D  F  L  V  F  L  L   </second_frame>
            <third_frame>   I  S  S  L  F  N  H  *  S  F  S  G  A  A  I  N  E  E  K  R  K  R  D  G  R  W  R  W  T  W  R  D  L  Q  R  H  H  C  T  S  T  *  A  L  A  L  R  Y  R  K  R  I  V  C  R  H  V  :  V  L  D  F  I  P  G  Q  E  R  W  S  C  S  V   : G  L  E  A  S  L  G  R  P  W  P  W  S  *  P  L   : D  M  L  *  K  L  W  L  D  C  K  P  I  *  S  M  L  M  S  F  L  E  N  S  V  E  Y  L  S  K  Q  L  C  F  L  F  N  K  E  S  Y  E  V  D  N  C  F  C  M  S  F  L  F  *  L  S  C  L  S  H  C  F  C  S  V  V  N  N  F  S  V  C  I  S  N  L  T  I  *  *  F  F  I  H  K  T  S  *  S  F  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78195" stop="78364"/>
                    <exon start="79707" stop="79752"/>
                    <exon start="79842" stop="79889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPVYSTTEAFREQRLTKRREREMGGGDGHGVTFKGITVHQPKRWHSVTGKGLCAVMWFWILYRAKKDGPVVLGWRHPWEGHGHGHDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80101" e_stop="80555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="80101" e_stop="80555" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80101" stop="80555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</gDNA_template>
            <first_frame> K  M  A  T  I  *  A  E  R  C  L  L  L  A  K  I  T  K  R  R  R  F  M  S  K  H  F  S  *  A  E  Y  V  V  H  R  T  S  L  I  V  G  R  S  S  L  A  P  A  Y  S  H  L  L  Q  S  L  H  Y  S  D  I  C  C  *  Y  Y  V  E  I  L  R  Y  S  K  T  Y  E  N  L  N  V  L  S  V  I  N  L  L  V  E  L  L  *  H  *  Y  L  Q  V  C  C  S  *  L  P  K  S  *  I  L  Y  F  C  L  T  N  P  F  W  *  I  V  L  I  D  F  A  D  M  L  *  K  L  W  L  D  C  K  P  I  *  S  M  L  M  S  F  L  E  N   </first_frame>
            <second_frame>  K  W  Q  L  F  K  Q  R  D  V  F  F  *  P  K  *  L  S  V  G  D  S  C  Q  N  I  F  L  E  L  N  M  W  F  I  G  R  V  *  L  L  V  D  H  H  L  H  Q  H  I  P  T  F  C  N  L  F  T  T  R  I  F  A  A  S  T  M  L  R  F  *  D  T  Q  K  P  M  K  I  L  M  C  C  Q  L  *  I  Y  W  L  N  Y  C  D  I  D  I  F  K  C  A  V  P  D  F  Q  S  L  E  S  S  I  F  V  *  L  T  H  S  G  E  L  C  *  L  I  L  Q  I  C  C  R  S  C  G  W  I  V  N  Q  Y  D  Q  C  *  C  L  S  W  K  I  </second_frame>
            <third_frame>   N  G  N  Y  L  S  R  E  M  S  S  F  S  Q  N  N  *  A  *  E  I  H  V  K  T  F  F  L  S  *  I  C  G  S  *  D  E  F  D  C  W  *  I  I  T  C  T  S  I  F  P  P  F  A  I  S  S  L  L  G  Y  L  L  L  V  L  C  *  D  F  E  I  L  K  N  L  *  K  S  *  C  A  V  S  Y  K  F  I  G  *  I  I  V  T  L  I  S  S  S  V  L  F  L  T  S  K  V  L  N  P  L  F  L  F  D  *  P  I  L  V  N  C  A  N  *  F  C  R  Y  A  V  E  A  V  A  G  L  *  T  N  M  I  N  A  N  V  F  L  G  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84762" PGL_stop="88048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84762" e_stop="86196"/>
            <exon e_start="86592" e_stop="86838"/>
            <exon e_start="86929" e_stop="87112"/>
            <exon e_start="87483" e_stop="87654"/>
            <exon e_start="87731" e_stop="88048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.999"/>
          <exon-intron don_prob="0.931" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.633" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="84762" e_stop="86196" e_length="1435"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86592" e_stop="86838" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86929" e_stop="87112" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.633">
            <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87483" e_stop="87654" e_length="172"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="87731" e_stop="88048" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84762" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="88048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG : GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG : AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG : AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG : ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGA</gDNA_template>
            <first_frame> K  Q  P  K  P  T  S  K  S  M  A  S  I  Q  F  L  K  N  *  Q  R  L  I  L  Y  F  L  H  I  *  L  Q  *  I  P  Q  I  *  Q  Q  S  C  S  T  N  G  Q  C  C  T  L  F  Q  F  L  G  F  P  N  L  C  F  S  S  H  T  *  N  L  K  V  F  P  S  S  L  Q  K  K  V  Y  S  S  S  I  N  S  Q  Q  K  I  Q  F  R  *  F  Q  E  C  S  I  *  S  C  Y  S  C  F  T  L  L  F  N  H  P  T  S  F  C  S  *  *  Y  N  P  S  S  T  T  T  S  D  *  S  *  S  T  K  T  *  C  L  K  L  I  T  L  C  S  K  Y  H  F  E  C  S  K  D  S  S  A  A  C  F  *  P  S  *  R  Y  S  M  E  V  Q  *  V  L  E  C  C  E  E  G  E  S  *  K  G  *  I  *  *  R  R  K  Y  P  S  A  Y  S  C  R  W  A  *  S  *  C  N  C  A  *  *  P  G  F  N  R  Y  F  G  D  E  W  C  *  Y  I  S  F  *  R  *  R  G  *  W  V  V  *  C  Y  W  E  L  V  V  P  Y  Y  C  F  C  W  V  V  F  P  F  Q  A  V  S  G  R  P  R  W  A  W  R  T  W  R  A  D  G  F  R  P  V  *  V  Q  V  S  G  G  A  *  N  W  S  D  F  C  *  C  C  W  C  *  S  S  *  I  G  V  T  G  S  G  *  F  L  E  K  S  *  *  V  Y  C  F  R  C  *  D  T  K  R  V  S  F  S  W  S  T  R  Y  W  K  D  P  F  S  *  S  S  S  W  *  G  W  C  A  I  F  L  L  C  S  V  R  V  C  *  V  V  C  G  C  G  S  F  *  S  *  G  F  V  *  E  G  E  V  *  S  T  L  Y  C  V  Y  *  *  D  *  C  C  G  K  A  K  R  C  R  S  W  R  W  K  *  *  E  G  A  D  Y  *  S  A  F  D  *  N  G  W  V  L  W  K  F  G  C  H  C  F  G  C  N  *  Q  A  *  C  S  *  F  C  L  V  E  T  W  K  V  *  S  T  S  D  C  G  *  A  *  C  C  W  *  S  Q  D  S  S   : G  A  F  *  R  K  G  P  C  Q  G  C  G  L  *  *  D  C  Q  E  N  T  R  F  H  R  C  R  F  A  K  L  D  E  *  S  S  H  P  C  S  *  A  *  P  K  G  N  K  *  R  *  D  I  R  C  S  R  E  D  N  C  W  P  G  E  E  K  C  C  C  L  R  *  E  E  E  A  G  S  L  S  * :   G  W  P  C  L  G  W  C  T  Y  A  R  V  *  S  C  C  Q  D  I  Y  N  S  S  R  P  S  R  W  S  H  L  L  C  P  Q  R  R  K  T  *  V  G  P  V  Q  Q  E  L  S  R  E  S  N  G  S  C  T  W  W  K  :  S  C  *  G  G  Y  F  W  T  R  Q  R  N  N  W  S  I  *  R  F  H  A  S  L  T  S  G  K  A  D  G  *  E  I  R  I  Q  Q  K  D  R  P  S  C  H  W  R  R  W  W  K  P  V  P  R  P  T   : D  V  N  P  E  R  L  L  H  G  N  S  R  C  G  R  C  *  S  K  G  I  G  *  K  G  V  R  K  S  Y  T  N  H  H  N  S  H  R  H  P  T  Q  A  C  S  A  V  D  R  E  R  N  C  *  W  *  R  V  H  E  P  F  H  *  W  Q  G  *  A  I  H  F  L  I  S  P  M  Y  L  H  H  S  I  V  L  T  N  I  H  T  N  V  H  I  E  K  F  I  F  H  I  L  T  N  Q  </first_frame>
            <second_frame>  S  N  P  N  Q  H  P  N  L  W  L  L  F  N  F  S  R  T  S  K  D  *  F  F  I  F  C  I  Y  S  Y  N  K  F  P  K  F  N  N  N  L  V  P  P  M  A  N  A  V  L  S  S  N  F  L  G  S  Q  I  F  V  S  P  P  T  P  K  T  S  R  Y  F  H  L  H  S  R  R  K  Y  I  V  P  Q  S  I  L  S  K  K  S  N  S  D  N  F  K  N  V  P  S  K  A  A  I  A  A  L  L  F  S  S  I  T  P  Q  A  F  A  L  D  N  T  T  P  A  A  P  P  Q  V  I  E  A  E  A  P  K  P  S  A  S  N  S  L  P  F  A  Q  N  I  I  L  N  A  P  K  T  Q  A  Q  P  A  S  D  L  P  E  G  T  Q  W  R  Y  S  E  F  L  N  A  V  K  K  G  K  V  E  R  V  R  F  S  K  D  G  S  T  L  Q  L  T  A  V  D  G  R  R  A  N  V  I  V  P  N  D  P  D  L  I  D  I  L  A  M  N  G  V  D  I  S  V  S  E  G  E  G  G  N  G  L  F  S  V  I  G  N  L  L  F  P  I  I  A  F  A  G  L  F  F  L  F  R  R  S  Q  G  G  P  G  G  P  G  G  L  G  G  P  M  D  F  G  R  S  K  S  K  F  Q  E  V  P  E  T  G  V  T  F  A  D  V  A  G  A  D  Q  A  K  L  E  L  Q  E  V  V  D  F  L  K  N  P  D  K  Y  T  A  L  G  A  K  I  P  K  G  C  L  L  V  G  P  P  G  T  G  K  T  L  L  A  R  A  V  A  G  E  A  G  V  P  F  F  S  C  A  A  S  E  F  V  E  L  F  V  G  V  G  A  S  R  V  R  D  L  F  E  K  A  K  S  K  A  P  C  I  V  F  I  D  E  I  D  A  V  G  R  Q  R  G  A  G  L  G  G  G  N  D  E  R  E  Q  T  I  N  Q  L  L  T  E  M  D  G  F  S  G  N  S  G  V  I  V  L  A  A  T  N  R  P  D  V  L  D  S  A  L  L  R  P  G  R  F  D  R  Q  V  T  V  D  R  P  D  V  A  G  R  V  R  I  L  Q  :  V  H  S  R  G  K  A  L  A  K  D  V  D  F  D  K  I  A  R  R  T  P  G  F  T  G  A  D  L  Q  N  L  M  N  E  A  A  I  L  A  A  R  R  D  L  K  E  I  S  K  D  E  I  S  D  A  L  E  R  I  I  A  G  P  E  K  K  N  A  V  V  S  D  E  K  K  K  L  V  A  Y  H   : E  A  G  H  A  L  V  G  A  L  M  P  E  Y  D  P  V  A  K  I  S  I  I  P  R  G  Q  A  G  G  L  T  F  F  A  P  S  E  E  R  L  E  S  G  L  Y  S  R  S  Y  L  E  N  Q  M  A  V  A  L  G  G  R :   V  A  E  E  V  I  F  G  Q  D  N  V  T  T  G  A  S  N  D  F  M  Q  V  S  R  V  A  R  Q  M  V  E  R  L  G  F  S  K  K  I  G  Q  V  A  I  G  G  G  G  G  N  P  F  L  G  Q  Q  :  M  S  T  Q  K  D  Y  S  M  A  T  A  D  V  V  D  A  E  V  R  E  L  V  E  K  A  Y  E  R  A  T  Q  I  I  T  T  H  I  D  I  L  H  K  L  A  Q  L  L  I  E  K  E  T  V  D  G  E  E  F  M  S  L  F  I  D  G  K  A  E  L  Y  I  S  *  F  H  Q  C  I  F  T  T  L  L  Y  *  Q  I  Y  I  Q  M  Y  T  L  R  N  L  F  F  I  F  *  Q  I  R </second_frame>
            <third_frame>   A  T  Q  T  N  I  Q  I  Y  G  F  Y  S  I  S  Q  E  L  A  K  T  N  S  L  F  F  A  Y  I  V  T  I  N  S  P  N  L  T  T  I  L  F  H  Q  W  P  M  L  Y  S  L  P  I  S  W  V  P  K  S  L  F  L  L  P  H  L  K  P  Q  G  I  S  I  F  T  P  E  E  S  I  *  F  L  N  Q  F  S  A  K  N  P  I  Q  I  I  S  R  M  F  H  L  K  L  L  *  L  L  Y  S  S  L  Q  S  P  H  K  L  L  L  L  I  I  Q  P  Q  Q  H  H  H  K  *  L  K  L  K  H  Q  N  L  V  P  Q  T  H  Y  P  L  L  K  I  S  F  *  M  L  Q  R  L  K  R  S  L  L  L  T  F  L  K  V  L  N  G  G  T  V  S  S  *  M  L  *  R  R  G  K  L  K  G  L  D  L  V  K  T  E  V  P  F  S  L  Q  L  *  M  G  V  E  L  M  *  L  C  L  M  T  R  I  *  S  I  F  W  R  *  M  V  L  I  Y  Q  F  L  K  V  K  G  V  M  G  C  L  V  L  L  G  T  C  C  S  L  L  L  L  L  L  G  C  F  S  F  S  G  G  L  R  A  A  Q  V  G  L  E  D  L  A  G  R  W  I  S  A  G  L  S  P  S  F  R  R  C  L  K  L  E  *  L  L  L  M  L  L  V  L  I  K  L  N  W  S  Y  R  K  W  L  I  S  *  K  I  L  I  S  I  L  L  *  V  L  R  Y  Q  K  G  V  F  *  L  V  H  Q  V  L  E  R  P  F  *  L  E  Q  *  L  V  R  L  V  C  H  F  S  L  V  Q  R  Q  S  L  L  S  C  L  W  V  W  E  L  L  E  L  G  I  C  L  R  R  R  S  L  K  H  L  V  L  C  L  L  M  R  L  M  L  W  E  G  K  E  V  Q  V  L  E  V  E  M  M  R  G  S  R  L  L  I  S  F  *  L  K  W  M  G  S  L  E  I  R  V  S  L  F  W  L  Q  L  T  G  L  M  F  L  I  L  P  C  *  D  L  E  G  L  I  D  K  *  L  W  I  G  L  M  L  L  V  E  S  G  F  F  R :   C  I  L  E  E  R  P  L  P  R  M  W  T  L  I  R  L  P  G  E  H  Q  V  S  P  V  Q  I  C  K  T  *  *  M  K  Q  P  S  L  Q  L  G  V  T  *  R  K  *  V  K  M  R  Y  P  M  L  *  R  G  *  L  L  A  R  R  R  K  M  L  L  S  Q  M  R  R  R  S  W  *  L  I  M  :  R  L  A  M  P  W  L  V  H  L  C  P  S  M  I  L  L  P  R  Y  L  *  F  L  E  A  K  P  V  V  S  P  S  L  P  P  A  K  K  D  L  S  R  A  C  T  A  G  A  I  *  R  I  K  W  Q  L  H  L  V  E   : E  L  L  R  R  L  F  L  D  K  T  T  *  Q  L  E  H  L  T  I  S  C  K  S  H  E  W  Q  G  R  W  L  R  D  *  D  S  A  K  R  *  A  K  L  P  L  E  E  V  V  E  T  R  S  *  A  N  R :   C  Q  P  R  K  T  T  P  W  Q  Q  P  M  W  S  M  L  K  *  G  N  W  L  K  R  R  T  K  E  L  H  K  S  S  Q  L  T  S  T  S  Y  T  S  L  L  S  C  *  *  R  K  K  L  L  M  V  K  S  S  *  A  F  S  L  M  A  R  L  S  Y  T  F  L  D  F  T  N  V  S  S  P  L  Y  C  I  N  K  Y  T  Y  K  C  T  H  *  E  I  Y  F  S  Y  F  D  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84829" stop="86196"/>
                    <exon start="86592" stop="86838"/>
                    <exon start="86929" stop="87112"/>
                    <exon start="87483" stop="87654"/>
                    <exon start="87731" stop="87952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2190</number_coding_nucleotides>
                  <number_encoded_amino_acids>730</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFIFCIYSYNKFPKFNNNLVPPMANAVLSSNFLGSQIFVSPPTPKTSRYFHLHSRRKYIVPQSILSKKSNSDNFKNVPSKAAIAALLFSSITPQAFALDNTTPAAPPQVIEAEAPKPSASNSLPFAQNIILNAPKTQAQPASDLPEGTQWRYSEFLNAVKKGKVERVRFSKDGSTLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGEGGNGLFSVIGNLLFPIIAFAGLFFLFRRSQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVEKAYERATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93665" PGL_stop="87897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93665" e_stop="93178"/>
            <exon e_start="92968" e_stop="92891"/>
            <exon e_start="92094" e_stop="91989"/>
            <exon e_start="90921" e_stop="90836"/>
            <exon e_start="90331" e_stop="90296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.989" e_score="0.965"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="93665" e_stop="93178" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92968" e_stop="92891" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92890" i_stop="92095" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92094" e_stop="91989" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.716" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="90921" e_stop="90836" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="90331" e_stop="90296" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93665" stop="93178"/>
              <exon start="92968" stop="92891"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTATAATAATCCCAAAAAAAAAATAAAAAAAAAAGATTAAAAAAGCTATTTTTATGATTAATTTAATCATATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG : GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAG : AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG : GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT : GCACTCGATATGATACGGGGAAAAAACATTCTTCTA</gDNA_template>
            <first_frame> A  V  *  *  S  Q  K  K  N  K  K  K  R  L  K  K  L  F  L  *  L  I  *  S  Y  N  K  V  V  F  L  F  L  L  F  F  L  V  G  *  G  L  R  L  V  M  M  F  N  *  R  D  S  *  F  G  S  S  W  V  V  V  N  L  Q  S  *  R  S  *  A  Q  R  K  I  S  V  M  G  W  *  T  H  E  L  L  T  A  P  A  P  E  L  L  S  E  M  V  G  F  R  C  F  L  S  F  R  F  L  S  S  K  Q  L  R  I  T  S  V  Q  N  L  L  F  L  K  V  E  K  R  L  R  I  W  F  T  R  G  G  C  R  I  G  G  G  S  L  L  R  S  L  L  N  R  H  G  L  I  L  N  S  L  R :   M  K  H  Q  V  L  E  I  *  G  I  K  G  W  L  I  *  L  G  T  A  L  M  G  M  R :   V  A  I  P  V  F  L  V  L  G  *  *  K  I  A  G  M  V  K  V  I  A  R  T  L  R  I  H  L  L  S  I  *  E  M  :  E  E  S  L  K  K  V  L  F  S  A  M  E  L  S  F  W  T  C  *  V  E  N  I  F  L  L  V  M :   H  S  I  *  Y  G  E  K  T  F  F   </first_frame>
            <second_frame>  L  Y  N  N  P  K  K  K  I  K  K  K  D  *  K  S  Y  F  Y  D  *  F  N  H  I  I  K  L  Y  S  F  F  C  C  F  F  W  L  G  E  V  *  D  W  L  *  C  L  I  E  G  I  L  D  L  G  H  H  G  L  L  S  I  F  N  L  E  G  V  E  L  R  E  R  S  A  S  W  G  G  K  R  T  S  F  *  R  H  R  R  R  S  C  C  R  R  W  W  G  S  G  V  F  *  V  F  A  F  *  A  Q  S  S  Y  E  *  L  Q  F  R  I  Y  C  F  *  K  W  R  K  G  S  E  Y  G  L  Q  G  E  V  A  E  S  A  V  D  R  C  *  E  V  Y  *  I  G  M  A  *  S  *  T  V  C   : G  *  S  I  R  C  W  K  F  E  A  *  K  A  G  *  F  N  W  V  L  L  *  W  G  *   : E  W  R  S  P  S  F  L  F  W  A  D  E  K  *  Q  G  W  *  K  L  *  H  E  P  C  V  Y  T  S  *  V  F  K  K  W :   K  S  H  S  R  K  C  C  F  Q  L  W  N  C  P  F  G  L  A  K  W  K  T  Y  S  S  W  S   : C  T  R  Y  D  T  G  K  K  H  S  S  </second_frame>
            <third_frame>   C  I  I  I  P  K  K  K  *  K  K  K  I  K  K  A  I  F  M  I  N  L  I  I  *  *  S  C  I  P  F  F  V  V  F  F  G  W  V  R  F  K  I  G  Y  D  V  *  L  K  G  F  L  I  W  V  I  M  G  C  C  Q  S  S  I  L  K  E  L  S  S  E  K  D  Q  R  H  G  V  V  N  A  R  A  S  N  G  T  G  A  G  A  A  V  G  D  G  G  V  P  V  F  S  E  F  S  L  S  E  L  K  A  A  T  N  N  F  S  S  E  F  I  V  S  E  S  G  E  K  A  P  N  M  V  Y  K  G  R  L  Q  N  R  R  W  I  A  V  K  K  F  T  K  S  A  W  P  D  P  K  Q  F  A  :  D  E  A  S  G  V  G  N  L  R  H  K  R  L  A  N  L  I  G  Y  C  S  D  G  D  E  :  S  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  Y  T  P  P  E  Y  L  R  N   : G  R  V  T  Q  E  S  V  V  F  S  Y  G  T  V  L  L  D  L  L  S  G  K  H  I  P  P  G  H  :  A  L  D  M  I  R  G  K  N  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93519" stop="93178"/>
                    <exon start="92968" stop="92891"/>
                    <exon start="92094" stop="91989"/>
                    <exon start="90921" stop="90836"/>
                    <exon start="90331" stop="90296"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGFLIWVIMGCCQSSILKELSSEKDQRHGVVNARASNGTGAGAAVGDGGVPVFSEFSLSELKAATNNFSSEFIVSESGEKAPNMVYKGRLQNRRWIAVKKFTKSAWPDPKQFADEASGVGNLRHKRLANLIGYCSDGDESGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTQESVVFSYGTVLLDLLSGKHIPPGHALDMIRGKNILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92956" e_stop="92833"/>
            <exon e_start="92350" e_stop="92217"/>
            <exon e_start="92094" e_stop="91989"/>
            <exon e_start="90921" e_stop="90836"/>
            <exon e_start="90331" e_stop="90143"/>
            <exon e_start="89820" e_stop="89656"/>
            <exon e_start="89570" e_stop="89457"/>
            <exon e_start="88469" e_stop="87897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.811" e_score="0.935"/>
          <exon-intron don_prob="0.963" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="92956" e_stop="92833" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.811">
            <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92350" e_stop="92217" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92094" e_stop="91989" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.716" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90921" e_stop="90836" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90331" e_stop="90143" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90142" i_stop="89821" i_length="322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89820" e_stop="89656" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89570" e_stop="89457" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89456" i_stop="88470" i_length="987"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="87897" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92956" stop="92833"/>
              <exon start="92350" stop="92217"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90143"/>
              <exon start="89820" stop="89656"/>
              <exon start="89570" stop="89457"/>
              <exon start="88469" stop="87897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACT : GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG : AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG : GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT : GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGAT : GTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAG : TTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAG : TTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</gDNA_template>
            <first_frame> G  V  G  N  L  R  H  K  R  L  A  N  L  I  G  Y  C  S  D  G  D  E  R  L  L  V  A  E  Y  M  P  N  D  T  L  A  K  H  L  F  H   : W  E  N  Q  T  L  E  W  A  M  R  L  R  V  A  L  Y  I  A  E  A  L  D  Y  C  S  S  E  G  R  P  L  Y  H  D  L  N  A  Y  R  V  L  F  D  E  :  S  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  Y  T  P  P  E  Y  L  R  N   : G  R  V  T  Q  E  S  V  V  F  S  Y  G  T  V  L  L  D  L  L  S  G  K  H  I  P  P  G  H  :  A  L  D  M  I  R  G  K  N  I  L  L  L  M  D  S  H  L  E  G  N  F  S  T  E  E  A  T  V  V  F  D  L  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  T  K  D  L  V  S  T  L  G  P  L  Q  S  K  P  D  :  V  A  S  H  V  M  L  G  I  P  K  S  E  E  A  P  P  T  P  Q  H  P  L  S  A  M  G  D  A  C  S  R  M  D  L  T  A  I  H  Q  I  L  V  M  T  H  Y  K  D  D  E  L  T  N  E  :  L  S  F  Q  E  W  T  Q  Q  M  R  D  M  L  E  A  R  K  R  G  D  L  A  F  R  D  K  D  F  K  T  A  I  D  C  Y  S  Q  :  F  V  D  V  G  T  M  V  S  P  T  V  Y  A  R  R  S  L  C  Y  L  M  C  D  Q  P  D  A  A  L  R  D  A  M  Q  A  Q  C  V  H  P  D  W  S  T  A  F  Y  M  Q  A  V  A  L  S  K  L  D  M  H  K  D  A  A  D  M  L  N  E  A  A  I  L  E  E  K  R  R  G  G  R  A  S  *  *  Y  S  L  L  Y  H  S  F  G  P  I  S  Y  S  C  H  H  K  I  S  P  N  F  C  I  I  C  F  E  C  D  C  L  R  T  M  Y  N  K  G  R  E  S  F  A  L  L  V  Y  A  Y  V  S  F  A  L  *  F  V  K  I  *  K  I  N  F  S  M  C  T  F  V  C  I  F  V  N  T  I  E  W  *  R  Y  I  G  E  I  K  K  C  I  A  Q  P  C  H  Q  *  K  G  S  *  T  L  H </first_frame>
            <second_frame>  V  L  E  I  *  G  I  K  G  W  L  I  *  L  G  T  A  L  M  G  M  R  G  C  L  *  L  S  T  C  Q  M  I  H  L  Q  S  I  Y  F  T  :  G  R  I  K  P  L  S  G  L  C  V  *  E  W  L  Y  I  L  L  K  H  W  T  T  V  A  V  K  V  D  H  Y  T  M  T  *  M  H  I  E  F  S  L  M  R :   V  A  I  P  V  F  L  V  L  G  *  *  K  I  A  G  M  V  K  V  I  A  R  T  L  R  I  H  L  L  S  I  *  E  M  :  E  E  S  L  K  K  V  L  F  S  A  M  E  L  S  F  W  T  C  *  V  E  N  I  F  L  L  V  M :   H  S  I  *  Y  G  E  K  T  F  F  Y  *  W  I  H  I  W  R  E  I  S  L  Q  K  R  Q  L  L  Y  L  I  W  L  H  D  A  Y  S  M  N  P  G  S  D  Q  I  P  K  T  S  F  Q  H  L  V  H  C  K  A  N  L  M :   L  H  L  M  *  C  W  V  F  P  R  V  R  K  L  H  Q  L  H  S  T  L  F  L  Q  W  V  M  L  V  R  E  W  I  S  Q  L  F  I  R  F  W  *  *  H  I  I  K  T  M  N  *  Q  M  S :   C  L  S  K  S  G  L  N  K  *  G  I  C  *  R  Q  E  S  V  V  T  W  H  F  G  T  R  T  L  K  L  P  *  I  A  I  L  S :   L  *  M  W  E  R  W  C  L  Q  L  F  M  H  E  E  A  F  V  I  S  C  V  I  N  Q  M  L  P  L  E  M  Q  C  K  H  N  V  F  T  Q  T  G  Q  L  H  F  T  C  R  Q  L  P  C  R  S  *  T  C  T  K  M  Q  L  T  C  *  M  R  L  Q  F  *  K  R  K  D  A  E  G  V  H  L  D  N  T  L  S  C  I  I  L  L  A  L  S  V  I  L  V  I  T  K  L  A  Q  I  S  V  S  F  V  L  S  V  I  V  L  E  L  C  I  T  K  E  E  N  H  L  L  Y  W  Y  M  R  M  S  V  L  H  S  D  L  S  K  Y  E  K  *  I  S  Q  C  V  H  L  Y  V  Y  L  L  I  Q  *  S  G  E  D  T  L  V  K  S  R  N  V  *  L  S  L  A  I  N  E  K  A  H  E  L  F   </second_frame>
            <third_frame>   C  W  K  F  E  A  *  K  A  G  *  F  N  W  V  L  L  *  W  G  *  E  V  A  C  S  *  V  H  A  K  *  Y  T  C  K  A  S  I  S  L :   G  E  S  N  P  *  V  G  Y  A  F  K  S  G  S  I  Y  C  *  S  I  G  L  L  *  Q  *  R  S  T  T  I  P  *  L  E  C  I  *  S  S  L  *  *   : E  W  R  S  P  S  F  L  F  W  A  D  E  K  *  Q  G  W  *  K  L  *  H  E  P  C  V  Y  T  S  *  V  F  K  K  W :   K  S  H  S  R  K  C  C  F  Q  L  W  N  C  P  F  G  L  A  K  W  K  T  Y  S  S  W  S   : C  T  R  Y  D  T  G  K  K  H  S  S  I  N  G  F  T  F  G  G  K  F  L  Y  R  R  G  N  C  C  I  *  S  G  F  T  M  L  T  V  *  T  Q  G  A  T  K  Y  Q  R  P  R  F  N  T  W  S  I  A  K  Q  T  *   : C  C  I  S  C  N  V  G  Y  S  Q  E  *  G  S  S  T  N  S  T  A  P  S  F  C  N  G  *  C  L  F  E  N  G  S  H  S  Y  S  S  D  F  G  N  D  T  L  *  R  R  *  T  D  K  *   : V  V  F  P  R  V  D  S  T  N  E  G  Y  V  R  G  K  K  A  W  *  L  G  I  S  G  Q  G  L  *  N  C  H  R  L  L  F  S   : V  C  R  C  G  N  D  G  V  S  N  C  L  C  T  K  K  P  L  L  S  H  V  *  S  T  R  C  C  P  *  R  C  N  A  S  T  M  C  S  P  R  L  V  N  C  I  L  H  A  G  S  C  P  V  E  A  R  H  A  Q  R  C  S  *  H  V  E  *  G  C  N  S  R  R  E  K  T  R  R  A  C  I  L  I  I  L  S  L  V  S  F  F  W  P  Y  Q  L  F  L  S  S  Q  N  *  P  K  F  L  Y  H  L  F  *  V  *  L  S  *  N  Y  V  *  Q  R  K  R  I  I  C  S  I  G  I  C  V  C  Q  F  C  T  L  I  C  Q  N  M  K  N  K  F  L  N  V  Y  I  C  M  Y  I  C  *  Y  N  R  V  V  K  I  H  W  *  N  Q  E  M  Y  S  S  A  L  P  S  M  K  R  L  M  N  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92956" stop="92833"/>
                    <exon start="92350" stop="92217"/>
                    <exon start="92094" stop="91989"/>
                    <exon start="90921" stop="90836"/>
                    <exon start="90331" stop="90143"/>
                    <exon start="89820" stop="89656"/>
                    <exon start="89570" stop="89457"/>
                    <exon start="88469" stop="88218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVGNLRHKRLANLIGYCSDGDERLLVAEYMPNDTLAKHLFHWENQTLEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDESGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTQESVVFSYGTVLLDLLSGKHIPPGHALDMIRGKNILLLMDSHLEGNFSTEEATVVFDLASRCLQYEPRERPNTKDLVSTLGPLQSKPDVASHVMLGIPKSEEAPPTPQHPLSAMGDACSRMDLTAIHQILVMTHYKDDELTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIDCYSQFVDVGTMVSPTVYARRSLCYLMCDQPDAALRDAMQAQCVHPDWSTAFYMQAVALSKLDMHKDAADMLNEAAILEEKRRGGRAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88249" stop="88022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKDAEGVHLDNTLSCIILLALSVILVITKLAQISVSFVLSVIVLELCITKEENHLLYWYMRMSVLHSDLSKYEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="99710" PGL_stop="98370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99710" e_stop="98370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="99710" e_stop="98370" e_length="1341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99710" stop="98370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCACACAATAGAGAAAGAAAATTAAAGATGATGCATACATGTATATTTTGCTTTATTGTATTTTTTT</gDNA_template>
            <first_frame> K  M  G  K  E  K  T  L  S  K  S  R  T  M  A  P  R  M  V  A  N  F  R  R  S  L  S  F  P  N  H  P  N  H  S  N  K  P  K  K  S  F  H  V  R  S  A  S  L  P  C  R  S  H  P  L  I  S  Q  L  K  D  D  L  N  E  L  K  S  W  A  F  K  P  Q  N  R  T  S  N  W  I  C  D  G  L  N  Q  L  K  I  V  H  E  S  L  D  D  L  L  L  L  P  Q  T  R  E  S  L  N  G  H  S  D  L  V  E  K  L  L  D  D  F  L  H  F  V  D  V  Y  G  I  F  Q  T  L  I  L  T  F  K  E  E  H  L  A  A  Q  V  R  *  F  Y  L  L  N  Y  M  A  E  N  L  N  I  I  K  *  T  F  R  S  Y  F  L  N  T  I  V  R  A  F  A  *  N  G  L  F  F  I  S  F  F  K  F  C  S  Q  L  A  K  W  A  K  G  S  V  I  H  R  Y  *  I  G  E  F  H  L  I  I  H  *  L  Y  K  F  I  I  F  H  T  N  S  R  G  I  K  S  L  I  M  C  V  I  I  M  F  I  I  L  V  I  D  I  *  L  Y  Y  V  S  T  G  S  C  E  A  *  R  *  I  *  D  C  F  V  C  *  S  T  E  K  N  G  *  G  N  G  *  T  C  V  E  C  T  M  Y  R  E  I  Y  Y  T  S  T  N  Y  T  N  P  R  W  R  C  R  V  S  R  S  D  E  R  H  N  R  S  N  T  I  S  F  N  C  T  F  *  W  T  W  S  I  N  G  I  C  K  T  I  M  F  M  D  W  I  R  K  E  D  K  K  I  E  R  K  *  R  N  C  G  I  C  R  N  G  I  G  E  F  V  E  K  K  *  R  R  *  R  G  E  N  C  D  *  K  N  A  *  I  G  R  L  Y  L  W  D  *  K  L  W  G  E  S  V  *  E  F  N  *  C  *  S  F  I  A  *  C  I  H  T  I  E  K  E  N  *  R  *  C  I  H  V  Y  F  A  L  L  Y  F  F </first_frame>
            <second_frame>  K  W  E  K  K  K  H  Y  Q  N  R  E  Q  W  L  L  E  W  W  L  I  F  A  D  L  F  L  S  Q  I  T  Q  I  T  Q  I  N  P  K  N  P  S  M  F  D  L  L  V  C  H  V  D  L  I  H  *  F  L  S  S  K  M  I  *  T  S  S  N  H  G  L  L  S  P  K  I  E  L  Q  I  G  F  V  M  D  S  I  N  S  K  L  F  M  N  L  S  M  I  C  F  F  F  H  K  H  V  N  H  *  T  D  I  P  I  W  S  R  S  F  *  M  I  S  F  T  S  S  T  F  M  E  S  S  R  R  *  Y  S  L  S  R  K  N  I  *  Q  L  R  Y  D  N  F  I  Y  L  I  I  W  P  K  I  *  I  *  *  N  R  L  S  D  H  I  F  *  I  L  L  S  A  P  L  H  K  M  A  F  F  L  F  H  F  L  N  F  V  P  N  *  L  S  G  L  K  D  Q  *  F  T  A  T  R  L  E  N  S  T  L  L  S  I  N  C  I  S  S  L  F  F  I  Q  I  L  E  V  S  N  L  *  *  C  V  *  L  *  C  L  *  F  *  L  L  I  F  N  Y  I  M  F  Q  Q  V  A  V  R  R  K  D  E  S  K  I  A  S  Y  A  K  A  L  R  K  M  A  K  E  M  D  K  L  A  L  N  V  Q  C  I  G  K  Y  I  I  P  Q  Q  T  I  P  I  P  D  G  D  A  E  L  A  E  V  M  K  D  I  I  E  V  T  Q  L  V  S  I  A  L  F  N  G  L  G  V  S  M  A  Y  A  K  P  S  C  S  W  I  G  L  G  K  K  T  K  K  L  K  E  N  E  G  I  V  E  F  V  E  M  E  L  E  N  L  L  R  K  N  K  G  D  E  E  V  K  I  V  T  K  K  M  H  E  L  E  D  C  I  C  G  I  E  N  C  G  E  K  V  F  R  S  L  I  N  A  R  V  S  L  L  N  V  F  T  Q  *  R  K  K  I  K  D  D  A  Y  M  Y  I  L  L  Y  C  I  F   </second_frame>
            <third_frame>   N  G  K  R  K  N  T  I  K  I  E  N  N  G  S  S  N  G  G  *  F  S  Q  I  S  F  F  P  K  S  P  K  S  L  K  *  T  Q  K  I  L  P  C  S  I  C  *  S  A  M  S  I  S  S  I  N  F  S  A  Q  R  *  F  K  R  A  Q  I  M  G  F  *  A  P  K  S  N  F  K  L  D  L  *  W  T  Q  S  T  Q  N  C  S  *  I  S  R  *  S  A  S  S  S  T  N  T  *  I  I  K  R  T  F  R  F  G  R  E  A  S  R  *  F  P  S  L  R  R  R  L  W  N  L  P  D  V  D  T  H  F  Q  G  R  T  F  S  S  S  G  T  I  I  L  F  T  *  L  Y  G  R  K  F  K  Y  N  K  I  D  F  P  I  I  F  F  K  Y  Y  C  P  R  L  C  I  K  W  P  F  F  Y  F  I  F  *  I  L  F  P  I  S  *  V  G  *  R  I  S  N  S  P  L  L  D  W  R  I  P  P  Y  Y  P  L  I  V  *  V  H  Y  F  S  Y  K  F  S  R  Y  Q  I  F  D  N  V  C  D  Y  N  V  Y  N  F  S  Y  *  Y  L  I  I  L  C  F  N  R  *  L  *  G  V  K  M  N  L  R  L  L  R  M  L  K  H  *  E  K  W  L  R  K  W  I  N  L  R  *  M  Y  N  V  *  G  N  I  L  Y  L  N  K  L  Y  Q  S  Q  M  E  M  Q  S  *  Q  K  *  *  K  T  *  *  K  *  H  N  *  F  Q  L  H  F  L  M  D  L  E  Y  Q  W  H  M  Q  N  H  H  V  H  G  L  D  *  E  R  R  Q  K  N  *  K  K  M  K  E  L  W  N  L  *  K  W  N  W  R  I  C  *  E  K  I  K  E  M  K  R  *  K  L  *  L  K  K  C  M  N  W  K  I  V  F  V  G  L  K  I  V  G  R  K  C  L  G  V  *  L  M  L  E  F  H  C  L  M  Y  S  H  N  R  E  R  K  L  K  M  M  H  T  C  I  F  C  F  I  V  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98962" stop="98426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIFNYIMFQQVAVRRKDESKIASYAKALRKMAKEMDKLALNVQCIGKYIIPQQTIPIPDGDAELAEVMKDIIEVTQLVSIALFNGLGVSMAYAKPSCSWIGLGKKTKKLKENEGIVEFVEMELENLLRKNKGDEEVKIVTKKMHELEDCICGIENCGEKVFRSLINARVSLLNVFTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99710" stop="99258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGKEKTLSKSRTMAPRMVANFRRSLSFPNHPNHSNKPKKSFHVRSASLPCRSHPLISQLKDDLNELKSWAFKPQNRTSNWICDGLNQLKIVHESLDDLLLLPQTRESLNGHSDLVEKLLDDFLHFVDVYGIFQTLILTFKEEHLAAQVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99466" e_stop="99267"/>
            <exon e_start="98929" e_stop="98547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99466" e_stop="99267" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98929" e_stop="98547" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99466" stop="99267"/>
              <exon start="98929" stop="98547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323822" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAG : GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAAT</gDNA_template>
            <first_frame> F  V  M  D  S  I  N  S  K  L  F  M  N  L  S  M  I  C  F  F  F  H  K  H  V  N  H  *  T  D  I  P  I  W  S  R  S  F  *  M  I  S  F  T  S  S  T  F  M  E  S  S  R  R  *  Y  S  L  S  R  K  N  I  *  Q  L  R :   *  L  *  G  V  K  M  N  L  R  L  L  R  M  L  K  H  *  E  K  W  L  R  K  W  I  N  L  R  *  M  Y  N  V  *  G  N  I  L  Y  L  N  K  L  Y  Q  S  Q  M  E  M  Q  S  *  Q  K  *  *  K  T  *  *  K  *  H  N  *  F  Q  L  H  F  L  M  D  L  E  Y  Q  W  H  M  Q  N  H  H  V  H  G  L  D  *  E  R  R  Q  K  N  *  K  K  M  K  E  L  W  N  L  *  K  W  N  W  R  I  C  *  E  K  I  K  E  M  K  R  *  K  </first_frame>
            <second_frame>  L  *  W  T  Q  S  T  Q  N  C  S  *  I  S  R  *  S  A  S  S  S  T  N  T  *  I  I  K  R  T  F  R  F  G  R  E  A  S  R  *  F  P  S  L  R  R  R  L  W  N  L  P  D  V  D  T  H  F  Q  G  R  T  F  S  S  S   : G  S  C  E  A  *  R  *  I  *  D  C  F  V  C  *  S  T  E  K  N  G  *  G  N  G  *  T  C  V  E  C  T  M  Y  R  E  I  Y  Y  T  S  T  N  Y  T  N  P  R  W  R  C  R  V  S  R  S  D  E  R  H  N  R  S  N  T  I  S  F  N  C  T  F  *  W  T  W  S  I  N  G  I  C  K  T  I  M  F  M  D  W  I  R  K  E  D  K  K  I  E  R  K  *  R  N  C  G  I  C  R  N  G  I  G  E  F  V  E  K  K  *  R  R  *  R  G  E  N </second_frame>
            <third_frame>   C  D  G  L  N  Q  L  K  I  V  H  E  S  L  D  D  L  L  L  L  P  Q  T  R  E  S  L  N  G  H  S  D  L  V  E  K  L  L  D  D  F  L  H  F  V  D  V  Y  G  I  F  Q  T  L  I  L  T  F  K  E  E  H  L  A  A  Q  :  V  A  V  R  R  K  D  E  S  K  I  A  S  Y  A  K  A  L  R  K  M  A  K  E  M  D  K  L  A  L  N  V  Q  C  I  G  K  Y  I  I  P  Q  Q  T  I  P  I  P  D  G  D  A  E  L  A  E  V  M  K  D  I  I  E  V  T  Q  L  V  S  I  A  L  F  N  G  L  G  V  S  M  A  Y  A  K  P  S  C  S  W  I  G  L  G  K  K  T  K  K  L  K  E  N  E  G  I  V  E  F  V  E  M  E  L  E  N  L  L  R  K  N  K  G  D  E  E  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99464" stop="99267"/>
                    <exon start="98929" stop="98549"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDGLNQLKIVHESLDDLLLLPQTRESLNGHSDLVEKLLDDFLHFVDVYGIFQTLILTFKEEHLAAQVAVRRKDESKIASYAKALRKMAKEMDKLALNVQCIGKYIIPQQTIPIPDGDAELAEVMKDIIEVTQLVSIALFNGLGVSMAYAKPSCSWIGLGKKTKKLKENEGIVEFVEMELENLLRKNKGDEEVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="105713" PGL_stop="106171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105713" e_stop="106171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105713" e_stop="106171" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105713" stop="106171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACAAGACTACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</gDNA_template>
            <first_frame> A  T  R  L  L  S  I  H  E  I  F  N  N  K  K  R  P  V  F  V  Y  R  K  S  K  V  L  *  T  C  R  W  T  *  K  K  L  R  G  R  L  E  N  Y  T  *  F  T  K  L  *  W  V  W  *  *  T  *  S  T  N  L  R  H  W  R  S  L  P  I  S  S  F  F  H  *  F  C  E  I  F  H  T  L  L  H  F  *  I  F  N  S  L  S  C  C  S  Q  F  I  T  C  H  L  V  E  Y  F  L  P  T  T  L  P  L  S  M  G  I  T  E  L  K  G  V  I  G  P  V  S  P  A  P  S  S  V  Q  F  I  H  R  E  P  N  T  V  V  S  A  R  R  C  A </first_frame>
            <second_frame>  L  Q  D  Y  L  V  S  M  R  Y  S  T  T  K  K  D  L  Y  L  S  T  E  N  L  R  F  C  R  P  V  D  G  R  R  K  N  C  V  G  G  *  K  T  I  H  S  L  L  N  Y  N  G  F  G  D  K  P  N  R  Q  I  *  D  T  G  G  A  S  Q  *  A  V  F  F  I  N  S  A  K  S  F  T  H  C  S  I  F  R  F  S  T  R  C  L  A  A  A  S  L  L  P  A  T  W  S  N  I  F  S  Q  P  L  S  H  S  A  W  A  S  Q  S  *  R  V  L  L  V  Q  S  V  Q  L  H  P  L  Y  S  L  F  I  V  S  P  T  Q  W  *  V  H  G  G  V   </second_frame>
            <third_frame>   Y  K  T  T  *  Y  P  *  D  I  Q  Q  Q  K  K  T  C  I  C  L  Q  K  I  *  G  F  V  D  L  *  M  D  V  E  K  T  A  W  E  A  R  K  L  Y  I  V  Y  *  T  I  M  G  L  V  I  N  L  I  D  K  F  E  T  L  E  E  P  P  N  K  Q  F  F  S  L  I  L  R  N  L  S  H  T  A  P  F  L  D  F  Q  L  V  V  L  L  Q  P  V  Y  Y  L  P  L  G  R  I  F  S  P  N  H  S  P  T  Q  H  G  H  H  R  A  E  G  C  Y  W  S  S  Q  S  S  S  I  L  C  T  V  Y  S  S  *  A  Q  H  S  G  E  C  T  E  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105859" stop="106137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIMGLVINLIDKFETLEEPPNKQFFSLILRNLSHTAPFLDFQLVVLLQPVYYLPLGRIFSPNHSPTQHGHHRAEGCYWSSQSSSILCTVYSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105977" stop="106171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFNSLSCCSQFITCHLVEYFLPTTLPLSMGITELKGVIGPVSPAPSSVQFIHREPNTVVSARRCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="112409" PGL_stop="109351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112409" e_stop="112348"/>
            <exon e_start="112261" e_stop="112136"/>
            <exon e_start="111503" e_stop="111382"/>
            <exon e_start="111162" e_stop="111123"/>
            <exon e_start="111015" e_stop="110941"/>
            <exon e_start="110717" e_stop="110425"/>
            <exon e_start="109376" e_stop="109351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.701" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112409" e_stop="112348" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.701" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112347" i_stop="112262" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112261" e_stop="112136" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.982">
            <gDNA_intron_boundary i_start="112135" i_stop="111504" i_length="632"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111503" e_stop="111382" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111162" e_stop="111123" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111015" e_stop="110941" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="110717" e_stop="110425" e_length="293"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110424" i_stop="109377" i_length="1048"/>
          </intron>
          <exon e_serial="7" e_score="0.808">
            <gDNA_exon_boundary e_start="109376" e_stop="109351" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112348"/>
              <exon start="112261" stop="112136"/>
              <exon start="111503" stop="111382"/>
              <exon start="111162" stop="111123"/>
              <exon start="111015" stop="110941"/>
              <exon start="110717" stop="110425"/>
              <exon start="109376" stop="109351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTG : GTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATG : GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA : GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG : CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA : GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA : ATCAAAAAAAAGAAAAGAAAAAAGAA</gDNA_template>
            <first_frame> E  R  S  A  Q  K  Q  A  K  S  G  T  E  N  A  G  W  Y  E  N  W :   W  E  K  Y  D  A  K  G  W  T  E  K  G  A  H  K  Y  G  R  L  N  E  Q  S  W  W  E  K  W  G  E  H  Y  D  G  R  G  S  V  L  K  W :   T  D  K  W  A  E  T  E  L  G  T  K  W  G  D  K  W  E  E  K  F  F  A  G  I  G  S  R  Q  G  E  T  W  H  V  S  P  V  G  D   : R  W  S  R  T  W  G  E  E  H  F  G  N  G :   K  V  H  K  Y  G  K  S  T  T  G  E  S  W  D  I  V  V  D  E  G  T  Y  Y  E :   A  E  P  H  Y  G  W  A  D  V  V  G  N  S  S  Q  L  L  S  I  Q  P  R  D  R  P  P  G  V  F  P  S  M  D  F  G  P  S  L  P  P  E  D  E  L  P  P  T  L  S  Q  *  Q  V  G  F  F  S  N  K  V  D  V  D  A  S  W  Q  I  F  R  F  *  L  *  L  S  T  L  D  V  T  K  H  T  L  P  I  H  L  V  H  S  F  R  D  L   : N  Q  K  K  E  K  K  K  E </first_frame>
            <second_frame>  K  G  V  H  K  N  K  Q  N  Q  A  L  R  T  L  G  G  M  K  I   : G  G  K  S  M  M  Q  R  V  G  Q  R  K  G  H  T  N  M  A  D  *  T  N  N  R  G  G  R  N  G  E  N  I  M  M  E  E  D  L  F  L  N   : G  Q  I  S  G  R  K  L  S  L  E  Q  N  G  E  T  S  G  K  R  N  F  S  L  E  L  V  R  G  K  E  R  L  G  M  C  H  P  L  V  I  :  D  G  L  G  H  G  E  R  S  T  S  E  M   : A  K  C  T  S  T  A  R  A  R  Q  V  K  V  G  T  S  L  W  M  K  E  L  T  T   : R  L  N  L  T  T  D  G  Q  M  L  *  A  I  H  P  S  Y  C  Q  S  N  L  E  T  D  R  P  V  C  S  H  Q  W  I  L  V  H  L  C  L  Q  K  M  S  C  L  P  P  C  H  N  D  K  L  V  S  S  Q  T  R  L  M  L  M  L  V  G  K  F  S  D  F  D  C  N  C  Q  L  S  M  *  Q  N  I  L  C  L  F  I  *  F  I  L  L  E  I  *  :  I  K  K  K  K  R  K  K   </second_frame>
            <third_frame>   K  E  C  T  K  T  S  K  I  R  H  *  E  R  W  V  V  *  K  L  :  V  G  K  V  *  C  K  G  L  D  R  E  R  G  T  Q  I  W  Q  I  K  R  T  I  V  V  G  E  M  G  R  T  L  *  W  K  R  I  C  S  *  M  :  D  R  *  V  G  G  N  *  A  W  N  K  M  G  R  Q  V  G  R  E  I  F  R  W  N  W  F  A  A  R  R  D  L  A  C  V  T  R  W  *  * :   M  V  *  D  M  G  R  G  A  L  R  K  W  :  Q  S  A  Q  V  R  Q  E  H  D  R  *  K  L  G  H  R  C  G  *  R  N  L  L  R  :  G  *  T  S  L  R  M  G  R  C  C  R  Q  F  I  P  V  I  V  N  P  T  S  R  Q  T  A  R  C  V  P  I  N  G  F  W  S  I  S  A  S  R  R  *  V  A  S  H  L  V  T  M  T  S  W  F  L  L  K  Q  G  *  C  *  C  *  L  A  N  F  Q  I  L  I  V  I  V  N  S  R  C  D  K  T  Y  F  A  Y  S  F  S  S  F  F  *  R  F  K :   S  K  K  R  K  E  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112409" stop="112348"/>
                    <exon start="112261" stop="112136"/>
                    <exon start="111503" stop="111382"/>
                    <exon start="111162" stop="111123"/>
                    <exon start="111015" stop="110941"/>
                    <exon start="110717" stop="110561"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERSAQKQAKSGTENAGWYENWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTDKWAETELGTKWGDKWEEKFFAGIGSRQGETWHVSPVGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEGTYYEAEPHYGWADVVGNSSQLLSIQPRDRPPGVFPSMDFGPSLPPEDELPPTLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="115609" PGL_stop="112577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115609" e_stop="115216"/>
            <exon e_start="113853" e_stop="113762"/>
            <exon e_start="113668" e_stop="113475"/>
            <exon e_start="112797" e_stop="112758"/>
            <exon e_start="112614" e_stop="112577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115609" e_stop="115216" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113853" e_stop="113762" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.986">
            <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113668" e_stop="113475" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="113474" i_stop="112798" i_length="677"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112797" e_stop="112758" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112757" i_stop="112615" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112614" e_stop="112577" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115609" stop="115216"/>
              <exon start="113853" stop="113762"/>
              <exon start="113668" stop="113475"/>
              <exon start="112797" stop="112758"/>
              <exon start="112614" stop="112577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA : GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG : ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACG : TGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCG : GTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</gDNA_template>
            <first_frame> V  S  L  N  L  H  L  N  F  T  H  F  *  G  F  I  N  T  F  F  Y  L  Q  W  H  S  F  E  Q  *  W  R  L  R  L  L  P  E  D  S  Q  R  P  *  G  R  L  S  C  P  Q  L  R  C  S  L  H  Y  L  M  V  L  *  N  F  E  G  R  R  G  V  V  P  E  V  S  S  V  Y  N  V  V  V  Q  I  L  *  C  Q  L  E  V  V  V  V  L  G  M  A  L  I  K  V  M  M  G  G  S  I  L  R  R  S  L  L  I  I  *  E  L  K  L  L  P  Q  C  P  L  H  L  L   : S  L  D  L  F  Q  S  Q  K  N  S  F  P  D  A  P  Q  E  V  Q  A  L  S  P  V  I  L  H  Q  N  E  :  T  R  A  L  L  M  R  K  I  G  A  S  V  C  *  M  I  M  S  M  K  L  E  *  T  R  T  A  V  H  G  I  G  R  V  G  K  T  L  V  T  M  D  T  D  A  D  G  Q  G  W  V  V  R  A  V  M  V  P  *  N  G  K  K  R :   G  G  R  K  V  I  G  L  D  T  K  N  S  :  V  L  R  N  P  G  K  M  L  K  G  T   </first_frame>
            <second_frame>  F  L  *  I  S  I  *  T  S  L  T  S  R  A  L  S  T  H  S  S  T  S  N  G  I  L  L  S  N  N  G  G  F  G  F  F  Q  R  I  H  S  A  H  R  G  G  *  A  A  H  S  *  G  V  P  Y  I  T  *  W  F  C  R  I  S  K  E  E  E  E  *  Y  R  R  F  L  Q  Y  T  M  L  L  F  R  F  C  D  A  N  *  R  W  *  W  F  W  E  W  R  *  *  R  *  *  W  E  V  R  F  *  E  D  H  C  *  L  Y  E  N  S  S  F  F  P  N  A  L  C  I  S  S  :  V  *  I  C  F  K  A  R  K  I  L  F  P  M  H  P  K  K  F  R  P  *  V  P  *  F  S  T  K  T  R :   H  G  H  C  *  *  E  R  L  G  H  Q  Y  A  K  *  *  C  Q  *  N  W  S  K  R  G  R  Q  Y  M  V  S  G  E  W  G  R  P  W  *  Q  W  I  P  M  P  M  D  K  D  G  W  S  E  Q  *  W  Y  L  R  M  E  R  N   : V  V  G  E  K  *  L  D  W  I  Q  R  T  R :   C  *  E  I  R  E  K  C  *  R  G  R  </second_frame>
            <third_frame>   F  S  E  S  P  S  E  L  H  S  L  L  G  L  Y  Q  H  I  L  L  P  P  M  A  F  F  *  A  I  M  A  A  S  A  S  S  R  G  F  T  A  P  I  G  A  A  K  L  P  T  V  E  V  F  P  T  L  P  N  G  F  V  E  F  R  R  K  K  R  S  S  T  G  G  F  F  S  I  Q  C  C  C  S  D  S  V  M  P  I  R  G  G  S  G  S  G  N  G  V  D  K  G  D  D  G  R  F  D  S  K  K  I  T  A  N  Y  M  R  T  Q  A  S  S  P  M  P  F  A  S  P  Q :   S  R  F  V  S  K  P  E  K  F  F  S  R  C  T  P  R  S  S  G  P  K  S  R  D  S  P  P  K  R   : D  T  G  I  A  N  E  K  D  W  G  I  S  M  L  N  D  N  V  N  E  T  G  V  N  E  D  G  S  T  W  Y  R  E  S  G  E  D  L  G  D  N  G  Y  R  C  R  W  T  R  M  G  G  Q  S  S  D  G  T  L  E  W  K  E  T  :  W  W  E  K  S  D  W  T  G  Y  K  E  L   : G  V  E  K  S  G  K  N  V  E  G  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115526" stop="115216"/>
                    <exon start="113853" stop="113762"/>
                    <exon start="113668" stop="113475"/>
                    <exon start="112797" stop="112758"/>
                    <exon start="112614" stop="112577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIMAASASSRGFTAPIGAAKLPTVEVFPTLPNGFVEFRRKKRSSTGGFFSIQCCCSDSVMPIRGGSGSGNGVDKGDDGRFDSKKITANYMRTQASSPMPFASPQSRFVSKPEKFFSRCTPRSSGPKSRDSPPKRDTGIANEKDWGISMLNDNVNETGVNEDGSTWYRESGEDLGDNGYRCRWTRMGGQSSDGTLEWKETWWEKSDWTGYKELGVEKSGKNVEGDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="124715" PGL_stop="118642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124715" e_stop="124586"/>
            <exon e_start="124498" e_stop="124415"/>
            <exon e_start="124351" e_stop="124219"/>
            <exon e_start="123666" e_stop="123555"/>
            <exon e_start="122624" e_stop="122525"/>
            <exon e_start="121791" e_stop="121664"/>
            <exon e_start="120931" e_stop="120862"/>
            <exon e_start="119873" e_stop="119785"/>
            <exon e_start="119571" e_stop="119526"/>
            <exon e_start="119230" e_stop="119157"/>
            <exon e_start="119025" e_stop="118955"/>
            <exon e_start="118881" e_stop="118642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.303" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.774" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124715" e_stop="124586" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.907">
            <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124498" e_stop="124415" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.946">
            <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124351" e_stop="124219" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123666" e_stop="123555" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.303" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122624" e_stop="122525" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121791" e_stop="121664" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="120931" e_stop="120862" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.774" acc_prob="0.913">
            <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119873" e_stop="119785" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.966" acc_prob="0.990">
            <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="119571" e_stop="119526" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.973">
            <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="119230" e_stop="119157" e_length="74"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="119025" e_stop="118955" e_length="71"/>
          </exon>
          <intron i_serial="11" don_prob="0.935" acc_prob="0.817">
            <gDNA_intron_boundary i_start="118954" i_stop="118882" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="0.996">
            <gDNA_exon_boundary e_start="118881" e_stop="118642" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124715" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124219"/>
              <exon start="123666" stop="123555"/>
              <exon start="122624" stop="122525"/>
              <exon start="121791" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119157"/>
              <exon start="119025" stop="118955"/>
              <exon start="118881" stop="118642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG : GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG : GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG : GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG : CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG : GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA : GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT : GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG : GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG : AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG : CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATG : GACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTCTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</gDNA_template>
            <first_frame> S  V  L  E  L  Q  L  K  S  C  K  I  S  T  T  L  L  R  S  A  K  K  L  S  K  L  R  F  N  A  R  R  I  K  W  N  R  L  W  P  Q  I  S   : G  T  M  Y  R  R  C  E  S  *  Y  G  S  H  Q  F  P  N  R  N  S  Q  P  K  R  R  K  *   : G  T  F  D  P  D  F  F  R  W  H  *  I  A  M  R  R  S  F  F  S  S  *  *  D  L  G  P  C  V  V  P  L  R  S  T  D  F  L  Y  C  F  F  F  R :   *  N  I  W  G  S  N  M  A  D  P  *  V  V  W  P  I  E  F  S  T  T  R  E  D  C  I  S  *  C  S  *  F  E  D  K  V  :  H  T  L  V  A  N  R  K  A  *  Q  V  G  *  H  *  *  T  E  S  F  P  L  E  L  *  Y  F  K  E  E  C  T   : G  T  I  T  R  I  S  R  C  A  T  F  V  N  W  G  R  L  G  S  P  *  L  *  C  S  G  T  D  K  *  I  I  S  P  T  L  G  S  T  D  N  E  :  E  N  K  F  N  R  S  S  P  C  P  *  F  G  L  Q  C  E  E  R  V  Y  S   : C  N  G  *  R  *  I  W  D  T  Y  M  G  S  *  N  A  E  V  S  S  P  *  S  P  W  T  Y  S  L  :  D  M  D  C  Q  V  Q  S  R  T  *  R  L  N  S   : E  C  W  N  *  F  C  G  Q  S  V  A  G  F  S  S  *  *  *  R  T  N  S  R  E  :  L  *  L  P  *  *  A  S  G  S  I  A  *  F  I  *  *  L  R  R  Q  C  V  W :   T  C  L  E  L  S  R  A  M  D  I  C  I  I  V  I  *  W  K  G  K  A  S  Y  G  L  F  I  R  R  T  K  K  K  I  H  M  S  L  D  N  N  Q  Q  I  L  Q  S  *  T  I  L  A  L  V  C  I  N  N  R  K  C  C  C  E  C  Y  F  I  F  W  T  I  V  R  E  K  F  K   </first_frame>
            <second_frame>  V  Y  *  S  C  S  *  K  V  A  K  Y  Q  Q  H  F  *  D  L  Q  K  S  S  L  S  C  D  S  M  Q  G  G  S  N  G  I  G  Y  G  L  K  Y  Q  :  A  R  C  I  A  D  V  K  A  D  T  D  H  T  S  F  L  T  G  T  L  S  L  K  E  E  N  E  :  V  H  L  I  R  I  S  S  A  G  T  E  L  L  C  E  G  L  F  S  H  P  N  E  I  W  D  L  A  S  C  P  F  D  Q  R  I  F  S  T  V  F  S  S   : G  E  T  Y  G  A  A  I  W  Q  I  P  E  L  Y  G  Q  S  N  S  P  Q  L  E  R  I  A  S  L  D  A  H  N  S  K  I  K  C :   T  L  W  W  P  T  G  R  H  D  K  L  V  S  I  D  E  Q  N  L  F  L  W  S  F  D  T  S  K  K  N  A  Q  :  V  Q  S  Q  E  S  A  G  V  L  H  S  L  T  G  G  A  W  D  P  H  D  Y  N  A  L  A  L  T  S  E  S  S  V  Q  L  W  D  L  R  T  M  K :   K  T  N  S  I  D  H  P  H  V  R  N  L  D  Y  N  V  K  R  E  Y  T  L  :  V  T  A  E  D  E  S  G  I  H  I  W  D  L  R  M  L  K  F  P  V  L  D  L  P  G  H  T  H  W :   T  W  T  V  K  C  N  P  E  H  E  D  L  I  L  :  S  A  G  T  D  S  A  V  N  L  W  L  A  S  L  P  S  S  D  E  P  T  P  E  S :   F  D  S  P  N  K  P  V  D  P  L  L  N  S  Y  S  D  Y  E  D  S  V  Y   : G  L  A  W  S  C  R  E  P  W  I  F  A  S  L  S  Y  D  G  R  V  R  P  L  M  G  Y  S  S  E  E  P  R  K  K  Y  T  C  L  W  I  I  T  S  R  F  C  N  L  E  L  F  L  L  W  F  V  *  T  I  G  S  V  A  A  N  A  I  L  F  F  G  Q  L  *  E  K  N  L  N  </second_frame>
            <third_frame>   C  I  R  A  A  V  E  K  L  Q  N  I  N  N  T  F  K  I  C  K  K  A  L  *  A  A  I  Q  C  K  E  D  Q  M  E  S  V  M  A  S  N  I  R :   H  D  V  S  P  M  *  K  L  I  R  I  T  P  V  S  *  P  E  L  S  A  *  K  K  K  M  R :   Y  I  *  S  G  F  L  P  L  A  L  N  C  Y  A  K  V  F  F  L  I  L  M  R  S  G  T  L  R  R  A  P  S  I  N  G  F  S  L  L  F  F  L  P  :  V  K  H  M  G  Q  Q  Y  G  R  S  L  S  C  M  A  N  R  I  L  H  N  *  R  G  L  H  L  L  M  L  I  I  R  R  *  S   : A  H  F  G  G  Q  Q  E  G  M  T  S  W  L  A  L  M  N  R  I  F  S  S  G  A  L  I  L  Q  R  R  M  H  R :   Y  N  H  K  N  Q  Q  V  C  Y  I  R  *  L  G  A  P  G  I  P  M  I  I  M  L  W  H  *  Q  V  N  H  Q  S  N  F  G  I  Y  G  Q  *   : R  K  Q  I  Q  S  I  I  P  M  S  V  I  W  I  T  M  *  R  E  S  I  L  L :   *  R  L  K  M  N  L  G  Y  I  Y  G  I  L  E  C  *  S  F  Q  S  L  I  S  L  D  I  L  T   : G  H  G  L  S  S  A  I  P  N  M  K  T  *  F  * :   V  L  E  L  I  L  R  S  I  C  G  W  L  L  F  L  V  V  T  N  Q  L  Q  R   : A  L  T  P  L  I  S  Q  W  I  H  C  L  I  H  I  V  T  T  K  T  V  C  M  :  D  L  L  G  A  V  E  S  H  G  Y  L  H  H  C  H  M  M  E  G  *  G  L  L  W  V  I  H  Q  K  N  Q  E  K  N  T  H  V  S  G  *  *  P  A  D  F  A  I  L  N  Y  S  C  F  G  L  Y  K  Q  *  E  V  L  L  R  M  L  F  Y  F  L  D  N  C  E  R  K  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124663" stop="124586"/>
                    <exon start="124498" stop="124415"/>
                    <exon start="124351" stop="124219"/>
                    <exon start="123666" stop="123555"/>
                    <exon start="122624" stop="122525"/>
                    <exon start="121791" stop="121664"/>
                    <exon start="120931" stop="120862"/>
                    <exon start="119873" stop="119785"/>
                    <exon start="119571" stop="119526"/>
                    <exon start="119230" stop="119157"/>
                    <exon start="119025" stop="118955"/>
                    <exon start="118881" stop="118709"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQKSSLSCDSMQGGSNGIGYGLKYQARCIADVKADTDHTSFLTGTLSLKEENEVHLIRISSAGTELLCEGLFSHPNEIWDLASCPFDQRIFSTVFSSGETYGAAIWQIPELYGQSNSPQLERIASLDAHNSKIKCTLWWPTGRHDKLVSIDEQNLFLWSFDTSKKNAQVQSQESAGVLHSLTGGAWDPHDYNALALTSESSVQLWDLRTMKKTNSIDHPHVRNLDYNVKREYTLVTAEDESGIHIWDLRMLKFPVLDLPGHTHWTWTVKCNPEHEDLILSAGTDSAVNLWLASLPSSDEPTPESFDSPNKPVDPLLNSYSDYEDSVYGLAWSCREPWIFASLSYDGRVRPLMGYSSEEPRKKYTCLWIITSRFCNLELFLLWFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120836" e_stop="120304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120836" e_stop="120304" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120836" stop="120304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</gDNA_template>
            <first_frame> L  S  C  I  D  D  *  S  L  D  L  S  S  I  C  K  *  N  N  L  F  E  *  V  Y  E  S  V  R  Y  I  C  F  L  P  V  C  M  R  V  N  I  T  M  L  G  V  *  H  S  N  V  D  P  S  *  E  P  F  *  Y  F  V  L  A  F  Q  F  Q  Y  G  M  W  R  G  T  R  L  L  Q  E  G  K  D  N  S  F  F  S  L  K  H  N  V  F  N  F  L  L  F  V  S  S  *  Q  S  L  Y  G  D  R  L  H  D  M  N  V  M  T  W  K  V  L  P  L  K  C  M  A  V  A  L  S  F  *  W  L  Y  F  S  I  R  L  L  V  F  A  Q  R  F  V  V  Y  F  *  K  S  S  H  T  C  V  F  N  M  S  I  Y  L  N  R  S  M  L  P  L  T   </first_frame>
            <second_frame>  *  V  A  L  M  I  D  P  L  I  C  R  P  F  A  N  E  I  I  C  L  S  K  F  M  N  L  *  G  I  S  A  F  C  L  Y  A  C  V  L  T  L  Q  C  *  E  F  D  T  Q  M  W  T  H  L  R  N  L  F  D  I  L  Y  *  H  F  N  F  N  M  E  C  G  E  V  L  V  C  Y  K  K  E  R  I  I  L  F  F  L  *  S  I  M  S  S  T  F  Y  F  L  F  P  P  S  N  H  F  M  E  I  D  Y  M  T  *  M  S  *  H  G  K  Y  F  L  *  S  V  W  L  W  P  *  V  F  S  G  S  I  S  L  S  G  F  W  F  L  L  N  D  L  L  F  I  S  E  K  V  P  I  L  V  F  L  I  C  P  S  T  *  I  E  V  C  Y  P  *  H  </second_frame>
            <third_frame>   K  L  H  *  *  L  I  P  *  F  V  V  H  L  Q  M  K  *  S  V  *  V  S  L  *  I  C  E  V  Y  L  L  F  A  C  M  H  A  C  *  H  Y  N  V  R  S  L  T  L  K  C  G  P  I  L  G  T  F  L  I  F  C  T  S  I  S  I  S  I  W  N  V  E  R  Y  S  F  A  T  R  R  K  G  *  F  F  F  F  F  K  A  *  C  L  Q  L  S  T  F  C  F  L  L  A  I  T  L  W  R  *  I  T  *  H  E  C  H  D  M  E  S  T  S  S  K  V  Y  G  C  G  L  E  F  L  V  A  L  F  L  Y  Q  A  S  G  F  C  S  T  I  C  C  L  F  L  K  K  F  P  Y  L  C  F  *  Y  V  H  L  P  K  *  K  Y  V  T  L  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="125710" PGL_stop="129570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125710" e_stop="125986"/>
            <exon e_start="126126" e_stop="126215"/>
            <exon e_start="126457" e_stop="126537"/>
            <exon e_start="126662" e_stop="126793"/>
            <exon e_start="127926" e_stop="128144"/>
            <exon e_start="128456" e_stop="128548"/>
            <exon e_start="129068" e_stop="129570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125710" e_stop="125986" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.737">
            <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126126" e_stop="126215" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.980">
            <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126457" e_stop="126537" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.931">
            <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126662" e_stop="126793" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127926" e_stop="128144" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="128456" e_stop="128548" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129068" e_stop="129570" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125710" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="128144"/>
              <exon start="128456" stop="128548"/>
              <exon start="129068" stop="129570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG : CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG : GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG : GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG : GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG : GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG : ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</gDNA_template>
            <first_frame> D  N  R  V  L  A  R  K  R  N  K  I  H  V  K  Q  S  K  R  N  T  I  D  N  V  L  A  D  V  E  T  N  V  S  V  T  G  I  W  F  F  V  F  V  V  C  R  K  S  T  A  L  F  S  D  *  L  P  E  E  N  I  S  Q  T  K  I  H  S  E  S  S  I  P  R  F  T  A  K  *  Q  R  K  R  Y  Q  T  S  K  W  L  Y   : A  Q  K  Q  K  G  N  S  T  G  V  C  A  K  C  T  T  G  I  H  G  V  V  C  E  K  S  T  T  T   : G  S  *  G  N  A  P  N  S  D  K  H  D  W  N  I  T  S  T  I  F  R  H  Y  C  N  H   : G  R  *  K  S  C  S  A  Y  V  *  C  L  D  D  W  I  Y  V  *  E  C  S  I  S  V  R  T  A  T  K  S  G  T  G  C  P  S  *  S  T  G  R  K   : G  F  T  R  L  C  I  W  Y  P  E  K  G  D  W  R  S  H  K  V  E  *  C  Y  R  S  *  K  N  R  R  V  E  V  Y  R  V  T  *  S  R  S  G  G  I  E  S  S  N  G  K  E  I  W  *  W  L  *  *  A  V  G  I  S  K  D  S  *  A  S  K  Y  Q   : G  A  N  Q  Y  S  W  R  R  C  C  A  R  H  E  F  F  H  *  A  S  L  S  C  F  R  S  *  S  N  E   : D  *  C  N  R  D  K  C  P  R  T  C  Q  T  S  L  L  A  H  G  G  W  L  *  H  P  E  Y  *  S  P  L  *  Y  G  T  G  T  R  H  F  S  K  A  R  *  A  A  S  W  *  K  Y  L  G  I  S  G  K  C  L  I  Y  S  K  H  *  N  V  E  A  T  Y  I  F  H  E  L  Y  D  G  Q  *  *  N  F  I  K  L  V  R  L  S  G  R  T  T  V  E  I  G  F  S  A  F  S  S  L  T  P  S  P  A  P  P  I  I  L  S  L  G  A  S  L  R  R  S  Y  K  G  N  V  L  *  I  D  A  Q  C  N  L  C  E  L  I  *  F  I  A  L  *  N  V  P  L  C  L  W  E  *  E  I  L  W  L  R  S  P </first_frame>
            <second_frame>  I  I  G  F  *  R  G  R  E  T  K  F  T  *  N  N  P  K  E  T  Q  L  I  M  S  S  L  T  L  K  P  T  F  L  L  Q  A  Y  G  S  S  S  S  S  S  A  G  S  R  R  L  C  S  L  I  S  F  Q  K  K  T  F  R  K  Q  K  F  T  L  R  A  Q  S  L  D  S  P  Q  N  N  N  E  N  D  T  K  P  P  N  G  S  M  :  H  K  S  R  R  E  I  L  L  E  Y  V  Q  N  V  Q  P  E  F  M  E  L  F  V  K  K  A  P  Q  Q  :  V  V  E  A  M  R  Q  T  V  T  N  M  I  G  T  L  P  P  Q  F  F  A  I  T  V  T  T  :  V  A  E  N  L  A  Q  L  M  Y  S  V  L  M  T  G  Y  M  F  R  N  A  Q  F  R  L  E  L  Q  Q  S  L  E  Q  A  A  L  P  E  A  Q  E  E  K  :  D  S  P  D  Y  A  S  G  T  Q  K  K  V  T  G  E  V  I  R  W  N  N  V  T  G  P  E  K  I  D  A  L  K  Y  I  E  L  L  E  A  E  V  E  E  L  N  R  Q  M  E  R  K  S  G  N  G  Y  N  E  L  L  E  Y  L  K  T  L  E  P  Q  N  I  K  :  E  L  T  S  T  A  G  E  D  V  V  L  A  M  N  S  F  I  K  R  L  L  A  V  S  D  P  S  Q  M  K  :  T  S  V  T  E  T  S  A  P  E  L  A  K  L  L  Y  W  L  M  V  V  G  Y  S  I  R  N  I  E  V  R  F  D  M  E  R  V  L  G  T  S  P  K  L  A  E  L  P  P  G  E  N  I  *  A  S  L  E  S  V  *  S  I  A  S  I  K  T  L  K  Q  H  T  F  F  M  S  F  T  M  V  N  S  K  I  L  S  S  L  Y  D  Y  L  G  G  Q  Q  W  K  L  V  L  V  H  F  L  H  S  L  P  A  P  L  P  L  L  F  S  V  W  E  H  H  *  D  A  H  T  K  E  M  Y  Y  K  L  M  H  N  V  T  Y  V  S  *  F  D  S  L  P  S  K  M  Y  L  S  V  Y  G  N  E  K  F  C  G  L  D  L   </second_frame>
            <third_frame>   *  *  G  F  S  E  E  E  K  Q  N  S  R  K  T  I  Q  K  K  H  N  *  *  C  P  R  *  R  *  N  Q  R  F  C  Y  R  H  M  V  L  R  L  R  R  L  P  E  V  D  G  F  V  L  *  L  A  S  R  R  K  H  F  A  N  K  N  S  L  *  E  L  N  P  S  I  H  R  K  I  T  T  K  T  I  P  N  L  Q  M  A  L  C :   T  K  A  E  G  K  F  Y  W  S  M  C  K  M  Y  N  R  N  S  W  S  C  L  *  K  K  H  H  N  R :   *  L  R  Q  C  A  K  Q  *  Q  T  *  L  E  H  Y  L  H  N  F  S  P  L  L  *  P  R :   S  L  K  I  L  L  S  L  C  I  V  S  *  *  L  D  I  C  L  G  M  L  N  F  G  *  N  C  N  K  V  W  N  R  L  P  F  L  K  H  R  K  K  R :   I  H  Q  I  M  H  L  V  P  R  K  R  *  L  E  K  S  *  G  G  I  M  L  Q  V  L  K  K  *  T  R  *  S  I  S  S  Y  L  K  Q  K  W  R  N  *  I  V  K  W  K  G  N  L  V  M  V  I  M  S  C  W  N  I  *  R  L  L  S  L  K  I  S  R :   S  *  P  V  Q  L  E  K  M  L  C  S  P  *  I  L  S  L  S  V  S  *  L  F  Q  I  L  V  K  *  R :   L  V  *  Q  R  Q  V  P  Q  N  L  P  N  F  F  I  G  S  W  W  L  V  I  A  S  G  I  L  K  S  A  L  I  W  N  G  Y  *  A  L  L  Q  S  S  L  S  C  L  L  V  K  I  F  R  H  L  W  K  V  S  N  L  *  Q  A  L  K  R  *  S  N  I  H  F  S  *  A  L  R  W  S  I  V  K  F  Y  Q  A  C  T  T  I  W  E  D  N  S  G  N  W  F  *  C  I  F  F  T  H  S  Q  P  R  S  P  Y  Y  S  Q  F  G  S  I  I  K  T  L  I  Q  R  K  C  T  I  N  *  C  T  M  *  L  M  *  V  N  L  I  H  C  P  L  K  C  T  S  L  F  M  G  M  R  N  F  V  A  *  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125753" stop="125986"/>
                    <exon start="126126" stop="126215"/>
                    <exon start="126457" stop="126537"/>
                    <exon start="126662" stop="126793"/>
                    <exon start="127926" stop="128144"/>
                    <exon start="128456" stop="128548"/>
                    <exon start="129068" stop="129229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNPKETQLIMSSLTLKPTFLLQAYGSSSSSSAGSRRLCSLISFQKKTFRKQKFTLRAQSLDSPQNNNENDTKPPNGSMHKSRREILLEYVQNVQPEFMELFVKKAPQQVVEAMRQTVTNMIGTLPPQFFAITVTTVAENLAQLMYSVLMTGYMFRNAQFRLELQQSLEQAALPEAQEEKDSPDYASGTQKKVTGEVIRWNNVTGPEKIDALKYIELLEAEVEELNRQMERKSGNGYNELLEYLKTLEPQNIKELTSTAGEDVVLAMNSFIKRLLAVSDPSQMKTSVTETSAPELAKLLYWLMVVGYSIRNIEVRFDMERVLGTSPKLAELPPGENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="129902" PGL_stop="130061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129902" e_stop="130061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="129902" e_stop="130061" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129902" stop="130061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTGGCATAAAAAGACTAGTCAATTTTTGGCAAGAGGTAATTATTGGCTGTTGAACAATAATGTACACTACCTGTTGGTACAACAAAATGAATGGATCAGTCAGATCCTACTAACACTAGATTATTTTGCAATCAGAATTTTCTCAACATTTTTTCT</gDNA_template>
            <first_frame> H  F  G  I  K  R  L  V  N  F  W  Q  E  V  I  I  G  C  *  T  I  M  Y  T  T  C  W  Y  N  K  M  N  G  S  V  R  S  Y  *  H  *  I  I  L  Q  S  E  F  S  Q  H  F  F  </first_frame>
            <second_frame>  I  L  A  *  K  D  *  S  I  F  G  K  R  *  L  L  A  V  E  Q  *  C  T  L  P  V  G  T  T  K  *  M  D  Q  S  D  P  T  N  T  R  L  F  C  N  Q  N  F  L  N  I  F  S </second_frame>
            <third_frame>   F  W  H  K  K  T  S  Q  F  L  A  R  G  N  Y  W  L  L  N  N  N  V  H  Y  L  L  V  Q  Q  N  E  W  I  S  Q  I  L  L  T  L  D  Y  F  A  I  R  I  F  S  T  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 250776 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 7599 bytes was the average size of a spliced alignment
$ 31704 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1585 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:54:20
-->
