<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:34:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="7112" stop="6212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6812" g_stop="6512" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6812" e_stop="6512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCCCCGTGCTTGATACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="7537" stop="6453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7237" g_stop="6753" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7237" e_stop="6753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTA-AAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="28686" stop="27722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28399" g_stop="28046" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28399" e_stop="28046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTAT-CAAATGGTATGAAAGGACATTGGACTTGTTAATGTTGTCGACCAAATAATTTGACAAGTTTATAAATCCTCCATCAAAATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTATCATGAAAATATGATGAATTTTAAAATCATGACAATGTACTTATAATGCAAATTTATGAAGTACATATAAATGATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCAAGATGTGATAAAATCATTTATGGGTTGAATATATGTCACAACTCACCTCTATGGGAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCA-TTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="29606" stop="28621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29311" g_stop="28921" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="421" r_length="390" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29311" e_stop="28921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>GTT-CTTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249673" ref_strand="+" ref_description="SGN-E249673 [cLEF-56-L5]">
      <seq>ttttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="31990" stop="31113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31690" g_stop="31413" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E249673" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31690" e_stop="31413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548295" ref_strand="+" ref_description="SGN-E548295 [TUS-59-O5](-)">
      <seq>ggaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccacgatatggtcaagaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="+" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="46661" stop="47719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46972" g_stop="47422" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="468" r_length="453" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="+" ref_id="SGN-E548295" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46972" e_stop="47422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCA-GATATGGTCAA-AACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCACGATATGGTCAAGAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287967" ref_strand="+" ref_description="SGN-E287967 [cLES-7-C8]">
      <seq>gaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccagatatggtcaaaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="+" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="46661" stop="47719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46972" g_stop="47422" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="465" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="+" ref_id="SGN-E287967" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46972" e_stop="47422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539893" ref_strand="+" ref_description="SGN-E539893 [TUS-59-O5]">
      <seq>ggaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccagatatggtcaaaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="+" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="46661" stop="47719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46972" g_stop="47422" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="466" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="+" ref_id="SGN-E539893" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46972" e_stop="47422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="65678" stop="64271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65378" g_stop="64571" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65378" e_stop="64571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGAGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTTGGAGCTAATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAAGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGTTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAAAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTATGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTGTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAAGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="66337" stop="65089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66037" g_stop="65389" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66037" e_stop="65389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGAAAGAACCAGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTTTGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATTTAGGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGATTGTTGCCAGAGGTTTCAACAAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGTGATAGTTACACTTCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAAGTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0033N19-ACA18/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0033N19.1" temp_strand="-" temp_description="C04SLm0033N19.1  CU234210.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0033N19 sequenced_by:sanger upload_account_name:uk">
        <position start="66336" stop="65352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66036" g_stop="65652" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0033N19.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0033N19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66036" e_stop="65652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGAAAGAACCAGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTTTGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATTTAGGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7237" PGL_stop="6512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7237" e_stop="6512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="7237" e_stop="6512" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7237" stop="6753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6812" stop="6512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTAAAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCCCCGTGCTTGATACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  Q  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  P  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  *  M  T  S  L  R  L  W  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  A  N  G  C  K  N  *  T  Q  C  R  *  Q  Y  F  *  V  Q  G  S  F  S  C  *  R  L  *  S  G  V  *  P  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  *  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  V  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  V  S  P  P  C  L  I  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  K  P  D  P  F  W  V  L  P  V  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  L  C  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  R  *  R  V  *  G  F  G  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  Q  M  G  V  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  D  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  K  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  S  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  *  A  P  R  A  *  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  S  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  C  A  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  I  D  D  E  F  K  A  L  A  N  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  *  K  L  N  T  M  Q  M  T  V  F  L  G  T  R  L  V  *  L  L  K  A  I  I  R  S  M  T  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  C  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  D  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7235" stop="6858"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPSTPESPPPVPPPNTHPMLTCAKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAIDDEFKALANQKIWVLVPKPHGRHPVGCKWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6897" stop="6547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APWAAPSGLQMGVKIKHNADDSISRYKARLVAKGYNQEYDLDYSETFSPVIRQETIRLVLSLAVRNNWLINKLDVSNAFLHGMLDETIYMSQPPGYVDPRFPQHVCKLQKSLYGLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6806" stop="6519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKAIIRSMTLITPRHSVLLFGRKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLSTCRNHRAMLIPASLNMFANSRSLCMGSSKPPVLDTHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28399" PGL_stop="28046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28399" e_stop="28046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="28399" e_stop="28046" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28399" stop="28046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTCATTATCAAATGGTATGAAAGGACATTGGACTTGTTAATGTTGTCGACCAAATAATTTGACAAGTTTATAAATCCTCCATCAAAATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTATCATGAAAATATGATGAATTTTAAAATCATGACAATGTACTTATAATGCAAATTTATGAAGTACATATAAATGATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCAAGATGTGATAAAATCATTTATGGGTTGAATATATGTCACAACTCACCTCTATGGGAG</gDNA_template>
            <first_frame> S  F  H  Y  Q  M  V  *  K  D  I  G  L  V  N  V  V  D  Q  I  I  *  Q  V  Y  K  S  S  I  K  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  Y  H  E  N  M  M  N  F  K  I  M  T  M  Y  L  *  C  K  F  M  K  Y  I  *  M  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  D  K  I  I  Y  G  L  N  I  C  H  N  S  P  L  W  E </first_frame>
            <second_frame>  V  F  I  I  K  W  Y  E  R  T  L  D  L  L  M  L  S  T  K  *  F  D  K  F  I  N  P  P  S  K  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  I  M  K  I  *  *  I  L  K  S  *  Q  C  T  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  Q  D  V  I  K  S  F  M  G  *  I  Y  V  T  T  H  L  Y  G   </second_frame>
            <third_frame>   F  S  L  S  N  G  M  K  G  H  W  T  C  *  C  C  R  P  N  N  L  T  S  L  *  I  L  H  Q  N  T  R  R  *  S  D  G  T  L  D  L  S  K  *  C  *  G  V  S  *  K  Y  D  E  F  *  N  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  N  D  *  S  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  K  M  *  *  N  H  L  W  V  E  Y  M  S  Q  L  T  S  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0033N19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29311" PGL_stop="28921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29311" e_stop="28921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="29311" e_stop="28921" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29311" stop="28921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> L  D  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  I  *  L  M  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  T  Y  V  F  S  K  I  F  L  *  F  K  I  Q  *  Y  S  I  T  N  N  Y  Q  E  L  K  A  Y  T  T  I  G  *  V  *  H  V  I  *  N  F  *  N  G  R  R  Y  K  I  L  I  A  *  V  *  I  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  L  I  L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  L  F  N  S  C  F  G  *  S  R  Y  E  N  Q  G  I  I  C  I  K  S  R  M  Y  F  L  K  Y  F  Y  D  L  K  Y  S  S  I  Q  S  L  T  I  I  R  N  *  R  H  I  Q  L  L  V  E  Y  D  M  L  Y  K  T  S  E  M  E  E  G  I  K  F  *  *  H  E  S  E  Y  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   *  F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  Y  L  T  H  V  L  V  D  L  V  M  R  I  K  V  L  Y  A  *  N  H  V  C  I  F  *  N  I  F  M  I  *  N  T  V  V  F  N  H  *  Q  L  S  G  T  K  G  I  Y  N  Y  W  L  S  M  T  C  Y  I  K  L  L  K  W  K  K  V  *  N  F  N  S  M  S  L  N  I  I  L  I  V  L  K  D  S  K  G  K  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0033N19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="31690" PGL_stop="31413"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31690" e_stop="31413"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="31690" e_stop="31413" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31690" stop="31413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  F  I  *  E  P  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  W  C  L  P  Q  K  C  Q  E  G  V  L  D  N  W  H  F  F  S  L  L  L  F  V  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  D  L  V  N  F  S  C  S  T  F  *   </first_frame>
            <second_frame>  F  I  R  E  V  Q  Q  S  N  E  V  L  L  V  H  C  S  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  P  R  Q  R  I  G  V  C  H  K  N  A  K  K  E  C  *  T  I  G  I  F  S  A  Y  Y  Y  L  Y  Y  F  L  L  I  S  I  *  C  F  L  F  F  S  *  T  *  *  T  L  V  A  Q  L  S  E  </second_frame>
            <third_frame>   L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  R  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  A  F  F  Q  L  I  I  I  C  T  I  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  K  L  *  L  L  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0033N19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46972" PGL_stop="47422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46972" e_stop="47422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="46972" e_stop="47422" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46972" stop="47422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46972" stop="47422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46972" stop="47422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539893" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</gDNA_template>
            <first_frame> M  E  R  K  S  F  L  K  K  R  S  N  T  L  I  L  R  R  N  Q  S  L  G  K  *  S  K  E  M  C  *  S  C  T  T  S  S  L  L  P  R  P  V  N  T  S  G  L  Q  *  H  L  N  T  R  R  K  L  K  I  F  Q  S  L  F  R  S  W  I  I  S  S  M  *  *  K  I  W  R  V  I  Y  S  A  N  R  M  F  C  V  C  L  C  L  C  D  E  C  L  V  I  L  T  R  S  S  *  R  I  K  *  I  N  N  A  I  Y  S  L  F  C  E  C  N  S  R  Y  G  Q  N  I  Y  I  Y  I  Y  I  C  *  D  I  R  V  *  I  F  L  K  K  I  </first_frame>
            <second_frame>  W  K  G  K  V  S  *  R  R  D  Q  T  H  *  S  S  E  E  I  N  H  L  G  S  N  R  R  R  C  A  R  V  V  Q  L  L  H  Y  Y  H  V  Q  *  T  P  V  D  Y  S  N  I  *  I  R  E  E  N  *  K  Y  S  R  A  S  F  V  L  G  L  F  R  Q  C  D  E  R  Y  G  G  S  S  T  Q  Q  I  E  C  S  V  Y  V  C  A  Y  V  M  N  V  W  *  Y  *  R  G  P  A  N  V  *  N  K  L  I  M  L  Y  I  V  S  S  V  N  V  I  P  D  M  V  K  T  Y  I  Y  I  Y  I  Y  V  K  I  L  E  Y  E  Y  F  *  K  K  S </second_frame>
            <third_frame>   G  K  E  K  F  L  K  E  E  I  K  H  I  D  P  Q  K  K  S  I  T  W  E  V  I  E  G  D  V  L  E  L  Y  N  F  F  I  I  T  T  S  S  E  H  Q  W  T  T  V  T  F  E  Y  E  K  K  T  E  N  I  P  E  P  L  S  F  L  D  Y  F  V  N  V  M  K  D  M  E  G  H  L  L  S  K  *  N  V  L  C  M  F  V  L  M  *  *  M  F  G  N  I  D  E  V  Q  L  T  Y  K  I  N  *  *  C  Y  I  *  S  L  L  *  M  *  F  Q  I  W  S  K  H  I  Y  I  Y  I  Y  M  L  R  Y  *  S  M  N  I  F  E  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46974" stop="47228"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEKFLKEEIKHIDPQKKSITWEVIEGDVLELYNFFIITTSSEHQWTTVTFEYEKKTENIPEPLSFLDYFVNVMKDMEGHLLSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="65378" PGL_stop="64571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65378" e_stop="64571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="65378" e_stop="64571" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65378" stop="64571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGAGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTTGGAGCTAATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAAGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGTTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAAAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTATGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTGTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAAGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  R  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  N  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  S  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  K  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  Y  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  L  E  L  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  K  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  M  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  C  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  K  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  E  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  W  S  *  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  K  F  G  M  S  S  S  K  P  I  D  T  P  S  V  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  V  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  R  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65244" stop="64573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLAKFGMSSSKPIDTPSVANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGVIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGRSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66037" PGL_stop="65389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66037" e_stop="65389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="66037" e_stop="65389" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66037" stop="65389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66036" stop="65652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGAAAGAACCAGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTTTGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATTTAGGCCGTCTACTTACAAAGAAGCCATTTTGAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTTGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGATTGTTGCCAGAGGTTTCAACAAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGTGATAGTTACACTTCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAAGTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  R  E  R  F  E  R  T  R  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  F  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  E  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  D  C  C  Q  R  F  Q  Q  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  S  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  M  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  L  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  F  R  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  L  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  I  V  A  R  G  F  N  K  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  V  I  V  T  L  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  V  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   C  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  T  R  A  I  *  K  N  Q  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  G  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  W  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  *  *  L  H  F  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  K  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0033N19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66036" stop="65389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESLPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTFRPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPLGRKIITCKWVFKKKEGISPAEGVKYKARIVARGFNKREGVDYNEIFSPVVRHTSIRVLLVIVTLQNLELEQLDVKTAFLHGEVEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 124 chains have been computed
$ 
$ memory statistics:
$ 20904 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 1900 bytes was the average size of a spliced alignment
$ 12584 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1797 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 147 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:38:06
-->
