<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:52:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1577" ref_strand="+" ref_description="SGN-M1577 T0739 [cos_markers]">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="-" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="3977" stop="651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3677" g_stop="3462" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3461" i_stop="3336" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3335" g_stop="3252" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3251" i_stop="2953" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2952" g_stop="2901" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2900" i_stop="1306" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1305" g_stop="1149" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1148" i_stop="999" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="998" g_stop="951" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="557" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="-" ref_id="SGN-M1577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3677" e_stop="3462"/>
          <exon e_start="3335" e_stop="3252"/>
          <exon e_start="2952" e_stop="2901"/>
          <exon e_start="1305" e_stop="1149"/>
          <exon e_start="998" e_stop="951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7535" ref_strand="+" ref_description="SGN-M7535 C2_At2g45730 [cosii_markers]">
      <seq>cttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="-" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="29038" stop="24196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28738" g_stop="28565" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28564" i_stop="28411" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28410" g_stop="28283" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28282" i_stop="27274" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27273" g_stop="27165" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27164" i_stop="26727" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26726" g_stop="26645" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="493" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26644" i_stop="26575" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26574" g_stop="26504" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="564" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26503" i_stop="25827" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25826" g_stop="25785" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="606" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25784" i_stop="25503" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25502" g_stop="25378" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="731" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25377" i_stop="25075" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25074" g_stop="24981" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="825" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24980" i_stop="24827" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24826" g_stop="24760" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="892" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="24759" i_stop="24648" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="24647" g_stop="24496" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1044" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="-" ref_id="SGN-M7535" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1044</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28738" e_stop="28565"/>
          <exon e_start="28410" e_stop="28283"/>
          <exon e_start="27273" e_stop="27165"/>
          <exon e_start="26726" e_stop="26645"/>
          <exon e_start="26574" e_stop="26504"/>
          <exon e_start="25826" e_stop="25785"/>
          <exon e_start="25502" e_stop="25378"/>
          <exon e_start="25074" e_stop="24981"/>
          <exon e_start="24826" e_stop="24760"/>
          <exon e_start="24647" e_stop="24496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</genome_strand>
        <mrna_strand>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7535-2" ref_strand="+" ref_description="SGN-M7535-2 C2_At2g45730-2 [cosii_markers]">
      <seq>tgaaaaagcagttgatgaggatttgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccatttgggtctctgtttcaagtggagtcgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaatggccttgaagaaaaagatgtggatggatctaaagacaaccgtgcacttgttgataataatactgctcagagtctcactagtgaagatatcgacgagatgcgaaatcagggggcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagaaaagtatagggttaagaaacagaagaaatatgcacctcgagtactaattgangcgtccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggattcactatctctactactctgcttggggaatgttactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="-" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="28990" stop="25147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28690" g_stop="28565" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28564" i_stop="28411" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28410" g_stop="28283" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28282" i_stop="27274" i_length="1009">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27273" g_stop="27165" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="363" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27164" i_stop="26727" i_length="438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26726" g_stop="26645" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="445" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26644" i_stop="26575" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26574" g_stop="26504" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="517" r_length="72" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26503" i_stop="25827" i_length="677">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25826" g_stop="25785" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="559" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25784" i_stop="25503" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25502" g_stop="25447" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="615" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="-" ref_id="SGN-M7535-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7535-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28690" e_stop="28565"/>
          <exon e_start="28410" e_stop="28283"/>
          <exon e_start="27273" e_stop="27165"/>
          <exon e_start="26726" e_stop="26645"/>
          <exon e_start="26574" e_stop="26504"/>
          <exon e_start="25826" e_stop="25785"/>
          <exon e_start="25502" e_stop="25447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACT-TTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAA</genome_strand>
        <mrna_strand>TGAAAAAGCAGTTGATGAGGATTTGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTTGGGTCTCTGTTTCAAGTGGAGTCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCCTTGAAGAAAAAGATGTGGATGGATCTAAAGACAACCGTGCACTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATCGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGGGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GAAAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTAATTGANGCGTCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATTCACTATCTCTACTACTCTGCTTGGGGAATGTTACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6816" ref_strand="+" ref_description="SGN-M6816 C2_At1g47830 [cosii_markers]">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="+" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="52364" stop="56173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52664" g_stop="52784" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52785" i_stop="52930" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52931" g_stop="53029" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53030" i_stop="53111" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53112" g_stop="53162" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53163" i_stop="54465" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54466" g_stop="54639" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54640" i_stop="54941" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54942" g_stop="55001" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55002" i_stop="55529" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55530" g_stop="55872" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="848" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="887"/>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="+" ref_id="SGN-M6816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52664" e_stop="52784"/>
          <exon e_start="52931" e_stop="53029"/>
          <exon e_start="53112" e_stop="53162"/>
          <exon e_start="54466" e_stop="54639"/>
          <exon e_start="54942" e_stop="55001"/>
          <exon e_start="55530" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6816-2" ref_strand="+" ref_description="SGN-M6816-2 C2_At1g47830-2 [cosii_markers]">
      <seq>ggtttttacaaattaaagaatcaaagagatttctccaacttttttcaattgtttctccagctattttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggtccatcggttggtggtgaatagagatcccaaattcaccaactttgttgagttccgtacccacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaatgaattggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcattgagagaatgggagagttggagaagcaggagtgaagatttctgtgctttgctcaagagtcgaaacaaacactttccttttccttcatcatctgcacttctcttccggctggttgtatttactgcattagacattctgtatcctgttgataccttcatgttgatgcggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctcttatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="+" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="52432" stop="56084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52731" g_stop="52784" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="92" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52785" i_stop="52930" i_length="146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52931" g_stop="53029" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="191" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53030" i_stop="53111" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53112" g_stop="53162" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="242" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53163" i_stop="54465" i_length="1303">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.658" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54466" g_stop="54639" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="416" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54640" i_stop="54941" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54942" g_stop="55001" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="476" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55002" i_stop="55529" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55530" g_stop="55784" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="731" r_length="255" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="+" ref_id="SGN-M6816-2" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6816-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52731" e_stop="52784"/>
          <exon e_start="52931" e_stop="53029"/>
          <exon e_start="53112" e_stop="53162"/>
          <exon e_start="54466" e_stop="54639"/>
          <exon e_start="54942" e_stop="55001"/>
          <exon e_start="55530" e_stop="55784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTC-TATCTATTC</genome_strand>
        <mrna_strand>CTTTTTTCAATTGTTTCTCCAGCTATTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTCCATCGGTTGGTGGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACCCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAATGAATTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATTGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGATTTCTG-TGCTTTGCTCAAGAGTCGAAACAAACACTTTCCTTTTCCTTCATCATCTGCACTTCTCTTCCGGCTGGTTGTATTTACTGCATTAGACATTCTGTATCCTGTTGATACCTTCATGTTGATGCGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTTATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7062" ref_strand="+" ref_description="SGN-M7062 C2_At1g75730 [cosii_markers]">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0331L22-cZNTd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0331L22.1" temp_strand="-" temp_description="C04HBa0331L22.1  CU222538.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0331L22 sequenced_by:sanger upload_account_name:uk">
        <position start="61710" stop="58055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61410" g_stop="61286" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61285" i_stop="60258" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60257" g_stop="60076" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60075" i_stop="59996" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59995" g_stop="59938" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59937" i_stop="59560" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59559" g_stop="59438" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59437" i_stop="59305" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59304" g_stop="59097" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="695" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59096" i_stop="59012" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59011" g_stop="58833" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="874" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58832" i_stop="58758" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58757" g_stop="58703" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="929" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58702" i_stop="58580" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58579" g_stop="58510" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="999" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="58509" i_stop="58434" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="58433" g_stop="58355" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1078" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0331L22.1" gen_strand="-" ref_id="SGN-M7062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0331L22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61410" e_stop="61286"/>
          <exon e_start="60257" e_stop="60076"/>
          <exon e_start="59995" e_stop="59938"/>
          <exon e_start="59559" e_stop="59438"/>
          <exon e_start="59304" e_stop="59097"/>
          <exon e_start="59011" e_stop="58833"/>
          <exon e_start="58757" e_stop="58703"/>
          <exon e_start="58579" e_stop="58510"/>
          <exon e_start="58433" e_stop="58355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3677" PGL_stop="951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3677" e_stop="3462"/>
            <exon e_start="3335" e_stop="3252"/>
            <exon e_start="2952" e_stop="2901"/>
            <exon e_start="1305" e_stop="1149"/>
            <exon e_start="998" e_stop="951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3677" e_stop="3462" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3461" i_stop="3336" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3335" e_stop="3252" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="3251" i_stop="2953" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2952" e_stop="2901" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="2900" i_stop="1306" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1305" e_stop="1149" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="1148" i_stop="999" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="998" e_stop="951" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3677" stop="3462"/>
              <exon start="3335" stop="3252"/>
              <exon start="2952" stop="2901"/>
              <exon start="1305" stop="1149"/>
              <exon start="998" stop="951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATG</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G   </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0331L22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3641" stop="3462"/>
                    <exon start="3335" stop="3252"/>
                    <exon start="2952" stop="2901"/>
                    <exon start="1305" stop="1149"/>
                    <exon start="998" stop="977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28738" PGL_stop="24496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28738" e_stop="28565"/>
            <exon e_start="28410" e_stop="28283"/>
            <exon e_start="27273" e_stop="27165"/>
            <exon e_start="26726" e_stop="26645"/>
            <exon e_start="26574" e_stop="26504"/>
            <exon e_start="25826" e_stop="25785"/>
            <exon e_start="25502" e_stop="25378"/>
            <exon e_start="25074" e_stop="24981"/>
            <exon e_start="24826" e_stop="24760"/>
            <exon e_start="24647" e_stop="24496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28738" e_stop="28565" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="28564" i_stop="28411" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28410" e_stop="28283" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28282" i_stop="27274" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27273" e_stop="27165" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27164" i_stop="26727" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26726" e_stop="26645" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26644" i_stop="26575" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26574" e_stop="26504" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="26503" i_stop="25827" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25826" e_stop="25785" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="25784" i_stop="25503" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="25502" e_stop="25378" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25377" i_stop="25075" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25074" e_stop="24981" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24980" i_stop="24827" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24826" e_stop="24760" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="24759" i_stop="24648" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="24647" e_stop="24496" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28738" stop="28565"/>
              <exon start="28410" stop="28283"/>
              <exon start="27273" stop="27165"/>
              <exon start="26726" stop="26645"/>
              <exon start="26574" stop="26504"/>
              <exon start="25826" stop="25785"/>
              <exon start="25502" stop="25378"/>
              <exon start="25074" stop="24981"/>
              <exon start="24826" stop="24760"/>
              <exon start="24647" stop="24496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28690" stop="28565"/>
              <exon start="28410" stop="28283"/>
              <exon start="27273" stop="27165"/>
              <exon start="26726" stop="26645"/>
              <exon start="26574" stop="26504"/>
              <exon start="25826" stop="25785"/>
              <exon start="25502" stop="25447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7535-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGA</gDNA_template>
            <first_frame> L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R </first_frame>
            <second_frame>  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L   </second_frame>
            <third_frame>   S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0331L22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28728" stop="28565"/>
                    <exon start="28410" stop="28283"/>
                    <exon start="27273" stop="27165"/>
                    <exon start="26726" stop="26645"/>
                    <exon start="26574" stop="26504"/>
                    <exon start="25826" stop="25785"/>
                    <exon start="25502" stop="25378"/>
                    <exon start="25074" stop="24981"/>
                    <exon start="24826" stop="24760"/>
                    <exon start="24647" stop="24498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="52664" PGL_stop="55872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52664" e_stop="52784"/>
            <exon e_start="52931" e_stop="53029"/>
            <exon e_start="53112" e_stop="53162"/>
            <exon e_start="54466" e_stop="54639"/>
            <exon e_start="54942" e_stop="55001"/>
            <exon e_start="55530" e_stop="55872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52664" e_stop="52784" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="52785" i_stop="52930" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52931" e_stop="53029" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53030" i_stop="53111" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53112" e_stop="53162" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="53163" i_stop="54465" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54466" e_stop="54639" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54640" i_stop="54941" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54942" e_stop="55001" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55002" i_stop="55529" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="55530" e_stop="55872" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52664" stop="52784"/>
              <exon start="52931" stop="53029"/>
              <exon start="53112" stop="53162"/>
              <exon start="54466" stop="54639"/>
              <exon start="54942" stop="55001"/>
              <exon start="55530" stop="55872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52731" stop="52784"/>
              <exon start="52931" stop="53029"/>
              <exon start="53112" stop="53162"/>
              <exon start="54466" stop="54639"/>
              <exon start="54942" stop="55001"/>
              <exon start="55530" stop="55784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6816-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0331L22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52719" stop="52784"/>
                    <exon start="52931" stop="53029"/>
                    <exon start="53112" stop="53162"/>
                    <exon start="54466" stop="54639"/>
                    <exon start="54942" stop="55001"/>
                    <exon start="55530" stop="55571"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="61410" PGL_stop="58355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61410" e_stop="61286"/>
            <exon e_start="60257" e_stop="60076"/>
            <exon e_start="59995" e_stop="59938"/>
            <exon e_start="59559" e_stop="59438"/>
            <exon e_start="59304" e_stop="59097"/>
            <exon e_start="59011" e_stop="58833"/>
            <exon e_start="58757" e_stop="58703"/>
            <exon e_start="58579" e_stop="58510"/>
            <exon e_start="58433" e_stop="58355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61410" e_stop="61286" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61285" i_stop="60258" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60257" e_stop="60076" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60075" i_stop="59996" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59995" e_stop="59938" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="59937" i_stop="59560" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59559" e_stop="59438" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="59437" i_stop="59305" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59304" e_stop="59097" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="59096" i_stop="59012" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59011" e_stop="58833" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58832" i_stop="58758" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58757" e_stop="58703" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58702" i_stop="58580" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="58579" e_stop="58510" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58509" i_stop="58434" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58433" e_stop="58355" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61410" stop="61286"/>
              <exon start="60257" stop="60076"/>
              <exon start="59995" stop="59938"/>
              <exon start="59559" stop="59438"/>
              <exon start="59304" stop="59097"/>
              <exon start="59011" stop="58833"/>
              <exon start="58757" stop="58703"/>
              <exon start="58579" stop="58510"/>
              <exon start="58433" stop="58355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0331L22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60177" stop="60076"/>
                    <exon start="59995" stop="59938"/>
                    <exon start="59559" stop="59438"/>
                    <exon start="59304" stop="59097"/>
                    <exon start="59011" stop="58833"/>
                    <exon start="58757" stop="58703"/>
                    <exon start="58579" stop="58510"/>
                    <exon start="58433" stop="58355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 13168 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2194 bytes was the average size of a spliced alignment
$ 9888 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2472 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 65 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:52:53
-->
