<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:23:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714349" ref_strand="+" ref_description="SGN-E714349 [FB11AG12]">
      <seq>cgatcatccaatggcaagcatgttgcaaaagatgctttgcgtccactggaaggcaaggataacctggtagctgcaaaagaggttcaaaggaaggcacctgatgaccgcgggaaccttccgtctgaaagaaaagggaacactgatcgaaaggaaaatgcctatgccggtggtgttgatcagatttctggaagagcagggattccagaggccaaacctgtcaagtgaggagaagatatgggagaagatgaacgcaatgagaacaattgtgggatacacagcagccacccaacctttgttggtcgatgaacttaaggcactgtacatctttactggagttgagcctccatctatgttcagtaacccgtccactttggaagaagtgaatgacaagcttcagtttcttatgtcgattgtgggaataaagtgaagtgttagtactttgtttggtctgtattttcttgttgtctccttttgtgttgtttgtcaaattttagcttgatactggatttgtgtatgcttatgctagaaattgcaagttttgttgtaananaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="15808" stop="12825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15509" g_stop="15288" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15287" i_stop="13457" i_length="1831">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.043" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13456" g_stop="13124" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="555" r_length="333" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="571"/>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E714349" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15509" e_stop="15288"/>
          <exon e_start="13456" e_stop="13124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAGGTCAGTTCTAAGTCTAGTTCTGCCACTTTAGGTTGCGTTCCAGAATTTTTTATGGGGATTCTCGGAGAGGGTTATCTTTTAATATTTCATAGTTTTCTTGGTTCTTTGAAGTTCCTCCGGAAAAAATTGGTCAATCTATTTGAAAGCATGTTTAGGTTAACCTGGCTGGACTCATTTAGTATGCTTATCAATATATTTCTTTGATTAGATATTGGGAATTATTCAGACTGTTGATTGCTTAATTTACCTCATGAAAGGAAAAATCTTTAGCAACAAGTGCTACTAATTATGAATTTACCAAAAGAAACTGTGTCAATTCTCCGCCAATGCTCAAGTAAAGTAGTTTCTTGTTCACCCGGTCTTGTTCTTTGTGTATCTCAAGCAAACACACTGGTTCTCTTAGAAGAGAGGGTGCAACTTCTACTTCATTTCTTCCATTGGTTTGGCTTCTCTTTTCCATTGTTATTTGTGCTCTTTCATTAGTCACATTACTCTTACATTCCTTGGTGGTGATGCACGGGATGCTCCACTACAACACGGTATGAGGCCATTTTGCTTCAGCATTGGTGGGCTCTTATACTCGGCACTCATCAAACCGTCCGCTGGCAGTCGCGTCAAAATATTCTTTTAGTTTTGGGATGCATGTAGATTGGATCTTAATAGGATGATAGTAAATGAAGATCCCGGGTTTTCAATTTTCTTTTTGGAACCTTTAAGATCATCCTTTTCTGGGTCTGGAAAGTGGAAGTAAGAGTGTAGAAGAATGTGATTGCATATGACAAATGCGGCCTTACTAGTTTACGAATGTCAGTTAGCTGTACAGAACTTGCAAAGATACTTGTGGTCCAGCAAATAGATTCGATGCGTCTTTATTTACCGAACTTCAATTTGTTTTCCTCATTTTTTAACTTCAGATTTAGTTTGTATTTTTTTTTTTAAAAAACTAAGATGTTCAGGATTGTTTCTATAAACTATATATGATATATGTATTAAGAGAAAGATGACCAGTTTTTTTGGCATTCCCAGGGGCAACATTATCCAAAGTGTTCGTCCATGTGGAGTATTAAAAGAAGAATATTACAAGACTAGTAAAACAATGCTTGTGTGCCAGGTTTATATTTGATGTACTGTGCCTTCTTGAATCAATAGATAGCTTTTTAGAGAGAGAAACTAATGGGCTTAGCGGGATGAGTGTTTCAAGAGCAACTAATCAAGTTCCGCACCTGTGGCTTGTATTTTTTGGTTTATCCTAACCAATTATGATGCGAAGCAGCATCAAAGAGAGACTTGGAAACGTGGGTTCGTGTATACGATTTTGATTATGATTAGTGTTATTCAATCAATCTCCAGCCTGCAGTCTCGAATTGGTCGGGCTGTCCATCCTCTTATGTGTTGTGCTCCACTTAGGTCCATGTGGTTTTCGTACCAACTGTGAGTTGCATTTACAAAGATTATATGGTATTCCAATTTTTACTGTAGTGTGATTATGACCTAGTGGCTTGCATGCATAACTGATAATTCAAATCGTAGAATCCCTCTGCTAGTGTTGCGTTTTTGAACATGTCTTGCTCCTACAATTTTTGATACTGGTTTGTGAGATATCAAAGGGTAGTCCCTCTTTCTCACTTGAAGAGATTGTCTGAGTGCTATAGTTTTATCGGCAATGGAGGCAAGATGCATGAGTACTTCTCTATCCATGTTCAATTTTTCATATCTGGTTTTCTTCAACTGACTGGTTGTCATGTTGATTTGTTTCATTCCCTGGCTAGAGTATTTGAAGCCATTTGGATTCATTTTTGCTTGCTTGATGATATTGCTAGGAGTCCTTCAGTGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTACTGGAGTTGAGCCTCCATCTATGTTCAGTAACCCGTCCACTTTGGAAGAAGTGAATGACAAGCTTCAGTTTCTTATGTCGATTGTGGGAATAAAGTGAAGTGTTAGTACTTTGTTTGGTCTGTATTTTCTTGTTGTCTCCTTTTGTGTTGTTTGTCAAATTTTAGCTTGATACTGGATTTGTGTATGCTTATGCTAGAAATTGCAAGTTTTGTTGTAAAATCACAG</genome_strand>
        <mrna_strand>CGATCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTACTGGAGTTGAGCCTCCATCTATGTTCAGTAACCCGTCCACTTTGGAAGAAGTGAATGACAAGCTTCAGTTTCTTATGTCGATTGTGGGAATAAAGTGAAGTGTTAGTACTTTGTTTGGTCTGTATTTTCTTGTTGTCTCCTTTTGTGTTGTTTGTCAAATTTTAGCTTGATACTGGATTTGTGTATGCTTATGCTAGAAATTGCAAGTTTTGTTGTAANANAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708896" ref_strand="+" ref_description="SGN-E708896 [FA42AC10]">
      <seq>cccttgtgagagagcttcaaggaacaaaaactggaggaggacctgaggttacttcggaagaaaacgtgataatagaagtaacaaggaaaccaaatgtcagcaaaagctcaaagaaacaccacaaaaagaagaaagcaagtgaaagtaaagatgttgcaatatcagagaaaggggaggggttgagcaacaagcagcaggaggacactgatgtgaaaatcatagggaaaaaggaagaggtaaaggatgaagttaaggtggagcatgacgagaagcatttacgggtgaaaagggagaccaaagaaggaagagacgaggtcaaccaaagtggtgtttccaagaaggccaagaaagttgctgagatggacagaacactgcccggaagcagagatgcaggaattagcaaggatggtgggcaagctgcgaactcgaccaaggatcctaaaggagcatccaatggcaagcatgttgcaaaagatgctttgcgtccactggaaggcaaggataacctggtagctgcaaaagaggttcaaaggaaggcacctgatgaccgcgggaaccttccgtctgaaagaaaagggaacactgatcgaaaggaaaatgcctatgccggtggtgttgatcagatttctggaagagcagggattccagaggccaaacctgtcaagtgaggagaagatatgggagaagatgaacgcaatgagaacaattgtgggatacacagcagccacccaacctttgttggtcgatgaacttaaggcactgtacatctttactggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="16250" stop="13041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15952" g_stop="15288" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15287" i_stop="13457" i_length="1831">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.043" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13456" g_stop="13341" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="781" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E708896" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15952" e_stop="15288"/>
          <exon e_start="13456" e_stop="13341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTGAGAGAGCTTCAAGGAACAAAAACTGGAGGAGGACCTGAGGTTACTTCGGAAGAAAACGTGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAGGTCAGTTCTAAGTCTAGTTCTGCCACTTTAGGTTGCGTTCCAGAATTTTTTATGGGGATTCTCGGAGAGGGTTATCTTTTAATATTTCATAGTTTTCTTGGTTCTTTGAAGTTCCTCCGGAAAAAATTGGTCAATCTATTTGAAAGCATGTTTAGGTTAACCTGGCTGGACTCATTTAGTATGCTTATCAATATATTTCTTTGATTAGATATTGGGAATTATTCAGACTGTTGATTGCTTAATTTACCTCATGAAAGGAAAAATCTTTAGCAACAAGTGCTACTAATTATGAATTTACCAAAAGAAACTGTGTCAATTCTCCGCCAATGCTCAAGTAAAGTAGTTTCTTGTTCACCCGGTCTTGTTCTTTGTGTATCTCAAGCAAACACACTGGTTCTCTTAGAAGAGAGGGTGCAACTTCTACTTCATTTCTTCCATTGGTTTGGCTTCTCTTTTCCATTGTTATTTGTGCTCTTTCATTAGTCACATTACTCTTACATTCCTTGGTGGTGATGCACGGGATGCTCCACTACAACACGGTATGAGGCCATTTTGCTTCAGCATTGGTGGGCTCTTATACTCGGCACTCATCAAACCGTCCGCTGGCAGTCGCGTCAAAATATTCTTTTAGTTTTGGGATGCATGTAGATTGGATCTTAATAGGATGATAGTAAATGAAGATCCCGGGTTTTCAATTTTCTTTTTGGAACCTTTAAGATCATCCTTTTCTGGGTCTGGAAAGTGGAAGTAAGAGTGTAGAAGAATGTGATTGCATATGACAAATGCGGCCTTACTAGTTTACGAATGTCAGTTAGCTGTACAGAACTTGCAAAGATACTTGTGGTCCAGCAAATAGATTCGATGCGTCTTTATTTACCGAACTTCAATTTGTTTTCCTCATTTTTTAACTTCAGATTTAGTTTGTATTTTTTTTTTTAAAAAACTAAGATGTTCAGGATTGTTTCTATAAACTATATATGATATATGTATTAAGAGAAAGATGACCAGTTTTTTTGGCATTCCCAGGGGCAACATTATCCAAAGTGTTCGTCCATGTGGAGTATTAAAAGAAGAATATTACAAGACTAGTAAAACAATGCTTGTGTGCCAGGTTTATATTTGATGTACTGTGCCTTCTTGAATCAATAGATAGCTTTTTAGAGAGAGAAACTAATGGGCTTAGCGGGATGAGTGTTTCAAGAGCAACTAATCAAGTTCCGCACCTGTGGCTTGTATTTTTTGGTTTATCCTAACCAATTATGATGCGAAGCAGCATCAAAGAGAGACTTGGAAACGTGGGTTCGTGTATACGATTTTGATTATGATTAGTGTTATTCAATCAATCTCCAGCCTGCAGTCTCGAATTGGTCGGGCTGTCCATCCTCTTATGTGTTGTGCTCCACTTAGGTCCATGTGGTTTTCGTACCAACTGTGAGTTGCATTTACAAAGATTATATGGTATTCCAATTTTTACTGTAGTGTGATTATGACCTAGTGGCTTGCATGCATAACTGATAATTCAAATCGTAGAATCCCTCTGCTAGTGTTGCGTTTTTGAACATGTCTTGCTCCTACAATTTTTGATACTGGTTTGTGAGATATCAAAGGGTAGTCCCTCTTTCTCACTTGAAGAGATTGTCTGAGTGCTATAGTTTTATCGGCAATGGAGGCAAGATGCATGAGTACTTCTCTATCCATGTTCAATTTTTCATATCTGGTTTTCTTCAACTGACTGGTTGTCATGTTGATTTGTTTCATTCCCTGGCTAGAGTATTTGAAGCCATTTGGATTCATTTTTGCTTGCTTGATGATATTGCTAGGAGTCCTTCAGTGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTACTGGAGTTG</genome_strand>
        <mrna_strand>CCCTTGTGAGAGAGCTTCAAGGAACAAAAACTGGAGGAGGACCTGAGGTTACTTCGGAAGAAAACGTGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTACTGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699057" ref_strand="+" ref_description="SGN-E699057 [FA08CA01]">
      <seq>tgttaatagaagtaacaaggaaaccaaatgtcagcaaaagctcaaagaaacaccacaaaaagaagaaagcaagtgaaagtaaagatgttgcaatatcagagaaaggggaggggttgagcaacaagcagcaggaggacactgatgtgaaaatcatagggaaaaaggaagaggtaaaggatgaagttaaggtggagcatgacgagaagcatttacgggtgaaaagggagaccaaagaaggaagagacgaggtcaaccaaagtggtgtttccaagaaggccaagaaagttgctgagatggacagaacactgcccggaagcagagatgcaggaattagcaaggatggtgggcaagctgcgaactcgaccaaggatcctaaaggagcatccaatggcaagcatgttgcaaaagatgctttgcgtccactggaaggcaaggataacctggtagctgcaaaagaggttcaaaggaaggcacctgatgaccgcgggaaccttccgtctgaaagaaaagggaacactgatcgaaaggaaaatgcctatgccggtggtgttgatcagatttctggaagagcagggattccagaggccaaacctgtcaagtgaggagaagatatgggagaagatgaacgcaatgagaacaattgtgggatacacagcagccacccaacctttgttggtcgatgaacttaangcactgtacatctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="16186" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15886" g_stop="15288" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15287" i_stop="13457" i_length="1831">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.043" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13456" g_stop="13349" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="707" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E699057" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15886" e_stop="15288"/>
          <exon e_start="13456" e_stop="13349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAGGTCAGTTCTAAGTCTAGTTCTGCCACTTTAGGTTGCGTTCCAGAATTTTTTATGGGGATTCTCGGAGAGGGTTATCTTTTAATATTTCATAGTTTTCTTGGTTCTTTGAAGTTCCTCCGGAAAAAATTGGTCAATCTATTTGAAAGCATGTTTAGGTTAACCTGGCTGGACTCATTTAGTATGCTTATCAATATATTTCTTTGATTAGATATTGGGAATTATTCAGACTGTTGATTGCTTAATTTACCTCATGAAAGGAAAAATCTTTAGCAACAAGTGCTACTAATTATGAATTTACCAAAAGAAACTGTGTCAATTCTCCGCCAATGCTCAAGTAAAGTAGTTTCTTGTTCACCCGGTCTTGTTCTTTGTGTATCTCAAGCAAACACACTGGTTCTCTTAGAAGAGAGGGTGCAACTTCTACTTCATTTCTTCCATTGGTTTGGCTTCTCTTTTCCATTGTTATTTGTGCTCTTTCATTAGTCACATTACTCTTACATTCCTTGGTGGTGATGCACGGGATGCTCCACTACAACACGGTATGAGGCCATTTTGCTTCAGCATTGGTGGGCTCTTATACTCGGCACTCATCAAACCGTCCGCTGGCAGTCGCGTCAAAATATTCTTTTAGTTTTGGGATGCATGTAGATTGGATCTTAATAGGATGATAGTAAATGAAGATCCCGGGTTTTCAATTTTCTTTTTGGAACCTTTAAGATCATCCTTTTCTGGGTCTGGAAAGTGGAAGTAAGAGTGTAGAAGAATGTGATTGCATATGACAAATGCGGCCTTACTAGTTTACGAATGTCAGTTAGCTGTACAGAACTTGCAAAGATACTTGTGGTCCAGCAAATAGATTCGATGCGTCTTTATTTACCGAACTTCAATTTGTTTTCCTCATTTTTTAACTTCAGATTTAGTTTGTATTTTTTTTTTTAAAAAACTAAGATGTTCAGGATTGTTTCTATAAACTATATATGATATATGTATTAAGAGAAAGATGACCAGTTTTTTTGGCATTCCCAGGGGCAACATTATCCAAAGTGTTCGTCCATGTGGAGTATTAAAAGAAGAATATTACAAGACTAGTAAAACAATGCTTGTGTGCCAGGTTTATATTTGATGTACTGTGCCTTCTTGAATCAATAGATAGCTTTTTAGAGAGAGAAACTAATGGGCTTAGCGGGATGAGTGTTTCAAGAGCAACTAATCAAGTTCCGCACCTGTGGCTTGTATTTTTTGGTTTATCCTAACCAATTATGATGCGAAGCAGCATCAAAGAGAGACTTGGAAACGTGGGTTCGTGTATACGATTTTGATTATGATTAGTGTTATTCAATCAATCTCCAGCCTGCAGTCTCGAATTGGTCGGGCTGTCCATCCTCTTATGTGTTGTGCTCCACTTAGGTCCATGTGGTTTTCGTACCAACTGTGAGTTGCATTTACAAAGATTATATGGTATTCCAATTTTTACTGTAGTGTGATTATGACCTAGTGGCTTGCATGCATAACTGATAATTCAAATCGTAGAATCCCTCTGCTAGTGTTGCGTTTTTGAACATGTCTTGCTCCTACAATTTTTGATACTGGTTTGTGAGATATCAAAGGGTAGTCCCTCTTTCTCACTTGAAGAGATTGTCTGAGTGCTATAGTTTTATCGGCAATGGAGGCAAGATGCATGAGTACTTCTCTATCCATGTTCAATTTTTCATATCTGGTTTTCTTCAACTGACTGGTTGTCATGTTGATTTGTTTCATTCCCTGGCTAGAGTATTTGAAGCCATTTGGATTCATTTTTGCTTGCTTGATGATATTGCTAGGAGTCCTTCAGTGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTAC</genome_strand>
        <mrna_strand>TGTTAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAANGCACTGTACATCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699159" ref_strand="+" ref_description="SGN-E699159 [FA08DF09]">
      <seq>gaaaccaaatgatagcaaaagctctcagaaacaccacaaaaagaacaaagccagtgaaagtaaagatgttgcaatatcatacaaaggggaggggttgagcaacatgcagcaggaggacactgatgtgaaaatcatagggaaaaaggaacaggtatcggatgaagttaaggtggagcatgacgagaagcatttacgggtgaaaagggagaccaaagaaggaagagacgaggtcaaccaaagtggtgtttccaagaaggccaagaaagttgctgagatggacagaacactgcccggaagcatagatgccggaattagcaaggatggtgggcaagctgcgaactcgaccaaggatcctaaaggagcatccaatggcaagcatgttgcaaaagatgctttgcgtcctctggaaggcaaggataacctggtagctgcaaaagaggttcaaaggaacgcacctgatgaccgcgggaaccttccgtctgaaagaaaagggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="16167" stop="15072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15867" g_stop="15372" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E699159" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15867" e_stop="15372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAAC</genome_strand>
        <mrna_strand>GAAACCAAATGATAGCAAAAGCTCTCAGAAACACCACAAAAAGAACAAAGCCAGTGAAAGTAAAGATGTTGCAATATCATACAAAGGGGAGGGGTTGAGCAACATGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAACAGGTATCGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCATAGATGCCGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCTCTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAACGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704897" ref_strand="+" ref_description="SGN-E704897 [FA25CC12]">
      <seq>cagactcctgttgaagatgaagatgttggcagagcggagaaagaaagagagataaatgtagatgagaatgttaaagaagaaggatacgaagaagatgtgggtgaatacttggaaggagagaatgagggaccattgaaggaggagaatttagaaaccgaacgagctagagaagcagaaaattgggaatttgatgaaaagattaaggtaactgagggtttggatctggtcgccaaagaagccaggggagaaaatgagggcgaaaaagaccttactttaacaccaggtctgccagataagaattttgttgaagtatatgtaggtgatggagtgaaggaagattcattagggagttcaggtgtacttgagggaaatgaggatagaaaggttacgcgtcctgaaatcatagagaagccattggtaagcaaggatgagagggtagatagtcttgtgagagagcttcaaggaacaaaaactggaggaggacctgaggttacttcggaagaaaacgtgataatagaagtaacaaggaaaccaaatgtcagcaaaagctcaaagaaacaccacaaaaagaagaaagcaagtgaaagtaaagatgttgcaatatcagagaaaggggaggggctgagcaacaagcagcaggaggacactgatgtgaaaatcatagggaaaaaggaagaggntaaggatgaagttaaggtggagcatgacgagaagcattcacgggtgaaaagggagaccaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="16694" stop="15352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16394" g_stop="15652" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E704897" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16394" e_stop="15652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTCCTGTTGAAGATGAAGATGTTGGCAGAGCGGAGAAAGAAAGAGAGATAAATGTAGATGAGAATGTTAAAGAAGAAGGATACGAAGAAGATGTGGGTGAATACTTGGAAGGAGAGAATGAGGGACCATTGAAGGAGGAGAATTTAGAAACCGAACGAGCTAGAGAAGCAGAAAATTGGGAATTTGATGAAAAGATTAAGGTAACTGAGGGTTTGGATCTGGTCGCCAAAGAAGCCAGGGGAGAAAATGAGGGCGAAAAAGACCTTACTTTAACACCAGGTCTGCCAGATAAGAATTTTGTTGAAGTATATGTAGGTGATGGAGTGAAGGAAGATTCATTAGGGAGTTCAGGTGTACTTGAGGGAAATGAGGATAGAAAGGTTACGCGTCCTGAAATCATAGAGAAGCCATTGGTAAGCAAGGATGAGAGGGTAGATAGTCTTGTGAGAGAGCTTCAAGGAACAAAAACTGGAGGAGGACCTGAGGTTACTTCGGAAGAAAACGTGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGA</genome_strand>
        <mrna_strand>CAGACTCCTGTTGAAGATGAAGATGTTGGCAGAGCGGAGAAAGAAAGAGAGATAAATGTAGATGAGAATGTTAAAGAAGAAGGATACGAAGAAGATGTGGGTGAATACTTGGAAGGAGAGAATGAGGGACCATTGAAGGAGGAGAATTTAGAAACCGAACGAGCTAGAGAAGCAGAAAATTGGGAATTTGATGAAAAGATTAAGGTAACTGAGGGTTTGGATCTGGTCGCCAAAGAAGCCAGGGGAGAAAATGAGGGCGAAAAAGACCTTACTTTAACACCAGGTCTGCCAGATAAGAATTTTGTTGAAGTATATGTAGGTGATGGAGTGAAGGAAGATTCATTAGGGAGTTCAGGTGTACTTGAGGGAAATGAGGATAGAAAGGTTACGCGTCCTGAAATCATAGAGAAGCCATTGGTAAGCAAGGATGAGAGGGTAGATAGTCTTGTGAGAGAGCTTCAAGGAACAAAAACTGGAGGAGGACCTGAGGTTACTTCGGAAGAAAACGTGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGCTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGNTAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTCACGGGTGAAAAGGGAGACCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550684" ref_strand="+" ref_description="SGN-E550684 [TUS-50-B11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="23609" stop="24798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23909" g_stop="24498" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E550684" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23909" e_stop="24498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTAAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTAAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688349" ref_strand="+" ref_description="SGN-E688349 [t3_tus_50_b11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="23609" stop="24798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23909" g_stop="24498" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E688349" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23909" e_stop="24498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTAAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTAAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358519" ref_strand="+" ref_description="SGN-E358519 [cLHT-22-G5]">
      <seq>aaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggcttcgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagtagaggcttacttgaaggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="23822" stop="24850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24122" g_stop="24550" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E358519" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24122" e_stop="24550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTAAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTAAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCGGACTCATCTGATTCTTCTGGTAGTGGTATTTC</genome_strand>
        <mrna_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAAGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372630" ref_strand="+" ref_description="SGN-E372630 [TUS-31-A7](-)">
      <seq>tttgtgtccaagattggcttagacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatttatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatttcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="24566" stop="25765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24865" g_stop="24948" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24949" i_stop="25040" i_length="92">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25041" g_stop="25098" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="142" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25099" i_stop="25189" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25190" g_stop="25458" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="395" r_length="253" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E372630" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24865" e_stop="24948"/>
          <exon e_start="25041" e_stop="25098"/>
          <exon e_start="25190" e_stop="25458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTGTGTTGTATCTTGTATGACATGTTTCTTTTTATTGATTGTAGAGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATGTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTAGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTCGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTCAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAAAGACTTTATTGTTACTTGTTAGATTCTTATTATGTTGTATTTGTGAAGACATTAAGTTATTAACTACAAATCTACA</genome_strand>
        <mrna_strand>TTTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATTTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATTTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCAT-------G---A-AAG-TC---A-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAAGTTATTAACAACAAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372631" ref_strand="+" ref_description="SGN-E372631 [TUS-31-A7]">
      <seq>ttgtgtccaagattggcttagacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatctatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatctcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="24567" stop="25788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24866" g_stop="24948" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24949" i_stop="25040" i_length="92">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25041" g_stop="25098" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="141" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25099" i_stop="25189" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25190" g_stop="25458" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="394" r_length="253" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="444"/>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E372631" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24866" e_stop="24948"/>
          <exon e_start="25041" e_stop="25098"/>
          <exon e_start="25190" e_stop="25458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTGTGTTGTATCTTGTATGACATGTTTCTTTTTATTGATTGTAGAGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATGTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTAGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTCGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTCAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAAAGACTTTATTGTTACTTGTTAGATTCTTATTATGTTGTATTTGTGAAGACATTAAGTTATTAACTACAAATCTACA</genome_strand>
        <mrna_strand>TTGTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCAT-------G---A-AAG-TC---A-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAAGTTATTAACAACAAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289053" ref_strand="+" ref_description="SGN-E289053 [cLES-18-E17]">
      <seq>agattggcttacacaagaaaccaagcctatttgtgttgaagaaagtttggagtttcttgaaaaaattgaacttgagatggcaaatagtggaagaagctcttccattgttgatctatgattgacttgcaagcggtccaagggtcaagacaatgaagaaataattttgttggcacgtgacacttgaaagttgaaagcgatctcatggaagaaagtcaagaaactcattattgttgtttgttattgttgaaagtaatctcatgaaagtcaacattgtttgttgcttattattgtttattatgagttaatgagagactttattgttacttgttagattcttaatatgttgtatttgtgaagacattaagttattaacaacaaatctacaaagactacaatgcaacttttgttttagtgtcattgcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="24575" stop="25765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24875" g_stop="24948" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24949" i_stop="25040" i_length="92">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25041" g_stop="25098" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="132" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25099" i_stop="25189" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25190" g_stop="25458" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="385" r_length="253" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="435"/>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E289053" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24875" e_stop="24948"/>
          <exon e_start="25041" e_stop="25098"/>
          <exon e_start="25190" e_stop="25458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTGGTAAGACTTTTTATTTTTTATTTATTTATGGAAAAAATAAAATACTTATTGTGTTGTATCTTGTATGACATGTTTCTTTTTATTGATTGTAGAGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATGTATGATTGACTTGCAAGCGGTGAGTTTAATACATCATTTATTTAATCATATCATTTTTTAATCTTAAAAGTAGTATTCTAAGTTTCTAATATTTGATTTTATCTTAAAAGGTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTCGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTCAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAAAGACTTTATTGTTACTTGTTAGATTCTTATTATGTTGTATTTGTGAAGACATTAAGTTATTAACTACAAATCTACA</genome_strand>
        <mrna_strand>AGATTGGCTTACACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG............................................................................................AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATCTATGATTGACTTGCAAGCG...........................................................................................GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTTGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCAT-------G---A-AAG-TC---A-ACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAGAGACTTTATTGTTACTTGTTAGATTCTTAATATGTTGTATTTGTGAAGACATTAAGTTATTAACAACAAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708856" ref_strand="+" ref_description="SGN-E708856 [FA36DH02]">
      <seq>cgattatgcaatgtcccagcaactcctttcgctacaatgctacacaatgcgagtgcaaccctggttacttgtttaacttcacaagtagaatatgttacttgtttgatgaatggggtcctgtggaaagtgattctggggttgattatagatctttatcgtttcctggaagtggtgcccttttcgattttgattcaattaggaggttaactcaatcgcaagctgtctttcttgaagctactcttattatgttgctttcttggctttgtttctgtttttttgctcggtgtgctccgcttggtgatggccgttctatttggtttaagatccgatggtggattagtcgacttgatatctgctttgcatctcggcactggcttgatgaccagaaggtagtcatgaagcggaaaacagagcttggtggaactttttcaatagctagctggatactttttattggtctttttgctgctttgctataccatataatagcgaagcgagctattgagatgcacaatgtgagagcaacaaatgcacctgatttagctgcttttataaacgatttggagtttaatatcactacaatctcaagtatgagctgcctacacttacgtggtcttggaacagtcgtaactgggaatccagggttgattgactatcgatttgctcctctttcaacatttgccaactattcctgtataaacacaactaagggaccgaccattatgctcaagtgcagcagatgtccacttagccgggacaatgcctatatttcatggcaatttgttgatctcccaaatagtcctgcagcagctgctggatttcagttcaatctaacagcaacagatcctaaaaacaggaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="43020" stop="51577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43319" g_stop="43695" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43696" i_stop="50596" i_length="6901">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50597" g_stop="50688" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="469" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50689" i_stop="50882" i_length="194">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50883" g_stop="51277" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="864" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E708856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43319" e_stop="43695"/>
          <exon e_start="50597" e_stop="50688"/>
          <exon e_start="50883" e_stop="51277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGCAATGTCCCAGCAACTCCTTTCGCTACAATGCTACACAATGCGAGTGCAACCCTGGTTACTTGTTTAACTTCACAAGTAGAATATGTTACTTGTTTGATGAATGGGGTCCTGTGGAAAGTGATTCTGGGGTTGATTATAGATCTTTATCGTTTCCTGGAAGTGGTGCCCTTTTCGATTTTGATTCAATTAGGAGGTTAACTCAATCGCAAGCTGTCTTTCTTGAAGCTACTCTTATTATGTTGCTTTCTTGGCTTTGTTTCTGTTTTTTTGCTCGGTGTGCTCCGCTTGGTGATGGCCGTTCTATTTGGTTTAAGATCCGATGGTGGATTAGTCGACTTGATATCTGCTTTGCATCTCGGCACTGGCTTGTATGATTTCTATCTCTTTCTTTGTTACTTTTGTTTTTAGGATGGAATTTTATGGTTAATTTTACTTATTATTTCATGATTAGTAGATTTGTGAGGCATAATTTGTACTGAAAGTTAATTGGGGTTTTTAACATAGCTAGTTGGACATAGATTTGAAACTTAAGTTTTGATTTTGCTAACTGAATTTACTAAAAGTTGCGGAAAATTTATGGAATGTTTTGAATTTTGGGAAGCCATATGTGACAACCAGTTTTGGAAAAGAAGGAACATATACTTTGGGTTATTAGCAGGTTTTGAGCATGTACAGTTCTCTGGTATGGTTTATGTTGAGTGGATATGAAGATTCAAAAGAAGACCTACAAAAATAGGTTTATAGGAAGAACTCTCTTTGTTTTTTATAATTTATACCTTGCCTAACTCTAATTTGTCAACATCAATTTAAAGGCATAATACATGAAATGACCCGTAACTTGGTGTTAGCTAACAACTATGATCCTTAACTTTGGGTGTGCACAAGTAGACTTAAGTTTTTATAAAATTGAACAAATAGACATATTCGTCCTACGTGGCACCCACATGGCAATTTTGTGTCCTATGTGGCATCCTACATGTATTATGCCATGTAGGATACGTGTGTTTACTTGTTCAATTTTATACAAGTTTAAAGTGCCTACTTGTGCACACTCAAAGTTGGAGGGCATAGTTATCCGTTGAAGCCAAGTTAAGGAATCCCCAATTAAAACAAATAGGACCTTGATTTAGATTTAAGACCAAGCAAGAAGAAGGATATATTCTTGTTGAATGAACTCACCTTTCAGTTCTGGTGTCATAAATGCTATCTTCTTGTTGCTTCAATAATGAGTTTTAACTGTCATATATTATATTGTGCGTGATTGCTTTTTCAATGTGATCTCCAATTGGTGGTTCTCAGAAATTTGTGAAAGCAATCAAAGTCTGGAGGTGAATCAGTGATTTGAGGGACTATCAGGGATGATGTGGTTGGTTTGTTGAGTGTGACACAAAATGATTTTCTATAATAGTTACGTAGTTCTTAGTTGCAAGAATTATGTTGCATATTTTGCTTATGTTCCCTGGAACTGAAAGGAAAACTGGGAATATGATAAATGGAGAAAGTGCAAGATGGCACAAGCCAAAGTTATCCTTAGCACCCAGTAGCCTAAGTAAGATATTTTCACTTCCAAACACTAATGAGATCTTAAAAAGAAAGGGGAATTAAGTTCAGATTGCCTTCCTATCCATAATTAAAACTTGAAAAAAGAAAAAACAAAAAGAGACGGAAAATCATCATAAATCTCTTGCTATAGCTGCCTCTAAGGTATGACACAAACTTGAGTTAATAAAAAGGAGGTGGAGATCATAAAAAAGGGCAAGAATCAATATTTTAAAAAGCTTCTTAATGTTGGTTTTCTTCAATGAAGCCCTGCTTGCTTATCAAATAGAACTGTAAAAAAATAAAAGGGTTGATGCAGAAGTATAAGTATGATGAGTCTTTCTTCTATTTATTTTTAATTCAAATCATTTAGCATACCCATTTTTAGGCTTGTAATGATTGATTTCAAATGCTATTTGCTGCTTTCTCTAGGTGATGTATTGAAGTTATTCTGTATAGAATTTTCTTGAGGTGTTCTACTATTTTGATATTAATTATGGAATTGATGATCTTATAGTCAAGAGCTGAAATAGTACCACCAGTTAATATCCAGGAGTAGTAACCAGAGCTGTGGAAAATTTCCTTGAGCCATTTAGTTTGAGAATTACCTCTTCCATTCTCTCAAGACACTTGATTGAGTGCTTGAATATCAGTTGCGTTCTCCTGGGATGCTCATTTGTAGTATCACCTATCAAAGTAAAGAAAGGGAATTAACTGTGGAAAGGTCATGTTTATCTGCTATCCCGTTCTAGCTTTCCCTTGAGTTTTCTTTTTTGGAGAGAGCTTACAGCGATAATTCATTTTAATCTAAGGTTATTTCTTAGGAAAGATCTATGTTTCCAGTCTTGTTTTGCTATTGGTAAGGAGCTCATACTTCAATATGCTTTGACATATTAAACTAGGATCTATTATCTCATCCTGAAGCCATTAGATTTCAGTTCCAATCTTGTCACTAAGAAGTTCTGTGTTGTTTGCATTTTGCATCCTTAATGTATGCATCATCTTAAGTTTTGCACTGTATCCTTTGTTTTTCACAATTTGTCTCTTTATGTATACACCACTTTTTGTTTAACATTCTATCCTTTGTTATTTTCATTATTTACCCCCTAAGATGTGCATTGCTATTTTATTATTTGTACTGGGTACTGCAAAAATATATGTTTCATCTCCATATTATCTTTCTACAGCATTTATAATTCCTTTTTCATGTAAAACAGACGTCCAACAACTCTAATTTTCCCACTACTTTTCATATTCCACTCACTTACTTCATTAGTTGTCTCAATTACCGCCGTATTCTCACTTGAAAATGACATTTGGTTTTCCCAGTCATAGAGAAAGTTTTTACCTCTGTCAAAATTGATAAAGGTCCTTTTAATCAAAGGTACTTCATTTTGCCATTTAAGCAATCTCTAGATTGAGAATCCAATTTCTTAACATTTGATTAAGACACGTTTAGATGGAGAGTTATAGATAGTTAGGATCATATAACTGACCCAACCTAGATATTTAAGCAATCCTTTGAAGATGAAGTTTTTAGCACAATCCTCCACTAAGTATTGAAATGCATGTATTTGGATAATAAGGAGTTGGAGATGTTGTATGGAGAAAATAGATAAGTGTATATTGTTTCAGTGTCACAGAGCCCTTGATGTTTACTATTCCAACCTACACATTCATAAAATGAAATGTTTAATAAGTTTGTGAGGGATAGGGTGCAAATGGTATGATGCATATTTAGGGGCACATCTTAATAAACAAAGGAGCATATAAATTAAAAATGGTGCACAAAATAAGGAAAATTAAAAGAGGATGGGTGCAAAATGAAAAATGGTGCATGCATTAAGGGTGCAAAATGAGAAGAACTCAAAAGTGCCTCTAATAGGCGAATGAAAGTACATGGATAACTGGATCATAACTCCAGGACTGGAGGCCACTTTGCACCAGCACTGAATATGGATAACATTTTCCTGAACTAATTATGAGAAGTAGTTTATTAGGAATAGACTAAGTCGGGGTATTTCTTTTTGCCAGTTTTTAGAGTGATGGTGGTACACTTCTGGGCGATGGTAATGGTCAATTTAAGTCATTTTAGTTGCTTAAGCTATGCTTCAAAATGGTACTATGCGAACTGGCTGTATTTATTACTTCAAAGTTGGTACTTCAGTTTTGGTGAGCTGCAGTATGCAGTAGTAGTAGTGTGGATTATTAAACCTTCAATTCAGTTTCTGCAGGGTTAATACATGTCGGATTTGAGTCTTAGAGTAGTCAGTAGTGCAAGGCCTGATTCAGATCCCTTCCCTCATTTGTGTATATATAAGGACATCTCATTCTCTAGTCTCCTAAACGTTTCCTATCAAAATAGTCTTTTTATCTGACTAAATAAGAATAGTTTTCTATGCCAGTCTTTAGTGTCATTGATTCTCACAAAAGGAGTTCATACTTCAATTATATTGACAAATAACCAATGCATCATAAATTGAGTTAGTGTAGGGTCTTGAGTACAACTCGATCCTCTAACCTCCTCTCTTTTTTCTTTCATGGTTACCTTGTTTCTTCTTTTTCTAACCATTTAATTCCAGGTTTTCTAACACTAGCAGTCTGTTTAGTTGAATGAAGGGTTTTATCGACTTCTGGGTCAATTTCGTTCTTGCACAGCCATTTCTCTTTTGCATGATGTTTGCTGAAGTTGCAATTGTGACAGGGAACTTCTCTTCATTAACTTTTGTATCCCAGTAGGTACTAATATATTAACAAATTACCTTACCAAAAAACAAGTTCTCTTTTGCATGATGTTTGCATTCTGTAGTAGATTTGGAACTTCATCTGAATGATACTTAAAATTTAATAGCTCAAGTCGTATGTGAGAAAGACAAGTATCCAATGAATTGGTGCTGTAAGTCTAGGTATTGTCGACCTATGAACCACAATGTGTGTGCAGTACGGGTATAATTTGAAGATGATTTAAACAATAAGGGTATGCAATAGACACCATTGTTACCACCCCAAAAAAAGAATAAAGAAAATGGGAACTGGGATGCAATACGAACGGGATACAAAAAAATGTCTTCCAGTTTTCAGTAAGGATTTGTGATCTAAATTCTAAAGACTGTTGTAAGAAGCATGAATAAGTATTTAATGCAAAGATTAGAACAGACACATTCATAAAGAACCCAGGTTTGTGAAATTGAGCCTCCTCCTCCTCCACTTGCTGATGCTTCTCTCTCTTCTTGCTCAAGTGAGACGAAGAAGACTCCCTCCTCTTATTTTCCTCTTAATTTTGGAATGGTTCTTCGCAGAGAAACATTGTTAATGATATAGAAACCATAGACATATTAGAATCCTTATCATTTAGGAGTCATGTTCATTGTTGATAGAATAAAATTTTTATCTGAGGCGGTAGGAAGGTTTTCACTTTAACACAAAGTTTCTTCTTATGTGTCCCTATAGTACCCGTCGCCGACAAAGAAAAACTAACACTCGACTTTAACAAAATATAATATGCAGATTTTTTTTGATAACTGTGGTATTTGGGTCATCTTACGTGCACCTCGACTAATCCTATTGATATTTGCTACCTCTCACTAGTACATGTACCCGCCAACTCTATTCACCTGGGCTTGGATAGATAGGAAGAAATCATCCTGTGTTTCCCCCTCCCCCCCATTAGAATTTTAATTTGAGACCTCATGGTTCTAAACCTACTTCATTCAACTGGAACCTCACCCGTCTTCTTCCTTGGGAGAATGGATTGTGACAAGATCTGGAAGAGGTGTTGTTGGACTTTGCGTTCTTTTGGATCCCAATCAAGCACAGTTTCTCGATCTTGATGCCAAGTACACCCTGACCCTTTCTTAAGAGAACATTTCTTGCTGCAGAATCAGTATACACATTCACAGGTTGACCCGAAGAAATCATGTAACCATCTTTGAACTTCATGAAGTTGCACACGGAGTTCTCAATTTTCCACTGACAATCATGAATCAATCACCCCACTTTCCTTGGCTCCACTATCCATGATAAATCACAGAACACAATACATGCACTCAGACGGCAAGACCACATAGGAGCTCGTATTGCATACAGCTCTGTAGTGTTTTCTTCAGAATTAGATTTCTTTTGGACAACTGATGTCAGTTCCCTCCCTGATCCTCCTCCCCTTCTCACTTGTAATCCGAGTATGAGCGGCTCTGACGATGACCTCAGTCCTCATAGGAGTGATTCTAACCTCCACTCCAGAATATCCATCTTCTGCTAACTCACGTGTTAACACTTAATTTAGCTCCTCGAAAAACACACCATCTGCCACGAACGTCTTCTTTTTGCTCATTTGAGTAGCTCTGTTTGCTCTCTTTGGATGTTTGTAGTTATGTTGACTTTTGATTCTGTCATTACATTGTTAATGGTGTAGAGACCACCTAGGCTTAGTAGATTCCTTATGATTTTAGGAGTCATGTTCACTTTTTAAGCTCTCATTACATTGTTAGTGGTGTAGAGACCACCTAGACTTATTAGACTATTAATCATTTTAGGAGTCATGTTCACTTCTAAGCTTTTATTACCTACTTGGTAGGGACTGATGTAAAATTTACTTTACTGATTTCAGAAGGGAAAAAGAAGGGAAAAAAAAGAAGCAAAGATAAGAGTCTCTTGCATCCAATCCAACCCCTAAATTCTCTTTGTTTAAGTTTTTATATTTCTTTAGTTATTAGAATAACCACATGTGTTCTTTTAAAATCGCATTCTGACCCCAAAAGTATCAATATTTTCCCTGCATGTCTACACTTGTAGGATACTTGAATTCTAGATTTAGAGATATGATCATCCAGAAAAATAATAGGAAATTTCTGTGTACTTACTGAAGATCACATGTTCTTAGGGGTGGATTTACCTTATAACAAGCGGTGTCCCTCGAATTGTTTTTACTATTCCACATATAAATAATATAAAAACATATATAGGTAAATAAAATGACACCACTTGACAGTTAGACTGTCTCAGTTCTGGTCTAGTGCTTTGTTATCCTCGTTCAGGTTGGCAGATCGAGCCTCAACCACGATCTATTGTTAAAAAAAAGTGTACTTAAGTTGTTGACTTCTTATTAGAAAAATAAAGCACATGGATTCAAACCCATGACTTCTTGCTAGGTGAGTATAATCTAAACCACTGAACCTGAAGTTCTCTTTGTGTAAATACCAAAAAACAGTTTAACAGAAAGACGGTTTTCACCTATGATAAATACATTTCAAAAAGTGAAATTTTGTCGATGTGAGTTGTGATAATGTACTTGAATTAAATTTTATTAATATACTCTGAATTTTTTTTCTTAAAAGTGATTTCATTACGATAGTTTGTTCACTTTTGAAATGTCTGTCGGCTTCTGAAAATTTCTGTGTATGCCCTGGTAGGTGCATCATATTTGATAATTGATACCATATCCAGTACTAAGAGGCAGCTCAAATTTAACATGTACTTCATAGATTATATATCTTAGTTGTTGAATAGTGGCCTTTATTCTGCTTATCGTCTCATATGCAGTATGGCAAATCAAGCATCACTGAGCCTACTTGTGATGTGGTCATCTTGTTGTACCACCAGTTGATTTTTTTGGTTTTAGCAGTTTTCTGTGTTTCTGTGATTCTGTAAAAGCTTACTTCTGTTTGTAAATTCTTGAATACACCTCTTGGCATTCTTTAGATTTTTGTTATTATGTGCACCATTTTCATGTAGGATGACCAGAAGGTAGTCATGAAGCGGAAAACAGAGCTTGGTGGAACTTTTTCAATAGCTAGCTGGATACTTTTTATTGGTCTTTTTGCTGCGTGAGTACATGATGTTTTTTCTCTCTTTAATTTCTAGTGTTCCACTATTTCTTCCAAGTATCTGGCCTGTTCTTATCTAAAAATAAAAAAGAAAATCAGCCTGTTTTTCTTCTGAATAGTATTTTCTTCCGCTGTTCTTTTTTTCTTTACCTTCTATTCCATCTATAATTGACTCTTTATATATGCTTCCACAGTTTGCTATACCATATAATAGCGAAGCGAGCTATTGAGATGCACAATGTGAGAGCAACAAATGCACCTGATTTAGCTGCTTTTATAAACGATTTGGAGTTTAATATCACTACAATCTCAAGTATGAGCTGCCTACACTTACGTGGTCTTGGAACAGTCGTAACTGGGAATCCAGGGTTGATTGACTATCGATTTGCTCCTCTTTCAACATTTGCCAACTATTCCTGTATAAACACAACTAAGGGACCGACCATTATGCTCAAGTGCAGCAGATGTCCACTTAGCCGGGACAATGCCTATATTTCATGGCAATTTGTTGATCTCCCAAATAGTCCTGCAGCAGCTGCTGGATTTCAGTTCAATCTAACAGCAACAGATCCTAAAAACAGGAAACATG</genome_strand>
        <mrna_strand>CGATTATGCAATGTCCCAGCAACTCCTTTCGCTACAATGCTACACAATGCGAGTGCAACCCTGGTTACTTGTTTAACTTCACAAGTAGAATATGTTACTTGTTTGATGAATGGGGTCCTGTGGAAAGTGATTCTGGGGTTGATTATAGATCTTTATCGTTTCCTGGAAGTGGTGCCCTTTTCGATTTTGATTCAATTAGGAGGTTAACTCAATCGCAAGCTGTCTTTCTTGAAGCTACTCTTATTATGTTGCTTTCTTGGCTTTGTTTCTGTTTTTTTGCTCGGTGTGCTCCGCTTGGTGATGGCCGTTCTATTTGGTTTAAGATCCGATGGTGGATTAGTCGACTTGATATCTGCTTTGCATCTCGGCACTGGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAGAAGGTAGTCATGAAGCGGAAAACAGAGCTTGGTGGAACTTTTTCAATAGCTAGCTGGATACTTTTTATTGGTCTTTTTGCTGC..................................................................................................................................................................................................TTTGCTATACCATATAATAGCGAAGCGAGCTATTGAGATGCACAATGTGAGAGCAACAAATGCACCTGATTTAGCTGCTTTTATAAACGATTTGGAGTTTAATATCACTACAATCTCAAGTATGAGCTGCCTACACTTACGTGGTCTTGGAACAGTCGTAACTGGGAATCCAGGGTTGATTGACTATCGATTTGCTCCTCTTTCAACATTTGCCAACTATTCCTGTATAAACACAACTAAGGGACCGACCATTATGCTCAAGTGCAGCAGATGTCCACTTAGCCGGGACAATGCCTATATTTCATGGCAATTTGTTGATCTCCCAAATAGTCCTGCAGCAGCTGCTGGATTTCAGTTCAATCTAACAGCAACAGATCCTAAAAACAGGAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212227" ref_strand="+" ref_description="SGN-E212227 [cLEC-75-C24]">
      <seq>gcatctaagcgagcatttattgcttcgtgcctcgctatattggctgcacgttattcttgaaataagttcaccaattgtgccagttgatgttgaatttgatctcctttaacacccatctctgataccaagttgttatagtcccctgatatggatctggttatggggcactgtagtgtgaaatcgaatgttttggcgctggttcgttagagaaaacctgcaatttcttgagtttgaagtactcaaagacttagtaattttctgcttccatttcctaagatacagatagtttaaatacaacacttataaaataactaccccctagaaactcggacatgactgactacctaacttgaactggaatataaactgcactattacatgaaaataaatgtactattacagaaaagtaacttctactaaaaagaaattactttgtaacttgtaactaatggataactaaggagtgataacattggacttgtagaagccttttgggagttgaagaggaaagggaagtcatagtcccggtacagtaaaatatggacaagatacctctaaatggtgttctatttttgtgaatttagtgatttaacatgtagttttttcatatttcaaatgttgcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="57713" stop="58939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58013" g_stop="58639" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E212227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58013" e_stop="58639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTAAGCGAGCATTTATTGCTTCGTGCCTCGCTATATTGGCTGCACGTTATTCTTGAAATAAGTTCACCAATTGTGCCAGTTGATGTTGAATTTGATCTCCTTTAACACCCATCTCTGATACCAAGTTGTTATAGTCCCCTGATATGGATCTGGTTATGGGGCACTGTAGTGTGAAATCGAATGTTTTGGCGCTGGTTCGTTAGAGAAAACCTGCAATTTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTTCTGCTTCCATTTCCTAAGATACAGATAGTTTAAATACAACACTTATAAAATAACTACCCCCTAGAAACTCGGACATGACTGACTACCTAACTTGAACTGGAATATAAACTGCACTATTACATGAAAATAAATGTACTATTACAGAAAAGTAACTTCTACTAAAAAGAAATTACTTTGTAACTTGTAACTAATGGATAACTAAGGAGTGATAACATTGGACTTGTAGAAGCCTTTTGGGAGTTGAAGAGGAAAGGGAAGTCATAGTCCCGGTACAGTAAAATATGGACAAGATACCTCTAAATGGTGTTCTATTTTTGTGAATTTAGTGATTTAACATGTAGTTTTTTCATATTTCAAATGTTGCCTCAT</genome_strand>
        <mrna_strand>GCATCTAAGCGAGCATTTATTGCTTCGTGCCTCGCTATATTGGCTGCACGTTATTCTTGAAATAAGTTCACCAATTGTGCCAGTTGATGTTGAATTTGATCTCCTTTAACACCCATCTCTGATACCAAGTTGTTATAGTCCCCTGATATGGATCTGGTTATGGGGCACTGTAGTGTGAAATCGAATGTTTTGGCGCTGGTTCGTTAGAGAAAACCTGCAATTTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTTCTGCTTCCATTTCCTAAGATACAGATAGTTTAAATACAACACTTATAAAATAACTACCCCCTAGAAACTCGGACATGACTGACTACCTAACTTGAACTGGAATATAAACTGCACTATTACATGAAAATAAATGTACTATTACAGAAAAGTAACTTCTACTAAAAAGAAATTACTTTGTAACTTGTAACTAATGGATAACTAAGGAGTGATAACATTGGACTTGTAGAAGCCTTTTGGGAGTTGAAGAGGAAAGGGAAGTCATAGTCCCGGTACAGTAAAATATGGACAAGATACCTCTAAATGGTGTTCTATTTTTGTGAATTTAGTGATTTAACATGTAGTTTTTTCATATTTCAAATGTTGCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214815" ref_strand="+" ref_description="SGN-E214815 [cLEC-79-H2]">
      <seq>tgctccagatgtagagaatgctcttcaggctccagcttttcctgcagctaatgacataactgttccgcctccgccccttttaaaattgcaggctgctgatcatgtaagtatgaccaatctccagaaagatctccaaaacctctatgaatataatatgatgctcagggaaaagttgattgctgcccaatcgatgcttcattcattagccatcaaggagtcaactttagcagctgataatggcgatattattactagagaatgattatgctcaattaaggttgtaggtgtgtggatgaacaaaagcaagaaaatggctgctacttatctgaacattcaaaattctattctcttgaatgttctgagagctctggtgcagatgttgggacttttggtttctgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="58664" stop="60652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58964" g_stop="59046" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59047" i_stop="60033" i_length="987">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60034" g_stop="60352" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="402" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E214815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58964" e_stop="59046"/>
          <exon e_start="60034" e_stop="60352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCAGATGTAGAGAATGCTCTTCAGGCTCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAAGTAAGTCTAGAGTTACGAGATTAGTGTTTATTATGTTCTCCATCTTCCATGCCAACTAACAAGCCAACTGTTTAGATTTCATGATGTCCAATTTTAAGCTGCTCTTTCATGTTATGCTTCAGCCCTATTTAAGTTTATTCAAATTGCCCATCTTATCAAAGATCATTATAGATTTGGTCAACCTTTTTGGGTTAAATGCTCTGTGTCAAGTATAAGAAATTACAGGTCACGTTTATGAGAGCCCACTATGGATGATATTGATCTCTTTGATTATGACAACGTATTTGAAGATGAGAAACCCCAATTATGTTGGTGACTCGTTTCTTCTTGGTATTAGATAATTAAACCATTTTCTTGTTCATAATTTTTTATGGACCCTGTTTCTAGGATTATGGTTCCAAAATGTGGCGTTGTGTAGTAAACTTCCGCAAGGATATGCTTTGCCGATGTTTCTTTTTGTGGTGGTGGCCTTATAGATCTCAGCACCTCTGAGGTTTCAGGCTATATCGATTGTGAAAGGAGTGATAGGCGATAGGTAAAATAGTGAATTAGGGAGCTTGATAGTTGTCTAGGTTTGGGTGTTTAGTTTTGCTATTAAGCTAATTGGGAGATCATAGCTTAGAGTGTCAACAAACTTTATGTCAATAAGCTATCCTTTCCGGTTTTATAACTTTCCAGTTGAGCAAACAGCTGTGCTACATGTGGGTAGTTCTATTTTAAAAAACCAAAGCAGAGCTGTAGTAAATGTAATTGGAGACTGTTTCTGATTACTGAAACTTTTTGATGATGGAACTTCAGCATATTTGTTTTGAACTTTATTTATTGAGATGTCATATTATCTACTACACCATATGAACTAATGAAGTATTTATAAGGCTTCCATACATGTCCCTTAGAAGCATCTCTCTTTGCATTACCCCTTTAATCTTCTTGAGAAAGAGTGGTGAGGTGTTTGCCTAAATTGATGTCGCTGCTTCTGTTCTGCAGAATTGCAGGCTGCTGATCATGTAAGTATGACCAATCTCCAGAAAGATCTCCAAAACCTCTATGAATATAATATGATGCTCAGGGAAAAGTTGATTGCTGCCCAATCGATGCTTCATTCATTAGCCATCAAGGAGTCAACTTTAGCAGCTGATAATGGCGATATTATTACTAGAGAATGATTATGCTCAATTAAGGTTGTAGGTGTGTGGATGAACAAAAGCAAGAAAATGGCTGCTACTTATCTGAACATTCAAAATTCTATTCTCTTGAATGTTCTGAGAGCTCTGGTGCAGATGTTGGGACTTTTGGTTTCTGTGGA</genome_strand>
        <mrna_strand>TGCTCCAGATGTAGAGAATGCTCTTCAGGCTCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGGCTGCTGATCATGTAAGTATGACCAATCTCCAGAAAGATCTCCAAAACCTCTATGAATATAATATGATGCTCAGGGAAAAGTTGATTGCTGCCCAATCGATGCTTCATTCATTAGCCATCAAGGAGTCAACTTTAGCAGCTGATAATGGCGATATTATTACTAGAGAATGATTATGCTCAATTAAGGTTGTAGGTGTGTGGATGAACAAAAGCAAGAAAATGGCTGCTACTTATCTGAACATTCAAAATTCTATTCTCTTGAATGTTCTGAGAGCTCTGGTGCAGATGTTGGGACTTTTGGTTTCTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277572" ref_strand="+" ref_description="SGN-E277572 [cLER-6-G2]">
      <seq>tccagcttttcctgcagctaatgacataactgttccgcctccgccccttttaaaattgcaggctgctgatcatgtaagtatgaccaatctccagaaagatctccaaaacctctatgaatataatatgatgctcagggaaaagttgattgctgcccaatcgatgcttcattcattagccatcaaggagtcaactttagcagctgataatggcgatattattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="+" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="58694" stop="60505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58994" g_stop="59046" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59047" i_stop="60033" i_length="987">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60034" g_stop="60205" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="225" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="+" ref_id="SGN-E277572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58994" e_stop="59046"/>
          <exon e_start="60034" e_stop="60205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAAGTAAGTCTAGAGTTACGAGATTAGTGTTTATTATGTTCTCCATCTTCCATGCCAACTAACAAGCCAACTGTTTAGATTTCATGATGTCCAATTTTAAGCTGCTCTTTCATGTTATGCTTCAGCCCTATTTAAGTTTATTCAAATTGCCCATCTTATCAAAGATCATTATAGATTTGGTCAACCTTTTTGGGTTAAATGCTCTGTGTCAAGTATAAGAAATTACAGGTCACGTTTATGAGAGCCCACTATGGATGATATTGATCTCTTTGATTATGACAACGTATTTGAAGATGAGAAACCCCAATTATGTTGGTGACTCGTTTCTTCTTGGTATTAGATAATTAAACCATTTTCTTGTTCATAATTTTTTATGGACCCTGTTTCTAGGATTATGGTTCCAAAATGTGGCGTTGTGTAGTAAACTTCCGCAAGGATATGCTTTGCCGATGTTTCTTTTTGTGGTGGTGGCCTTATAGATCTCAGCACCTCTGAGGTTTCAGGCTATATCGATTGTGAAAGGAGTGATAGGCGATAGGTAAAATAGTGAATTAGGGAGCTTGATAGTTGTCTAGGTTTGGGTGTTTAGTTTTGCTATTAAGCTAATTGGGAGATCATAGCTTAGAGTGTCAACAAACTTTATGTCAATAAGCTATCCTTTCCGGTTTTATAACTTTCCAGTTGAGCAAACAGCTGTGCTACATGTGGGTAGTTCTATTTTAAAAAACCAAAGCAGAGCTGTAGTAAATGTAATTGGAGACTGTTTCTGATTACTGAAACTTTTTGATGATGGAACTTCAGCATATTTGTTTTGAACTTTATTTATTGAGATGTCATATTATCTACTACACCATATGAACTAATGAAGTATTTATAAGGCTTCCATACATGTCCCTTAGAAGCATCTCTCTTTGCATTACCCCTTTAATCTTCTTGAGAAAGAGTGGTGAGGTGTTTGCCTAAATTGATGTCGCTGCTTCTGTTCTGCAGAATTGCAGGCTGCTGATCATGTAAGTATGACCAATCTCCAGAAAGATCTCCAAAACCTCTATGAATATAATATGATGCTCAGGGAAAAGTTGATTGCTGCCCAATCGATGCTTCATTCATTAGCCATCAAGGAGTCAACTTTAGCAGCTGATAATGGCGATATTATTACTAG</genome_strand>
        <mrna_strand>TCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGGCTGCTGATCATGTAAGTATGACCAATCTCCAGAAAGATCTCCAAAACCTCTATGAATATAATATGATGCTCAGGGAAAAGTTGATTGCTGCCCAATCGATGCTTCATTCATTAGCCATCAAGGAGTCAACTTTAGCAGCTGATAATGGCGATATTATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330545" ref_strand="+" ref_description="SGN-E330545 [cTOD-8-A20]">
      <seq>tgtatccaatgcacactaatatcacaatcgaatttccttaaatcattgtcctaatcctacataatgtacattcaaatgtttaactcattaaggaacacaatcctgctcccaaaagaatactccacactaaaattatacaacaaacagaagacatcggcttcagccactccaacaatcatcaggtgataatgcatctgaatacacaatgtacagcacagaggacagtacttcatcaccttggcagtgttgcattcagtacttgttctactaacaaagtactactgcaactccacagaaaccaaaagtcccaacatctgcaccagagctctcagaacattcaagagaatagaattttgaatgttcagataagtagcagccattttcttgcttttgttcatccacacacctacaaccttaattgagcataatcattctctagtaataatatcgccattatcagctgctaaagttgactccttgatggctaatgaatgaagcatcgattgggcagcaatcaacttttccctgagcatcatattatattcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLe0018E07-ybVRV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLe0018E07.1" temp_strand="-" temp_description="C04SLe0018E07.1  CU570870.3 htgs_phase:3 submitted_to_sgn_as:C04SLe0018E07 sequenced_by:sanger upload_account_name:uk">
        <position start="60940" stop="59792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60640" g_stop="60092" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLe0018E07.1" gen_strand="-" ref_id="SGN-E330545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLe0018E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60640" e_stop="60092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCCAATGCACACTAATATCACAATCGAATTTCCTTAAATCATTGTCCTAATCCTACATAATGTACATTCAAATGTTTAACTCATTAAGGAACACAATCCTGCTCCCAAAAGAATACTCCACACTAAAATTATACAACAAACAGAAGACATCGGCTTCAGCCACTCCAACAATCATCAGGTGATAATGCATCTGAATACACAATGTACAGCACAGAGGACAGTACTTCATCACCTTGGCAGTGTTGCATTCAGTACTTGTTCTACTAACAAAGTACTACTGCAACTCCACAGAAACCAAAAGTCCCAACATCTGCACCAGAGCTCTCAGAACATTCAAGAGAATAGAATTTTGAATGTTCAGATAAGTAGCAGCCATTTTCTTGCTTTTGTTCATCCACACACCTACAACCTTAATTGAGCATAATCATTCTCTAGTAATAATATCGCCATTATCAGCTGCTAAAGTTGACTCCTTGATGGCTAATGAATGAAGCATCGATTGGGCAGCAATCAACTTTTCCCTGAGCATCATATTATATTCATAG</genome_strand>
        <mrna_strand>TGTATCCAATGCACACTAATATCACAATCGAATTTCCTTAAATCATTGTCCTAATCCTACATAATGTACATTCAAATGTTTAACTCATTAAGGAACACAATCCTGCTCCCAAAAGAATACTCCACACTAAAATTATACAACAAACAGAAGACATCGGCTTCAGCCACTCCAACAATCATCAGGTGATAATGCATCTGAATACACAATGTACAGCACAGAGGACAGTACTTCATCACCTTGGCAGTGTTGCATTCAGTACTTGTTCTACTAACAAAGTACTACTGCAACTCCACAGAAACCAAAAGTCCCAACATCTGCACCAGAGCTCTCAGAACATTCAAGAGAATAGAATTTTGAATGTTCAGATAAGTAGCAGCCATTTTCTTGCTTTTGTTCATCCACACACCTACAACCTTAATTGAGCATAATCATTCTCTAGTAATAATATCGCCATTATCAGCTGCTAAAGTTGACTCCTTGATGGCTAATGAATGAAGCATCGATTGGGCAGCAATCAACTTTTCCCTGAGCATCATATTATATTCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16394" PGL_stop="13124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16394" e_stop="15288"/>
            <exon e_start="13456" e_stop="13124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.043" e_score="0.995"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16394" e_stop="15288" e_length="1107"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.043">
            <gDNA_intron_boundary i_start="15287" i_stop="13457" i_length="1831"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="13456" e_stop="13124" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16394" stop="15652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15952" stop="15288"/>
              <exon start="13456" stop="13341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15886" stop="15288"/>
              <exon start="13456" stop="13349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15867" stop="15372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15509" stop="15288"/>
              <exon start="13456" stop="13124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACTCCTGTTGAAGATGAAGATGTTGGCAGAGCGGAGAAAGAAAGAGAGATAAATGTAGATGAGAATGTTAAAGAAGAAGGATACGAAGAAGATGTGGGTGAATACTTGGAAGGAGAGAATGAGGGACCATTGAAGGAGGAGAATTTAGAAACCGAACGAGCTAGAGAAGCAGAAAATTGGGAATTTGATGAAAAGATTAAGGTAACTGAGGGTTTGGATCTGGTCGCCAAAGAAGCCAGGGGAGAAAATGAGGGCGAAAAAGACCTTACTTTAACACCAGGTCTGCCAGATAAGAATTTTGTTGAAGTATATGTAGGTGATGGAGTGAAGGAAGATTCATTAGGGAGTTCAGGTGTACTTGAGGGAAATGAGGATAGAAAGGTTACGCGTCCTGAAATCATAGAGAAGCCATTGGTAAGCAAGGATGAGAGGGTAGATAGTCTTGTGAGAGAGCTTCAAGGAACAAAAACTGGAGGAGGACCTGAGGTTACTTCGGAAGAAAACGTGATAATAGAAGTAACAAGGAAACCAAATGTCAGCAAAAGCTCAAAGAAACACCACAAAAAGAAGAAAGCAAGTGAAAGTAAAGATGTTGCAATATCAGAGAAAGGGGAGGGGTTGAGCAACAAGCAGCAGGAGGACACTGATGTGAAAATCATAGGGAAAAAGGAAGAGGTAAAGGATGAAGTTAAGGTGGAGCATGACGAGAAGCATTTACGGGTGAAAAGGGAGACCAAAGAAGGAAGAGACGAGGTCAACCAAAGTGGTGTTTCCAAGAAGGCCAAGAAAGTTGCTGAGATGGACAGAACACTGCCCGGAAGCAGAGATGCAGGAATTAGCAAGGATGGTGGGCAAGCTGCGAACTCGACCAAGGATCCTAAAGGAGCATCCAATGGCAAGCATGTTGCAAAAGATGCTTTGCGTCCACTGGAAGGCAAGGATAACCTGGTAGCTGCAAAAGAGGTTCAAAGGAAGGCACCTGATGACCGCGGGAACCTTCCGTCTGAAAGAAAAGGGAACACTGATCGAAAGGAAAATGCCTATGCCGGTGGTGTTGATCAGATTTCTGGAAGAGCAGGGATTCCAGAGGCCAAACCTGTCAAG : TGAGGAGAAGATATGGGAGAAGATGAACGCAATGAGAACAATTGTGGGATACACAGCAGCCACCCAACCTTTGTTGGTCGATGAACTTAAGGCACTGTACATCTTTACTGGAGTTGAGCCTCCATCTATGTTCAGTAACCCGTCCACTTTGGAAGAAGTGAATGACAAGCTTCAGTTTCTTATGTCGATTGTGGGAATAAAGTGAAGTGTTAGTACTTTGTTTGGTCTGTATTTTCTTGTTGTCTCCTTTTGTGTTGTTTGTCAAATTTTAGCTTGATACTGGATTTGTGTATGCTTATGCTAGAAATTGCAAGTTTTGTTGTAAAATCACAG</gDNA_template>
            <first_frame> Q  T  P  V  E  D  E  D  V  G  R  A  E  K  E  R  E  I  N  V  D  E  N  V  K  E  E  G  Y  E  E  D  V  G  E  Y  L  E  G  E  N  E  G  P  L  K  E  E  N  L  E  T  E  R  A  R  E  A  E  N  W  E  F  D  E  K  I  K  V  T  E  G  L  D  L  V  A  K  E  A  R  G  E  N  E  G  E  K  D  L  T  L  T  P  G  L  P  D  K  N  F  V  E  V  Y  V  G  D  G  V  K  E  D  S  L  G  S  S  G  V  L  E  G  N  E  D  R  K  V  T  R  P  E  I  I  E  K  P  L  V  S  K  D  E  R  V  D  S  L  V  R  E  L  Q  G  T  K  T  G  G  G  P  E  V  T  S  E  E  N  V  I  I  E  V  T  R  K  P  N  V  S  K  S  S  K  K  H  H  K  K  K  K  A  S  E  S  K  D  V  A  I  S  E  K  G  E  G  L  S  N  K  Q  Q  E  D  T  D  V  K  I  I  G  K  K  E  E  V  K  D  E  V  K  V  E  H  D  E  K  H  L  R  V  K  R  E  T  K  E  G  R  D  E  V  N  Q  S  G  V  S  K  K  A  K  K  V  A  E  M  D  R  T  L  P  G  S  R  D  A  G  I  S  K  D  G  G  Q  A  A  N  S  T  K  D  P  K  G  A  S  N  G  K  H  V  A  K  D  A  L  R  P  L  E  G  K  D  N  L  V  A  A  K  E  V  Q  R  K  A  P  D  D  R  G  N  L  P  S  E  R  K  G  N  T  D  R  K  E  N  A  Y  A  G  G  V  D  Q  I  S  G  R  A  G  I  P  E  A  K  P  V  K  :  *  G  E  D  M  G  E  D  E  R  N  E  N  N  C  G  I  H  S  S  H  P  T  F  V  G  R  *  T  *  G  T  V  H  L  Y  W  S  *  A  S  I  Y  V  Q  *  P  V  H  F  G  R  S  E  *  Q  A  S  V  S  Y  V  D  C  G  N  K  V  K  C  *  Y  F  V  W  S  V  F  S  C  C  L  L  L  C  C  L  S  N  F  S  L  I  L  D  L  C  M  L  M  L  E  I  A  S  F  V  V  K  S  Q </first_frame>
            <second_frame>  R  L  L  L  K  M  K  M  L  A  E  R  R  K  K  E  R  *  M  *  M  R  M  L  K  K  K  D  T  K  K  M  W  V  N  T  W  K  E  R  M  R  D  H  *  R  R  R  I  *  K  P  N  E  L  E  K  Q  K  I  G  N  L  M  K  R  L  R  *  L  R  V  W  I  W  S  P  K  K  P  G  E  K  M  R  A  K  K  T  L  L  *  H  Q  V  C  Q  I  R  I  L  L  K  Y  M  *  V  M  E  *  R  K  I  H  *  G  V  Q  V  Y  L  R  E  M  R  I  E  R  L  R  V  L  K  S  *  R  S  H  W  *  A  R  M  R  G  *  I  V  L  *  E  S  F  K  E  Q  K  L  E  E  D  L  R  L  L  R  K  K  T  *  *  *  K  *  Q  G  N  Q  M  S  A  K  A  Q  R  N  T  T  K  R  R  K  Q  V  K  V  K  M  L  Q  Y  Q  R  K  G  R  G  *  A  T  S  S  R  R  T  L  M  *  K  S  *  G  K  R  K  R  *  R  M  K  L  R  W  S  M  T  R  S  I  Y  G  *  K  G  R  P  K  K  E  E  T  R  S  T  K  V  V  F  P  R  R  P  R  K  L  L  R  W  T  E  H  C  P  E  A  E  M  Q  E  L  A  R  M  V  G  K  L  R  T  R  P  R  I  L  K  E  H  P  M  A  S  M  L  Q  K  M  L  C  V  H  W  K  A  R  I  T  W  *  L  Q  K  R  F  K  G  R  H  L  M  T  A  G  T  F  R  L  K  E  K  G  T  L  I  E  R  K  M  P  M  P  V  V  L  I  R  F  L  E  E  Q  G  F  Q  R  P  N  L  S  S :   E  E  K  I  W  E  K  M  N  A  M  R  T  I  V  G  Y  T  A  A  T  Q  P  L  L  V  D  E  L  K  A  L  Y  I  F  T  G  V  E  P  P  S  M  F  S  N  P  S  T  L  E  E  V  N  D  K  L  Q  F  L  M  S  I  V  G  I  K  *  S  V  S  T  L  F  G  L  Y  F  L  V  V  S  F  C  V  V  C  Q  I  L  A  *  Y  W  I  C  V  C  L  C  *  K  L  Q  V  L  L  *  N  H   </second_frame>
            <third_frame>   D  S  C  *  R  *  R  C  W  Q  S  G  E  R  K  R  D  K  C  R  *  E  C  *  R  R  R  I  R  R  R  C  G  *  I  L  G  R  R  E  *  G  T  I  E  G  G  E  F  R  N  R  T  S  *  R  S  R  K  L  G  I  *  *  K  D  *  G  N  *  G  F  G  S  G  R  Q  R  S  Q  G  R  K  *  G  R  K  R  P  Y  F  N  T  R  S  A  R  *  E  F  C  *  S  I  C  R  *  W  S  E  G  R  F  I  R  E  F  R  C  T  *  G  K  *  G  *  K  G  Y  A  S  *  N  H  R  E  A  I  G  K  Q  G  *  E  G  R  *  S  C  E  R  A  S  R  N  K  N  W  R  R  T  *  G  Y  F  G  R  K  R  D  N  R  S  N  K  E  T  K  C  Q  Q  K  L  K  E  T  P  Q  K  E  E  S  K  *  K  *  R  C  C  N  I  R  E  R  G  G  V  E  Q  Q  A  A  G  G  H  *  C  E  N  H  R  E  K  G  R  G  K  G  *  S  *  G  G  A  *  R  E  A  F  T  G  E  K  G  D  Q  R  R  K  R  R  G  Q  P  K  W  C  F  Q  E  G  Q  E  S  C  *  D  G  Q  N  T  A  R  K  Q  R  C  R  N  *  Q  G  W  W  A  S  C  E  L  D  Q  G  S  *  R  S  I  Q  W  Q  A  C  C  K  R  C  F  A  S  T  G  R  Q  G  *  P  G  S  C  K  R  G  S  K  E  G  T  *  *  P  R  E  P  S  V  *  K  K  R  E  H  *  S  K  G  K  C  L  C  R  W  C  *  S  D  F  W  K  S  R  D  S  R  G  Q  T  C  Q   : V  R  R  R  Y  G  R  R  *  T  Q  *  E  Q  L  W  D  T  Q  Q  P  P  N  L  C  W  S  M  N  L  R  H  C  T  S  L  L  E  L  S  L  H  L  C  S  V  T  R  P  L  W  K  K  *  M  T  S  F  S  F  L  C  R  L  W  E  *  S  E  V  L  V  L  C  L  V  C  I  F  L  L  S  P  F  V  L  F  V  K  F  *  L  D  T  G  F  V  Y  A  Y  A  R  N  C  K  F  C  C  K  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLe0018E07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16394" stop="15288"/>
                    <exon start="13456" stop="13454"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPVEDEDVGRAEKEREINVDENVKEEGYEEDVGEYLEGENEGPLKEENLETERAREAENWEFDEKIKVTEGLDLVAKEARGENEGEKDLTLTPGLPDKNFVEVYVGDGVKEDSLGSSGVLEGNEDRKVTRPEIIEKPLVSKDERVDSLVRELQGTKTGGGPEVTSEENVIIEVTRKPNVSKSSKKHHKKKKASESKDVAISEKGEGLSNKQQEDTDVKIIGKKEEVKDEVKVEHDEKHLRVKRETKEGRDEVNQSGVSKKAKKVAEMDRTLPGSRDAGISKDGGQAANSTKDPKGASNGKHVAKDALRPLEGKDNLVAAKEVQRKAPDDRGNLPSERKGNTDRKENAYAGGVDQISGRAGIPEAKPVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23909" PGL_stop="24550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23909" e_stop="24550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23909" e_stop="24550" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23909" stop="24498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23909" stop="24498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24122" stop="24550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTAAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTAAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCGGACTCATCTGATTCTTCTGGTAGTGGTATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  *  V  E  F  H  L  F  D  V  R  H  S  R  K  V  *  E  G  F  *  E  V  *  S  L  *  W  *  F  *  F  F  S  C  Y  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  E  E  C  H  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  R  Y  M  *  T  *  C  L  F  E  I  M  C  S  K  *  *  P  *  F  K  *  N  G  F  G  N  E  R  K  I  Q  E  I  L  G  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  L  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  C  D  I  C  K  *  V  W  K  R  F  Q  K  S  T  I  F  I  G  L  I  *  F  F  W  *  W  Y  F </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  R  W  N  S  T  Y  L  M  L  D  T  A  E  K  F  E  K  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  T  D  V  C  E  D  G  S  I  A  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  T  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  D  I  C  E  L  D  A  Y  L  K  L  C  V  A  S  D  D  L  D  L  S  K  M  A  S  G  M  K  E  K  F  K  K  Y  W  G  T  P  K  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  T  K  V  E  A  Y  L  R  D  L  F  A  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  G  S  G  I   </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  G  G  I  P  P  I  *  C  *  T  Q  Q  K  S  L  R  R  L  L  R  G  L  I  F  M  M  V  I  L  I  L  F  L  L  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  K  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  W  L  R  E  *  K  K  N  S  R  N  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  S  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  R  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  S  M  E  K  V  P  K  V  N  H  L  H  R  T  H  L  I  L  L  V  V  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLe0018E07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23910" stop="24548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECDKMLSLDVPTRWNSTYLMLDTAEKFEKAFERFDLYDGNFNSFLATDVCEDGSIAGSIQYEDWANVRNVTKFLEKFYELTLKVSGSRYVTCNVHFEDICELDAYLKLCVASDDLDLSKMASGMKEKFKKYWGTPKKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNTKVEAYLRDLFAIYVSKYGKGSKSQPSSSDSSDSSGSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24865" PGL_stop="25458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24865" e_stop="24948"/>
            <exon e_start="25041" e_stop="25098"/>
            <exon e_start="25190" e_stop="25458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.983"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="24865" e_stop="24948" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24949" i_stop="25040" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="25041" e_stop="25098" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="25099" i_stop="25189" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="25190" e_stop="25458" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24865" stop="24948"/>
              <exon start="25041" stop="25098"/>
              <exon start="25190" stop="25458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24866" stop="24948"/>
              <exon start="25041" stop="25098"/>
              <exon start="25190" stop="25458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24875" stop="24948"/>
              <exon start="25041" stop="25098"/>
              <exon start="25190" stop="25458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTGTCCAAGATTGGCTTAGACAAGAAACCAAGCCTATTTGTGTTGAAGAAAGTTTGGAGTTTCTTGAAAAAATTGAACTTG : AGATGGCAAATAGTGGAAGAAGCTCTTCCATTGTTGATGTATGATTGACTTGCAAGCG : GTCCAAGGGTCAAGACAATGAAGAAATAATTTTGTTGGCACGTGACACTCGAAAGTTGAAAGCGATCTCATGGAAGAAAGTCAAGAAACTCATTATTGTTGTTTGTTATTGTTGAAAGTAATCTCATGGAAGAAGACAAGAAGTTCAAAATACATTGTTTGTTGCTTATTATTGTTTATTATGAGTTAATGAAAGACTTTATTGTTACTTGTTAGATTCTTATTATGTTGTATTTGTGAAGACATTAAGTTATTAACTACAAATCTACA</gDNA_template>
            <first_frame> F  L  S  K  I  G  L  D  K  K  P  S  L  F  V  L  K  K  V  W  S  F  L  K  K  L  N  L  :  R  W  Q  I  V  E  E  A  L  P  L  L  M  Y  D  *  L  A  S   : G  P  R  V  K  T  M  K  K  *  F  C  W  H  V  T  L  E  S  *  K  R  S  H  G  R  K  S  R  N  S  L  L  L  F  V  I  V  E  S  N  L  M  E  E  D  K  K  F  K  I  H  C  L  L  L  I  I  V  Y  Y  E  L  M  K  D  F  I  V  T  C  *  I  L  I  M  L  Y  L  *  R  H  *  V  I  N  Y  K  S  T </first_frame>
            <second_frame>  F  C  P  R  L  A  *  T  R  N  Q  A  Y  L  C  *  R  K  F  G  V  S  *  K  N  *  T  * :   D  G  K  *  W  K  K  L  F  H  C  *  C  M  I  D  L  Q  A  :  V  Q  G  S  R  Q  *  R  N  N  F  V  G  T  *  H  S  K  V  E  S  D  L  M  E  E  S  Q  E  T  H  Y  C  C  L  L  L  L  K  V  I  S  W  K  K  T  R  S  S  K  Y  I  V  C  C  L  L  L  F  I  M  S  *  *  K  T  L  L  L  L  V  R  F  L  L  C  C  I  C  E  D  I  K  L  L  T  T  N  L   </second_frame>
            <third_frame>   F  V  Q  D  W  L  R  Q  E  T  K  P  I  C  V  E  E  S  L  E  F  L  E  K  I  E  L   : E  M  A  N  S  G  R  S  S  S  I  V  D  V  *  L  T  C  K  R :   S  K  G  Q  D  N  E  E  I  I  L  L  A  R  D  T  R  K  L  K  A  I  S  W  K  K  V  K  K  L  I  I  V  V  C  Y  C  *  K  *  S  H  G  R  R  Q  E  V  Q  N  T  L  F  V  A  Y  Y  C  L  L  *  V  N  E  R  L  Y  C  Y  L  L  D  S  Y  Y  V  V  F  V  K  T  L  S  Y  *  L  Q  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLe0018E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="43319" PGL_stop="51277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43319" e_stop="43695"/>
            <exon e_start="50597" e_stop="50688"/>
            <exon e_start="50883" e_stop="51277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.926" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="43319" e_stop="43695" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43696" i_stop="50596" i_length="6901"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50597" e_stop="50688" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.926" acc_prob="0.992">
            <gDNA_intron_boundary i_start="50689" i_stop="50882" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50883" e_stop="51277" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43319" stop="43695"/>
              <exon start="50597" stop="50688"/>
              <exon start="50883" stop="51277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATGCAATGTCCCAGCAACTCCTTTCGCTACAATGCTACACAATGCGAGTGCAACCCTGGTTACTTGTTTAACTTCACAAGTAGAATATGTTACTTGTTTGATGAATGGGGTCCTGTGGAAAGTGATTCTGGGGTTGATTATAGATCTTTATCGTTTCCTGGAAGTGGTGCCCTTTTCGATTTTGATTCAATTAGGAGGTTAACTCAATCGCAAGCTGTCTTTCTTGAAGCTACTCTTATTATGTTGCTTTCTTGGCTTTGTTTCTGTTTTTTTGCTCGGTGTGCTCCGCTTGGTGATGGCCGTTCTATTTGGTTTAAGATCCGATGGTGGATTAGTCGACTTGATATCTGCTTTGCATCTCGGCACTGGCTT : GATGACCAGAAGGTAGTCATGAAGCGGAAAACAGAGCTTGGTGGAACTTTTTCAATAGCTAGCTGGATACTTTTTATTGGTCTTTTTGCTGC : TTTGCTATACCATATAATAGCGAAGCGAGCTATTGAGATGCACAATGTGAGAGCAACAAATGCACCTGATTTAGCTGCTTTTATAAACGATTTGGAGTTTAATATCACTACAATCTCAAGTATGAGCTGCCTACACTTACGTGGTCTTGGAACAGTCGTAACTGGGAATCCAGGGTTGATTGACTATCGATTTGCTCCTCTTTCAACATTTGCCAACTATTCCTGTATAAACACAACTAAGGGACCGACCATTATGCTCAAGTGCAGCAGATGTCCACTTAGCCGGGACAATGCCTATATTTCATGGCAATTTGTTGATCTCCCAAATAGTCCTGCAGCAGCTGCTGGATTTCAGTTCAATCTAACAGCAACAGATCCTAAAAACAGGAAACATG</gDNA_template>
            <first_frame> R  K  C  N  V  P  A  T  P  F  A  T  M  L  H  N  A  S  A  T  L  V  T  C  L  T  S  Q  V  E  Y  V  T  C  L  M  N  G  V  L  W  K  V  I  L  G  L  I  I  D  L  Y  R  F  L  E  V  V  P  F  S  I  L  I  Q  L  G  G  *  L  N  R  K  L  S  F  L  K  L  L  L  L  C  C  F  L  G  F  V  S  V  F  L  L  G  V  L  R  L  V  M  A  V  L  F  G  L  R  S  D  G  G  L  V  D  L  I  S  A  L  H  L  G  T  G  L :   M  T  R  R  *  S  *  S  G  K  Q  S  L  V  E  L  F  Q  *  L  A  G  Y  F  L  L  V  F  L  L   : L  C  Y  T  I  *  *  R  S  E  L  L  R  C  T  M  *  E  Q  Q  M  H  L  I  *  L  L  L  *  T  I  W  S  L  I  S  L  Q  S  Q  V  *  A  A  Y  T  Y  V  V  L  E  Q  S  *  L  G  I  Q  G  *  L  T  I  D  L  L  L  F  Q  H  L  P  T  I  P  V  *  T  Q  L  R  D  R  P  L  C  S  S  A  A  D  V  H  L  A  G  T  M  P  I  F  H  G  N  L  L  I  S  Q  I  V  L  Q  Q  L  L  D  F  S  S  I  *  Q  Q  Q  I  L  K  T  G  N  M </first_frame>
            <second_frame>  E  N  A  M  S  Q  Q  L  L  S  L  Q  C  Y  T  M  R  V  Q  P  W  L  L  V  *  L  H  K  *  N  M  L  L  V  *  *  M  G  S  C  G  K  *  F  W  G  *  L  *  I  F  I  V  S  W  K  W  C  P  F  R  F  *  F  N  *  E  V  N  S  I  A  S  C  L  S  *  S  Y  S  Y  Y  V  A  F  L  A  L  F  L  F  F  C  S  V  C  S  A  W  *  W  P  F  Y  L  V  *  D  P  M  V  D  *  S  T  *  Y  L  L  C  I  S  A  L  A   : *  *  P  E  G  S  H  E  A  E  N  R  A  W  W  N  F  F  N  S  *  L  D  T  F  Y  W  S  F  C  C  :  F  A  I  P  Y  N  S  E  A  S  Y  *  D  A  Q  C  E  S  N  K  C  T  *  F  S  C  F  Y  K  R  F  G  V  *  Y  H  Y  N  L  K  Y  E  L  P  T  L  T  W  S  W  N  S  R  N  W  E  S  R  V  D  *  L  S  I  C  S  S  F  N  I  C  Q  L  F  L  Y  K  H  N  *  G  T  D  H  Y  A  Q  V  Q  Q  M  S  T  *  P  G  Q  C  L  Y  F  M  A  I  C  *  S  P  K  *  S  C  S  S  C  W  I  S  V  Q  S  N  S  N  R  S  *  K  Q  E  T   </second_frame>
            <third_frame>   K  M  Q  C  P  S  N  S  F  R  Y  N  A  T  Q  C  E  C  N  P  G  Y  L  F  N  F  T  S  R  I  C  Y  L  F  D  E  W  G  P  V  E  S  D  S  G  V  D  Y  R  S  L  S  F  P  G  S  G  A  L  F  D  F  D  S  I  R  R  L  T  Q  S  Q  A  V  F  L  E  A  T  L  I  M  L  L  S  W  L  C  F  C  F  F  A  R  C  A  P  L  G  D  G  R  S  I  W  F  K  I  R  W  W  I  S  R  L  D  I  C  F  A  S  R  H  W  L  :  D  D  Q  K  V  V  M  K  R  K  T  E  L  G  G  T  F  S  I  A  S  W  I  L  F  I  G  L  F  A  A :   L  L  Y  H  I  I  A  K  R  A  I  E  M  H  N  V  R  A  T  N  A  P  D  L  A  A  F  I  N  D  L  E  F  N  I  T  T  I  S  S  M  S  C  L  H  L  R  G  L  G  T  V  V  T  G  N  P  G  L  I  D  Y  R  F  A  P  L  S  T  F  A  N  Y  S  C  I  N  T  T  K  G  P  T  I  M  L  K  C  S  R  C  P  L  S  R  D  N  A  Y  I  S  W  Q  F  V  D  L  P  N  S  P  A  A  A  A  G  F  Q  F  N  L  T  A  T  D  P  K  N  R  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLe0018E07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43321" stop="43695"/>
                    <exon start="50597" stop="50688"/>
                    <exon start="50883" stop="51276"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQCPSNSFRYNATQCECNPGYLFNFTSRICYLFDEWGPVESDSGVDYRSLSFPGSGALFDFDSIRRLTQSQAVFLEATLIMLLSWLCFCFFARCAPLGDGRSIWFKIRWWISRLDICFASRHWLDDQKVVMKRKTELGGTFSIASWILFIGLFAALLYHIIAKRAIEMHNVRATNAPDLAAFINDLEFNITTISSMSCLHLRGLGTVVTGNPGLIDYRFAPLSTFANYSCINTTKGPTIMLKCSRCPLSRDNAYISWQFVDLPNSPAAAAGFQFNLTATDPKNRKH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="58013" PGL_stop="58639"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58013" e_stop="58639"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58013" e_stop="58639" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58013" stop="58639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCTAAGCGAGCATTTATTGCTTCGTGCCTCGCTATATTGGCTGCACGTTATTCTTGAAATAAGTTCACCAATTGTGCCAGTTGATGTTGAATTTGATCTCCTTTAACACCCATCTCTGATACCAAGTTGTTATAGTCCCCTGATATGGATCTGGTTATGGGGCACTGTAGTGTGAAATCGAATGTTTTGGCGCTGGTTCGTTAGAGAAAACCTGCAATTTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTTCTGCTTCCATTTCCTAAGATACAGATAGTTTAAATACAACACTTATAAAATAACTACCCCCTAGAAACTCGGACATGACTGACTACCTAACTTGAACTGGAATATAAACTGCACTATTACATGAAAATAAATGTACTATTACAGAAAAGTAACTTCTACTAAAAAGAAATTACTTTGTAACTTGTAACTAATGGATAACTAAGGAGTGATAACATTGGACTTGTAGAAGCCTTTTGGGAGTTGAAGAGGAAAGGGAAGTCATAGTCCCGGTACAGTAAAATATGGACAAGATACCTCTAAATGGTGTTCTATTTTTGTGAATTTAGTGATTTAACATGTAGTTTTTTCATATTTCAAATGTTGCCTCAT</gDNA_template>
            <first_frame> A  S  K  R  A  F  I  A  S  C  L  A  I  L  A  A  R  Y  S  *  N  K  F  T  N  C  A  S  *  C  *  I  *  S  P  L  T  P  I  S  D  T  K  L  L  *  S  P  D  M  D  L  V  M  G  H  C  S  V  K  S  N  V  L  A  L  V  R  *  R  K  P  A  I  S  *  V  *  S  T  Q  R  L  S  N  F  L  L  P  F  P  K  I  Q  I  V  *  I  Q  H  L  *  N  N  Y  P  L  E  T  R  T  *  L  T  T  *  L  E  L  E  Y  K  L  H  Y  Y  M  K  I  N  V  L  L  Q  K  S  N  F  Y  *  K  E  I  T  L  *  L  V  T  N  G  *  L  R  S  D  N  I  G  L  V  E  A  F  W  E  L  K  R  K  G  K  S  *  S  R  Y  S  K  I  W  T  R  Y  L  *  M  V  F  Y  F  C  E  F  S  D  L  T  C  S  F  F  I  F  Q  M  L  P  H </first_frame>
            <second_frame>  H  L  S  E  H  L  L  L  R  A  S  L  Y  W  L  H  V  I  L  E  I  S  S  P  I  V  P  V  D  V  E  F  D  L  L  *  H  P  S  L  I  P  S  C  Y  S  P  L  I  W  I  W  L  W  G  T  V  V  *  N  R  M  F  W  R  W  F  V  R  E  N  L  Q  F  L  E  F  E  V  L  K  D  L  V  I  F  C  F  H  F  L  R  Y  R  *  F  K  Y  N  T  Y  K  I  T  T  P  *  K  L  G  H  D  *  L  P  N  L  N  W  N  I  N  C  T  I  T  *  K  *  M  Y  Y  Y  R  K  V  T  S  T  K  K  K  L  L  C  N  L  *  L  M  D  N  *  G  V  I  T  L  D  L  *  K  P  F  G  S  *  R  G  K  G  S  H  S  P  G  T  V  K  Y  G  Q  D  T  S  K  W  C  S  I  F  V  N  L  V  I  *  H  V  V  F  S  Y  F  K  C  C  L   </second_frame>
            <third_frame>   I  *  A  S  I  Y  C  F  V  P  R  Y  I  G  C  T  L  F  L  K  *  V  H  Q  L  C  Q  L  M  L  N  L  I  S  F  N  T  H  L  *  Y  Q  V  V  I  V  P  *  Y  G  S  G  Y  G  A  L  *  C  E  I  E  C  F  G  A  G  S  L  E  K  T  C  N  F  L  S  L  K  Y  S  K  T  *  *  F  S  A  S  I  S  *  D  T  D  S  L  N  T  T  L  I  K  *  L  P  P  R  N  S  D  M  T  D  Y  L  T  *  T  G  I  *  T  A  L  L  H  E  N  K  C  T  I  T  E  K  *  L  L  L  K  R  N  Y  F  V  T  C  N  *  W  I  T  K  E  *  *  H  W  T  C  R  S  L  L  G  V  E  E  E  R  E  V  I  V  P  V  Q  *  N  M  D  K  I  P  L  N  G  V  L  F  L  *  I  *  *  F  N  M  *  F  F  H  I  S  N  V  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLe0018E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58964" PGL_stop="60352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58964" e_stop="59046"/>
            <exon e_start="60034" e_stop="60352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58964" e_stop="59046" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.943">
            <gDNA_intron_boundary i_start="59047" i_stop="60033" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60034" e_stop="60352" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58964" stop="59046"/>
              <exon start="60034" stop="60352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58994" stop="59046"/>
              <exon start="60034" stop="60205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTCCAGATGTAGAGAATGCTCTTCAGGCTCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAA : AATTGCAGGCTGCTGATCATGTAAGTATGACCAATCTCCAGAAAGATCTCCAAAACCTCTATGAATATAATATGATGCTCAGGGAAAAGTTGATTGCTGCCCAATCGATGCTTCATTCATTAGCCATCAAGGAGTCAACTTTAGCAGCTGATAATGGCGATATTATTACTAGAGAATGATTATGCTCAATTAAGGTTGTAGGTGTGTGGATGAACAAAAGCAAGAAAATGGCTGCTACTTATCTGAACATTCAAAATTCTATTCTCTTGAATGTTCTGAGAGCTCTGGTGCAGATGTTGGGACTTTTGGTTTCTGTGGA</gDNA_template>
            <first_frame> C  S  R  C  R  E  C  S  S  G  S  S  F  S  C  S  *  *  H  N  C  S  A  S  A  P  F  K :   I  A  G  C  *  S  C  K  Y  D  Q  S  P  E  R  S  P  K  P  L  *  I  *  Y  D  A  Q  G  K  V  D  C  C  P  I  D  A  S  F  I  S  H  Q  G  V  N  F  S  S  *  *  W  R  Y  Y  Y  *  R  M  I  M  L  N  *  G  C  R  C  V  D  E  Q  K  Q  E  N  G  C  Y  L  S  E  H  S  K  F  Y  S  L  E  C  S  E  S  S  G  A  D  V  G  T  F  G  F  C  G </first_frame>
            <second_frame>  A  P  D  V  E  N  A  L  Q  A  P  A  F  P  A  A  N  D  I  T  V  P  P  P  P  L  L   : K  L  Q  A  A  D  H  V  S  M  T  N  L  Q  K  D  L  Q  N  L  Y  E  Y  N  M  M  L  R  E  K  L  I  A  A  Q  S  M  L  H  S  L  A  I  K  E  S  T  L  A  A  D  N  G  D  I  I  T  R  E  *  L  C  S  I  K  V  V  G  V  W  M  N  K  S  K  K  M  A  A  T  Y  L  N  I  Q  N  S  I  L  L  N  V  L  R  A  L  V  Q  M  L  G  L  L  V  S  V   </second_frame>
            <third_frame>   L  Q  M  *  R  M  L  F  R  L  Q  L  F  L  Q  L  M  T  *  L  F  R  L  R  P  F  *  :  N  C  R  L  L  I  M  *  V  *  P  I  S  R  K  I  S  K  T  S  M  N  I  I  *  C  S  G  K  S  *  L  L  P  N  R  C  F  I  H  *  P  S  R  S  Q  L  *  Q  L  I  M  A  I  L  L  L  E  N  D  Y  A  Q  L  R  L  *  V  C  G  *  T  K  A  R  K  W  L  L  L  I  *  T  F  K  I  L  F  S  *  M  F  *  E  L  W  C  R  C  W  D  F  W  F  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLe0018E07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58965" stop="59046"/>
                    <exon start="60034" stop="60212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APDVENALQAPAFPAANDITVPPPPLLKLQAADHVSMTNLQKDLQNLYEYNMMLREKLIAAQSMLHSLAIKESTLAADNGDIITRE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="60640" PGL_stop="60092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60640" e_stop="60092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60640" e_stop="60092" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60640" stop="60092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATCCAATGCACACTAATATCACAATCGAATTTCCTTAAATCATTGTCCTAATCCTACATAATGTACATTCAAATGTTTAACTCATTAAGGAACACAATCCTGCTCCCAAAAGAATACTCCACACTAAAATTATACAACAAACAGAAGACATCGGCTTCAGCCACTCCAACAATCATCAGGTGATAATGCATCTGAATACACAATGTACAGCACAGAGGACAGTACTTCATCACCTTGGCAGTGTTGCATTCAGTACTTGTTCTACTAACAAAGTACTACTGCAACTCCACAGAAACCAAAAGTCCCAACATCTGCACCAGAGCTCTCAGAACATTCAAGAGAATAGAATTTTGAATGTTCAGATAAGTAGCAGCCATTTTCTTGCTTTTGTTCATCCACACACCTACAACCTTAATTGAGCATAATCATTCTCTAGTAATAATATCGCCATTATCAGCTGCTAAAGTTGACTCCTTGATGGCTAATGAATGAAGCATCGATTGGGCAGCAATCAACTTTTCCCTGAGCATCATATTATATTCATAG</gDNA_template>
            <first_frame> C  I  Q  C  T  L  I  S  Q  S  N  F  L  K  S  L  S  *  S  Y  I  M  Y  I  Q  M  F  N  S  L  R  N  T  I  L  L  P  K  E  Y  S  T  L  K  L  Y  N  K  Q  K  T  S  A  S  A  T  P  T  I  I  R  *  *  C  I  *  I  H  N  V  Q  H  R  G  Q  Y  F  I  T  L  A  V  L  H  S  V  L  V  L  L  T  K  Y  Y  C  N  S  T  E  T  K  S  P  N  I  C  T  R  A  L  R  T  F  K  R  I  E  F  *  M  F  R  *  V  A  A  I  F  L  L  L  F  I  H  T  P  T  T  L  I  E  H  N  H  S  L  V  I  I  S  P  L  S  A  A  K  V  D  S  L  M  A  N  E  *  S  I  D  W  A  A  I  N  F  S  L  S  I  I  L  Y  S  * </first_frame>
            <second_frame>  V  S  N  A  H  *  Y  H  N  R  I  S  L  N  H  C  P  N  P  T  *  C  T  F  K  C  L  T  H  *  G  T  Q  S  C  S  Q  K  N  T  P  H  *  N  Y  T  T  N  R  R  H  R  L  Q  P  L  Q  Q  S  S  G  D  N  A  S  E  Y  T  M  Y  S  T  E  D  S  T  S  S  P  W  Q  C  C  I  Q  Y  L  F  Y  *  Q  S  T  T  A  T  P  Q  K  P  K  V  P  T  S  A  P  E  L  S  E  H  S  R  E  *  N  F  E  C  S  D  K  *  Q  P  F  S  C  F  C  S  S  T  H  L  Q  P  *  L  S  I  I  I  L  *  *  *  Y  R  H  Y  Q  L  L  K  L  T  P  *  W  L  M  N  E  A  S  I  G  Q  Q  S  T  F  P  *  A  S  Y  Y  I  H   </second_frame>
            <third_frame>   Y  P  M  H  T  N  I  T  I  E  F  P  *  I  I  V  L  I  L  H  N  V  H  S  N  V  *  L  I  K  E  H  N  P  A  P  K  R  I  L  H  T  K  I  I  Q  Q  T  E  D  I  G  F  S  H  S  N  N  H  Q  V  I  M  H  L  N  T  Q  C  T  A  Q  R  T  V  L  H  H  L  G  S  V  A  F  S  T  C  S  T  N  K  V  L  L  Q  L  H  R  N  Q  K  S  Q  H  L  H  Q  S  S  Q  N  I  Q  E  N  R  I  L  N  V  Q  I  S  S  S  H  F  L  A  F  V  H  P  H  T  Y  N  L  N  *  A  *  S  F  S  S  N  N  I  A  I  I  S  C  *  S  *  L  L  D  G  *  *  M  K  H  R  L  G  S  N  Q  L  F  P  E  H  H  I  I  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLe0018E07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60557" stop="60219"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKEHNPAPKRILHTKIIQQTEDIGFSHSNNHQVIMHLNTQCTAQRTVLHHLGSVAFSTCSTNKVLLQLHRNQKSQHLHQSSQNIQENRILNVQISSSHFLAFVHPHTYNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 34 chains have been computed
$ 
$ memory statistics:
$ 33520 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2095 bytes was the average size of a spliced alignment
$ 12776 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1825 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:25:03
-->
