<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 08:30:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348247" ref_strand="+" ref_description="SGN-E348247 [cTOF-27-G2]">
      <seq>gtacttccagattgatggaaagatgaaactcggaatgacgataaatggcgccttcaagcatgccttagctacttggaaatcttgggttgaaaagaaggtcaacactgataggacacgtgtattctttcggactttcgaagctactcattggaggtgtgcttaattttctgatataacctgctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="291" stop="1076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="591" g_stop="776" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E348247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="591" e_stop="776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTCCAGATTGATGGAAAGATGAAACTCGGAATGACGATAAATGGCGCCTTCAAGCATGCCTTAGCTACTTGGAAATCTTGGGTTGAAAAGAAGGTCAACACTGATAGGACACGTGTATTCTTTCGGACTTTCGAAGCTACTCATTGGAGGTGTGCTTAATTTTCTGATATAACCTGCTCGTC</genome_strand>
        <mrna_strand>GTACTTCCAGATTGATGGAAAGATGAAACTCGGAATGACGATAAATGGCGCCTTCAAGCATGCCTTAGCTACTTGGAAATCTTGGGTTGAAAAGAAGGTCAACACTGATAGGACACGTGTATTCTTTCGGACTTTCGAAGCTACTCATTGGAGGTGTGCTTAATTTTCTGATATAACCTGCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328068" ref_strand="+" ref_description="SGN-E328068 [cTOC-22-O24]">
      <seq>cttcttccaattcatgattcataaataagcttttctttctccaattttttctcattatccaattaatatttttactttctttttctattcaaaaacttcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttgaaacaagtcagtgctcctaagtccattagtttgccaataccggttaaaaccagtttcggcgcttgactcagatgttccctatcctattgaacagagttcagaaggtttaaagagcagcgagagctttaagcaatgggattcattgactgcgaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaaaatactgaatgctcgtaaccttctagcaggaaatcaagctgcattatttgcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13875" stop="19247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="609" r_length="447" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18947" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="774" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E328068" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14336"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTG-AACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTC</genome_strand>
        <mrna_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAA-AATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328634" ref_strand="+" ref_description="SGN-E328634 [cTOC-23-L12]">
      <seq>cttcttccaattcatgattcataaataagcttttctttctccaattttttctcattatccaattaatatttttactttctttttctattcaaaaacttcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggttaaaaccagtttcggcgcttgactcagatgttccctatcctattgaacagagttcagaaggtttaaagagcagcgagagctttaagcaatgggattcattgactgcgaaatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13875" stop="19147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="608" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18847" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="674" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E328634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14336"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCA</genome_strand>
        <mrna_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328002" ref_strand="+" ref_description="SGN-E328002 [cTOC-22-E11]">
      <seq>cttcttccaattcatgattcataaataagcttttctttctccaattttttctcattatccaattaatatttttactttctttttctattcaaaaacttcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttgaaacaagtcagtgctcctaagtccattagtttgccaataccggttaaaaccagtttcggcgcttgactcagatgttccctatcctattggacagagttcagaaggtttaaagagcagcgagagctttaagcaatgggggatcatgactgcgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13875" stop="19124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="609" r_length="447" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18844" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="672" r_length="63" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E328002" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14336"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTG-AACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTT</genome_strand>
        <mrna_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGGACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGGGATCATGACTGCGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327921" ref_strand="+" ref_description="SGN-E327921 [cTOC-22-O18]">
      <seq>cttcttccaattcatgattcataaataagcttttctttctccaattttttctcattatccaattaatatttttactttctttttctattcaaaaacttcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggttaaaaccagtttcggcgcttgactcagatgttccctatcctattggacagagttcagaaggtttaaagagcagcgagagctttaagcaatggggatcattgactgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13875" stop="19140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="608" r_length="446" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18840" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="667" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E327921" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14336"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAA</genome_strand>
        <mrna_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGGACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGGATCATTGACTGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327990" ref_strand="+" ref_description="SGN-E327990 [cTOC-22-P8]">
      <seq>cttcttccaattcatgattcataaataagcttttctttctccaattttttctcattatccaattaatatttttactttctttttctattcaaaaacttcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccgattctccctccatataaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13875" stop="18848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14175" g_stop="14336" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18548" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="489" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E327990" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14175" e_stop="14336"/>
          <exon e_start="18222" e_stop="18548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGA</genome_strand>
        <mrna_strand>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCGATTCTCCCTCCATATAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279960" ref_strand="+" ref_description="SGN-E279960 [cLER-8-J17]">
      <seq>tcaaatagcatccatattcttatcttacaatcaaactatcaaaatcttgtacaacttttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggttaaaaccagtttcggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13972" stop="18936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14272" g_stop="14336" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18636" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="480" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E279960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14272" e_stop="14336"/>
          <exon e_start="18222" e_stop="18636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCT</genome_strand>
        <mrna_strand>TCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204489" ref_strand="+" ref_description="SGN-E204489 [cLEC-24-O9]">
      <seq>attcttatcttacaatcaaactatcaaaatcttgtacaactgttcctcagatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcaaacagaataatactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13987" stop="18874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14287" g_stop="14336" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18574" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="403" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E204489" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14287" e_stop="14336"/>
          <exon e_start="18222" e_stop="18574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTG</genome_strand>
        <mrna_strand>ATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTGTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590314" ref_strand="+" ref_description="SGN-E590314 [43907]">
      <seq>gttctcttacaaccaaaatatcaaaatcttgtacaaacttcagcttttcgccagatttggtaccggctggactttgtgctggagcttaccagtaattgtcttttcattttagtggagaaccattagaagttggatcagctgcctctttgggagttacctttgtagccactacgattgaccttttttgatatctcccttacagctgatgataattataaacttatagttccttcatttttcgatatcttgaatggctggatctttgttaccagtgggtaaggcagtcctacgttcccgccaaccctccaactgttatgccttcaatgctgatctccagcatccaaagtcaattccaattctccctctatataagaaaagagtcaaacaaaacaatactttgaacaaatcggtgctcttaagtccattagtttgtcaataccggttaaaaccggtttctgcgcttgactcagatgttgcccgccctattgatcagagttctgaagatttaaagagtagcaagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactcaatgctcgtaaccttctagcaggaaatcaagctgcattatttgctgttccatggctggggatgttcactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="13991" stop="19256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14290" g_stop="14336" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.745"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14337" i_stop="17656" i_length="3320">
            <donor d_prob="0.947" d_score="0.74"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17657" g_stop="17663" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="54" r_length="6" r_score="0.571"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17664" i_stop="18221" i_length="558">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="493" r_length="439" r_score="0.901"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="667" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.047" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19043" g_stop="19057" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="682" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E590314" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14290" e_stop="14336"/>
          <exon e_start="17657" e_stop="17663"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCTTACAATCAAACTATCAAAATCTTGTAC-AACTTTTCCTCAGGTAATTGTTTAATAATCTAATGTTTAATTATATGTTTTTTTTTCAAGTAACATTAATTCAGTAATGACGAATTATTTTAATTAAGTAGTGAACAACATATTGATTTTATACTAAAAATCTTTGCTTTTTCAATCATAGATGGTTTTTCTTTAAATAATAAATGAGTATTAAATTGCAAATTTTAGTAAATTTTTCTATTATTAAATCATAGATAAATAATTAAGGTGAAGGAGGAGTGTTTGGTGCACATATATAAGTCCATTTATTATGATCACGTTGTATTACACCTCCATACTTGTCATTTCGTGATTTCAAAGTTGCTCCAAGTGGATCTCGAGAAAATAGAGAATTCCACATATTTTAGTACATTTTTATACTTTTTTTATTTGACCATTATTTTGAATTTTATTTTTACTTCACATTTTTAACATATTAAGAAAAAATAATTAAATTTTCTTATATTTTATATTAAAGTATTGATTACTGACGTAACATAAATATATCCAATTAATAAAAATAATATAATAAACTAATCACATCATATCATTATTTTCTTAATAAATATATTTTGAAAAATAAAAGTGAACCAATAGAATAGTTATATACATGAGTCAACTAGGTTATATTATAGATTGTGAATCCCCGTGTAGCCATTTAATTCTTTCACTTCTTTTAATTCCTATTTATGTGTCGTTACTGTTAAAAATAGATAGTATTTTTTAGTATTTGTTATGTCATAAAATCAATACATGATGACACTATTTTTTCTATTTTATCCTTTGAAAGTTTTTAGCTTGAAACTTGAAAGTATACATTTATCTAACATAGAAAAATTAAGTACTACATCCCTTCTTATATATGTCGTCTTTTAATAGAACACTTGTCGCAATCACAAAAGCAATATATAAATAATATTATTCTTTCTATTTTATCCTAGAAAGTATAAATTTGATTAACATAGAAAAGTTAAATAATAAGTTAATGCGCAATAGTGAATGTAATTAATCAAATAAATTAATTTTCATTCATTTATTAAAAATCTGACTGAGATCACAAAATAAGAAGACAATAATAAATTTACCTAATTTCTTAAGGGATATGAAACTTAAAATAAACAACTAAATAAGAATGGGGGAGTATACACAAATCCCACAATCCATATGACCCATCCTTCATTTTTTTGAGATGCCCGTCTATTTTGGATCAAGTTTTGATATTTGAGCTTTCTTTTTTATATGTGTCTATGACCTAACAAAGTTATTATCTTTATCATACAAAATTGAGCAAGTTCCAACTTCTTGTTTTTTTTTCCATCTTAGAGGTATATAATCGTGGAATAAAGAGTTAGTTAAATATAATTAGGTTAAGTAATGTTCAATGACATTATAGATTTATGTCATGTGTAGTGTATAATAATTTATGATTGATAATCATTTAATTATATATTCATATAATAATAGCTAATAAAAATAACAAAGCTGTCAATTTTTTTTAAAAAGAAAAAGAAAAACTATCAAATAAAACAATTAAGTGTACTAAGTTAATATTTTCAAGAAAAATATTAAGATTGATATGAATATGCGAACTTTCTGACTTTTTATCCGTCAAACTTCTTCGGGAGTAATTTTCCACGTGCTTTCTTCATTCTGAAATAATCTTCAAAAATAGATCAAACTTAAAAACATCATTGAATTCTAAAATAGTAATTCAATTAAAGAACATGATAAGATAAAAAAAAACTTATTTTAAGATTTTCAAATAATTATAAAAATATTTATTCAGATTCTCCAAAAGTGTCAAATTCTTTAAAATTAGAATAATTTAAAAAATTCAATACAAGTACGAGATTTGACGGGTAAAAAAGTCGAGAAGTCCGCATAATCTCGTCAGCCTTATTTTTAAAAAAAAAATTAGCTTGGGTACACTTAATTATTTTATTTAATAATTTTAAAAAATAAAAATAATTGACGAATTTGTTGTTTTTATAATTAAAATGAATATAATTTTAATGAATTTCAACCATAAATTATCCATAAATTATTATATGGTACATATGGCATAAATTTATAAGGTCACTAAAAATTACTTAACCGAATCTTTGTTCGTAATTGAGTTCTTTTTGTTTAGGTTTTTAGATATCGTCAATGTATCTACAACTTTGAAACTTATATCTCATCTTTGTGTAAGAGTTTGCAACATAATGGTTTACTAATTAATGATAGGCAATTGATCATTATTGTTAGGTATGTGTTTGAGTAAAATAAAAGAAAATACTTATAAATACTTATTTTTAAGTTAATTTAATAAAAATAAGTAAAAAAATCGTAAGCTATAATAATTTTCAACTTATAATTTTTTATTTATAAGTGGTAAATTGAAAATCAGTCCAAACATATACTTGTCCCTTGAGAGGAGTTCTTTCAAACAAATTTATTAGTCACAATTTTTATATTTAGACATATTATGTTATGGTTTCACTATTATAAACCTAAATCTGACAAATATATTACTATTAAGATTAAATTTAAAACATGTGAAAATGGATTTATTTTTTTTTAATAAAGAAATGGAAAATAGGTGACTAATTTTTAAAAAAAAATAAGGATTTTTCTCCCCAAACTCTCAAATTATCATCTTCTTCTCCACATTTCCCTCATCTTTGCCACTTCACTCTCTCATTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTGGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACTGGA</genome_strand>
        <mrna_strand>GTTCTCTTACAACCAAAATATCAAAATCTTGTACAAACTTCAGCTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCA-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTACCGGCTGGACTTTGTGCTGGAGCTTACCAGTAATTGTCTTTTCATTTTAGTGGAGAACCATTAGAAGTTGGATCAGCTGCCTCTTTGGGAGTTA-CCTTTGTAGCCACTACGATTGACCTTTTT---T---GATATCTCCCTTACAGCTGATGATAATTATAAACTTATAGTTCCTTCATTTTTCGATATCTTGAATGGCTGGATCTTTGTTACCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCCTCCAACTGTTATGCCTTCAATGCTGATCTCCAGCATCCAAAGTCAATTCCAATTCTCCCTCTATATAAGAAAAGAGTCAAACAAAACAATACTTTGAACAAATCGGTGCTCTTAAGTCCATTAGTTTGTCAATACCGGTTAAAACCGGTTTCTGCGCTTGACTCAGATGTTGCCCGCCCTATTGATCAG..................................................................................................................AGTTCTGAAGATTTAAAGAGTAGCAAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTCAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTG.......................................................................................GGGATGTTCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303815" ref_strand="+" ref_description="SGN-E303815 [cLEX-4-N3]">
      <seq>tttcagtcatcaattgaaagagaagctcaattcactattatattacaaacctcttcttatgcccctaaaagggtccaattaaagccaactataaaaggatttcgtacaggctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttatacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="16715" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17015" g_stop="17111" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17112" i_stop="18221" i_length="1110">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18507" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="384" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E303815" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17015" e_stop="17111"/>
          <exon e_start="18222" e_stop="18507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTCATCAATTGAAAG-GAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCT</genome_strand>
        <mrna_strand>TTTCAGTCATCAATTGAAAGAGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374159" ref_strand="+" ref_description="SGN-E374159 [TUS-33-N21]">
      <seq>ttaaagccaactataaaaggatttcgtacagctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttgtacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcgaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggctaaaaccagtttcggcgcttgactcagatgttccctatcctattgaacagagttcagaaggtttaaagagcagcgagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcanataatactgaatgctcgntaccttctagcaggaaatcaagctgcattatttgctgttccatggctggggatgttcactgggattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="16792" stop="19256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17092" g_stop="17111" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17112" i_stop="18221" i_length="1110">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="465" r_length="445" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="639" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.047" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19043" g_stop="19063" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="661" r_length="22" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E374159" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17092" e_stop="17111"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTGGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACT-GGATTACTT</genome_strand>
        <mrna_strand>TTAAAGCCAACTATAAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACA-GCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTGTACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCGAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGCTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCANATAATACTGAATGCTCGNTACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTG.......................................................................................GGGATGTTCACTGGGATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362823" ref_strand="+" ref_description="SGN-E362823 [cLPP-2-O12]">
      <seq>ttaaagccaactataaaaggatttcgtacagctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttgtacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcgaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggctaaaaccagtttcggcgcttgactcagatgttccctatcctattgaacagagttcagaaggtttaaagagcagcgagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactgaatgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="16792" stop="19207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17092" g_stop="17111" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17112" i_stop="18221" i_length="1110">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="465" r_length="445" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18907" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="591" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E362823" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17092" e_stop="17111"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGT</genome_strand>
        <mrna_strand>TTAAAGCCAACTATAAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACA-GCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTGTACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCGAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGCTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362944" ref_strand="+" ref_description="SGN-E362944 [cLPP-2-O13]">
      <seq>ttaaagccaactataaaaggatttcgtacagctggactttgtgttggagcataccagtaattgtcttttcattttagttgaaaactattagaagttggatcagctgcctctttgggaattaccctttgtacccattacgattgacctttttagataaaaatatctcccttacagctggtgatgaatataaacttatagttccttcattttttgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccttccaaatgttatatgttcaatgctgatctccagcatccgaagtcaattccaattctccctccatataagaaaagagtcgaacagaataatactttgaacaagtcagtgctcctaagtccattagtttgccaataccggctaaaaccagtttcggcgcttgactcagatgttccctatcctattgaacagagttcagaaggtttaaagagcaacgagagctttaaacaatgggattcattgactgcaaaatttgcaggagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="16792" stop="19155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17092" g_stop="17111" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17112" i_stop="18221" i_length="1110">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="465" r_length="445" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18782" g_stop="18855" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="539" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E362944" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17092" e_stop="17111"/>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCCAACTATAAAAGGGTATGCTTTGAGATTTACATTTCTGATGTTAAAATATTAATGGGTATTTTCAAGAACCGAAACAATCTTTGAATTTTGGTATGAAATGTTATTTTGGTGAATAGTTTTTGTTTGTTTTCTTGTAAATAAAAGAGCTTTGAATAGACTTCTGCTAGTTTTATATTCATGCATTTTTCAGAAATTTGTAAACTTGCTGCAGAATTCTAGGAGATGATGCACTATTAGAAGTATGGGGTGATGAACTAAAGATGGTTTTAGGTGTAAAGTTTGGAACTTTATGATGAAGCTATGCTATTTATGGTGGATGGTTTAAGCATTTCATAGCTATGTATTCTTTGCAATTTACTCAAGTTTGAAATGTTATTATCAGTTCACCAATTTCACAATGATTTAAGTTTTTTTTTTCTTTATTAGAGTTTCTCTTAAGATTTCCCTGTTAGTCTTCTCATTGAGAAAGAGTGTTTGTTAGGGTCTAACCGGAGATCTTGTTATTTCAAAATAATTTTTTGGATGTTTAGTATTGCATAACTTTGTCTTAAATGTAGCTACATGGTCAATGAGGATTCATGTAGCCGACCCCTACTTGCTTGTGATTGAGTCACAGTATTGTTGTTGTAGTGTTATATACTCCCTCCGTTTTAAAAAGAATGAAGAGGTTCAAAGTACGAGGGTGGAACCATCTGCTTTTCCGTATCAATTTGGATGTTGATTTATACATCCTTTGAAATAAAATGTATATAATTATGAGAGTTAGCTTAAATGGTTACTAGTTCTCTTCCATGTTCTGAGATGACCCTCACATACTTTCTTCCCCTTTCCCCAGTCACGTTCTTTTGTGTGCTTCCGACTTGGTTTGCAGTAATGTATCAAAGATTGTTTAAGTTGTTCGGATTATGTATTTTGAAATCAATGTATAGCCAAGGTTGAGGACACTGATCCAACACACAGTGAATTGGACTGATGGAAATTAAAGAAGTTTGTTATGTTCCGGTGTCTCTGATTTTGCTCTTTCTTATTATAGCTAAACGGATTGAAGTATGTTGTGCTAATAGTTTACTGTCCTAATTTGTTTTCTTTTTTGTGAATTAATTCTTTTGGCTTTTGATGCAGATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGC</genome_strand>
        <mrna_strand>TTAAAGCCAACTATAAAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTACA-GCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTGTACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCGAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGCTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG..................................................................................................................AGTTCAGAAGGTTTAAAGAGCAACGAGAGCTTTAAACAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487971" ref_strand="+" ref_description="SGN-E487971 [cSTE-27-I13]">
      <seq>cctcgtgccgaattcggcacgaggctctcatttcagccatcaattgaaagcttctataaaaggatttggtaccggctggactttgtgctggagcttaccagtaattgtcttttcattttagtggagaaccattagaagttggatcagctgcctctttgggagttacctttgtagccactacgattgaccttttttgatatctcccttacagctgatgataattataaacttatagttccttcatttttcgatatcttgaatggctggatctttgttaccagtgggtaaggcagtcctacgttcccgccaaccctccaactgttatgccttcaatgctgatctccagcatccaaagtcaattccaattctccctctatataagaaaagagtcaaacaaaacaatactttgaacaaatcggtgctcttaagtccattagtttgtcaataccggttaaaaccggtttctgcgcttgactcagatgttgcccgccctattgatcagagttctgaagatttaaagagtagcaagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactcaatgctcgtaaccttctagcaggaaatcaagctgcattatttgctgttccatggctggggatgttcactggattgcttggnaatttgtctttgctatcatattttattaagagagggagacggaagtggttgttgtgcaaactttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="17921" stop="19433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18222" g_stop="18667" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="502" r_length="439" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="676" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.047" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19043" g_stop="19133" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="766" r_length="90" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E487971" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18222" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTGGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGG</genome_strand>
        <mrna_strand>ATTTGGTACCGGCTGGACTTTGTGCTGGAGCTTACCAGTAATTGTCTTTTCATTTTAGTGGAGAACCATTAGAAGTTGGATCAGCTGCCTCTTTGGGAGTTA-CCTTTGTAGCCACTACGATTGACCTTTTT---T---GATATCTCCCTTACAGCTGATGATAATTATAAACTTATAGTTCCTTCATTTTTCGATATCTTGAATGGCTGGATCTTTGTTACCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCCTCCAACTGTTATGCCTTCAATGCTGATCTCCAGCATCCAAAGTCAATTCCAATTCTCCCTCTATATAAGAAAAGAGTCAAACAAAACAATACTTTGAACAAATCGGTGCTCTTAAGTCCATTAGTTTGTCAATACCGGTTAAAACCGGTTTCTGCGCTTGACTCAGATGTTGCCCGCCCTATTGATCAG..................................................................................................................AGTTCTGAAGATTTAAAGAGTAGCAAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTCAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTG.......................................................................................GGGATGTTCACTGGATTGCTTGGNAATTTGTCTTTGCTATCATATTTTATTAAG-AGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479265" ref_strand="+" ref_description="SGN-E479265 [cSTD-9-E12]">
      <seq>ttttttgctttggtacccggctggacctttgtgctggaagccttaccagtaattgtcttttcattttagtggaagaaccattaaaagttggatcagctgcctctttgggagttacctttgtagccactacgattgaccttttttgatatctcccttacagctggtgatgaatataaacttatagttccttcatttttcgatatcttgaatggctggatctttgttgccagtgggtaaggcagtcctacgttcccgccaaccctccaactgttataccttcaatgctgatctccagcatccaaagtcaattccaattctccctctatttaagaaaagagtcaaacaaaacaatactttgaacaaaatcggtgctctcaagtccattagtttgccaataccggttaaaaccggtttctgcgcttgactcagatgttccccgccttattgatcagagttctgaagatttaaagagtagcgagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactcaatgctcgtaaccttctagcaggaaatcaagctgcattatttgctgttccatggctgggggatgttcactggattgcttggtaatttgtctttgctatcatattttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="17921" stop="19395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18233" g_stop="18667" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="452" r_length="433" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="627" r_length="175" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.047" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19043" g_stop="19095" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="680" r_length="53" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E479265" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18233" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGA-CTTTGTGTTGG-AG-CATACCAGTAATTGTCTTTTCATTTTAGTTGAA-AACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAAC-AAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCT-GGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAA</genome_strand>
        <mrna_strand>GCTGGACCTTTGTGCTGGAAGCCTTACCAGTAATTGTCTTTTCATTTTAGTGGAAGAACCATTAAAAGTTGGATCAGCTGCCTCTTTGGGAGTTA-CCTTTGTAGCCACTACGATTGACCTTTTT---T---GATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTCGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCCTCCAACTGTTATACCTTCAATGCTGATCTCCAGCATCCAAAGTCAATTCCAATTCTCCCTCTATTTAAGAAAAGAGTCAAACAAAACAATACTTTGAACAAAATCGGTGCTCTCAAGTCCATTAGTTTGCCAATACCGGTTAAAACCGGTTTCTGCGCTTGACTCAGATGTTCCCCGCCTTATTGATCAG..................................................................................................................AGTTCTGAAGATTTAAAGAGTAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTCAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTGG.......................................................................................GGGATGTTCACTGGATTGCTTGGTAATTTGTCTTTGCTATCATATTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406026" ref_strand="+" ref_description="SGN-E406026 [PPI-2-O10]">
      <seq>aaaaaatcggtgctctcaagtccattagtttgccaataccggttaaaaccggtttctgcgcttgactcagatgttccccgccttattgatcagagttctgaagatttaaagagtagcgagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactcaatgctcgtaaccttctagcaggaaatcaagctgcattatttgctgttccatggctggggatgttcactggattgcttggtaatttgtctttgctatcatattttattaagaagagggagacggaagtggttgttgtgcaaactttgggcgtcgtgaccatttatattgtgatatcacaactagccatggctggatctatgcctttacctcattatgcagtcacttctgttgttattgcctgtggtcttgttgtgaacttcatgaactacttccacttgctcaatcccgtaatctggcgttattgggaggatttcattactattgctggcttatctgcgcttccccaagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="18275" stop="19638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18575" g_stop="18667" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="267" r_length="174" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.047" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19043" g_stop="19333" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="558" r_length="291" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19334" i_stop="19422" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19423" g_stop="19428" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="564" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E406026" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18575" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19333"/>
          <exon e_start="19423" e_stop="19428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTGGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGTGTCGTGACCATTTACGTTGTGATATCACAATTAGCCATGGCTGGATCTATGCCTTTGCCTCATTATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAAGTAATCACCCTCTCTTTTCTTTCATTTTCTACTCATCCATATGATGAATTTGGTTGAGATTCTTATATTTGTTTGGCATTCTGCACCAGGTCATG</genome_strand>
        <mrna_strand>AAAAAATCGGTGCTCTCAAGTCCATTAGTTTGCCAATACCGGTTAAAACCGGTTTCTGCGCTTGACTCAGATGTTCCCCGCCTTATTGATCAG..................................................................................................................AGTTCTGAAGATTTAAAGAGTAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTCAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTG.......................................................................................GGGATGTTCACTGGATTGCTTGGTAATTTGTCTTTGCTATCATATTTTATTAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGCGTCGTGACCATTTATATTGTGATATCACAACTAGCCATGGCTGGATCTATGCCTTTACCTCATTATGCAGTCACTTCTGTTGTTATTGCCTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTATTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAA.........................................................................................GTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420292" ref_strand="+" ref_description="SGN-E420292 [STM-31-C3]">
      <seq>aacaaatcggtgctctcaagtccattagtttgccaataccggttaaaaccggtttctgcgcttgactcagatgttccccgccttattgatcagagttctgaagatttaaagagtagcgagagctttaagcaatgggattcattgactgcaaaatttgcaggagctgcaaatattccgtttctcatattacaactgcctcaaataatactcaatgctcgtaaccttctagcaggaaatcaagctgcattatttgctgttccatggctggggatgttcactggattgcttggtaatttgtctttgctatcatattttattaagaagagggagacggaagtggttgttgtgcaaactttgggcgtcgtgaccatttatattgggatatcacaactagccctggctggatctatgcctttacctcattatgcaggcccttctgccgttatcgcctggggtcttggtgtgaacttcttgaactacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="18275" stop="19558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18575" g_stop="18667" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18782" g_stop="18955" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="267" r_length="174" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.047" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19043" g_stop="19258" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="483" r_length="216" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E420292" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18575" e_stop="18667"/>
          <exon e_start="18782" e_stop="18955"/>
          <exon e_start="19043" e_stop="19258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAGGTATTAATCCCCTTTCATATGCATCTAATAATGGTTGTTGGGCTCATTTTTAAAAGTAAGCTACGGTTCAGTTGGAGGTAATGAAATATGACCTAACAGTGATGTTAAATCTAGAGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTGGTATGGCATTCTGCTTTATTCTAGCTACTTATAGCTGTGGTCTTATTAATGTTGAGAGATAAATAATCTGAGATGAACATAATACAGGGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGTGTCGTGACCATTTACGTTGTGATATCACAATTAGCCATGGCTGGATCTATGCCTTTGCCTCATTATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTC</genome_strand>
        <mrna_strand>AACAAATCGGTGCTCTCAAGTCCATTAGTTTGCCAATACCGGTTAAAACCGGTTTCTGCGCTTGACTCAGATGTTCCCCGCCTTATTGATCAG..................................................................................................................AGTTCTGAAGATTTAAAGAGTAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCAAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTCAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCTGTTCCATGGCTG.......................................................................................GGGATGTTCACTGGATTGCTTGGTAATTTGTCTTTGCTATCATATTTTATTAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGCGTCGTGACCATTTATATTGGGATATCACAACTAGCCCTGGCTGGATCTATGCCTTTACCTCATTATGCAGGCCCTTCTGCCGTTATCGCCTGGGGTCTTGGTGTGAACTTCTTGAACTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321279" ref_strand="+" ref_description="SGN-E321279 [cTOB-23-E10]">
      <seq>atgcagtcacttctgttgttattgcgtgtggtcttgttgtgaacttcatgaactacttccacttgctcaatcccgtaatctggcgttactgggaggatttcattactattgctggcttatctgcgcttccccaagtcatgtggtcaactttcatcccatatgttccaaataccatcttgcctggtgctgtggcttttgttctggctatcttagctgtctttatgtctcggactgggaaacttccagagaagggcatcaaatttgtaggatcattatctggatggactgccacacttcttttcatgtggatgccagtttcacgaatgtggacaaaccttctaaatccagataatatagaaggtttatcagctctttcgatgttgcttgcaatgattgggaatggactcatgattccacgagcactctttactcgggatttgatgtggttcaccggttcaacttgggcatgcgttttttatggatggggaaaccttgtctgcttatattgctgcgaagttataagcagggaatttttcttggcttcaacaactgcctttgtagcatggctggtgttcagcttctggagagacacacaagtatatggatataattctccattgaaatcgttgaaaggactgatttctggttcataactgatcctacttgtcctagcttgttggctttggctacatatttgaaatgcaagaatggttaagtttggcatttctgctatgaatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="18900" stop="22082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19200" g_stop="19333" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="19422" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19423" g_stop="19512" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="224" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19513" i_stop="20475" i_length="963">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20476" g_stop="20577" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="326" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95">
            <donor d_prob="0.732" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20673" g_stop="20791" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="445" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21160" g_stop="21222" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="508" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21320" g_stop="21381" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="570" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21610" g_stop="21777" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="738" r_length="168" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E321279" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19200" e_stop="19333"/>
          <exon e_start="19423" e_stop="19512"/>
          <exon e_start="20476" e_stop="20577"/>
          <exon e_start="20673" e_stop="20791"/>
          <exon e_start="21160" e_stop="21222"/>
          <exon e_start="21320" e_stop="21381"/>
          <exon e_start="21610" e_stop="21777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAAGTAATCACCCTCTCTTTTCTTTCATTTTCTACTCATCCATATGATGAATTTGGTTGAGATTCTTATATTTGTTTGGCATTCTGCACCAGGTCATGTGGTCAACTTTCATCCCATATGTTCCAAATACCATCTTGCCTGGTGCTGTGGCTTTTGTTCTGGCTATCTTAGCTGTCTTTATGGTAAGCTTTGACACTGTAGCTTGTATATATGGTTACTTTTTCAAGTATAATGTTGAAATGGCCATTTCTATTATTCTGCCTTGAAGTGAACAAACTGAAGAAAAATATTGCAATGCCAGAAAAAGAAGATTATTTTTTTTTGCTCGACTTAATAAATAGAAAGCTAATTCAACATGTGCACTGGGAGAATACTCAACTCTATGTTCAAATTTATGTTGTTTCTGAACTACTGCGGCCACACAAGAAGCAAAGAAGGGTTTTTTTCTTCATTCATGACTGAGGGGAGAGAGATGATAGCTTCTCTGGCTTGGGGTGGGATAACTGGCTATCAGTCAATTCTTTTCATATTTCTTCCTTAATATTAATAAAAGGTTTCAGTTTTCTGATATAAACTGGAAGGGCAAGTCTAAAGTGGTGGCTCAACTAGGTGATTGAGCGCTTGTATTCCAGATTTGATGATTGTTTATGCTTTGTGTCTTTATGAATAAGAAGATATTCTTTTAAAGGTACAATAATGGACTGCATGTGGAAGCTCGAAATTCTGTAGGGAGGTTGTCACATCTGATTGATGTGCCTGGAAGTATGGAAGCTTCTGTTGTGGCTTACTGCGGTTTTATGTCATTTTTGCTCCATGGTGACCATAACTGGAACTTGATCTGAAAGTTTTCTGCTTGCTTTTATTGCATATATCACACGTATAAGAGAACGCTTAACTTTCATGTTACCAAATAATGTCGCAAAGGCAGTTGCTCACACATTGACTTTTCTTTACTTTTGATATTGTTAGATTACACACACTAACTCGATTAGGATTGACAATTATCTTGTGTTCATTTTCCTTGGCTCAAGAGCAAGCTAGAGACTTTTGTATGCACTTTCTGTGGGAAGATAATTTTGTTATGCTTGAGAAAATGAGAACATGGATCTGAATTATTCTGAATTTCAAGCTACTGTTATTTACAGTCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATGGTAGTTTCTATGAAGTTATTTTGGAGTAAAATTGTCAAATCTTGGTTTTTTCACAAGTTTGAGGTTCCTCATCCTGACTTATACCTTCTGTCTAGTGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTGGTATGGCATCTTACAATTGTTTTCCCTTACATTACAAACTTCCTTTTTCTACTTTAGCTGTCAAATTATATCTAGCGTTCCTCACATCACCTATTTATTTTTGCTTACAAGCATCATTGTCTACAACTTTTCTTTTTTTTTTTTGTATAATGTTCTTGTTCTCTTCCTTTACTTTTTTGTTATTGTGAACCTTCAGAACTAAATTTGTTCACATTTGGTGCAATTCAAATTTTCTTTTGTAAATTTCTTCATTAAATTTCACCTACCACCTGGTCAGCTGTTTAGTCCCGTGATGCTGAGTATTTCTTTTAGTTCTTCTTTATGGTGTTTAATTTTCCCCTCTTGATTCTCTTCTTGATTAATAATAGGTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTGGTAAGTTGTGCAGAAGTGCTGTGCTCAATAGTTTTCAAGATTTATTCAAGAATTGAGCATTGTTCTACTTAATAAATCCCTTTTGTTCTACATCCAGCTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGGGTACACTCTCACTTCATTTATTTTGTTTTAACTTGAACTTTCTGTCTCTCGCAAGTTTAACTATACTGTTTGGGCTACAACTCCATGCCTTGTTCATCGATGGCTCAGCCAGTCATCCCTCGGGGTGCCTCATGATGGCCTTTTCCCCCGTTCCCTCGCGTGTTATTGCATTTTGCTGATGGCAATATGACTCCTCTTTCATTTTCTTTTCTTTGTGGGTGAAAACAGTGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATC</genome_strand>
        <mrna_strand>ATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAA.........................................................................................GTCATGTGGTCAACTTTCATCCCATATGTTCCAAATACCATCTTGCCTGGTGCTGTGGCTTTTGTTCTGGCTATCTTAGCTGTCTTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACGAATG...............................................................................................TGGACAAACCTTCTAAATCCAGATAATATAGAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG................................................................................................................................................................................................................................................................................................................................................................................GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG.................................................................................................CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG....................................................................................................................................................................................................................................TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAAGGACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTAGCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGGTTAAGTTTGGCATTTCTGCTATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616807" ref_strand="-" ref_description="SGN-E616807 [90278]">
      <seq>attttgttaagcttgagagaatgagaacatggatctgaactattctgaatttcaagctactgttctttacagtctcggactgggaaacttccagagaagggtatcaaatttgtaggatcattatctggatggactgccactcttcttttcatgtggatgccagtttcacaaatgtggacaaaccttctaaatccagataatataaaaggtttatcagctctttcgatgctgcttgcaatgatcgggaatggactcatgattccacgagcactctttactcgggatttgatgtggttcactggttcaacttgggcatgcgttttttatggatggggaaaccttgtctgcttatattgctgcaaagttataagcagggaatttttcttggcttcaacaactgcctttgtagcatggctggtgttcagcttctggagagacacacaagtatatggttataattctccgttgaaatcgttgaaggaactgatttctggttcataactaatcctacttgtcctaccttgttggctttggctatatatttgaaatgcaagaatgttcaagtttggcatttctgctatgaatcaagtgctcttccttagaagatttggtgacagtgtttttggcaaatggggtacatcaggcaaggtgtagttgcaatgtcaaattattcagcatatggtaatgaggaaggttcctgtggttcttttacatgtaatgttaatcaataataaagctacaaatgcaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="20104" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20404" g_stop="20577" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95">
            <donor d_prob="0.732" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20673" g_stop="20791" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="293" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21160" g_stop="21222" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="356" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21320" g_stop="21381" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="418" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21610" g_stop="21952" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="753" r_length="335" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E616807" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20404" e_stop="20577"/>
          <exon e_start="20673" e_stop="20791"/>
          <exon e_start="21160" e_stop="21222"/>
          <exon e_start="21320" e_stop="21381"/>
          <exon e_start="21610" e_stop="21952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTATGCTTGAGAAAATGAGAACATGGATCTGAATTATTCTGAATTTCAAGCTACTGTTATTTACAGTCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATGGTAGTTTCTATGAAGTTATTTTGGAGTAAAATTGTCAAATCTTGGTTTTTTCACAAGTTTGAGGTTCCTCATCCTGACTTATACCTTCTGTCTAGTGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTGGTATGGCATCTTACAATTGTTTTCCCTTACATTACAAACTTCCTTTTTCTACTTTAGCTGTCAAATTATATCTAGCGTTCCTCACATCACCTATTTATTTTTGCTTACAAGCATCATTGTCTACAACTTTTCTTTTTTTTTTTTGTATAATGTTCTTGTTCTCTTCCTTTACTTTTTTGTTATTGTGAACCTTCAGAACTAAATTTGTTCACATTTGGTGCAATTCAAATTTTCTTTTGTAAATTTCTTCATTAAATTTCACCTACCACCTGGTCAGCTGTTTAGTCCCGTGATGCTGAGTATTTCTTTTAGTTCTTCTTTATGGTGTTTAATTTTCCCCTCTTGATTCTCTTCTTGATTAATAATAGGTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTGGTAAGTTGTGCAGAAGTGCTGTGCTCAATAGTTTTCAAGATTTATTCAAGAATTGAGCATTGTTCTACTTAATAAATCCCTTTTGTTCTACATCCAGCTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGGGTACACTCTCACTTCATTTATTTTGTTTTAACTTGAACTTTCTGTCTCTCGCAAGTTTAACTATACTGTTTGGGCTACAACTCCATGCCTTGTTCATCGATGGCTCAGCCAGTCATCCCTCGGGGTGCCTCATGATGGCCTTTTCCCCCGTTCCCTCGCGTGTTATTGCATTTTGCTGATGGCAATATGACTCCTCTTTCATTTTCTTTTCTTTGTGGGTGAAAACAGTGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTA</genome_strand>
        <mrna_strand>ATTTTGTTAAGCTTGAGAGAATGAGAACATGGATCTGAACTATTCTGAATTTCAAGCTACTGTTCTTTACAGTCTCGGACTGGGAAACTTCCAGAGAAGGGTATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACTCTTCTTTTCATGTGGATGCCAGTTTCACAAATG...............................................................................................TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGCTGCTTGCAATGATCGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG................................................................................................................................................................................................................................................................................................................................................................................GTTCACTGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG.................................................................................................CTGCAAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG....................................................................................................................................................................................................................................TGTTCAGCTTCTGGAGAGACACACAAGTATATGGTTATAATTCTCCGTTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTAATCCTACTTGTCCTACCTTGTTGGCTTTGGCTATATATTTGAAATGCAAGAATGTTCAAGTTTGGCATTTCTGCTATGAATCAAGTGCTCTTCCTTAGAAGATTTGGTGACAGTGTTTTTGGCAA------AT-GGGGTACATCAGGCAAGGTGTAGTTGCAATGTCAAATTATTCAGCATATGG-TAATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATGTTAATCAATAATAAAGCTACAAATGCAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374158" ref_strand="+" ref_description="SGN-E374158 [TUS-33-N21](-)">
      <seq>aaagggcatcaatttgtagggatcattatctggatggactgccacacttcttttcatgtggatgccagtttcacaaatgtggacaaaccttctaaatccagataatataaaaggtttatcagctctttcgatgttgcttgcaatgattgggaatggactcatgattccacgagcactctttactcgggatttgatgtggttcaccggttcaacttgggcatgcgttttttatggatggggaaaccttgtctgcttatattgctgcgaagttataagcagggaatttttcttggcttcaacaactgcctttgtagcatggctggtgttcagcttctggagagacacacaagtatatggatataattctccattgaaatcattgaaggaactgatttctggttcataactgatcctacttgtcctaccttgttggctttggctacatatttgaaatgcaagaatgttaaagtttggcatttctgctatgaatcaagtcctcttctttagaagatttggtgaaagtgcttttggcaaatgtttttgggggtacatcaggcaaggtctagttgcaatgtcaaattattcagcatatggttatgaggaaggttcctgtggttcttttacatgtaatattaatcaataataaagctacatttgcaatgttagtgcaaatatatttgttgtattacattttggaacaaattcttaataaatataaagtttaaaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="20200" stop="22319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20499" g_stop="20577" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20673" g_stop="20791" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="198" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21160" g_stop="21222" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="261" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21320" g_stop="21381" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="323" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21610" g_stop="22025" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="738" r_length="415" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E374158" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20499" e_stop="20577"/>
          <exon e_start="20673" e_stop="20791"/>
          <exon e_start="21160" e_stop="21222"/>
          <exon e_start="21320" e_stop="21381"/>
          <exon e_start="21610" e_stop="22025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGCATCAAATTTGTA-GGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATGGTAGTTTCTATGAAGTTATTTTGGAGTAAAATTGTCAAATCTTGGTTTTTTCACAAGTTTGAGGTTCCTCATCCTGACTTATACCTTCTGTCTAGTGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTGGTATGGCATCTTACAATTGTTTTCCCTTACATTACAAACTTCCTTTTTCTACTTTAGCTGTCAAATTATATCTAGCGTTCCTCACATCACCTATTTATTTTTGCTTACAAGCATCATTGTCTACAACTTTTCTTTTTTTTTTTTGTATAATGTTCTTGTTCTCTTCCTTTACTTTTTTGTTATTGTGAACCTTCAGAACTAAATTTGTTCACATTTGGTGCAATTCAAATTTTCTTTTGTAAATTTCTTCATTAAATTTCACCTACCACCTGGTCAGCTGTTTAGTCCCGTGATGCTGAGTATTTCTTTTAGTTCTTCTTTATGGTGTTTAATTTTCCCCTCTTGATTCTCTTCTTGATTAATAATAGGTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTGGTAAGTTGTGCAGAAGTGCTGTGCTCAATAGTTTTCAAGATTTATTCAAGAATTGAGCATTGTTCTACTTAATAAATCCCTTTTGTTCTACATCCAGCTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGGGTACACTCTCACTTCATTTATTTTGTTTTAACTTGAACTTTCTGTCTCTCGCAAGTTTAACTATACTGTTTGGGCTACAACTCCATGCCTTGTTCATCGATGGCTCAGCCAGTCATCCCTCGGGGTGCCTCATGATGGCCTTTTCCCCCGTTCCCTCGCGTGTTATTGCATTTTGCTGATGGCAATATGACTCCTCTTTCATTTTCTTTTCTTTGTGGGTGAAAACAGTGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGGACAAATTCTTAATAAATATAAAGTTTAAAACCATATTTGCA</genome_strand>
        <mrna_strand>AAAGGGCATC-AATTTGTAGGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATG...............................................................................................TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG................................................................................................................................................................................................................................................................................................................................................................................GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG.................................................................................................CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG....................................................................................................................................................................................................................................TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCATTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAAGTCCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAATGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGG-TTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGAACAAATTCTTAATAAATATAAAGTTTAAAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420293" ref_strand="+" ref_description="SGN-E420293 [STM-31-C3]">
      <seq>atatgggttagctttttttttattaagattgtcccaaaatgaaatacaacaaatatatttaacattgcatttgtagctttattattgattaacattacatgtaaaagaaccacaggaaccttcctcattaccatatgctgaataatttgacattgcaactacaccttgcctgatgtaccccatttgccaaaaacactgtcaccaaatcttctaaggaagagcacttgattcatagcagaaatgccaaacttgaacattcttgcatttcaaatatatagccaaagccaacaaggtaggacaagtaggattagttatgaaccagaaatcagttccttcaacgatttcaacggagaattataaccatatacttgtgtgtctctccagaagctgaacaccagccatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="22320" stop="21309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22020" g_stop="21608" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E420293" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22020" e_stop="21608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGTTTTAAACTTTATATTTATTAAGAATTTGTCCCAAAATGTAATACAACAAATATATTTGCACTAACATTGCAAATGTAGCTTTATTATTGATTAATATTACATGTAAAAGAACCACAGGAACCTTCCTCATAAACCATATGCTGAATAATTTGACATTGCAACTAGACCTTGCCTGATGTACCCCCAAAAACACTTGCCAAAAGCACTTTCACCAAATCTTCTAAAGAAGAGCAATTGATTCATAGCAGAAATGCCAAACTTTAACATTCTTGCATTTCAAATATGTAGCCAAAGCCAACAAGGTAGGACAAGTAGGATCAGTTATGAACCAGAAATCAGTTCCTTCAACGATTTCAATGGAGAATTATATCCATATACTTGTGTGTCTCTCCAGAAGCTGAACACT</genome_strand>
        <mrna_strand>ATATGGGT-T-AGCTTTTTTTTTATTAAG-A-TTGTCCCAAAATGAAATACAACAAATATA-TT----TAACATTGCATTTGTAGCTTTATTATTGATTAACATTACATGTAAAAGAACCACAGGAACCTTCCTCAT-TACCATATGCTGAATAATTTGACATTGCAACTACACCTTGCCTGATGTA--CCC-----CATTTGCCAAAAACACTGTCACCAAATCTTCTAAGGAAGAGCACTTGATTCATAGCAGAAATGCCAAACTTGAACATTCTTGCATTTCAAATATATAGCCAAAGCCAACAAGGTAGGACAAGTAGGATTAGTTATGAACCAGAAATCAGTTCCTTCAACGATTTCAACGGAGAATTATAACCATATACTTGTGTGTCTCTCCAGAAGCTGAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717049" ref_strand="+" ref_description="SGN-E717049 [FB18DB07]">
      <seq>tcaaaactcatcccatgaacctgttgaatgagaggacactcaagggcaccttctttggtaactacaagcccaaaactgatctcccatctgtggtggccaagtacatgaataaggaactagagctggagaagttcatcacccatcaagtaccattttcagagatcaacaaagcatttgacattatgctgaaaggggaaggcctccgttgcatgatcactatgggacgttgaaatatgctaaatagggaaaataggacagtatattacctagtaatatagagcttgaatgtaataaaacaaacggtattttaatgggtaaaataatgttaaaagtagagtttggaggcaaagtatatgttttctaaaaggcctcctgagtttgctcaacatattgtgtaataatatttgcatattttgaaagactttttgagttttggtcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="23114" stop="21989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22814" g_stop="22702" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22701" i_stop="22615" i_length="87">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22614" g_stop="22293" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="435" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="456"/>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E717049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22814" e_stop="22702"/>
          <exon e_start="22614" e_stop="22293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCATCCCATGAACCTGTTGAATGAGAGGACACTCAAGGGCACCTTCTTTGGTAACTACAAGCCCAAAACTGATCTCCCATCTGTGGTGGCCAAGTACATGAATAAGGTAATCCTTGCACCTATTTTCGATATATACTCAAAACGACTATCCGTGCATAGAAGTTGAACTTCATCCCGGAGTAAATTTTTTCAGGAACTAGAGCTGGAGAAGTTCATCACCCATCAAGTACCATTTTCAGAGATCAACAAAGCATTTGACATTATGCTGAAAGGGGAAGGCCTCCGTTGCATGATCACTATGGGACGTTGAAATATGCTAAATAGGGAAAATAGGACAGTATATTACCTAGTAATATAGAGCTTGAATGTAATAAAACAAACGGTATTTTAATGGGTAAAATAATGTTAAAAGTAGAGTTTGGAGGCAAAGTATATGTTTTCTAAAAGGCCTCCTGAGTTTGCTCAACATATTGTGTAATAATATTTGCATATTTTGAAAGACTTTTTGAGTTTTG</genome_strand>
        <mrna_strand>TCAAAACTCATCCCATGAACCTGTTGAATGAGAGGACACTCAAGGGCACCTTCTTTGGTAACTACAAGCCCAAAACTGATCTCCCATCTGTGGTGGCCAAGTACATGAATAAG.......................................................................................GAACTAGAGCTGGAGAAGTTCATCACCCATCAAGTACCATTTTCAGAGATCAACAAAGCATTTGACATTATGCTGAAAGGGGAAGGCCTCCGTTGCATGATCACTATGGGACGTTGAAATATGCTAAATAGGGAAAATAGGACAGTATATTACCTAGTAATATAGAGCTTGAATGTAATAAAACAAACGGTATTTTAATGGGTAAAATAATGTTAAAAGTAGAGTTTGGAGGCAAAGTATATGTTTTCTAAAAGGCCTCCTGAGTTTGCTCAACATATTGTGTAATAATATTTGCATATTTTGAAAGACTTTTTGAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706172" ref_strand="+" ref_description="SGN-E706172 [FA29AH06]">
      <seq>atcaacaacaatgaatactgctggtcaggttattcgctgcaaagctgcggttgcatgggaagctggaaaacctttggtaattgaagaagtggatgttgcacctccacagaaacatgaagttcgtctcaagattctcttcacctcattgtgccacactgatgtttacttctgggaagctaagggacaaacacctttgtttcctcgaattttcggacatgaagctggaggaattgtggagagtgtaggtgaaggtgttacagatcttcaaccaggagatcatgttcttcctgtgtttaccggagaatgtcagcaatgccgtcactgtaaatcatcagaaagcaacatgtgtgaactcctaagaataaatacagacaggggagttatgattagtgatggtcaaacaagattttccaaggatggaaagccgatataccactttgttggaacttccacttttagtgaatacactgttgctcattctggttgcgtcaccaagatcgatccacaggcaccacttgacaaagtttgtgtcctgagttgcggaatatcaacaggacttggtgcgactctgaatgttgccaaacctactagaggttcttatgtggctatttttggtttgggagctgttggccttgctgctgctgaaggagctaggctagctggggcttctaggatcattggtattgatttgaatcccagcagattcaatgatgccaagaaattcggtgtcacagagtttgtgaatccaaaagatcatgataagcctgttcaggaggtgatcgctgagatgaccantggaggtgttgaccggagtgtcgagtgtactggaaatgttaacgctatgatctctgcttttgaatgtgttcatgatgggtggggtgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="25632" stop="22653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25332" g_stop="25289" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25288" i_stop="25113" i_length="176">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25112" g_stop="24976" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="181" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24975" i_stop="24065" i_length="911">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24064" g_stop="24018" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="228" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24017" i_stop="23938" i_length="80">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23937" g_stop="23612" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="554" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23611" i_stop="23533" i_length="79">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23532" g_stop="23450" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="637" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23449" i_stop="23364" i_length="86">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23363" g_stop="23288" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23287" i_stop="23207" i_length="81">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23206" g_stop="23145" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="775" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23144" i_stop="23050" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23049" g_stop="22954" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="871" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="22953" i_stop="22864" i_length="90">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22863" g_stop="22850" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="885" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E706172" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25332" e_stop="25289"/>
          <exon e_start="25112" e_stop="24976"/>
          <exon e_start="24064" e_stop="24018"/>
          <exon e_start="23937" e_stop="23612"/>
          <exon e_start="23532" e_stop="23450"/>
          <exon e_start="23363" e_stop="23288"/>
          <exon e_start="23206" e_stop="23145"/>
          <exon e_start="23049" e_stop="22954"/>
          <exon e_start="22863" e_stop="22850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACAATGAATACTGCTGGTCAGGTTATTCGCTGCAAAGGTGATCCTTTTTTTTTTTTTTTGGCTATATCAAGGATCTGTGTAGTTGTGATTTTTGGGGATTTGGTTGTTTGTGATTTGGAAAAAAATATGATCTTTTTGTGAGTGAAAGTAAAATTTCTTAGATTTTTTCAAAATCTGTGGCTCTTTTATGGTCTTGTGATTGTTTTTGTGTAGCTGCGGTTGCATGGGAAGCTGGAAAACCTTTGGTAATTGAAGAAGTGGATGTTGCACCTCCACAGAAACATGAAGTTCGTCTCAAGATTCTCTTCACCTCATTGTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGTCTTTTTCTTCAAACTTTTGTGTGTTTTGAAATCATTATATCAACTTTTTTGAGTGTTTAGTGCTAGTTCAATTTGTAAGGATTTGATTCTCTGTACAAATATAGAGATATTATTTTTTGATGACAAGGGAAATCCACAGCAGCTATCCTATGCTAGCTCGCAAATCACGTAAGAGAGCTAACCTGCACTAGGCAAGCCCGGTGCGACAAGCCGGACCCAAAAGGCAAATCCATTACTTTCTCGGTGCGACGAGCTCTCGATGCGACGAGCTCGACCCAGAAGGCAAACCCCTCACTTTCCCTGGCAAGGGGTTTCACACTTGAGACCTCCAATATGGAAGTCCCAGTCCAAGCCCAAACCCCTCACTTTCCCTGGCAAGGGGTTTCACACTTGAGACCTCCAATATGGAAGTCCCAGTCCAAGCCCAAACCACTGGCCCACCCCGAAGGGTAGTTCACACTTGAGACCTCCATGTCCCAAGCCCAAACCACTGGCCCACCCTGAAGGGGAAAATGGCCCACCCTGAAGGGTAGAATGGAGAGATATCTAACCACTATGTAGTGAATTACCTAACTCTGTCAACTTTGGGTTGTTAATTTTTAATTTTCTGTGTTGATCATGCTTATTGGTGTTAGAAGCACAAAGGGTTCTGTTTATTAGATAGAAAGTTTGGTATAATGACTATACTTGTTGTTACCTATGTGATCCCAATAAAAAATGTATGTTTTTTATGAGGTTTTTGATATGTAAAGTTGTTATCTTTTGTTAAATATCACTTGGTCTGTTCTGCTTATACCTTTTTTTCGCAATCATGGTGAATATTGTAGCATTCGTCTTGACCCTTTTGCATATTTTTCCATCTTGATGGTTGGTGTAGTTATTGATTTGCAATCCTCTGTTTTGCTGTAGGGACAAACACCTTTGTTTCCTCGAATTTTCGGACATGAAGCTGGAGGGTATGGAGTAGTTGATTTTCTTATGTTATTTTCGAACTTATTCAGTATGTATAAGAGTGTTTACATTTGTGTGGTTGTAGAATTGTGGAGAGTGTAGGTGAAGGTGTTACAGATCTTCAACCAGGAGATCATGTTCTTCCTGTGTTTACCGGAGAATGTCAGCAATGCCGTCACTGTAAATCATCAGAAAGCAACATGTGTGAACTCCTAAGAATAAATACAGACAGGGGAGTTATGATTAGTGATGGTCAAACAAGATTTTCCAAGGATGGAAAGCCGATATACCACTTTGTTGGAACTTCCACTTTTAGTGAATACACTGTTGCTCATTCTGGTTGCGTCACCAAGATCGATCCACAGGCACCACTTGACAAAGTTTGTGTCCTGAGTTGCGGAATATCAACAGGTTTTATTCAACTTTAGTCATTTGAGTAAGTTTTTTATAATTGGATATTGTCTTATGGCGGAGTTCATCTATTCTGAAGGACTTGGTGCGACTCTGAATGTTGCCAAACCTACTAGAGGTTCTTATGTGGCTATTTTTGGTTTGGGAGCTGTTGGCCTTGCTGTGAGTGTACATTCCACCCTCTGCTTTTCGATACAATGTCCGTTCGTTGTCATAATGAGAATGTTGTGTCGGTCATCTTGTATTAGGCTGCTGAAGGAGCTAGGCTAGCTGGGGCTTCTAGGATCATTGGTATTGATTTGAATCCCAGCAGATTCAATGATGGTGAGTGCATTTGATTATGGATGACCAAGAATGTAATGTCAAAATTTGTTGATTTTCTGTTTTTCTTTTGAATTTCGACAGCCAAGAAATTCGGTGTCACAGAGTTTGTGAATCCAAAAGATCATGATAAGCCTGTTCAGGAGGTTTGTTTGTCTCTGGCATGTCCATCTTGTTTCCACTGCACATAACATATCATGTGTAGCAACTTCTTGTCTGAGGTTTGCGCGATGATTTTCAGGTGATCGCTGAGATGACCAATGGAGGTGTTGACCGGAGTGTCGAGTGTACTGGAAATGTTAACGCTATGATCTCTGCTTTTGAATGTGTTCATGATGTAACAATTCTCATCTGTTTTTAAGTCTTTTTTCCATCTCGTTCCACTCAAATGTAAGGGTCACAATCTTATGACATACTTGATTTACAGGGTTGGGGTGTGGC</genome_strand>
        <mrna_strand>ATCAACAACAATGAATACTGCTGGTCAGGTTATTCGCTGCAAAG................................................................................................................................................................................CTGCGGTTGCATGGGAAGCTGGAAAACCTTTGGTAATTGAAGAAGTGGATGTTGCACCTCCACAGAAACATGAAGTTCGTCTCAAGATTCTCTTCACCTCATTGTGCCACACTGATGTTTACTTCTGGGAAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAACACCTTTGTTTCCTCGAATTTTCGGACATGAAGCTGGAGG................................................................................AATTGTGGAGAGTGTAGGTGAAGGTGTTACAGATCTTCAACCAGGAGATCATGTTCTTCCTGTGTTTACCGGAGAATGTCAGCAATGCCGTCACTGTAAATCATCAGAAAGCAACATGTGTGAACTCCTAAGAATAAATACAGACAGGGGAGTTATGATTAGTGATGGTCAAACAAGATTTTCCAAGGATGGAAAGCCGATATACCACTTTGTTGGAACTTCCACTTTTAGTGAATACACTGTTGCTCATTCTGGTTGCGTCACCAAGATCGATCCACAGGCACCACTTGACAAAGTTTGTGTCCTGAGTTGCGGAATATCAACAG...............................................................................GACTTGGTGCGACTCTGAATGTTGCCAAACCTACTAGAGGTTCTTATGTGGCTATTTTTGGTTTGGGAGCTGTTGGCCTTGCT......................................................................................GCTGCTGAAGGAGCTAGGCTAGCTGGGGCTTCTAGGATCATTGGTATTGATTTGAATCCCAGCAGATTCAATGATG.................................................................................CCAAGAAATTCGGTGTCACAGAGTTTGTGAATCCAAAAGATCATGATAAGCCTGTTCAGGAG...............................................................................................GTGATCGCTGAGATGACCANTGGAGGTGTTGACCGGAGTGTCGAGTGTACTGGAAATGTTAACGCTATGATCTCTGCTTTTGAATGTGTTCATGAT..........................................................................................GGGTGGGGTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472731" ref_strand="+" ref_description="SGN-E472731 [cSTB-29-P19]">
      <seq>gatggcatgaggacgccaatgcgtgacagagcatggaatccaatgagtccacctagggataattgggaagagggaaaccctgcttcctgggggtcaagtccgcaatatcagccatctagtcctcgttcaagggcgtatgaagcacctactcctggttctggttggactaatactcctagtggtaattacagtgatgctgggaccccaagagacaatggttctgcatatgctaatgctccaagtccttacttgccatcaactcctggtggacaaccaccaatgacaccaagttcagcatatatacctggtactcctggcgggcagccaatgactcctggaagtggtgggctggatatgatgtcacctataggaggtggggatacagaaggtccttggctcttacctgatatcttggtcaatgtacgaaagtccaatgatgatactgtcatcggagttgtccatgaggtgctcgcggatggttcctgtagtgttggtcttggatcaagcggcaatggtgacactatcattgcgcacccaactgaaattgatataattgtaccaaagaagtctgataaaatcaaaatcatgggtggtccccaacgtggtgcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="35198" stop="29709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34898" g_stop="34843" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34842" i_stop="34362" i_length="481">
            <donor d_prob="0.515" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34361" g_stop="34304" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="111" r_length="56" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34303" i_stop="32338" i_length="1966">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32337" g_stop="32220" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="229" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32219" i_stop="32122" i_length="98">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32121" g_stop="31978" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="373" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31977" i_stop="31412" i_length="566">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31411" g_stop="31311" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="474" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31310" i_stop="30147" i_length="1164">
            <donor d_prob="0.945" d_score="0.94"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30146" g_stop="30009" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="612" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E472731" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34898" e_stop="34843"/>
          <exon e_start="34361" e_stop="34304"/>
          <exon e_start="32337" e_stop="32220"/>
          <exon e_start="32121" e_stop="31978"/>
          <exon e_start="31411" e_stop="31311"/>
          <exon e_start="30146" e_stop="30009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGTCCAACTAGGTATGTTGTTTCTCTGGCGAAAATAAGCCCAATGGCTTAAGGTTTTGAAAATAGAATGAAGGCCATGTAATCTTCCTAGTTCTTATTTAGACCTGAAACTAATCACGAACACATATGAAGACCAAAGATCAGCAATCACTGTATCTAGTAAATGCACAAAAGCTTTCAAGTTTAAGGCTATAATTTTAGAACTTCCAGCCACACAGAGGAGAAATTTACATGTGACTTGTAAATTTTCCCTCTTTGTATGACTATAAGTTATAGAATTATCATCTTGAACTTGAAAGCTTTTCTGTGCATTTGCTAGATATAATGAGTGCTGATTTTTTATCTTCATGTGTGTTAGTGATTACACTTTAAGTGGCATGCTCTTGCGTTAGATTGATCTTGCTATTTTAGTTTGTTGCTTTTACTGCCATAGATTTGGTGAATTGCAATTCTATTCTCTTTATATTAAATGGTTGCAATGGCACAGTGACAGGGGGGGTGATTGGGAAGATGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATATCAGGTTTTCACGCTTTCCACTTTATTTCTATATAAACTGTACTTTTCTCTTAAATGTGATTTGGTGTATGTGCGTTGCACGTGTAAATCGTATGTAGTGGAAATGACCTTAGATAGGAGGACACAAACAAGGTCGCATTGCTAGTATTTTGCTTTGTTATTCTTTCACTTCCATTACTTCTTTTTTGGACTACTTTGGATTGTTTTTCCTTGAGCCGAAGGCCTATTGGGAACCACACCTCTCTACCTCTGAGGATAGAAAGTTAGGGTCAAGTCTGCATACTTCTTACCCTGTGTAGACCCCATTTTTTGGTGACTACACTTGCTGTTGATATTATAATTTCTCCTGACAGTGTAAGCTATCCCATAAAGTTACAGTGCTCTCTCTAGTCCCACTAGCCTCTAATTTTTCTCCATCTATTTGGCCTTAATTTTTTGATAATGACTCTATTATCTCCTCCATTTTTTGATTACGAAAAACATAATACATTGGCCTTCCATATGTGGATATATTTTTTTTTGTTAGCATCTTTTTCGATTGTTGATTCAACCCTCTGACATTCCATGATATAATGCTGACTTTGGGTCAGCAGATCTGGACCCAAATTCTTTTTATTGAATAAGAGGGCTGTTGGCTGAATAATGTTCCCCCATGGCATGGTCACGTGGATATTCCAACCTAGGAAGGCCTCCACCTCTTCTGGACACCCCACGTGCCCCATCTAGCTATATCACCTTGAAATGCTACCCTGTACTATATGTGCCTTCTATTATCCGCTGGTCTGATGTTCTCTCTCTTCTGGCAGCTCTGATACTGATTCTCACAGGAACTTCACACCAAATTGATACTGATTCTCACAGGAGCTTCACACCAAATTTGAATCTTAGAGACAATACCTTCACTTTCCACCTTCACCACTGTGGGACTTCGTCGCCGTCACCCCTAACCATTAGTCGTACCCCATTTTGAGTGATTTCTCAACTCCATCTCTTCTTCAGTTTGAATCTAGCCACCACAGAGGTCTCGGATCTCCTTGAAAACCTTTTGGACCATTACCGAAGGCTAAGACCTATCAATCAGACTTGATTCACCTCTTCATGTCTTGGAGCAGATCTCACCGTCGGCGTCCACCATTGCAGTTTGAGTTTGTGTTTTTTCCGGTGCCAATCACCTCTCATTACATTCTCTGTTTCCAACTTAGAAGAGAACTTGAACATGAACAAATTTTGGCCCATTTCATAAATATTGATTCCAGATGACTGCTGCTTATGCATCTTCGTATTTCTGACTAAGAGGTATCAGAAAAGTTTTCTTAGAGAGAGAACATAGAACTTCCATCTTTTCACAAAGTTACCCTTAACTTTCGATGCCTAATTTAGAAATTCAAATAGCTAGAGCATCGTTTTCGTGTTGAACGAAGTTCTTCTAAATCAAGGCATTATGTTCCATTCTTTTTGAAAATTATTTATATTCCAATTTAATTGTCGCTCTAACTCCTTTTACACCCTTTTCATTAATTTTTTTAGAAACAATAAATATAAGAGTTCATTAATTTCATTAATATAAGGTTTTAGTTGGTGTTAAAGAATGACAAAAGTCTCACACCGGTGGTTAAAGAATGATCCAAGTCCCATAAGGCTTAGACAATCCTCCTCCCTTTGAGCTAGCTTTTTGGGTGTGAGATGGGCCTAAGACCCGATTTCACTTGGTATCAGAGCCAGGTTGCATCTCACCCGATGTTGGGCTCCTAAAATCAAAATTGCCCATCCGCCAGATGCTAAGCACTGGGCGTAAGGTGGGGTGTTAAAAAATGACAAAAGTCCCAGATCGATGGTTAATGAGATGGGTAGACTTCTTATAAGGCTTGGACAGTCCTCCCTTTGAGCTAACTTTTGTGGTTGGGGGGGGGGGATTATCATGCATTTTTCTCTTCACAAAGAAAGATCATCATGCTTTGTTCATTTTTCAGCCATCTAGTCCTCGTTCAAGGGCGTATGAAGCACCTACTCCTGGTTCTGGTTGGACTAATACACCTAGCGGTAATTACAGTGATGCTGGTACCCCAAGAGACAATGGTTCTGCATATGGTAAACCTAAAGTCTCATTTATAGGAGTAAAAGCTGCATTTTTTTTCTTTCGATCCTTGTATGGAGTATATAATGCCATTTTTCTTTGTTCCATGCAGCTAATGCTCCAAGTCCTTACTTGCCATCAACTCCTGGTGGACAACCACCAATGACACCAAGTTCAGCATATATACCTGGTACTCCTGGTGGGCAGCCAATGACTCCTGGAAGTGGTGGGCTGGATATGATGTCACCTATAGGAGGTGTGTCCCTTGTTCGGCACAATAATTTGTGTCTTTTGGAATGGCAAATCACTTAGAATATATATATTACTGATAAGTTAAAATGAGAAGCATTTTACGCTATTGAGCTGGTAAACTTGTGACTGCTGCAGATTTTATATATTTTACCCATAATATCTTGTCTAGCAATAGAAAACATTTTATTGAGATCAGATGGTCTCTTGTTTCCACTTTGCCATGTGATGAACTGGTGGTCCTTGTTATTCATATTCGTGCATTTTGATTTACAGAACATTGCAGTATTAAAATTGTCATTTAGCTTACTGTGTTCAATTTTTGTATTTTCTCAATGGTTTGTGCTGATTATAATGTAGAAATTGCTCTAATGTTAATCAAAATTGCAGTGTGAGGAATGCAAATTTGTCCGAACAGTTGCGTCTTTACTTGCACCATGATGATTTAGACATAGAGGAGAATGACCTTTAATGTTGTTCATCATTGCAAATTCATTTTATTATTTTATCTAGAAGAGCCGTTGGCAATACTATTTTCAACATCCAGTATAGCTGACAACTTTGAAATTGCAGGTGGGGATACAGAAGGTCCTTGGCTCTTGCCTGATATCTTGGTCAATGTACGGAAGTCCAATGATGATACTGTCATCGGAGTTGTCCATGAGGTGTTAGCGGTATGATATCCTGCACTAATTTATCTACTCCATAGTGGGAATTCGCTTCACATACGACCTGATTGTGCATGTGATAAATATTAGTTCTCCCTCCGTCCCATTTATGTGATGGTGTTCGGATTTCGAGTCAAACAAATTATTCTTTGACCATAATTTTTTTTGTCTTCTAATTATCTCGAATTATTAATTATTACAACTTATAAATCCTTTAATATAGTTTTCGAACATATAATTTTGTTTCAAAAAACTAATAGATACTGTCCAATTATATGTTTGTTTGAATCTCGAAAAGCGGAAAATGTCACATAAATTGGGATATAGGGATCATTACATTTTAGAGGTTTTTATTTTTATTTTTAAAATTGTACATTTAGAGAATGTTGAGAAGTGCATCGAAACCTCTTAACCACTTCCTGGGAAGATGCATTGCACATGTAAATACGACATTATACTAGTGATCCTAGAAGTGGGGGTCCGGGAGAGTTGAGGTGTATGCATAGATCCTTGATTTAAGAAAAGCGTTTCCAAAAATATTGTAGAAAGGACAACTACCAACGACAAAAAATAACCCAAGTAACAACAATAGTAATATAATATAATAATAGAACAATGATACTGATAAATGGACGAGGGAGCATGGCTCTAAGCTAGAAGAGCAATGCACATGTGAATATTAGTTCGAAAGGGATTATTGAATATTCAAGTTATCCCAAATAAGGGTTGTGAAAATGACGGAGTTAGACAAATGAATGTTTTTTCTCTAATTTTGCTGGATTAGATCTTGAACTTTGTAATTTCATTTTTACTTTATACTAAAAATATTCATCCTATTTGTTCCAATTGTCGTGCTCTCGGTACTGGGACGTTTCGAAATGATTGATATCTTTCTAGTTCTACAACTTTAAACTATCCACTCTTTAACTTTGATGTGATGCTCTGTTATTGTTATTTAACCACATTTTTTCAGAACGTTCTTCCATCATCAGTAGTGTGTATAGAAGCCATTAAAGTGAATGTGTGTAACGTATATAAAACTGTGCTAATGGCTCTATTTAATCAGAGGTTGATTCTTCTGCTTTTTTGTATCTGGCTGTGAACTTTCTTTTCAAGGGAATAGTTTCATTGGAAAATTAACCAGTATTCTCTAACTTGCTTGTGGAGCAGGATGGTTCCTGTAGTGTTGGTCTTGGATCAAGCGGCAATGGTGACACTATCATTGCGCACCCAACTGAAATTGATATAATTGTACCAAAGAAGTCTGATAAAATCAAGATAATGGGTGGTCCTCAACGTGGTGCAACC</genome_strand>
        <mrna_strand>GATGGCATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGTCCACCTA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................--GGGATAATTGGGAAGAGGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTAGTCCTCGTTCAAGGGCGTATGAAGCACCTACTCCTGGTTCTGGTTGGACTAATACTCCTAGTGGTAATTACAGTGATGCTGGGACCCCAAGAGACAATGGTTCTGCATATG..................................................................................................CTAATGCTCCAAGTCCTTACTTGCCATCAACTCCTGGTGGACAACCACCAATGACACCAAGTTCAGCATATATACCTGGTACTCCTGGCGGGCAGCCAATGACTCCTGGAAGTGGTGGGCTGGATATGATGTCACCTATAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGATACAGAAGGTCCTTGGCTCTTACCTGATATCTTGGTCAATGTACGAAAGTCCAATGATGATACTGTCATCGGAGTTGTCCATGAGGTGCTCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTTCCTGTAGTGTTGGTCTTGGATCAAGCGGCAATGGTGACACTATCATTGCGCACCCAACTGAAATTGATATAATTGTACCAAAGAAGTCTGATAAAATCAAAATCATGGGTGGTCCCCAACGTGGTGCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585420" ref_strand="+" ref_description="SGN-E585420 [67880]">
      <seq>gccgttcagtgaaccatctagatatggtttgggaagtgaaacaccatcacatccttcaaggactccactgcacccatttatgacacctatgagagatcctggagcaacacctatccatgatggcatgaggacgccaatgcgtgacagagcatggaatccaatgagtccacctagggataattgggaagagggaaaccctgcttcctgggggtcaagtccgcaatatcagccatctagtcctcgttcaagggcgtatgaagcacctactcctggttctggttggactaatactcctagtggtaattacagtgatgctgggaccccaagagacaatggttctgcatatgctaatgctccaagtccttacttgccatcaactcctggtggacaancaccaatgacaccaagttcagcatatatacctggtactcctggcgggcagccaatgactcctggaagtggtgggctggatatgatgtcacctataggaggtggggatacagaaggtccttggctcttacctgatatcttggtcaatgtacgaaagtccaatgatgatactgtcatcggagttgtccatgaggtgctcgcggatggttcctgtagtgttggtcttgggatcaagcggcaattggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="35407" stop="29803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35183" g_stop="35175" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35174" i_stop="35102" i_length="73">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35101" g_stop="35007" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="104" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35006" i_stop="34913" i_length="94">
            <donor d_prob="0.504" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34912" g_stop="34843" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="173" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34842" i_stop="34362" i_length="481">
            <donor d_prob="0.515" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34361" g_stop="34304" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="229" r_length="56" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34303" i_stop="32338" i_length="1966">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32337" g_stop="32220" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="347" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32219" i_stop="32122" i_length="98">
            <donor d_prob="0.856" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32121" g_stop="31978" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="491" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31977" i_stop="31412" i_length="566">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31411" g_stop="31311" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="592" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31310" i_stop="30147" i_length="1164">
            <donor d_prob="0.945" d_score="0.94"/>
            <acceptor a_prob="0.932" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="30146" g_stop="30103" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="638" r_length="46" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E585420" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35183" e_stop="35175"/>
          <exon e_start="35101" e_stop="35007"/>
          <exon e_start="34912" e_stop="34843"/>
          <exon e_start="34361" e_stop="34304"/>
          <exon e_start="32337" e_stop="32220"/>
          <exon e_start="32121" e_stop="31978"/>
          <exon e_start="31411" e_stop="31311"/>
          <exon e_start="30146" e_stop="30103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCAGGTAAAGTATATGTCCATTCTAAAATTTGGGTTATTTTTCATGTTCATCGTCTAACAATTTTTTCTGTGTGCAGGGAACCATCTAGATATGGTTTGGGAAGTGAAACACCATCACATCCTTCAAGGACTCCACTGCACCCATTTATGACACCTATGAGAGATCCTGGAGGTCCATTATTCTGCTGCCCTGTTCCAATAGTGTTTTTCATTCTTTTCCCTCCCAGCTATTTGACTTTAGCTCTTCTCGTTATTTTCTTCTATAGCAACACCTATCCATGATGGCATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGTCCAACTAGGTATGTTGTTTCTCTGGCGAAAATAAGCCCAATGGCTTAAGGTTTTGAAAATAGAATGAAGGCCATGTAATCTTCCTAGTTCTTATTTAGACCTGAAACTAATCACGAACACATATGAAGACCAAAGATCAGCAATCACTGTATCTAGTAAATGCACAAAAGCTTTCAAGTTTAAGGCTATAATTTTAGAACTTCCAGCCACACAGAGGAGAAATTTACATGTGACTTGTAAATTTTCCCTCTTTGTATGACTATAAGTTATAGAATTATCATCTTGAACTTGAAAGCTTTTCTGTGCATTTGCTAGATATAATGAGTGCTGATTTTTTATCTTCATGTGTGTTAGTGATTACACTTTAAGTGGCATGCTCTTGCGTTAGATTGATCTTGCTATTTTAGTTTGTTGCTTTTACTGCCATAGATTTGGTGAATTGCAATTCTATTCTCTTTATATTAAATGGTTGCAATGGCACAGTGACAGGGGGGGTGATTGGGAAGATGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATATCAGGTTTTCACGCTTTCCACTTTATTTCTATATAAACTGTACTTTTCTCTTAAATGTGATTTGGTGTATGTGCGTTGCACGTGTAAATCGTATGTAGTGGAAATGACCTTAGATAGGAGGACACAAACAAGGTCGCATTGCTAGTATTTTGCTTTGTTATTCTTTCACTTCCATTACTTCTTTTTTGGACTACTTTGGATTGTTTTTCCTTGAGCCGAAGGCCTATTGGGAACCACACCTCTCTACCTCTGAGGATAGAAAGTTAGGGTCAAGTCTGCATACTTCTTACCCTGTGTAGACCCCATTTTTTGGTGACTACACTTGCTGTTGATATTATAATTTCTCCTGACAGTGTAAGCTATCCCATAAAGTTACAGTGCTCTCTCTAGTCCCACTAGCCTCTAATTTTTCTCCATCTATTTGGCCTTAATTTTTTGATAATGACTCTATTATCTCCTCCATTTTTTGATTACGAAAAACATAATACATTGGCCTTCCATATGTGGATATATTTTTTTTTGTTAGCATCTTTTTCGATTGTTGATTCAACCCTCTGACATTCCATGATATAATGCTGACTTTGGGTCAGCAGATCTGGACCCAAATTCTTTTTATTGAATAAGAGGGCTGTTGGCTGAATAATGTTCCCCCATGGCATGGTCACGTGGATATTCCAACCTAGGAAGGCCTCCACCTCTTCTGGACACCCCACGTGCCCCATCTAGCTATATCACCTTGAAATGCTACCCTGTACTATATGTGCCTTCTATTATCCGCTGGTCTGATGTTCTCTCTCTTCTGGCAGCTCTGATACTGATTCTCACAGGAACTTCACACCAAATTGATACTGATTCTCACAGGAGCTTCACACCAAATTTGAATCTTAGAGACAATACCTTCACTTTCCACCTTCACCACTGTGGGACTTCGTCGCCGTCACCCCTAACCATTAGTCGTACCCCATTTTGAGTGATTTCTCAACTCCATCTCTTCTTCAGTTTGAATCTAGCCACCACAGAGGTCTCGGATCTCCTTGAAAACCTTTTGGACCATTACCGAAGGCTAAGACCTATCAATCAGACTTGATTCACCTCTTCATGTCTTGGAGCAGATCTCACCGTCGGCGTCCACCATTGCAGTTTGAGTTTGTGTTTTTTCCGGTGCCAATCACCTCTCATTACATTCTCTGTTTCCAACTTAGAAGAGAACTTGAACATGAACAAATTTTGGCCCATTTCATAAATATTGATTCCAGATGACTGCTGCTTATGCATCTTCGTATTTCTGACTAAGAGGTATCAGAAAAGTTTTCTTAGAGAGAGAACATAGAACTTCCATCTTTTCACAAAGTTACCCTTAACTTTCGATGCCTAATTTAGAAATTCAAATAGCTAGAGCATCGTTTTCGTGTTGAACGAAGTTCTTCTAAATCAAGGCATTATGTTCCATTCTTTTTGAAAATTATTTATATTCCAATTTAATTGTCGCTCTAACTCCTTTTACACCCTTTTCATTAATTTTTTTAGAAACAATAAATATAAGAGTTCATTAATTTCATTAATATAAGGTTTTAGTTGGTGTTAAAGAATGACAAAAGTCTCACACCGGTGGTTAAAGAATGATCCAAGTCCCATAAGGCTTAGACAATCCTCCTCCCTTTGAGCTAGCTTTTTGGGTGTGAGATGGGCCTAAGACCCGATTTCACTTGGTATCAGAGCCAGGTTGCATCTCACCCGATGTTGGGCTCCTAAAATCAAAATTGCCCATCCGCCAGATGCTAAGCACTGGGCGTAAGGTGGGGTGTTAAAAAATGACAAAAGTCCCAGATCGATGGTTAATGAGATGGGTAGACTTCTTATAAGGCTTGGACAGTCCTCCCTTTGAGCTAACTTTTGTGGTTGGGGGGGGGGGATTATCATGCATTTTTCTCTTCACAAAGAAAGATCATCATGCTTTGTTCATTTTTCAGCCATCTAGTCCTCGTTCAAGGGCGTATGAAGCACCTACTCCTGGTTCTGGTTGGACTAATACACCTAGCGGTAATTACAGTGATGCTGGTACCCCAAGAGACAATGGTTCTGCATATGGTAAACCTAAAGTCTCATTTATAGGAGTAAAAGCTGCATTTTTTTTCTTTCGATCCTTGTATGGAGTATATAATGCCATTTTTCTTTGTTCCATGCAGCTAATGCTCCAAGTCCTTACTTGCCATCAACTCCTGGTGGACAACCACCAATGACACCAAGTTCAGCATATATACCTGGTACTCCTGGTGGGCAGCCAATGACTCCTGGAAGTGGTGGGCTGGATATGATGTCACCTATAGGAGGTGTGTCCCTTGTTCGGCACAATAATTTGTGTCTTTTGGAATGGCAAATCACTTAGAATATATATATTACTGATAAGTTAAAATGAGAAGCATTTTACGCTATTGAGCTGGTAAACTTGTGACTGCTGCAGATTTTATATATTTTACCCATAATATCTTGTCTAGCAATAGAAAACATTTTATTGAGATCAGATGGTCTCTTGTTTCCACTTTGCCATGTGATGAACTGGTGGTCCTTGTTATTCATATTCGTGCATTTTGATTTACAGAACATTGCAGTATTAAAATTGTCATTTAGCTTACTGTGTTCAATTTTTGTATTTTCTCAATGGTTTGTGCTGATTATAATGTAGAAATTGCTCTAATGTTAATCAAAATTGCAGTGTGAGGAATGCAAATTTGTCCGAACAGTTGCGTCTTTACTTGCACCATGATGATTTAGACATAGAGGAGAATGACCTTTAATGTTGTTCATCATTGCAAATTCATTTTATTATTTTATCTAGAAGAGCCGTTGGCAATACTATTTTCAACATCCAGTATAGCTGACAACTTTGAAATTGCAGGTGGGGATACAGAAGGTCCTTGGCTCTTGCCTGATATCTTGGTCAATGTACGGAAGTCCAATGATGATACTGTCATCGGAGTTGTCCATGAGGTGTTAGCGGTATGATATCCTGCACTAATTTATCTACTCCATAGTGGGAATTCGCTTCACATACGACCTGATTGTGCATGTGATAAATATTAGTTCTCCCTCCGTCCCATTTATGTGATGGTGTTCGGATTTCGAGTCAAACAAATTATTCTTTGACCATAATTTTTTTTGTCTTCTAATTATCTCGAATTATTAATTATTACAACTTATAAATCCTTTAATATAGTTTTCGAACATATAATTTTGTTTCAAAAAACTAATAGATACTGTCCAATTATATGTTTGTTTGAATCTCGAAAAGCGGAAAATGTCACATAAATTGGGATATAGGGATCATTACATTTTAGAGGTTTTTATTTTTATTTTTAAAATTGTACATTTAGAGAATGTTGAGAAGTGCATCGAAACCTCTTAACCACTTCCTGGGAAGATGCATTGCACATGTAAATACGACATTATACTAGTGATCCTAGAAGTGGGGGTCCGGGAGAGTTGAGGTGTATGCATAGATCCTTGATTTAAGAAAAGCGTTTCCAAAAATATTGTAGAAAGGACAACTACCAACGACAAAAAATAACCCAAGTAACAACAATAGTAATATAATATAATAATAGAACAATGATACTGATAAATGGACGAGGGAGCATGGCTCTAAGCTAGAAGAGCAATGCACATGTGAATATTAGTTCGAAAGGGATTATTGAATATTCAAGTTATCCCAAATAAGGGTTGTGAAAATGACGGAGTTAGACAAATGAATGTTTTTTCTCTAATTTTGCTGGATTAGATCTTGAACTTTGTAATTTCATTTTTACTTTATACTAAAAATATTCATCCTATTTGTTCCAATTGTCGTGCTCTCGGTACTGGGACGTTTCGAAATGATTGATATCTTTCTAGTTCTACAACTTTAAACTATCCACTCTTTAACTTTGATGTGATGCTCTGTTATTGTTATTTAACCACATTTTTTCAGAACGTTCTTCCATCATCAGTAGTGTGTATAGAAGCCATTAAAGTGAATGTGTGTAACGTATATAAAACTGTGCTAATGGCTCTATTTAATCAGAGGTTGATTCTTCTGCTTTTTTGTATCTGGCTGTGAACTTTCTTTTCAAGGGAATAGTTTCATTGGAAAATTAACCAGTATTCTCTAACTTGCTTGTGGAGCAGGATGGTTCCTGTAGTGTTGGTCTT-GGATCAAGCGGCAA-TGGTGA</genome_strand>
        <mrna_strand>GCCGTTCAG.........................................................................TGAACCATCTAGATATGGTTTGGGAAGTGAAACACCATCACATCCTTCAAGGACTCCACTGCACCCATTTATGACACCTATGAGAGATCCTGGAG..............................................................................................CAACACCTATCCATGATGGCATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGTCCACCTA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................--GGGATAATTGGGAAGAGGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTAGTCCTCGTTCAAGGGCGTATGAAGCACCTACTCCTGGTTCTGGTTGGACTAATACTCCTAGTGGTAATTACAGTGATGCTGGGACCCCAAGAGACAATGGTTCTGCATATG..................................................................................................CTAATGCTCCAAGTCCTTACTTGCCATCAACTCCTGGTGGACAANCACCAATGACACCAAGTTCAGCATATATACCTGGTACTCCTGGCGGGCAGCCAATGACTCCTGGAAGTGGTGGGCTGGATATGATGTCACCTATAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGATACAGAAGGTCCTTGGCTCTTACCTGATATCTTGGTCAATGTACGAAAGTCCAATGATGATACTGTCATCGGAGTTGTCCATGAGGTGCTCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTTCCTGTAGTGTTGGTCTTGGGATCAAGCGGCAATTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338988" ref_strand="+" ref_description="SGN-E338988 [cTOF-6-A6]">
      <seq>ttaatcccaaggattgatttacaggctcttgcgaacaagttggaagggagggaagctccaaagaaaaaggcatttattcctccaccacgctttatgaatatcgatgaagctagagagatgaacctacgtgtggaacgtaggcgagacccgatgtcaggtgactattttgagaatattggagttatgatgttcaaagatggtttcttgtataagacagtgtcaatgaaatcaatcaggaccctgaatatacagccaacttttgatgaacttgagaaattccggcaaactggtgagggtggggatggtgatatggctagtctatctactttgtttgcaaataggaaaaaaggtcattttatgaagggtgaccgcgttattgtggtgaagggggatctcagaaacttgaaaggccatgttgagaaagtcgaagaagatactgttcatatcagaccaaatcagaaggaccttcctttgactttggcttttagtgacaaagagctatgcaagtactttgatcttggaaatcacgtgaaagtagtatctggttcatctgaaggtgcaaccggtatggttgtctctgttcagggacatgtggttaacctggtatctgatacaacaaaggagcttctccgtgtatttgccgataatgttgttgagagttctgaagtaacatctggtctcactcgtattggggaatatgagctccatgatcttgtaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="-" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="38209" stop="36341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37909" g_stop="37868" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37867" i_stop="37593" i_length="275">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37592" g_stop="37522" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="113" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37521" i_stop="37434" i_length="88">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37433" g_stop="37073" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="474" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37072" i_stop="36979" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36978" g_stop="36826" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="627" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36825" i_stop="36736" i_length="90">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36735" g_stop="36641" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="722" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="-" ref_id="SGN-E338988" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37909" e_stop="37868"/>
          <exon e_start="37592" e_stop="37522"/>
          <exon e_start="37433" e_stop="37073"/>
          <exon e_start="36978" e_stop="36826"/>
          <exon e_start="36735" e_stop="36641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCCCAAGGATTGATTTACAGGCTCTTGCGAACAAGTTGGTATGTTCACTCTTATACTTGTTAGTTGATAGGTTCTGTATTCTTGAAATACATGAGCATCAAATGTTTATGTTGTAAGAACCTATTGAATTCCTTATCTCATTAAAGGGATTGTTGAAACCTGGCTAACTTATACATCTTTGTAGATCCACAGCATTATATAAAGCTATTTTTTTTTGGCAATTATTAATATTGTGCTCACCTATTCGAAACAAATCTTTCTTGTCGAAAGAAACGGTTGACGTTCCTTCTTGCATGTTGTATTGCTTTTGTAGGAAGGGAGGGAAGCTCCAAAGAAAAAGGCATTTATTCCTCCACCACGCTTTATGAATATCGATGAAGCTAGGTAATTGTTCCTTGGTGTCTCTAGTTGCAATAAGAGCACAAATAATGGTCTACATGGAATTGCTTAATCTGTTTCTCATTGATTGCAGAGAGATGAACCTACGTGTGGAACGTAGGCGAGACCCGATGTCAGGTGACTATTTTGAGAATATTGGAGGTATGATGTTCAAAGATGGTTTCTTGTATAAGACAGTGTCAATGAAATCAATCAGGACCCTGAATATACAGCCAACTTTTGATGAACTTGAGAAATTCCGGCAAACTGGTGAGGGTGGGGATGGTGATATGGCTAGTCTATCTACTTTGTTTGCAAATAGGAAAAAAGGTCATTTTATGAAGGGTGACCGCGTTATTGTGGTGAAGGGGGATCTCAGAAACTTGAAAGGCCATGTTGAGAAAGTCGAAGAAGATACTGTTCATATCAGACCAAATCAGAAGGACCTTCCTTTGGTAATATTTCCCTTCTTTAAATACTTCTTGTTTCATGAATCAAGTGTCTCAGAATGAGTAGTACTGTCATTTTATTTACTTATTTTGGGAGCAGACTTTGGCTTTTAGTGACAAAGAGCTATGCAAGTACTTTGATCTTGGAAATCACGTGAAAGTAGTATCTGGTTCATCTGAAGGTGCAACCGGTATGGTTGTCTCTGTTCAGGGACATGTGGTTAACCTGGTATCTGATACAACAAAGGAGCTTGTAAGTTGAGCATACATGGTAATTTGAGATCTCTAATCTAAAGTCTTCAGACCAATGGTGATTCAACTTTTTTTATTTTTTATACTGCAGCTCCGTGTATTTGCCGATAATGTTGTTGAGAGTTCTGAAGTAACATCTGGTCTCACTCGTATTGGGGAATATGAGCTCCATGATCTTGTAATTCT</genome_strand>
        <mrna_strand>TTAATCCCAAGGATTGATTTACAGGCTCTTGCGAACAAGTTG...................................................................................................................................................................................................................................................................................GAAGGGAGGGAAGCTCCAAAGAAAAAGGCATTTATTCCTCCACCACGCTTTATGAATATCGATGAAGCTAG........................................................................................AGAGATGAACCTACGTGTGGAACGTAGGCGAGACCCGATGTCAGGTGACTATTTTGAGAATATTGGAGTTATGATGTTCAAAGATGGTTTCTTGTATAAGACAGTGTCAATGAAATCAATCAGGACCCTGAATATACAGCCAACTTTTGATGAACTTGAGAAATTCCGGCAAACTGGTGAGGGTGGGGATGGTGATATGGCTAGTCTATCTACTTTGTTTGCAAATAGGAAAAAAGGTCATTTTATGAAGGGTGACCGCGTTATTGTGGTGAAGGGGGATCTCAGAAACTTGAAAGGCCATGTTGAGAAAGTCGAAGAAGATACTGTTCATATCAGACCAAATCAGAAGGACCTTCCTTTG..............................................................................................ACTTTGGCTTTTAGTGACAAAGAGCTATGCAAGTACTTTGATCTTGGAAATCACGTGAAAGTAGTATCTGGTTCATCTGAAGGTGCAACCGGTATGGTTGTCTCTGTTCAGGGACATGTGGTTAACCTGGTATCTGATACAACAAAGGAGCTT..........................................................................................CTCCGTGTATTTGCCGATAATGTTGTTGAGAGTTCTGAAGTAACATCTGGTCTCACTCGTATTGGGGAATATGAGCTCCATGATCTTGTAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554763" ref_strand="+" ref_description="SGN-E554763 [cTSC-5-F2]">
      <seq>aaaaaaaaaaaaatgaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaatttccggggggggggccgggacccccttgcccccgtgggggggtgattttaattttcgggggcgcctttttaaaaaacatcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataggatgcttttacagtcaaggttccggactagaaagaaagaagaggcagaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggtggactgaatgataaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatttcaggttatccggtggccgcaaccacatatttgtcttcccaagtggtgctggagctcatttatttaaatcgtgggcgacatacttgaatcggtctataatacttacccctgagggggatcgcacagataaaagagacactagtgccttcaatacatggaaagatattatcatacctggaaacattgatgatgggatgactactcagggctctaggatagttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="7331" stop="58255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52271" g_stop="52361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.516"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52362" i_stop="52863" i_length="502">
            <donor d_prob="0.000" d_score="0.40"/>
            <acceptor a_prob="0.825" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52864" g_stop="52904" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="128" r_length="38" r_score="0.537"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52905" i_stop="53730" i_length="826">
            <donor d_prob="0.605" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53731" g_stop="53994" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="392" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="539" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57083" g_stop="57147" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="604" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57569" g_stop="57638" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="674" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57639" i_stop="58028" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58029" g_stop="58139" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="785" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E554763" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52271" e_stop="52361"/>
          <exon e_start="52864" e_stop="52904"/>
          <exon e_start="53731" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57147"/>
          <exon e_start="57569" e_stop="57638"/>
          <exon e_start="58029" e_stop="58139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAACAAATAGTAATAAAAGGTATATTTAAAAAGAAGTAAAAATGTAAGGGAAAAAATTCAGTTTACCTTTTCCTCGTTTAAAAAAATAACTAATTTTATCCAAATTCAAATCCTCACACTCAAGATCGTGCACGCTTTAACTCAAACCCTCACACTCAAGATCATGCACGCTTTAACTTCAGCACACTCATCATATCCTTTGGTTGATGTGTGCTTACGAATAGAATATATCAAATTTTCAATATTTTATATGTACATATAAATTTTCATCGCATTATTGGACGTTCAAGCACTCTATATGTGGGTTCGCTCTTGTACACTCACGTGACATAATAATAATTTTTTGGTTATAAATCTGTAATGTCAAAGTACTTTGCTAATCATAGATTGTGCTCTAGTATTATTGATAAAATCCATCTCTTTTTGTAATCGCCTTCACATCCTTACTTTTCTTATTGCATTCGTTCCTTTCTATTCATATATTATGAATTATTTCAGTGTACACCAAAAAGTTGAGCTTTTAACCTTTATCTTTTGGTTTTTATCACAACTTCAATAATCTAGTTCTTCCAATCACTTGTTACTAGTGATGTTTTCTTTGAGCCAAGAGCAGATTTTAGTCCACAAGGTACATCGAACAAAAAAGTGAACTCCAATTTCAAAACAAGCATTGTGAAAATCACAATTAGATTCAACATTCACGCCATTTTCAATAGCCTATACTTCATAAGTAATCTATTTTACATGTGAATACAACCACACGAAGAATATACCTATAGGCTTAGCCTCATTTATGTATATTATGACCTTCCATGGTATTTTTCCTATAACCTTCAATAATTATAGATAAACTTGTCGTATAATGTTGTGCTCTACCTTAAAAGGTAGTTCTATTGTTTTTCAAATTATATGAGTTGCAATAATTGTATTGATCATCCAACTTGCTTGTTGCGACAAATGGTTAGCCTTTGACACGATAGTAATTAAAAGATGACAAGTGTCATTGACGTTCAACTTTAATAAGCTATCAATAATTTATATCGATTTTTTTTTTATAATTGTATCATTAATTCATATTAATTTACACCATTTCATATTACTTATCCTCGTTGACGATAAAACACTTGACACTAGTTATCCTTACAAAAATTCAAATAAATAAAATATTTTCTAGTTAATCATATTATTGATATTTTAAAACTTTAATTTAATAATTATTTAATACTAACAATAATATAAAAATTGAAGTCTTTTAATTTGCATTTCCATCTTCTTCTTCATTGCGTTTACACTTAAACACTCACCTCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAGGTATAAGTTGTCATATGGAGATATTTTGAACTCATGAATTGGAAAGTTGACCCAATGATGTATGGAGTTTGTAAGAGCTGGTAAATGAATATGACAGGCATTGCTAAGTTCTGCATGGGCTTAGATGTAGATATAAAGCCACAACCTCAGAGTTGCAATCTGATAAAAATATCGCCTAATGGTAGTTGTGCTGCATTTGTCAAAACTGCCATTTGAAAAAGGCAGGAATATTTACCTTATGAACTGGGATGTAGATGTGAAGCACAACTTAAATGTTGCAGTCAGATAAAATATTGATCATCCATTGTTACCTGTGCTAAATGCTGTTGCAAATAGACGTGCAACTAAATTTCTCTAAGTAGCATTTTCAATTGAAAGAATAATACTTTTTCTTATGTGTGCTACTTTTGCTGAACTACAGTGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAGGTAAGGTCTTACAAACTGTTAGTCTATAATCCTTACCCATCATATGTAGTCGTAGAAAATGTCTCATGGGTTGCTGTGCTGTCATTCACTATGCACTGATCTAACTTTTTCTGTGAATCTGTCTCTCATGGAATGTCAACTCACTCTCACTGTCTGTATGTTGTTTCCATGGTCTGTTCGTTGTGACAATTTAATATATCATGCACAGAACCTGCCTAAGAAAATAAATTATAATATTTCTGTCCAGTGACATGAGATTATTAGCAGGTTCATCAAGTTATTCTCTATGTTTGTTGTCTTAACACGCTTGCATCTATCATGCCTGTTATCTTCAATAAGTTAATCTCATTCAGCCTTCCATGTTGAGGAATATCATTACATCTAATTCAGGGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCATGGCTCTAGGATAGTTGAG</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAT-GAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAATTTCCGGGGGGGGGGCCGGGACCCCCTTGCCCCCGTGGGGGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT-TTTAATTTTCG-GGGGCGC-CTTTTTAAAAAACATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTACAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGATAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCAGGGCTCTAGGATAGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245401" ref_strand="+" ref_description="SGN-E245401 [cLEF-53-D20]">
      <seq>ttacacttaaacactcacctcactgctctgttctgctcagtaggggcaacaacaatgggggggatacacagcagcaagaccagacctttcccttcacaccacacagtaaccccgtgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataagatgcttttacagtcaaggttccggactagaaagaaagaagaggcagaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggtggactgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53263" stop="57160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53563" g_stop="53994" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56860" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="550" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E245401" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53563" e_stop="53994"/>
          <exon e_start="56743" e_stop="56860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTTAAACACTCACCTCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATG</genome_strand>
        <mrna_strand>TTACACTTAAACACTCACCTCACTGCTCTGTTCTGCTCAGTAGGGGCAACAACAATGGGGGGGATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAAGATGCTTTTACAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312195" ref_strand="+" ref_description="SGN-E312195 [cTOA-11-N21]">
      <seq>ctcacctcactgctctgttctgctcagtagcaacaacaacaatggcaacgatacacagcagcaagaccagacctttcccttcacaccacacagtaaccccgtgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataggatgcttttacagtcaaggttccggactagaaagaaagaagaggcagaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggtggactgaatgataaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53276" stop="57169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53576" g_stop="53994" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56869" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="546" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E312195" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53576" e_stop="53994"/>
          <exon e_start="56743" e_stop="56869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCTCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGA</genome_strand>
        <mrna_strand>CTCACCTCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACGATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTACAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGATAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579158" ref_strand="+" ref_description="SGN-E579158 [86283]">
      <seq>tcactgctctgttctgctcagtagcagcaacaatggcaagcatacacagcagcaagaccagacctttcgcttctcaccacaccgtaaccccatgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttttcaacccctacttctggacaatacagatccaagaacgacgtcgtacggttctccgattccggtgggtccatcttttggccacaacgtgggtatgggacccatctttccctgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatgggaagatttcgcctgattcttgcgttaaaggacaatggggtactcaggttaagatacataggatgcttttgcagtcaaggttccggaccagaaagaaagaagaggcggaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggcggactgaatgacaaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatttcaggttatccggtggccgcaaccacatatttgtcttcccaagtggtgctggagctcatttatttaaatcgtgggcgacatacttgaatcggtctaataatacttacccctgagggagatcggccagataaagagatactagcgctttaatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53288" stop="57946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53582" g_stop="53994" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="557" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57083" g_stop="57147" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="622" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57569" g_stop="57638" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="693" r_length="71" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E579158" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53582" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57147"/>
          <exon e_start="57569" e_stop="57638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAGGTATAAGTTGTCATATGGAGATATTTTGAACTCATGAATTGGAAAGTTGACCCAATGATGTATGGAGTTTGTAAGAGCTGGTAAATGAATATGACAGGCATTGCTAAGTTCTGCATGGGCTTAGATGTAGATATAAAGCCACAACCTCAGAGTTGCAATCTGATAAAAATATCGCCTAATGGTAGTTGTGCTGCATTTGTCAAAACTGCCATTTGAAAAAGGCAGGAATATTTACCTTATGAACTGGGATGTAGATGTGAAGCACAACTTAAATGTTGCAGTCAGATAAAATATTGATCATCCATTGTTACCTGTGCTAAATGCTGTTGCAAATAGACGTGCAACTAAATTTCTCTAAGTAGCATTTTCAATTGAAAGAATAATACTTTTTCTTATGTGTGCTACTTTTGCTGAACTACAGTGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCT-ATAATACTTACCCCTGAG</genome_strand>
        <mrna_strand>TCACTGCTCTGTTCTGCTCAGTAG---CAGCAACAATGGCAAGCATACACAGCAGCAAGACCAGACCTTTCGCTTCTCACCACACCGTAACCCCATGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTTTCAACCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGGTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGTGGGTATGGGACCCATCTTTCCCTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATGGGAAGATTTCGCCTGATTCTTGCGTTAAAGGACAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACCAGAAAGAAAGAAGAGGCGGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGCGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTAATAATACTTACCCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574535" ref_strand="+" ref_description="SGN-E574535 [34018]">
      <seq>ctgctctgttctgctcagtagcagcaacaatggcaagcatacacagcagcaagagcagacctttcgcttctcaccacaccgtaaccccatgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttttcaagccccgtacttctggacaatacagatccaagaacgacgtcgtacggttctccgattccggtgggtccatcttttggccacaacgtgggtatgggacccatctttccctgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatgggaagatttcgcctgattcttgcgttaaaggacaatggggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53290" stop="54291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53585" g_stop="53991" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E574535" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53585" e_stop="53991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAA-TCCC-TACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACT</genome_strand>
        <mrna_strand>CTGCTCTGTTCTGCTCAGTAG---CAGCAACAATGGCAAGCATACACAGCAGCAAGAGCAGACCTTTCGCTTCTCACCACACCGTAACCCCATGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTTTCAAGCCCCGTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGGTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGTGGGTATGGGACCCATCTTTCCCTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATGGGAAGATTTCGCCTGATTCTTGCGTTAAAGGACAATGGGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555809" ref_strand="+" ref_description="SGN-E555809 [cTSD-1-H23]">
      <seq>caacaacaacaatggcaacgatacacagcagcaagaccagacctttcccttcacaccacacagtaaccccgtgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataggatgcttttacagtcaaggttccggactagaaagaaagaagaggcagaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggtggactgaatgataaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatttcaggttatccggtggccgcaaccacatatttgtcttcccaagtggtgctggagctcatttatttaaatcgtgggcgacatacttgaatcggtctataatacttacccctgagggggatcgcacagataaaagagacactagtgccttcaatacatggaaagatattatcatacctggaaacattgatgatgggatgactactcatggctctaggatagttgagtctttgcctttgtcaaagaggaaacatctagcgaattatttaggtcgagcacaaggaaaggtgggtcgccttcggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="58255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53994" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="536" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57083" g_stop="57147" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="601" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57569" g_stop="57638" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="671" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57639" i_stop="58028" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58029" g_stop="58217" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="860" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E555809" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57147"/>
          <exon e_start="57569" e_stop="57638"/>
          <exon e_start="58029" e_stop="58217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAGGTATAAGTTGTCATATGGAGATATTTTGAACTCATGAATTGGAAAGTTGACCCAATGATGTATGGAGTTTGTAAGAGCTGGTAAATGAATATGACAGGCATTGCTAAGTTCTGCATGGGCTTAGATGTAGATATAAAGCCACAACCTCAGAGTTGCAATCTGATAAAAATATCGCCTAATGGTAGTTGTGCTGCATTTGTCAAAACTGCCATTTGAAAAAGGCAGGAATATTTACCTTATGAACTGGGATGTAGATGTGAAGCACAACTTAAATGTTGCAGTCAGATAAAATATTGATCATCCATTGTTACCTGTGCTAAATGCTGTTGCAAATAGACGTGCAACTAAATTTCTCTAAGTAGCATTTTCAATTGAAAGAATAATACTTTTTCTTATGTGTGCTACTTTTGCTGAACTACAGTGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAGGTAAGGTCTTACAAACTGTTAGTCTATAATCCTTACCCATCATATGTAGTCGTAGAAAATGTCTCATGGGTTGCTGTGCTGTCATTCACTATGCACTGATCTAACTTTTTCTGTGAATCTGTCTCTCATGGAATGTCAACTCACTCTCACTGTCTGTATGTTGTTTCCATGGTCTGTTCGTTGTGACAATTTAATATATCATGCACAGAACCTGCCTAAGAAAATAAATTATAATATTTCTGTCCAGTGACATGAGATTATTAGCAGGTTCATCAAGTTATTCTCTATGTTTGTTGTCTTAACACGCTTGCATCTATCATGCCTGTTATCTTCAATAAGTTAATCTCATTCAGCCTTCCATGTTGAGGAATATCATTACATCTAATTCAGGGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCATGGCTCTAGGATAGTTGAGTCTTTGCCTTTGTCAAAGAGGAAACATCTAGCGAATTATTTAGGTCGAGCACAAGGAAAGGTGGGTCGCCTTCGGTTG</genome_strand>
        <mrna_strand>CAACAACAACAATGGCAACGATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTACAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGATAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCATGGCTCTAGGATAGTTGAGTCTTTGCCTTTGTCAAAGAGGAAACATCTAGCGAATTATTTAGGTCGAGCACAAGGAAAGGTGGGTCGCCTTCGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556740" ref_strand="+" ref_description="SGN-E556740 [cTSD-4-H14]">
      <seq>caacaacaacaatggcaacgatacacagcagcaagaccagacctttcccttcacaccacacagtaaccccgtgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataggatgcttttacagtcaaggttccggactagaaagaaagaagaggcagaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggtggactgaatgataaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatttcaggttatccggtggccgcaaccacatatttgtcttcccaagtggtgctggagctcatttatttaaatcgtgggcgacatacttgaatcggtctataatacttacccctgagggggatcgcacagataaaagagacactagtgccttcaatacatggaaagatattatcatacctggaaacattgatgatgggatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53306" stop="58255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53606" g_stop="53994" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="536" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57083" g_stop="57147" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="601" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57569" g_stop="57638" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="671" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57639" i_stop="58028" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58029" g_stop="58116" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="759" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E556740" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53606" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57147"/>
          <exon e_start="57569" e_stop="57638"/>
          <exon e_start="58029" e_stop="58116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAGGTATAAGTTGTCATATGGAGATATTTTGAACTCATGAATTGGAAAGTTGACCCAATGATGTATGGAGTTTGTAAGAGCTGGTAAATGAATATGACAGGCATTGCTAAGTTCTGCATGGGCTTAGATGTAGATATAAAGCCACAACCTCAGAGTTGCAATCTGATAAAAATATCGCCTAATGGTAGTTGTGCTGCATTTGTCAAAACTGCCATTTGAAAAAGGCAGGAATATTTACCTTATGAACTGGGATGTAGATGTGAAGCACAACTTAAATGTTGCAGTCAGATAAAATATTGATCATCCATTGTTACCTGTGCTAAATGCTGTTGCAAATAGACGTGCAACTAAATTTCTCTAAGTAGCATTTTCAATTGAAAGAATAATACTTTTTCTTATGTGTGCTACTTTTGCTGAACTACAGTGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAGGTAAGGTCTTACAAACTGTTAGTCTATAATCCTTACCCATCATATGTAGTCGTAGAAAATGTCTCATGGGTTGCTGTGCTGTCATTCACTATGCACTGATCTAACTTTTTCTGTGAATCTGTCTCTCATGGAATGTCAACTCACTCTCACTGTCTGTATGTTGTTTCCATGGTCTGTTCGTTGTGACAATTTAATATATCATGCACAGAACCTGCCTAAGAAAATAAATTATAATATTTCTGTCCAGTGACATGAGATTATTAGCAGGTTCATCAAGTTATTCTCTATGTTTGTTGTCTTAACACGCTTGCATCTATCATGCCTGTTATCTTCAATAAGTTAATCTCATTCAGCCTTCCATGTTGAGGAATATCATTACATCTAATTCAGGGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTA</genome_strand>
        <mrna_strand>CAACAACAACAATGGCAACGATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTACAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGATAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447590" ref_strand="+" ref_description="SGN-E447590 [cSTA-27-F1]">
      <seq>gcaacaatggcaagcatacacagcagcaagaccagacctttcgcttctcaccacaccgtaaccccatgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttttcaacccctacttctggacaatacagatccaagaacgacgtcgtacggttctccgattccggtgggtccatcttttggccacaacgtgggtatgggacccatctttccctgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatgggaagatttcgcctgattcttgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53312" stop="54273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53611" g_stop="53973" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E447590" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53611" e_stop="53973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTT</genome_strand>
        <mrna_strand>GCAACAATGGCAAGCATACACAGCAGCAAGACCAGACCTTTCGCTTCTCACCACACCGTAACCCCATGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTTTCAACCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGGTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGTGGGTATGGGACCCATCTTTCCCTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATGGGAAGATTTCGCCTGATTCTTGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341035" ref_strand="+" ref_description="SGN-E341035 [cTOE-22-A9]">
      <seq>acaacaatggcaacgatacacagcagcaagaccagacctttcccttcacaccacacagtaaccccgtgcactcgcacccaccagatcggcgctctagctctcgtcatcatcactttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttctcaatccctacttctggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53311" stop="54228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53611" g_stop="53928" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E341035" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53611" e_stop="53928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACAC</genome_strand>
        <mrna_strand>ACAACAATGGCAACGATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418406" ref_strand="+" ref_description="SGN-E418406 [STM-27-M18]">
      <seq>ctttcttcctcaccagaatcttcgaccagtcactcaattcctcttccttttcaacccctacttctggacaatacagatccaagaacgacgtcgtacggttctccgattccggtgggtccatcttttggccacaacgtgggtatgggacccatctttccctgaagatttatgtgtatgatgagaatgaaattgatggggtaaaacacttgttgtatggccgtgatgggaagatttcgcctgattcttgcgttaaaggacaatgggggactcaggttaagatacataagatgcttttgcagtcaaggttccggaccacaaagaaagaagaggcggaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggcggactgaatgacaaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatttcaggttattcggtggccgcaaccacatatttgtcttcccaagtggtgctggagctcatttatttaaatagtgggcgacatacttgaatcgggctataatacttaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53423" stop="57933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53723" g_stop="53994" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="419" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57083" g_stop="57147" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="484" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421">
            <donor d_prob="0.827" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57569" g_stop="57633" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="549" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E418406" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53723" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57147"/>
          <exon e_start="57569" e_stop="57633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAGGTATAAGTTGTCATATGGAGATATTTTGAACTCATGAATTGGAAAGTTGACCCAATGATGTATGGAGTTTGTAAGAGCTGGTAAATGAATATGACAGGCATTGCTAAGTTCTGCATGGGCTTAGATGTAGATATAAAGCCACAACCTCAGAGTTGCAATCTGATAAAAATATCGCCTAATGGTAGTTGTGCTGCATTTGTCAAAACTGCCATTTGAAAAAGGCAGGAATATTTACCTTATGAACTGGGATGTAGATGTGAAGCACAACTTAAATGTTGCAGTCAGATAAAATATTGATCATCCATTGTTACCTGTGCTAAATGCTGTTGCAAATAGACGTGCAACTAAATTTCTCTAAGTAGCATTTTCAATTGAAAGAATAATACTTTTTCTTATGTGTGCTACTTTTGCTGAACTACAGTGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCC</genome_strand>
        <mrna_strand>CTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTTTCAACCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGGTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGTGGGTATGGGACCCATCTTTCCCTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGGTAAAACACTTGTTGTATGGCCGTGATGGGAAGATTTCGCCTGATTCTTGCGTTAAAGGACAATGGGGGACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAAGATGCTTTTGCAGTCAAGGTTCCGGACCACAAAGAAAGAAGAGGCGGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGCGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATTTCAGGTTATTCGGTGGCCGCAACCACATATTTGTCTTCCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGGAGCTCATTTATTTAAATAGTGGGCGACATACTTGAATCGGGCTATAATACTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442402" ref_strand="+" ref_description="SGN-E442402 [cSTA-33-G16]">
      <seq>ctttcttcctcaccagaatcttcgaggcagtcactcaattcctcttccttttcaacccctacttctggacaatacagatccaagaacgacgtcgtacggttctccgattccggtgggtccatcttttggccacaacgtgggtatgggacccatctttccctgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgttgtatggccgtgatgggaagatttcgcctgattcttgcgttaaaggacaatggggtactcaggttaagatacataggatgcttttgcagtcaaggttccggaccagaaagaaagaagaggcggaccttttctttgtgcctgcttatcctaagtgtgttcgagtgatgggcggactgaatgacaaagagattaatcagacctatgtgaaggtcctaagtcaaatgccatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53423" stop="57404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53723" g_stop="53994" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56889" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="420" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57083" g_stop="57104" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="442" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E442402" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53723" e_stop="53994"/>
          <exon e_start="56743" e_stop="56889"/>
          <exon e_start="57083" e_stop="57104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCTCACCAGAATCTTCGA-CCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAGGTAGTAAAATTCAGGACCTGAAAATTACATTGGTGCTGTCAAAAAACTTTCTAAGTTCTATTTATTGCTATAGTTGAATAATTGAGATATTTTGCTTGGCTTTAGAGCTTCAATTGAATTGTCACTGTATCCATTTTCTCTCATGTACCTTTATGTATGATCTCCTCTCTCTCTCTCAACCTTTTGCTTGCAGGTCCTAAGTCAAATGCCATATT</genome_strand>
        <mrna_strand>CTTTCTTCCTCACCAGAATCTTCGAGGCAGTCACTCAATTCCTCTTCCTTTTCAACCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCGTACGGTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGTGGGTATGGGACCCATCTTTCCCTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATGGGAAGATTTCGCCTGATTCTTGCGTTAAAGGACAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACCAGAAAGAAAGAAGAGGCGGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGCGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAG.................................................................................................................................................................................................GTCCTAAGTCAAATGCCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274287" ref_strand="+" ref_description="SGN-E274287 [cLEN-15-J12]">
      <seq>ctcaatccctacttttggacaatacagatccaagaacgacgtcgtacgcttctccgattccggtgggtccatcttttggccacaacgcgggtatgggacccatctttcactgaagatttatgtgtatgatgagaatgaaattgatgggttaaaacacttgctgaatggccgtgatcggaagatttcgcctgattcttgcgttaaaggtcaatggggtactcaggttaagatacataggatgcttttacagtcgaggttccggactagaaagaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0208L16-pKNkq/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0208L16.1" temp_strand="+" temp_description="C04HBa0208L16.1  CU928193.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0208L16 sequenced_by:sanger upload_account_name:uk">
        <position start="53472" stop="57095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53772" g_stop="53994" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56743" g_stop="56795" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="276" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0208L16.1" gen_strand="+" ref_id="SGN-E274287" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0208L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53772" e_stop="53994"/>
          <exon e_start="56743" e_stop="56795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAGGTAATATTTTTTCCCAATTTTTCCAGTATTATGAGAAACTTGTTCAAGTTAAATTGACAGGAATTAGCGAATTGCTGTTAGTTTTTGTGAATATTGTTCTTCCTATCAGATTGGATTTGGGAAATGTTAGATTTTTTTTAGGATAATCAAGTATTTTAGTGTAATGTAGTAGAAGTTAATCATTATATGGTTGCGATTTTGGTTATCAAGAACTTGGTTGAATTTGTGTTGGTAGACCAGATCAATAGCAGCTCCACACATTGATTTTTTGCAACTTCTAGCATATGGAGCTCGCTAACATCCACATATTAGTGAGAAAATGGCGAATCATCAAGGAAGTTATCGTTTTGTTTTAATCATGTATTTGCTGTCTTGGATGAAGATGCTTTAGAGTAGTTATGATTTTGAGGGCATGATTTGAAATTAGTTGTTACAATGTAGATGTGGTTATTGTAAGCTAGTAGCAAAACTAGGTAGCGTGAAGTAACTTCTAGCATATGGACCTCGCTAACATCCACATATTATCAAGAGCCTGCATTTTGCCCGTTTATCGAAGTCTAATTTTTGTCAAACATTACTTTTTCCATGTCTAACAATGAGGATTAATATTATCTTTTTGAGGCTGGTAACATTAGTCTAGAGATATCCACAGGTATACAACAACCAAAAGTGTAGTTCCCCTTCAAAAAAAGTATACATCTTATAAAATAATCAGACCTATAAACAATCTAGTACATCAATTATGTCTTCTGTTCTAGCTAAAATATCTTGTTTACACCAAATATAGAAAAGAGCTAAGCAATTCATCCTAATCTTCCGAAGGCTATTCTGCACATTTTCAAAGCTCCTATTGTTCCTCTCTTTCCAAATTGTCCACCAAATACATGTTGGGACAATCTTCCATCTGACCTTCTCCTTTGAAGCATTGCCACCAAATGCATAAGGGTTAACATCTAAGAGTCAAAGTGGTGTGAAGTTGTTGTACAATTTGTAACTCTCTTCTTTTCGAATTATAAGTCGTTGTTGCAAAGAAAGGGAAATTGAAGAAGGAGAAACAGAAAAGGATCTTAAGGGAATATATCTGTTTTCTTCATTTGCTTAAGTGACATCTGAGGAACTATCAAGGAAAAGCACATTTGTCCTTCTACTTGTGAAGCGACTTGAAGTCCTTCCTTGTAGTTCTCTATCTTCATTTGAGAATTACTTGTAAATTTTCTTGACTATTTGAGATCATGTGCAACATTTCTACTCCAAATCTACTCCGGCTGTGGAGAAAAATCTGGAAAACCAAAGCTCCTTAAAAGGTTTATTGTTCTGTCTAGTTAGTTGCAAAGGAGGCCTGCCTAATCCAATACAATCTCCAAAAGAGAGGCTACCAAATGTGCAGAAGATAACCACTTTGTGAAGGTTAAGTGGAAGACAAGCGTCTCTTCTTGCACTGTCACTTCACACATCAAATGTGACCACTCTTCTTCAATACCTTTACATTAAAACCAATCGTCGACTTTCTGAAGATTTGGCACAGTAAAAAGACCTCAGCGAGGCAACATCAGTATTTGGCATTCCATCCCAGCTGCTATATGGTGGACTCATTAGAGGGAATCAGGGAAAGAAACCATACAGTTTTTGAAGGCAAATTTGAAAATGTCATTACCCTTAAGCATAGTTGTATACTTTTGCTTCACTTTTGGTGCAAGTTGGCATTGTAAATGATGCCGAAGCCATTCTGCGTTTCTTCAGAACTTTACATTATATGTGACTGCATCCTCTGCTTAGTCTCCAAATCATCACTTTCTTACTGATGGAATAATTTGTTCTTTACTTGTCAGAAAAAGTTTCCTATCTTTATTTTTTGGAACTGGTAACTTGGATGTATAAATAAACAAAACAGTACATGTGTTGTACTTTAACTATATTTTTTGAGATTCTAAGGAATTAGATGGTACCTAGAACATTAACTATATCAACAGAATCCTCAGAATAAGTCTGTTTACACAAACAAAAAAGCAGAAGGCAATTCTATTTGATCTTTTGCACTGAGTTAATCAAAACACCTGGAATTCCTTTCTTTCCAGACTGTCCACCAAATGCTTGCAGGGACATTTCTCCATCTACTCCTGTCTTCTGCCTGAACTCCCGCATTCTCTCAACTATGTAAAACTTCAGTGACCTTTTCGTGCATTATCCGTTTGATCTTCGGTTGAAAGTGATATCCCATCCATGCTCTGTCCTTATTTCTTCTATGGTCTTATGTTGAAGCACCACTAAGTTGAATATGTCTGGGAATCTCTCAAGAAGACTAGTTCTCTATCTTTATTTGGTAATCAATAAAGAGGTTTTAATATTTTCTTCCTTTTATTTATTTTCTTTATTTCATTTCCTTAACTTCAAAAGCTTTAGTGACAAAGATGACTCGTTGTGTCAATAAATTTCTCCGTCTATGCAGGGTATTGCTAGAATTTACTCTCCACTTTTTTCTTCAAACTATAAATCTGAGTATTTTTATTTTGGCTCTTTTTCTCGAGGGAAACATAAGTAAAGCCTGCAAGTATTACATTGTTGCCACCCAATAATAGCATGAAAAATTTTCAGTACTAGGCTTTGTAGACCCTTGTGGTCTGGCCCTTCCCTGGACCCCGCGCATAGAGGTAACTTACTGCACTGGGATTCCCTTATTAGGCTTCCTGTTATAGTTTTGAATTTAACTATCTAATGCTTCTATATCTTGTTCTTTTGATGTGCCTGTAGGTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGA</genome_strand>
        <mrna_strand>CTCAATCCCTACTTTTGGACAATACAGATCCAAGAACGACGTCGTACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGCTGAATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGATACATAGGATGCTTTTACAGTCGAGGTTCCGGACTAGAAAGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>38</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="591" PGL_stop="776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="591" e_stop="776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="591" e_stop="776" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="591" stop="776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACTTCCAGATTGATGGAAAGATGAAACTCGGAATGACGATAAATGGCGCCTTCAAGCATGCCTTAGCTACTTGGAAATCTTGGGTTGAAAAGAAGGTCAACACTGATAGGACACGTGTATTCTTTCGGACTTTCGAAGCTACTCATTGGAGGTGTGCTTAATTTTCTGATATAACCTGCTCGTC</gDNA_template>
            <first_frame> V  L  P  D  *  W  K  D  E  T  R  N  D  D  K  W  R  L  Q  A  C  L  S  Y  L  E  I  L  G  *  K  E  G  Q  H  *  *  D  T  C  I  L  S  D  F  R  S  Y  S  L  E  V  C  L  I  F  *  Y  N  L  L  V </first_frame>
            <second_frame>  Y  F  Q  I  D  G  K  M  K  L  G  M  T  I  N  G  A  F  K  H  A  L  A  T  W  K  S  W  V  E  K  K  V  N  T  D  R  T  R  V  F  F  R  T  F  E  A  T  H  W  R  C  A  *  F  S  D  I  T  C  S   </second_frame>
            <third_frame>   T  S  R  L  M  E  R  *  N  S  E  *  R  *  M  A  P  S  S  M  P  *  L  L  G  N  L  G  L  K  R  R  S  T  L  I  G  H  V  Y  S  F  G  L  S  K  L  L  I  G  G  V  L  N  F  L  I  *  P  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0208L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14175" PGL_stop="22025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14175" e_stop="14336"/>
            <exon e_start="18222" e_stop="18667"/>
            <exon e_start="18782" e_stop="18955"/>
            <exon e_start="19043" e_stop="19333"/>
            <exon e_start="19423" e_stop="19512"/>
            <exon e_start="20476" e_stop="20577"/>
            <exon e_start="20673" e_stop="20791"/>
            <exon e_start="21160" e_stop="21222"/>
            <exon e_start="21320" e_stop="21381"/>
            <exon e_start="21610" e_stop="22025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.047" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="0.962"/>
          <exon-intron don_prob="0.996" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14175" e_stop="14336" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14337" i_stop="18221" i_length="3885"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18222" e_stop="18667" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="18782" e_stop="18955" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.047">
            <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="19043" e_stop="19333" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="19334" i_stop="19422" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19423" e_stop="19512" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.932">
            <gDNA_intron_boundary i_start="19513" i_stop="20475" i_length="963"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="20476" e_stop="20577" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20673" e_stop="20791" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21160" e_stop="21222" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.725" acc_prob="0.797">
            <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21320" e_stop="21381" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.891">
            <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="21610" e_stop="22025" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14336"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14336"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14336"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14336"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14175" stop="14336"/>
              <exon start="18222" stop="18548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14272" stop="14336"/>
              <exon start="18222" stop="18636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14287" stop="14336"/>
              <exon start="18222" stop="18574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18233" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19333"/>
              <exon start="19423" stop="19428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19200" stop="19333"/>
              <exon start="19423" stop="19512"/>
              <exon start="20476" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="21777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20499" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="22025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCCAATTCATGATTCATAAATAAGCTTTTCTTTCTCCAATTTTTTCTCATTATCCAATTAATATTTTTACTTTCTTTTTCTATTCAAAAACTTCAAATAGCATCCATATTCTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG : ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG : AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTG : GGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGTGTCGTGACCATTTACGTTGTGATATCACAATTAGCCATGGCTGGATCTATGCCTTTGCCTCATTATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAA : GTCATGTGGTCAACTTTCATCCCATATGTTCCAAATACCATCTTGCCTGGTGCTGTGGCTTTTGTTCTGGCTATCTTAGCTGTCTTTATG : TCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATG : TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG : GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG : CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG : TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGGACAAATTCTTAATAAATATAAAGTTTAAAACCATATTTGCA</gDNA_template>
            <first_frame> L  L  P  I  H  D  S  *  I  S  F  S  F  S  N  F  F  S  L  S  N  *  Y  F  Y  F  L  F  L  F  K  N  F  K  *  H  P  Y  S  Y  L  T  I  K  L  S  K  S  C  T  T  F  P  Q  :  I  S  Y  R  L  D  F  V  L  E  H  T  S  N  C  L  F  I  L  V  E  N  Y  *  K  L  D  Q  L  P  L  W  E  L  P  F  I  P  I  T  I  D  L  F  R  *  K  Y  L  P  Y  S  W  *  *  I  *  T  Y  S  S  F  I  F  *  Y  L  E  W  L  D  L  C  C  Q  W  V  R  Q  S  Y  V  P  A  N  L  P  N  V  I  C  S  M  L  I  S  S  I  R  S  Q  F  Q  F  S  L  H  I  R  K  E  S  N  R  I  I  L  *  T  S  Q  C  S  *  V  H  *  F  A  N  T  G  *  N  Q  F  R  R  L  T  Q  M  F  P  I  L  L  N  R :   V  Q  K  V  *  R  A  A  R  A  L  S  N  G  I  H  *  L  R  N  L  Q  E  L  Q  I  F  R  F  S  Y  Y  N  C  L  K  *  Y  *  M  L  V  T  F  *  Q  E  I  K  L  H  Y  L  Q  F  H  G  W :   G  C  S  L  D  Y  L  V  I  Y  L  C  Y  H  T  L  *  R  R  G  R  R  K  W  L  L  C  K  L  W  V  S  *  P  F  T  L  *  Y  H  N  *  P  W  L  D  L  C  L  C  L  I  M  Q  S  L  L  L  L  L  R  V  V  L  L  *  T  S  *  T  T  S  T  C  S  I  P  *  S  G  V  T  G  R  I  S  L  L  L  L  A  Y  L  R  F  P  K :   S  C  G  Q  L  S  S  H  M  F  Q  I  P  S  C  L  V  L  W  L  L  F  W  L  S  *  L  S  L  C :   L  G  L  G  N  F  Q  R  R  A  S  N  L  *  D  H  Y  L  D  G  L  P  H  F  F  S  C  G  C  Q  F  H  K  C :   G  Q  T  F  *  I  Q  I  I  *  K  V  Y  Q  L  F  R  C  C  L  Q  *  L  G  M  D  S  *  F  H  E  H  S  L  L  G  I  *  C   : G  S  P  V  Q  L  G  H  A  F  F  M  D  G  E  T  L  S  A  Y  I   : A  A  K  L  *  A  G  N  F  S  W  L  Q  Q  L  P  L  *  H  G  W  :  C  S  A  S  G  E  T  H  K  Y  M  D  I  I  L  H  *  N  R  *  R  N  *  F  L  V  H  N  *  S  Y  L  S  Y  L  V  G  F  G  Y  I  F  E  M  Q  E  C  *  S  L  A  F  L  L  *  I  N  C  S  S  L  E  D  L  V  K  V  L  L  A  S  V  F  G  G  T  S  G  K  V  *  L  Q  C  Q  I  I  Q  H  M  V  Y  E  E  G  S  C  G  S  F  T  C  N  I  N  Q  *  *  S  Y  I  C  N  V  S  A  N  I  F  V  V  L  H  F  G  T  N  S  *  *  I  *  S  L  K  P  Y  L   </first_frame>
            <second_frame>  F  F  Q  F  M  I  H  K  *  A  F  L  S  P  I  F  S  H  Y  P  I  N  I  F  T  F  F  F  Y  S  K  T  S  N  S  I  H  I  L  I  L  Q  S  N  Y  Q  N  L  V  Q  L  F  L  R :   F  R  T  G  W  T  L  C  W  S  I  P  V  I  V  F  S  F  *  L  K  T  I  R  S  W  I  S  C  L  F  G  N  Y  P  L  Y  P  L  R  L  T  F  L  D  K  N  I  S  L  T  A  G  D  E  Y  K  L  I  V  P  S  F  F  D  I  L  N  G  W  I  F  V  A  S  G  *  G  S  P  T  F  P  P  T  F  Q  M  L  Y  V  Q  C  *  S  P  A  S  E  V  N  S  N  S  P  S  I  *  E  K  S  Q  T  E  *  Y  F  E  Q  V  S  A  P  K  S  I  S  L  P  I  P  V  K  T  S  F  G  A  *  L  R  C  S  L  S  Y  *  T   : E  F  R  R  F  K  E  Q  R  E  L  *  A  M  G  F  I  D  C  E  I  C  R  S  C  K  Y  S  V  S  H  I  T  T  A  S  N  N  T  E  C  S  *  P  S  S  R  K  S  S  C  I  I  C  S  S  M  A   : G  D  V  H  W  I  T  W  *  F  I  F  A  I  I  L  Y  K  E  E  G  D  G  S  G  C  C  A  N  F  G  C  R  D  H  L  R  C  D  I  T  I  S  H  G  W  I  Y  A  F  A  S  L  C  S  H  F  C  C  Y  C  V  W  S  C  C  E  L  H  E  L  L  P  L  A  Q  S  R  N  L  A  L  L  G  G  F  H  Y  Y  C  W  L  I  C  A  S  P   : S  H  V  V  N  F  H  P  I  C  S  K  Y  H  L  A  W  C  C  G  F  C  S  G  Y  L  S  C  L  Y   : V  S  D  W  E  T  S  R  E  G  H  Q  I  C  R  I  I  I  W  M  D  C  H  T  S  F  H  V  D  A  S  F  T  N   : V  D  K  P  S  K  S  R  *  Y  K  R  F  I  S  S  F  D  V  A  C  N  D  W  E  W  T  H  D  S  T  S  T  L  Y  S  G  F  D  V  :  V  H  R  F  N  L  G  M  R  F  L  W  M  G  K  P  C  L  L  I  L  :  L  R  S  Y  K  Q  G  I  F  L  G  F  N  N  C  L  C  S  M  A  G :   V  Q  L  L  E  R  H  T  S  I  W  I  *  F  S  I  E  I  V  E  G  T  D  F  W  F  I  T  D  P  T  C  P  T  L  L  A  L  A  T  Y  L  K  C  K  N  V  K  V  W  H  F  C  Y  E  S  I  A  L  L  *  K  I  W  *  K  C  F  W  Q  V  F  L  G  V  H  Q  A  R  S  S  C  N  V  K  L  F  S  I  W  F  M  R  K  V  P  V  V  L  L  H  V  I  L  I  N  N  K  A  T  F  A  M  L  V  Q  I  Y  L  L  Y  Y  I  L  G  Q  I  L  N  K  Y  K  V  *  N  H  I  C  </second_frame>
            <third_frame>   S  S  N  S  *  F  I  N  K  L  F  F  L  Q  F  F  L  I  I  Q  L  I  F  L  L  S  F  S  I  Q  K  L  Q  I  A  S  I  F  L  S  Y  N  Q  T  I  K  I  L  Y  N  F  S  S   : D  F  V  Q  A  G  L  C  V  G  A  Y  Q  *  L  S  F  H  F  S  *  K  L  L  E  V  G  S  A  A  S  L  G  I  T  L  Y  T  H  Y  D  *  P  F  *  I  K  I  S  P  L  Q  L  V  M  N  I  N  L  *  F  L  H  F  L  I  S  *  M  A  G  S  L  L  P  V  G  K  A  V  L  R  S  R  Q  P  S  K  C  Y  M  F  N  A  D  L  Q  H  P  K  S  I  P  I  L  P  P  Y  K  K  R  V  K  Q  N  N  T  L  N  K  S  V  L  L  S  P  L  V  C  Q  Y  R  L  K  P  V  S  A  L  D  S  D  V  P  Y  P  I  E  Q  :  S  S  E  G  L  K  S  S  E  S  F  K  Q  W  D  S  L  T  A  K  F  A  G  A  A  N  I  P  F  L  I  L  Q  L  P  Q  I  I  L  N  A  R  N  L  L  A  G  N  Q  A  A  L  F  A  V  P  W  L  :  G  M  F  T  G  L  L  G  N  L  S  L  L  S  Y  F  I  K  K  R  E  T  E  V  V  V  V  Q  T  L  G  V  V  T  I  Y  V  V  I  S  Q  L  A  M  A  G  S  M  P  L  P  H  Y  A  V  T  S  V  V  I  A  C  G  L  V  V  N  F  M  N  Y  F  H  L  L  N  P  V  I  W  R  Y  W  E  D  F  I  T  I  A  G  L  S  A  L  P  Q  :  V  M  W  S  T  F  I  P  Y  V  P  N  T  I  L  P  G  A  V  A  F  V  L  A  I  L  A  V  F  M  :  S  R  T  G  K  L  P  E  K  G  I  K  F  V  G  S  L  S  G  W  T  A  T  L  L  F  M  W  M  P  V  S  Q  M  :  W  T  N  L  L  N  P  D  N  I  K  G  L  S  A  L  S  M  L  L  A  M  I  G  N  G  L  M  I  P  R  A  L  F  T  R  D  L  M  W :   F  T  G  S  T  W  A  C  V  F  Y  G  W  G  N  L  V  C  L  Y  C :   C  E  V  I  S  R  E  F  F  L  A  S  T  T  A  F  V  A  W  L   : V  F  S  F  W  R  D  T  Q  V  Y  G  Y  N  S  P  L  K  S  L  K  E  L  I  S  G  S  *  L  I  L  L  V  L  P  C  W  L  W  L  H  I  *  N  A  R  M  L  K  F  G  I  S  A  M  N  Q  L  L  F  F  R  R  F  G  E  S  A  F  G  K  C  F  W  G  Y  I  R  Q  G  L  V  A  M  S  N  Y  S  A  Y  G  L  *  G  R  F  L  W  F  F  Y  M  *  Y  *  S  I  I  K  L  H  L  Q  C  *  C  K  Y  I  C  C  I  T  F  W  D  K  F  L  I  N  I  K  F  K  T  I  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18425" stop="18667"/>
                    <exon start="18782" stop="18955"/>
                    <exon start="19043" stop="19333"/>
                    <exon start="19423" stop="19512"/>
                    <exon start="20476" stop="20577"/>
                    <exon start="20673" stop="20791"/>
                    <exon start="21160" stop="21222"/>
                    <exon start="21320" stop="21381"/>
                    <exon start="21610" stop="21692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAGSLLPVGKAVLRSRQPSKCYMFNADLQHPKSIPILPPYKKRVKQNNTLNKSVLLSPLVCQYRLKPVSALDSDVPYPIEQSSEGLKSSESFKQWDSLTAKFAGAANIPFLILQLPQIILNARNLLAGNQAALFAVPWLGMFTGLLGNLSLLSYFIKKRETEVVVVQTLGVVTIYVVISQLAMAGSMPLPHYAVTSVVIACGLVVNFMNYFHLLNPVIWRYWEDFITIAGLSALPQVMWSTFIPYVPNTILPGAVAFVLAILAVFMSRTGKLPEKGIKFVGSLSGWTATLLFMWMPVSQMWTNLLNPDNIKGLSALSMLLAMIGNGLMIPRALFTRDLMWFTGSTWACVFYGWGNLVCLYCCEVISREFFLASTTAFVAWLVFSFWRDTQVYGYNSPLKSLKELISGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21806" stop="22012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCFWQVFLGVHQARSSCNVKLFSIWFMRKVPVVLLHVILINNKATFAMLVQIYLLYYILGQILNKYKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17015" e_stop="17111"/>
            <exon e_start="18222" e_stop="18667"/>
            <exon e_start="18782" e_stop="18955"/>
            <exon e_start="19043" e_stop="19333"/>
            <exon e_start="19423" e_stop="19512"/>
            <exon e_start="20476" e_stop="20577"/>
            <exon e_start="20673" e_stop="20791"/>
            <exon e_start="21160" e_stop="21222"/>
            <exon e_start="21320" e_stop="21381"/>
            <exon e_start="21610" e_stop="22025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.994" e_score="0.979"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.991"/>
          <exon-intron don_prob="0.988" acc_prob="0.047" e_score="0.971"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="0.962"/>
          <exon-intron don_prob="0.996" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="17015" e_stop="17111" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17112" i_stop="18221" i_length="1110"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="18222" e_stop="18667" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="18782" e_stop="18955" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.047">
            <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="19043" e_stop="19333" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="19334" i_stop="19422" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19423" e_stop="19512" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.932">
            <gDNA_intron_boundary i_start="19513" i_stop="20475" i_length="963"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="20476" e_stop="20577" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20673" e_stop="20791" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21160" e_stop="21222" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.725" acc_prob="0.797">
            <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21320" e_stop="21381" e_length="62"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.891">
            <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="21610" e_stop="22025" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17015" stop="17111"/>
              <exon start="18222" stop="18507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17111"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17111"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17092" stop="17111"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18233" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19333"/>
              <exon start="19423" stop="19428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19200" stop="19333"/>
              <exon start="19423" stop="19512"/>
              <exon start="20476" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="21777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20499" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="22025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAGTCATCAATTGAAAGGAAGCTCAATTCACTATTATATTACAAACCTCTTCTTATGCCCCTAAAAGGGTCCAATTAAAGCCAACTATAAAAGG : ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG : AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTG : GGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGTGTCGTGACCATTTACGTTGTGATATCACAATTAGCCATGGCTGGATCTATGCCTTTGCCTCATTATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAA : GTCATGTGGTCAACTTTCATCCCATATGTTCCAAATACCATCTTGCCTGGTGCTGTGGCTTTTGTTCTGGCTATCTTAGCTGTCTTTATG : TCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATG : TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG : GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG : CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG : TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGGACAAATTCTTAATAAATATAAAGTTTAAAACCATATTTGCA</gDNA_template>
            <first_frame> F  Q  S  S  I  E  R  K  L  N  S  L  L  Y  Y  K  P  L  L  M  P  L  K  G  S  N  *  S  Q  L  *  K   : D  F  V  Q  A  G  L  C  V  G  A  Y  Q  *  L  S  F  H  F  S  *  K  L  L  E  V  G  S  A  A  S  L  G  I  T  L  Y  T  H  Y  D  *  P  F  *  I  K  I  S  P  L  Q  L  V  M  N  I  N  L  *  F  L  H  F  L  I  S  *  M  A  G  S  L  L  P  V  G  K  A  V  L  R  S  R  Q  P  S  K  C  Y  M  F  N  A  D  L  Q  H  P  K  S  I  P  I  L  P  P  Y  K  K  R  V  K  Q  N  N  T  L  N  K  S  V  L  L  S  P  L  V  C  Q  Y  R  L  K  P  V  S  A  L  D  S  D  V  P  Y  P  I  E  Q  :  S  S  E  G  L  K  S  S  E  S  F  K  Q  W  D  S  L  T  A  K  F  A  G  A  A  N  I  P  F  L  I  L  Q  L  P  Q  I  I  L  N  A  R  N  L  L  A  G  N  Q  A  A  L  F  A  V  P  W  L  :  G  M  F  T  G  L  L  G  N  L  S  L  L  S  Y  F  I  K  K  R  E  T  E  V  V  V  V  Q  T  L  G  V  V  T  I  Y  V  V  I  S  Q  L  A  M  A  G  S  M  P  L  P  H  Y  A  V  T  S  V  V  I  A  C  G  L  V  V  N  F  M  N  Y  F  H  L  L  N  P  V  I  W  R  Y  W  E  D  F  I  T  I  A  G  L  S  A  L  P  Q  :  V  M  W  S  T  F  I  P  Y  V  P  N  T  I  L  P  G  A  V  A  F  V  L  A  I  L  A  V  F  M  :  S  R  T  G  K  L  P  E  K  G  I  K  F  V  G  S  L  S  G  W  T  A  T  L  L  F  M  W  M  P  V  S  Q  M  :  W  T  N  L  L  N  P  D  N  I  K  G  L  S  A  L  S  M  L  L  A  M  I  G  N  G  L  M  I  P  R  A  L  F  T  R  D  L  M  W :   F  T  G  S  T  W  A  C  V  F  Y  G  W  G  N  L  V  C  L  Y  C :   C  E  V  I  S  R  E  F  F  L  A  S  T  T  A  F  V  A  W  L   : V  F  S  F  W  R  D  T  Q  V  Y  G  Y  N  S  P  L  K  S  L  K  E  L  I  S  G  S  *  L  I  L  L  V  L  P  C  W  L  W  L  H  I  *  N  A  R  M  L  K  F  G  I  S  A  M  N  Q  L  L  F  F  R  R  F  G  E  S  A  F  G  K  C  F  W  G  Y  I  R  Q  G  L  V  A  M  S  N  Y  S  A  Y  G  L  *  G  R  F  L  W  F  F  Y  M  *  Y  *  S  I  I  K  L  H  L  Q  C  *  C  K  Y  I  C  C  I  T  F  W  D  K  F  L  I  N  I  K  F  K  T  I  F  A </first_frame>
            <second_frame>  F  S  H  Q  L  K  G  S  S  I  H  Y  Y  I  T  N  L  F  L  C  P  *  K  G  P  I  K  A  N  Y  K  R  :  I  S  Y  R  L  D  F  V  L  E  H  T  S  N  C  L  F  I  L  V  E  N  Y  *  K  L  D  Q  L  P  L  W  E  L  P  F  I  P  I  T  I  D  L  F  R  *  K  Y  L  P  Y  S  W  *  *  I  *  T  Y  S  S  F  I  F  *  Y  L  E  W  L  D  L  C  C  Q  W  V  R  Q  S  Y  V  P  A  N  L  P  N  V  I  C  S  M  L  I  S  S  I  R  S  Q  F  Q  F  S  L  H  I  R  K  E  S  N  R  I  I  L  *  T  S  Q  C  S  *  V  H  *  F  A  N  T  G  *  N  Q  F  R  R  L  T  Q  M  F  P  I  L  L  N  R :   V  Q  K  V  *  R  A  A  R  A  L  S  N  G  I  H  *  L  R  N  L  Q  E  L  Q  I  F  R  F  S  Y  Y  N  C  L  K  *  Y  *  M  L  V  T  F  *  Q  E  I  K  L  H  Y  L  Q  F  H  G  W :   G  C  S  L  D  Y  L  V  I  Y  L  C  Y  H  T  L  *  R  R  G  R  R  K  W  L  L  C  K  L  W  V  S  *  P  F  T  L  *  Y  H  N  *  P  W  L  D  L  C  L  C  L  I  M  Q  S  L  L  L  L  L  R  V  V  L  L  *  T  S  *  T  T  S  T  C  S  I  P  *  S  G  V  T  G  R  I  S  L  L  L  L  A  Y  L  R  F  P  K :   S  C  G  Q  L  S  S  H  M  F  Q  I  P  S  C  L  V  L  W  L  L  F  W  L  S  *  L  S  L  C :   L  G  L  G  N  F  Q  R  R  A  S  N  L  *  D  H  Y  L  D  G  L  P  H  F  F  S  C  G  C  Q  F  H  K  C :   G  Q  T  F  *  I  Q  I  I  *  K  V  Y  Q  L  F  R  C  C  L  Q  *  L  G  M  D  S  *  F  H  E  H  S  L  L  G  I  *  C   : G  S  P  V  Q  L  G  H  A  F  F  M  D  G  E  T  L  S  A  Y  I   : A  A  K  L  *  A  G  N  F  S  W  L  Q  Q  L  P  L  *  H  G  W  :  C  S  A  S  G  E  T  H  K  Y  M  D  I  I  L  H  *  N  R  *  R  N  *  F  L  V  H  N  *  S  Y  L  S  Y  L  V  G  F  G  Y  I  F  E  M  Q  E  C  *  S  L  A  F  L  L  *  I  N  C  S  S  L  E  D  L  V  K  V  L  L  A  S  V  F  G  G  T  S  G  K  V  *  L  Q  C  Q  I  I  Q  H  M  V  Y  E  E  G  S  C  G  S  F  T  C  N  I  N  Q  *  *  S  Y  I  C  N  V  S  A  N  I  F  V  V  L  H  F  G  T  N  S  *  *  I  *  S  L  K  P  Y  L   </second_frame>
            <third_frame>   S  V  I  N  *  K  E  A  Q  F  T  I  I  L  Q  T  S  S  Y  A  P  K  R  V  Q  L  K  P  T  I  K  G :   F  R  T  G  W  T  L  C  W  S  I  P  V  I  V  F  S  F  *  L  K  T  I  R  S  W  I  S  C  L  F  G  N  Y  P  L  Y  P  L  R  L  T  F  L  D  K  N  I  S  L  T  A  G  D  E  Y  K  L  I  V  P  S  F  F  D  I  L  N  G  W  I  F  V  A  S  G  *  G  S  P  T  F  P  P  T  F  Q  M  L  Y  V  Q  C  *  S  P  A  S  E  V  N  S  N  S  P  S  I  *  E  K  S  Q  T  E  *  Y  F  E  Q  V  S  A  P  K  S  I  S  L  P  I  P  V  K  T  S  F  G  A  *  L  R  C  S  L  S  Y  *  T   : E  F  R  R  F  K  E  Q  R  E  L  *  A  M  G  F  I  D  C  E  I  C  R  S  C  K  Y  S  V  S  H  I  T  T  A  S  N  N  T  E  C  S  *  P  S  S  R  K  S  S  C  I  I  C  S  S  M  A   : G  D  V  H  W  I  T  W  *  F  I  F  A  I  I  L  Y  K  E  E  G  D  G  S  G  C  C  A  N  F  G  C  R  D  H  L  R  C  D  I  T  I  S  H  G  W  I  Y  A  F  A  S  L  C  S  H  F  C  C  Y  C  V  W  S  C  C  E  L  H  E  L  L  P  L  A  Q  S  R  N  L  A  L  L  G  G  F  H  Y  Y  C  W  L  I  C  A  S  P   : S  H  V  V  N  F  H  P  I  C  S  K  Y  H  L  A  W  C  C  G  F  C  S  G  Y  L  S  C  L  Y   : V  S  D  W  E  T  S  R  E  G  H  Q  I  C  R  I  I  I  W  M  D  C  H  T  S  F  H  V  D  A  S  F  T  N   : V  D  K  P  S  K  S  R  *  Y  K  R  F  I  S  S  F  D  V  A  C  N  D  W  E  W  T  H  D  S  T  S  T  L  Y  S  G  F  D  V  :  V  H  R  F  N  L  G  M  R  F  L  W  M  G  K  P  C  L  L  I  L  :  L  R  S  Y  K  Q  G  I  F  L  G  F  N  N  C  L  C  S  M  A  G :   V  Q  L  L  E  R  H  T  S  I  W  I  *  F  S  I  E  I  V  E  G  T  D  F  W  F  I  T  D  P  T  C  P  T  L  L  A  L  A  T  Y  L  K  C  K  N  V  K  V  W  H  F  C  Y  E  S  I  A  L  L  *  K  I  W  *  K  C  F  W  Q  V  F  L  G  V  H  Q  A  R  S  S  C  N  V  K  L  F  S  I  W  F  M  R  K  V  P  V  V  L  L  H  V  I  L  I  N  N  K  A  T  F  A  M  L  V  Q  I  Y  L  L  Y  Y  I  L  G  Q  I  L  N  K  Y  K  V  *  N  H  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18425" stop="18667"/>
                    <exon start="18782" stop="18955"/>
                    <exon start="19043" stop="19333"/>
                    <exon start="19423" stop="19512"/>
                    <exon start="20476" stop="20577"/>
                    <exon start="20673" stop="20791"/>
                    <exon start="21160" stop="21222"/>
                    <exon start="21320" stop="21381"/>
                    <exon start="21610" stop="21692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAGSLLPVGKAVLRSRQPSKCYMFNADLQHPKSIPILPPYKKRVKQNNTLNKSVLLSPLVCQYRLKPVSALDSDVPYPIEQSSEGLKSSESFKQWDSLTAKFAGAANIPFLILQLPQIILNARNLLAGNQAALFAVPWLGMFTGLLGNLSLLSYFIKKRETEVVVVQTLGVVTIYVVISQLAMAGSMPLPHYAVTSVVIACGLVVNFMNYFHLLNPVIWRYWEDFITIAGLSALPQVMWSTFIPYVPNTILPGAVAFVLAILAVFMSRTGKLPEKGIKFVGSLSGWTATLLFMWMPVSQMWTNLLNPDNIKGLSALSMLLAMIGNGLMIPRALFTRDLMWFTGSTWACVFYGWGNLVCLYCCEVISREFFLASTTAFVAWLVFSFWRDTQVYGYNSPLKSLKELISGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21806" stop="22012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCFWQVFLGVHQARSSCNVKLFSIWFMRKVPVVLLHVILINNKATFAMLVQIYLLYYILGQILNKYKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14290" e_stop="14336"/>
            <exon e_start="17657" e_stop="17663"/>
            <exon e_start="18222" e_stop="18667"/>
            <exon e_start="18782" e_stop="18955"/>
            <exon e_start="19043" e_stop="19333"/>
            <exon e_start="19423" e_stop="19512"/>
            <exon e_start="20476" e_stop="20577"/>
            <exon e_start="20673" e_stop="20791"/>
            <exon e_start="21160" e_stop="21222"/>
            <exon e_start="21320" e_stop="21381"/>
            <exon e_start="21610" e_stop="22025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.984" e_score="0.745"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.571"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.901"/>
          <exon-intron don_prob="0.988" acc_prob="0.047" e_score="0.966"/>
          <exon-intron don_prob="0.997" acc_prob="0.947" e_score="0.962"/>
          <exon-intron don_prob="0.996" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.745">
            <gDNA_exon_boundary e_start="14290" e_stop="14336" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.984">
            <gDNA_intron_boundary i_start="14337" i_stop="17656" i_length="3320"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="17657" e_stop="17663" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17664" i_stop="18221" i_length="558"/>
          </intron>
          <exon e_serial="3" e_score="0.901">
            <gDNA_exon_boundary e_start="18222" e_stop="18667" e_length="446"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18668" i_stop="18781" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="18782" e_stop="18955" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.047">
            <gDNA_intron_boundary i_start="18956" i_stop="19042" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="19043" e_stop="19333" e_length="291"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.947">
            <gDNA_intron_boundary i_start="19334" i_stop="19422" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19423" e_stop="19512" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.932">
            <gDNA_intron_boundary i_start="19513" i_stop="20475" i_length="963"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="20476" e_stop="20577" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.732" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20673" e_stop="20791" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21160" e_stop="21222" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.725" acc_prob="0.797">
            <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21320" e_stop="21381" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.891">
            <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228"/>
          </intron>
          <exon e_serial="11" e_score="0.971">
            <gDNA_exon_boundary e_start="21610" e_stop="22025" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14290" stop="14336"/>
              <exon start="17657" stop="17663"/>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18222" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18233" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19333"/>
              <exon start="19423" stop="19428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18667"/>
              <exon start="18782" stop="18955"/>
              <exon start="19043" stop="19258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19200" stop="19333"/>
              <exon start="19423" stop="19512"/>
              <exon start="20476" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="21777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20499" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="22025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATCTTACAATCAAACTATCAAAATCTTGTACAACTTTTCCTCAG : CTACATG : ATTTCGTACAGGCTGGACTTTGTGTTGGAGCATACCAGTAATTGTCTTTTCATTTTAGTTGAAAACTATTAGAAGTTGGATCAGCTGCCTCTTTGGGAATTACCCTTTATACCCATTACGATTGACCTTTTTAGATAAAAATATCTCCCTTACAGCTGGTGATGAATATAAACTTATAGTTCCTTCATTTTTTGATATCTTGAATGGCTGGATCTTTGTTGCCAGTGGGTAAGGCAGTCCTACGTTCCCGCCAACCTTCCAAATGTTATATGTTCAATGCTGATCTCCAGCATCCGAAGTCAATTCCAATTCTCCCTCCATATAAGAAAAGAGTCAAACAGAATAATACTTTGAACAAGTCAGTGCTCCTAAGTCCATTAGTTTGCCAATACCGGTTAAAACCAGTTTCGGCGCTTGACTCAGATGTTCCCTATCCTATTGAACAG : AGTTCAGAAGGTTTAAAGAGCAGCGAGAGCTTTAAGCAATGGGATTCATTGACTGCGAAATTTGCAGGAGCTGCAAATATTCCGTTTCTCATATTACAACTGCCTCAAATAATACTGAATGCTCGTAACCTTCTAGCAGGAAATCAAGCTGCATTATTTGCAGTTCCATGGCTG : GGGATGTTCACTGGATTACTTGGTAATTTATCTTTGCTATCATACTTTATAAAGAAGAGGGAGACGGAAGTGGTTGTTGTGCAAACTTTGGGTGTCGTGACCATTTACGTTGTGATATCACAATTAGCCATGGCTGGATCTATGCCTTTGCCTCATTATGCAGTCACTTCTGTTGTTATTGCGTGTGGTCTTGTTGTGAACTTCATGAACTACTTCCACTTGCTCAATCCCGTAATCTGGCGTTACTGGGAGGATTTCATTACTATTGCTGGCTTATCTGCGCTTCCCCAA : GTCATGTGGTCAACTTTCATCCCATATGTTCCAAATACCATCTTGCCTGGTGCTGTGGCTTTTGTTCTGGCTATCTTAGCTGTCTTTATG : TCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATG : TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG : GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG : CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG : TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGGACAAATTCTTAATAAATATAAAGTTTAAAACCATATTTGCA</gDNA_template>
            <first_frame> L  I  L  Q  S  N  Y  Q  N  L  V  Q  L  F  L  S :   Y  M  :  I  S  Y  R  L  D  F  V  L  E  H  T  S  N  C  L  F  I  L  V  E  N  Y  *  K  L  D  Q  L  P  L  W  E  L  P  F  I  P  I  T  I  D  L  F  R  *  K  Y  L  P  Y  S  W  *  *  I  *  T  Y  S  S  F  I  F  *  Y  L  E  W  L  D  L  C  C  Q  W  V  R  Q  S  Y  V  P  A  N  L  P  N  V  I  C  S  M  L  I  S  S  I  R  S  Q  F  Q  F  S  L  H  I  R  K  E  S  N  R  I  I  L  *  T  S  Q  C  S  *  V  H  *  F  A  N  T  G  *  N  Q  F  R  R  L  T  Q  M  F  P  I  L  L  N  R :   V  Q  K  V  *  R  A  A  R  A  L  S  N  G  I  H  *  L  R  N  L  Q  E  L  Q  I  F  R  F  S  Y  Y  N  C  L  K  *  Y  *  M  L  V  T  F  *  Q  E  I  K  L  H  Y  L  Q  F  H  G  W :   G  C  S  L  D  Y  L  V  I  Y  L  C  Y  H  T  L  *  R  R  G  R  R  K  W  L  L  C  K  L  W  V  S  *  P  F  T  L  *  Y  H  N  *  P  W  L  D  L  C  L  C  L  I  M  Q  S  L  L  L  L  L  R  V  V  L  L  *  T  S  *  T  T  S  T  C  S  I  P  *  S  G  V  T  G  R  I  S  L  L  L  L  A  Y  L  R  F  P  K :   S  C  G  Q  L  S  S  H  M  F  Q  I  P  S  C  L  V  L  W  L  L  F  W  L  S  *  L  S  L  C :   L  G  L  G  N  F  Q  R  R  A  S  N  L  *  D  H  Y  L  D  G  L  P  H  F  F  S  C  G  C  Q  F  H  K  C :   G  Q  T  F  *  I  Q  I  I  *  K  V  Y  Q  L  F  R  C  C  L  Q  *  L  G  M  D  S  *  F  H  E  H  S  L  L  G  I  *  C   : G  S  P  V  Q  L  G  H  A  F  F  M  D  G  E  T  L  S  A  Y  I   : A  A  K  L  *  A  G  N  F  S  W  L  Q  Q  L  P  L  *  H  G  W  :  C  S  A  S  G  E  T  H  K  Y  M  D  I  I  L  H  *  N  R  *  R  N  *  F  L  V  H  N  *  S  Y  L  S  Y  L  V  G  F  G  Y  I  F  E  M  Q  E  C  *  S  L  A  F  L  L  *  I  N  C  S  S  L  E  D  L  V  K  V  L  L  A  S  V  F  G  G  T  S  G  K  V  *  L  Q  C  Q  I  I  Q  H  M  V  Y  E  E  G  S  C  G  S  F  T  C  N  I  N  Q  *  *  S  Y  I  C  N  V  S  A  N  I  F  V  V  L  H  F  G  T  N  S  *  *  I  *  S  L  K  P  Y  L   </first_frame>
            <second_frame>  L  S  Y  N  Q  T  I  K  I  L  Y  N  F  S  S   : A  T  * :   F  R  T  G  W  T  L  C  W  S  I  P  V  I  V  F  S  F  *  L  K  T  I  R  S  W  I  S  C  L  F  G  N  Y  P  L  Y  P  L  R  L  T  F  L  D  K  N  I  S  L  T  A  G  D  E  Y  K  L  I  V  P  S  F  F  D  I  L  N  G  W  I  F  V  A  S  G  *  G  S  P  T  F  P  P  T  F  Q  M  L  Y  V  Q  C  *  S  P  A  S  E  V  N  S  N  S  P  S  I  *  E  K  S  Q  T  E  *  Y  F  E  Q  V  S  A  P  K  S  I  S  L  P  I  P  V  K  T  S  F  G  A  *  L  R  C  S  L  S  Y  *  T   : E  F  R  R  F  K  E  Q  R  E  L  *  A  M  G  F  I  D  C  E  I  C  R  S  C  K  Y  S  V  S  H  I  T  T  A  S  N  N  T  E  C  S  *  P  S  S  R  K  S  S  C  I  I  C  S  S  M  A   : G  D  V  H  W  I  T  W  *  F  I  F  A  I  I  L  Y  K  E  E  G  D  G  S  G  C  C  A  N  F  G  C  R  D  H  L  R  C  D  I  T  I  S  H  G  W  I  Y  A  F  A  S  L  C  S  H  F  C  C  Y  C  V  W  S  C  C  E  L  H  E  L  L  P  L  A  Q  S  R  N  L  A  L  L  G  G  F  H  Y  Y  C  W  L  I  C  A  S  P   : S  H  V  V  N  F  H  P  I  C  S  K  Y  H  L  A  W  C  C  G  F  C  S  G  Y  L  S  C  L  Y   : V  S  D  W  E  T  S  R  E  G  H  Q  I  C  R  I  I  I  W  M  D  C  H  T  S  F  H  V  D  A  S  F  T  N   : V  D  K  P  S  K  S  R  *  Y  K  R  F  I  S  S  F  D  V  A  C  N  D  W  E  W  T  H  D  S  T  S  T  L  Y  S  G  F  D  V  :  V  H  R  F  N  L  G  M  R  F  L  W  M  G  K  P  C  L  L  I  L  :  L  R  S  Y  K  Q  G  I  F  L  G  F  N  N  C  L  C  S  M  A  G :   V  Q  L  L  E  R  H  T  S  I  W  I  *  F  S  I  E  I  V  E  G  T  D  F  W  F  I  T  D  P  T  C  P  T  L  L  A  L  A  T  Y  L  K  C  K  N  V  K  V  W  H  F  C  Y  E  S  I  A  L  L  *  K  I  W  *  K  C  F  W  Q  V  F  L  G  V  H  Q  A  R  S  S  C  N  V  K  L  F  S  I  W  F  M  R  K  V  P  V  V  L  L  H  V  I  L  I  N  N  K  A  T  F  A  M  L  V  Q  I  Y  L  L  Y  Y  I  L  G  Q  I  L  N  K  Y  K  V  *  N  H  I  C  </second_frame>
            <third_frame>   Y  L  T  I  K  L  S  K  S  C  T  T  F  P  Q  :  L  H   : D  F  V  Q  A  G  L  C  V  G  A  Y  Q  *  L  S  F  H  F  S  *  K  L  L  E  V  G  S  A  A  S  L  G  I  T  L  Y  T  H  Y  D  *  P  F  *  I  K  I  S  P  L  Q  L  V  M  N  I  N  L  *  F  L  H  F  L  I  S  *  M  A  G  S  L  L  P  V  G  K  A  V  L  R  S  R  Q  P  S  K  C  Y  M  F  N  A  D  L  Q  H  P  K  S  I  P  I  L  P  P  Y  K  K  R  V  K  Q  N  N  T  L  N  K  S  V  L  L  S  P  L  V  C  Q  Y  R  L  K  P  V  S  A  L  D  S  D  V  P  Y  P  I  E  Q  :  S  S  E  G  L  K  S  S  E  S  F  K  Q  W  D  S  L  T  A  K  F  A  G  A  A  N  I  P  F  L  I  L  Q  L  P  Q  I  I  L  N  A  R  N  L  L  A  G  N  Q  A  A  L  F  A  V  P  W  L  :  G  M  F  T  G  L  L  G  N  L  S  L  L  S  Y  F  I  K  K  R  E  T  E  V  V  V  V  Q  T  L  G  V  V  T  I  Y  V  V  I  S  Q  L  A  M  A  G  S  M  P  L  P  H  Y  A  V  T  S  V  V  I  A  C  G  L  V  V  N  F  M  N  Y  F  H  L  L  N  P  V  I  W  R  Y  W  E  D  F  I  T  I  A  G  L  S  A  L  P  Q  :  V  M  W  S  T  F  I  P  Y  V  P  N  T  I  L  P  G  A  V  A  F  V  L  A  I  L  A  V  F  M  :  S  R  T  G  K  L  P  E  K  G  I  K  F  V  G  S  L  S  G  W  T  A  T  L  L  F  M  W  M  P  V  S  Q  M  :  W  T  N  L  L  N  P  D  N  I  K  G  L  S  A  L  S  M  L  L  A  M  I  G  N  G  L  M  I  P  R  A  L  F  T  R  D  L  M  W :   F  T  G  S  T  W  A  C  V  F  Y  G  W  G  N  L  V  C  L  Y  C :   C  E  V  I  S  R  E  F  F  L  A  S  T  T  A  F  V  A  W  L   : V  F  S  F  W  R  D  T  Q  V  Y  G  Y  N  S  P  L  K  S  L  K  E  L  I  S  G  S  *  L  I  L  L  V  L  P  C  W  L  W  L  H  I  *  N  A  R  M  L  K  F  G  I  S  A  M  N  Q  L  L  F  F  R  R  F  G  E  S  A  F  G  K  C  F  W  G  Y  I  R  Q  G  L  V  A  M  S  N  Y  S  A  Y  G  L  *  G  R  F  L  W  F  F  Y  M  *  Y  *  S  I  I  K  L  H  L  Q  C  *  C  K  Y  I  C  C  I  T  F  W  D  K  F  L  I  N  I  K  F  K  T  I  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18425" stop="18667"/>
                    <exon start="18782" stop="18955"/>
                    <exon start="19043" stop="19333"/>
                    <exon start="19423" stop="19512"/>
                    <exon start="20476" stop="20577"/>
                    <exon start="20673" stop="20791"/>
                    <exon start="21160" stop="21222"/>
                    <exon start="21320" stop="21381"/>
                    <exon start="21610" stop="21692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAGSLLPVGKAVLRSRQPSKCYMFNADLQHPKSIPILPPYKKRVKQNNTLNKSVLLSPLVCQYRLKPVSALDSDVPYPIEQSSEGLKSSESFKQWDSLTAKFAGAANIPFLILQLPQIILNARNLLAGNQAALFAVPWLGMFTGLLGNLSLLSYFIKKRETEVVVVQTLGVVTIYVVISQLAMAGSMPLPHYAVTSVVIACGLVVNFMNYFHLLNPVIWRYWEDFITIAGLSALPQVMWSTFIPYVPNTILPGAVAFVLAILAVFMSRTGKLPEKGIKFVGSLSGWTATLLFMWMPVSQMWTNLLNPDNIKGLSALSMLLAMIGNGLMIPRALFTRDLMWFTGSTWACVFYGWGNLVCLYCCEVISREFFLASTTAFVAWLVFSFWRDTQVYGYNSPLKSLKELISGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21806" stop="22012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCFWQVFLGVHQARSSCNVKLFSIWFMRKVPVVLLHVILINNKATFAMLVQIYLLYYILGQILNKYKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20404" e_stop="20577"/>
            <exon e_start="20673" e_stop="20791"/>
            <exon e_start="21160" e_stop="21222"/>
            <exon e_start="21320" e_stop="21381"/>
            <exon e_start="21610" e_stop="22025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.732" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="20404" e_stop="20577" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.732" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20578" i_stop="20672" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20673" e_stop="20791" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20792" i_stop="21159" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21160" e_stop="21222" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.725" acc_prob="0.797">
            <gDNA_intron_boundary i_start="21223" i_stop="21319" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21320" e_stop="21381" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.891">
            <gDNA_intron_boundary i_start="21382" i_stop="21609" i_length="228"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="21610" e_stop="22025" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20404" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20499" stop="20577"/>
              <exon start="20673" stop="20791"/>
              <exon start="21160" stop="21222"/>
              <exon start="21320" stop="21381"/>
              <exon start="21610" stop="22025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGTTATGCTTGAGAAAATGAGAACATGGATCTGAATTATTCTGAATTTCAAGCTACTGTTATTTACAGTCTCGGACTGGGAAACTTCCAGAGAAGGGCATCAAATTTGTAGGATCATTATCTGGATGGACTGCCACACTTCTTTTCATGTGGATGCCAGTTTCACAAATG : TGGACAAACCTTCTAAATCCAGATAATATAAAAGGTTTATCAGCTCTTTCGATGTTGCTTGCAATGATTGGGAATGGACTCATGATTCCACGAGCACTCTTTACTCGGGATTTGATGTG : GTTCACCGGTTCAACTTGGGCATGCGTTTTTTATGGATGGGGAAACCTTGTCTGCTTATATTG : CTGCGAAGTTATAAGCAGGGAATTTTTCTTGGCTTCAACAACTGCCTTTGTAGCATGGCTGG : TGTTCAGCTTCTGGAGAGACACACAAGTATATGGATATAATTCTCCATTGAAATCGTTGAAGGAACTGATTTCTGGTTCATAACTGATCCTACTTGTCCTACCTTGTTGGCTTTGGCTACATATTTGAAATGCAAGAATGTTAAAGTTTGGCATTTCTGCTATGAATCAATTGCTCTTCTTTAGAAGATTTGGTGAAAGTGCTTTTGGCAAGTGTTTTTGGGGGTACATCAGGCAAGGTCTAGTTGCAATGTCAAATTATTCAGCATATGGTTTATGAGGAAGGTTCCTGTGGTTCTTTTACATGTAATATTAATCAATAATAAAGCTACATTTGCAATGTTAGTGCAAATATATTTGTTGTATTACATTTTGGGACAAATTCTTAATAAATATAAAGTTTAAAACCATATTTGCA</gDNA_template>
            <first_frame> I  L  L  C  L  R  K  *  E  H  G  S  E  L  F  *  I  S  S  Y  C  Y  L  Q  S  R  T  G  K  L  P  E  K  G  I  K  F  V  G  S  L  S  G  W  T  A  T  L  L  F  M  W  M  P  V  S  Q  M  :  W  T  N  L  L  N  P  D  N  I  K  G  L  S  A  L  S  M  L  L  A  M  I  G  N  G  L  M  I  P  R  A  L  F  T  R  D  L  M  W :   F  T  G  S  T  W  A  C  V  F  Y  G  W  G  N  L  V  C  L  Y  C :   C  E  V  I  S  R  E  F  F  L  A  S  T  T  A  F  V  A  W  L   : V  F  S  F  W  R  D  T  Q  V  Y  G  Y  N  S  P  L  K  S  L  K  E  L  I  S  G  S  *  L  I  L  L  V  L  P  C  W  L  W  L  H  I  *  N  A  R  M  L  K  F  G  I  S  A  M  N  Q  L  L  F  F  R  R  F  G  E  S  A  F  G  K  C  F  W  G  Y  I  R  Q  G  L  V  A  M  S  N  Y  S  A  Y  G  L  *  G  R  F  L  W  F  F  Y  M  *  Y  *  S  I  I  K  L  H  L  Q  C  *  C  K  Y  I  C  C  I  T  F  W  D  K  F  L  I  N  I  K  F  K  T  I  F  A </first_frame>
            <second_frame>  F  C  Y  A  *  E  N  E  N  M  D  L  N  Y  S  E  F  Q  A  T  V  I  Y  S  L  G  L  G  N  F  Q  R  R  A  S  N  L  *  D  H  Y  L  D  G  L  P  H  F  F  S  C  G  C  Q  F  H  K  C :   G  Q  T  F  *  I  Q  I  I  *  K  V  Y  Q  L  F  R  C  C  L  Q  *  L  G  M  D  S  *  F  H  E  H  S  L  L  G  I  *  C   : G  S  P  V  Q  L  G  H  A  F  F  M  D  G  E  T  L  S  A  Y  I   : A  A  K  L  *  A  G  N  F  S  W  L  Q  Q  L  P  L  *  H  G  W  :  C  S  A  S  G  E  T  H  K  Y  M  D  I  I  L  H  *  N  R  *  R  N  *  F  L  V  H  N  *  S  Y  L  S  Y  L  V  G  F  G  Y  I  F  E  M  Q  E  C  *  S  L  A  F  L  L  *  I  N  C  S  S  L  E  D  L  V  K  V  L  L  A  S  V  F  G  G  T  S  G  K  V  *  L  Q  C  Q  I  I  Q  H  M  V  Y  E  E  G  S  C  G  S  F  T  C  N  I  N  Q  *  *  S  Y  I  C  N  V  S  A  N  I  F  V  V  L  H  F  G  T  N  S  *  *  I  *  S  L  K  P  Y  L   </second_frame>
            <third_frame>   F  V  M  L  E  K  M  R  T  W  I  *  I  I  L  N  F  K  L  L  L  F  T  V  S  D  W  E  T  S  R  E  G  H  Q  I  C  R  I  I  I  W  M  D  C  H  T  S  F  H  V  D  A  S  F  T  N   : V  D  K  P  S  K  S  R  *  Y  K  R  F  I  S  S  F  D  V  A  C  N  D  W  E  W  T  H  D  S  T  S  T  L  Y  S  G  F  D  V  :  V  H  R  F  N  L  G  M  R  F  L  W  M  G  K  P  C  L  L  I  L  :  L  R  S  Y  K  Q  G  I  F  L  G  F  N  N  C  L  C  S  M  A  G :   V  Q  L  L  E  R  H  T  S  I  W  I  *  F  S  I  E  I  V  E  G  T  D  F  W  F  I  T  D  P  T  C  P  T  L  L  A  L  A  T  Y  L  K  C  K  N  V  K  V  W  H  F  C  Y  E  S  I  A  L  L  *  K  I  W  *  K  C  F  W  Q  V  F  L  G  V  H  Q  A  R  S  S  C  N  V  K  L  F  S  I  W  F  M  R  K  V  P  V  V  L  L  H  V  I  L  I  N  N  K  A  T  F  A  M  L  V  Q  I  Y  L  L  Y  Y  I  L  G  Q  I  L  N  K  Y  K  V  *  N  H  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20452" stop="20577"/>
                    <exon start="20673" stop="20791"/>
                    <exon start="21160" stop="21222"/>
                    <exon start="21320" stop="21381"/>
                    <exon start="21610" stop="21692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSYCYLQSRTGKLPEKGIKFVGSLSGWTATLLFMWMPVSQMWTNLLNPDNIKGLSALSMLLAMIGNGLMIPRALFTRDLMWFTGSTWACVFYGWGNLVCLYCCEVISREFFLASTTAFVAWLVFSFWRDTQVYGYNSPLKSLKELISGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21806" stop="22012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCFWQVFLGVHQARSSCNVKLFSIWFMRKVPVVLLHVILINNKATFAMLVQIYLLYYILGQILNKYKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22020" PGL_stop="21608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22020" e_stop="21608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="22020" e_stop="21608" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22020" stop="21608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGGTTTTAAACTTTATATTTATTAAGAATTTGTCCCAAAATGTAATACAACAAATATATTTGCACTAACATTGCAAATGTAGCTTTATTATTGATTAATATTACATGTAAAAGAACCACAGGAACCTTCCTCATAAACCATATGCTGAATAATTTGACATTGCAACTAGACCTTGCCTGATGTACCCCCAAAAACACTTGCCAAAAGCACTTTCACCAAATCTTCTAAAGAAGAGCAATTGATTCATAGCAGAAATGCCAAACTTTAACATTCTTGCATTTCAAATATGTAGCCAAAGCCAACAAGGTAGGACAAGTAGGATCAGTTATGAACCAGAAATCAGTTCCTTCAACGATTTCAATGGAGAATTATATCCATATACTTGTGTGTCTCTCCAGAAGCTGAACACT</gDNA_template>
            <first_frame> I  W  F  *  T  L  Y  L  L  R  I  C  P  K  M  *  Y  N  K  Y  I  C  T  N  I  A  N  V  A  L  L  L  I  N  I  T  C  K  R  T  T  G  T  F  L  I  N  H  M  L  N  N  L  T  L  Q  L  D  L  A  *  C  T  P  K  N  T  C  Q  K  H  F  H  Q  I  F  *  R  R  A  I  D  S  *  Q  K  C  Q  T  L  T  F  L  H  F  K  Y  V  A  K  A  N  K  V  G  Q  V  G  S  V  M  N  Q  K  S  V  P  S  T  I  S  M  E  N  Y  I  H  I  L  V  C  L  S  R  S  *  T   </first_frame>
            <second_frame>  Y  G  F  K  L  Y  I  Y  *  E  F  V  P  K  C  N  T  T  N  I  F  A  L  T  L  Q  M  *  L  Y  Y  *  L  I  L  H  V  K  E  P  Q  E  P  S  S  *  T  I  C  *  I  I  *  H  C  N  *  T  L  P  D  V  P  P  K  T  L  A  K  S  T  F  T  K  S  S  K  E  E  Q  L  I  H  S  R  N  A  K  L  *  H  S  C  I  S  N  M  *  P  K  P  T  R  *  D  K  *  D  Q  L  *  T  R  N  Q  F  L  Q  R  F  Q  W  R  I  I  S  I  Y  L  C  V  S  P  E  A  E  H  </second_frame>
            <third_frame>   M  V  L  N  F  I  F  I  K  N  L  S  Q  N  V  I  Q  Q  I  Y  L  H  *  H  C  K  C  S  F  I  I  D  *  Y  Y  M  *  K  N  H  R  N  L  P  H  K  P  Y  A  E  *  F  D  I  A  T  R  P  C  L  M  Y  P  Q  K  H  L  P  K  A  L  S  P  N  L  L  K  K  S  N  *  F  I  A  E  M  P  N  F  N  I  L  A  F  Q  I  C  S  Q  S  Q  Q  G  R  T  S  R  I  S  Y  E  P  E  I  S  S  F  N  D  F  N  G  E  L  Y  P  Y  T  C  V  S  L  Q  K  L  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0208L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22814" PGL_stop="22293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22814" e_stop="22702"/>
            <exon e_start="22614" e_stop="22293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22814" e_stop="22702" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22701" i_stop="22615" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22614" e_stop="22293" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22814" stop="22702"/>
              <exon start="22614" stop="22293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACTCATCCCATGAACCTGTTGAATGAGAGGACACTCAAGGGCACCTTCTTTGGTAACTACAAGCCCAAAACTGATCTCCCATCTGTGGTGGCCAAGTACATGAATAAG : GAACTAGAGCTGGAGAAGTTCATCACCCATCAAGTACCATTTTCAGAGATCAACAAAGCATTTGACATTATGCTGAAAGGGGAAGGCCTCCGTTGCATGATCACTATGGGACGTTGAAATATGCTAAATAGGGAAAATAGGACAGTATATTACCTAGTAATATAGAGCTTGAATGTAATAAAACAAACGGTATTTTAATGGGTAAAATAATGTTAAAAGTAGAGTTTGGAGGCAAAGTATATGTTTTCTAAAAGGCCTCCTGAGTTTGCTCAACATATTGTGTAATAATATTTGCATATTTTGAAAGACTTTTTGAGTTTTG</gDNA_template>
            <first_frame> S  K  L  I  P  *  T  C  *  M  R  G  H  S  R  A  P  S  L  V  T  T  S  P  K  L  I  S  H  L  W  W  P  S  T  *  I  R :   N  *  S  W  R  S  S  S  P  I  K  Y  H  F  Q  R  S  T  K  H  L  T  L  C  *  K  G  K  A  S  V  A  *  S  L  W  D  V  E  I  C  *  I  G  K  I  G  Q  Y  I  T  *  *  Y  R  A  *  M  *  *  N  K  R  Y  F  N  G  *  N  N  V  K  S  R  V  W  R  Q  S  I  C  F  L  K  G  L  L  S  L  L  N  I  L  C  N  N  I  C  I  F  *  K  T  F  *  V  L </first_frame>
            <second_frame>  Q  N  S  S  H  E  P  V  E  *  E  D  T  Q  G  H  L  L  W  *  L  Q  A  Q  N  *  S  P  I  C  G  G  Q  V  H  E  *   : G  T  R  A  G  E  V  H  H  P  S  S  T  I  F  R  D  Q  Q  S  I  *  H  Y  A  E  R  G  R  P  P  L  H  D  H  Y  G  T  L  K  Y  A  K  *  G  K  *  D  S  I  L  P  S  N  I  E  L  E  C  N  K  T  N  G  I  L  M  G  K  I  M  L  K  V  E  F  G  G  K  V  Y  V  F  *  K  A  S  *  V  C  S  T  Y  C  V  I  I  F  A  Y  F  E  R  L  F  E  F   </second_frame>
            <third_frame>   K  T  H  P  M  N  L  L  N  E  R  T  L  K  G  T  F  F  G  N  Y  K  P  K  T  D  L  P  S  V  V  A  K  Y  M  N  K  :  E  L  E  L  E  K  F  I  T  H  Q  V  P  F  S  E  I  N  K  A  F  D  I  M  L  K  G  E  G  L  R  C  M  I  T  M  G  R  *  N  M  L  N  R  E  N  R  T  V  Y  Y  L  V  I  *  S  L  N  V  I  K  Q  T  V  F  *  W  V  K  *  C  *  K  *  S  L  E  A  K  Y  M  F  S  K  R  P  P  E  F  A  Q  H  I  V  *  *  Y  L  H  I  L  K  D  F  L  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22812" stop="22702"/>
                    <exon start="22614" stop="22498"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTHPMNLLNERTLKGTFFGNYKPKTDLPSVVAKYMNKELELEKFITHQVPFSEINKAFDIMLKGEGLRCMITMGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25332" PGL_stop="22850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25332" e_stop="25289"/>
            <exon e_start="25112" e_stop="24976"/>
            <exon e_start="24064" e_stop="24018"/>
            <exon e_start="23937" e_stop="23612"/>
            <exon e_start="23532" e_stop="23450"/>
            <exon e_start="23363" e_stop="23288"/>
            <exon e_start="23206" e_stop="23145"/>
            <exon e_start="23049" e_stop="22954"/>
            <exon e_start="22863" e_stop="22850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="0.990"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25332" e_stop="25289" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25288" i_stop="25113" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25112" e_stop="24976" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24975" i_stop="24065" i_length="911"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24064" e_stop="24018" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24017" i_stop="23938" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23937" e_stop="23612" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.753">
            <gDNA_intron_boundary i_start="23611" i_stop="23533" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23532" e_stop="23450" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.835" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23449" i_stop="23364" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23363" e_stop="23288" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23287" i_stop="23207" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="23206" e_stop="23145" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.872">
            <gDNA_intron_boundary i_start="23144" i_stop="23050" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="23049" e_stop="22954" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22953" i_stop="22864" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="0.929">
            <gDNA_exon_boundary e_start="22863" e_stop="22850" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25332" stop="25289"/>
              <exon start="25112" stop="24976"/>
              <exon start="24064" stop="24018"/>
              <exon start="23937" stop="23612"/>
              <exon start="23532" stop="23450"/>
              <exon start="23363" stop="23288"/>
              <exon start="23206" stop="23145"/>
              <exon start="23049" stop="22954"/>
              <exon start="22863" stop="22850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706172" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAACAACAATGAATACTGCTGGTCAGGTTATTCGCTGCAAAG : CTGCGGTTGCATGGGAAGCTGGAAAACCTTTGGTAATTGAAGAAGTGGATGTTGCACCTCCACAGAAACATGAAGTTCGTCTCAAGATTCTCTTCACCTCATTGTGCCACACTGATGTTTACTTCTGGGAAGCTAAG : GGACAAACACCTTTGTTTCCTCGAATTTTCGGACATGAAGCTGGAGG : AATTGTGGAGAGTGTAGGTGAAGGTGTTACAGATCTTCAACCAGGAGATCATGTTCTTCCTGTGTTTACCGGAGAATGTCAGCAATGCCGTCACTGTAAATCATCAGAAAGCAACATGTGTGAACTCCTAAGAATAAATACAGACAGGGGAGTTATGATTAGTGATGGTCAAACAAGATTTTCCAAGGATGGAAAGCCGATATACCACTTTGTTGGAACTTCCACTTTTAGTGAATACACTGTTGCTCATTCTGGTTGCGTCACCAAGATCGATCCACAGGCACCACTTGACAAAGTTTGTGTCCTGAGTTGCGGAATATCAACAG : GACTTGGTGCGACTCTGAATGTTGCCAAACCTACTAGAGGTTCTTATGTGGCTATTTTTGGTTTGGGAGCTGTTGGCCTTGCT : GCTGCTGAAGGAGCTAGGCTAGCTGGGGCTTCTAGGATCATTGGTATTGATTTGAATCCCAGCAGATTCAATGATG : CCAAGAAATTCGGTGTCACAGAGTTTGTGAATCCAAAAGATCATGATAAGCCTGTTCAGGAG : GTGATCGCTGAGATGACCAATGGAGGTGTTGACCGGAGTGTCGAGTGTACTGGAAATGTTAACGCTATGATCTCTGCTTTTGAATGTGTTCATGAT : GGTTGGGGTGTGGC</gDNA_template>
            <first_frame> I  N  N  N  E  Y  C  W  S  G  Y  S  L  Q  S :   C  G  C  M  G  S  W  K  T  F  G  N  *  R  S  G  C  C  T  S  T  E  T  *  S  S  S  Q  D  S  L  H  L  I  V  P  H  *  C  L  L  L  G  S  *   : G  T  N  T  F  V  S  S  N  F  R  T  *  S  W  R  :  N  C  G  E  C  R  *  R  C  Y  R  S  S  T  R  R  S  C  S  S  C  V  Y  R  R  M  S  A  M  P  S  L  *  I  I  R  K  Q  H  V  *  T  P  K  N  K  Y  R  Q  G  S  Y  D  *  *  W  S  N  K  I  F  Q  G  W  K  A  D  I  P  L  C  W  N  F  H  F  *  *  I  H  C  C  S  F  W  L  R  H  Q  D  R  S  T  G  T  T  *  Q  S  L  C  P  E  L  R  N  I  N  R :   T  W  C  D  S  E  C  C  Q  T  Y  *  R  F  L  C  G  Y  F  W  F  G  S  C  W  P  C   : C  C  *  R  S  *  A  S  W  G  F  *  D  H  W  Y  *  F  E  S  Q  Q  I  Q  *  C :   Q  E  I  R  C  H  R  V  C  E  S  K  R  S  *  *  A  C  S  G   : G  D  R  *  D  D  Q  W  R  C  *  P  E  C  R  V  Y  W  K  C  *  R  Y  D  L  C  F  *  M  C  S  *   : W  L  G  C  G </first_frame>
            <second_frame>  S  T  T  M  N  T  A  G  Q  V  I  R  C  K   : A  A  V  A  W  E  A  G  K  P  L  V  I  E  E  V  D  V  A  P  P  Q  K  H  E  V  R  L  K  I  L  F  T  S  L  C  H  T  D  V  Y  F  W  E  A  K  :  G  Q  T  P  L  F  P  R  I  F  G  H  E  A  G  G :   I  V  E  S  V  G  E  G  V  T  D  L  Q  P  G  D  H  V  L  P  V  F  T  G  E  C  Q  Q  C  R  H  C  K  S  S  E  S  N  M  C  E  L  L  R  I  N  T  D  R  G  V  M  I  S  D  G  Q  T  R  F  S  K  D  G  K  P  I  Y  H  F  V  G  T  S  T  F  S  E  Y  T  V  A  H  S  G  C  V  T  K  I  D  P  Q  A  P  L  D  K  V  C  V  L  S  C  G  I  S  T   : G  L  G  A  T  L  N  V  A  K  P  T  R  G  S  Y  V  A  I  F  G  L  G  A  V  G  L  A  :  A  A  E  G  A  R  L  A  G  A  S  R  I  I  G  I  D  L  N  P  S  R  F  N  D   : A  K  K  F  G  V  T  E  F  V  N  P  K  D  H  D  K  P  V  Q  E  :  V  I  A  E  M  T  N  G  G  V  D  R  S  V  E  C  T  G  N  V  N  A  M  I  S  A  F  E  C  V  H  D  :  G  W  G  V   </second_frame>
            <third_frame>   Q  Q  Q  *  I  L  L  V  R  L  F  A  A  K  :  L  R  L  H  G  K  L  E  N  L  W  *  L  K  K  W  M  L  H  L  H  R  N  M  K  F  V  S  R  F  S  S  P  H  C  A  T  L  M  F  T  S  G  K  L  R :   D  K  H  L  C  F  L  E  F  S  D  M  K  L  E   : E  L  W  R  V  *  V  K  V  L  Q  I  F  N  Q  E  I  M  F  F  L  C  L  P  E  N  V  S  N  A  V  T  V  N  H  Q  K  A  T  C  V  N  S  *  E  *  I  Q  T  G  E  L  *  L  V  M  V  K  Q  D  F  P  R  M  E  S  R  Y  T  T  L  L  E  L  P  L  L  V  N  T  L  L  L  I  L  V  A  S  P  R  S  I  H  R  H  H  L  T  K  F  V  S  *  V  A  E  Y  Q  Q  :  D  L  V  R  L  *  M  L  P  N  L  L  E  V  L  M  W  L  F  L  V  W  E  L  L  A  L  L :   L  L  K  E  L  G  *  L  G  L  L  G  S  L  V  L  I  *  I  P  A  D  S  M  M  :  P  R  N  S  V  S  Q  S  L  *  I  Q  K  I  M  I  S  L  F  R  R :   *  S  L  R  *  P  M  E  V  L  T  G  V  S  S  V  L  E  M  L  T  L  *  S  L  L  L  N  V  F  M  M :   V  G  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25331" stop="25289"/>
                    <exon start="25112" stop="24976"/>
                    <exon start="24064" stop="24018"/>
                    <exon start="23937" stop="23612"/>
                    <exon start="23532" stop="23450"/>
                    <exon start="23363" stop="23288"/>
                    <exon start="23206" stop="23145"/>
                    <exon start="23049" stop="22954"/>
                    <exon start="22863" stop="22852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTMNTAGQVIRCKAAVAWEAGKPLVIEEVDVAPPQKHEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECQQCRHCKSSESNMCELLRINTDRGVMISDGQTRFSKDGKPIYHFVGTSTFSEYTVAHSGCVTKIDPQAPLDKVCVLSCGISTGLGATLNVAKPTRGSYVAIFGLGAVGLAAAEGARLAGASRIIGIDLNPSRFNDAKKFGVTEFVNPKDHDKPVQEVIAEMTNGGVDRSVECTGNVNAMISAFECVHDGWGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35183" PGL_stop="30009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35183" e_stop="35175"/>
            <exon e_start="35101" e_stop="35007"/>
            <exon e_start="34912" e_stop="34843"/>
            <exon e_start="34361" e_stop="34304"/>
            <exon e_start="32337" e_stop="32220"/>
            <exon e_start="32121" e_stop="31978"/>
            <exon e_start="31411" e_stop="31311"/>
            <exon e_start="30146" e_stop="30009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.504" acc_prob="0.990" e_score="0.989"/>
          <exon-intron don_prob="0.515" acc_prob="0.937" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.959" e_score="0.914"/>
          <exon-intron don_prob="0.856" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.754" acc_prob="0.940" e_score="0.993"/>
          <exon-intron don_prob="0.945" acc_prob="0.932" e_score="0.960"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35183" e_stop="35175" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35174" i_stop="35102" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="35101" e_stop="35007" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.504" acc_prob="0.990">
            <gDNA_intron_boundary i_start="35006" i_stop="34913" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="34912" e_stop="34843" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.515" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34842" i_stop="34362" i_length="481"/>
          </intron>
          <exon e_serial="4" e_score="0.914">
            <gDNA_exon_boundary e_start="34361" e_stop="34304" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34303" i_stop="32338" i_length="1966"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="32337" e_stop="32220" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.856" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32219" i_stop="32122" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="32121" e_stop="31978" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.754" acc_prob="0.940">
            <gDNA_intron_boundary i_start="31977" i_stop="31412" i_length="566"/>
          </intron>
          <exon e_serial="7" e_score="0.960">
            <gDNA_exon_boundary e_start="31411" e_stop="31311" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.945" acc_prob="0.932">
            <gDNA_intron_boundary i_start="31310" i_stop="30147" i_length="1164"/>
          </intron>
          <exon e_serial="8" e_score="0.978">
            <gDNA_exon_boundary e_start="30146" e_stop="30009" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35183" stop="35175"/>
              <exon start="35101" stop="35007"/>
              <exon start="34912" stop="34843"/>
              <exon start="34361" stop="34304"/>
              <exon start="32337" stop="32220"/>
              <exon start="32121" stop="31978"/>
              <exon start="31411" stop="31311"/>
              <exon start="30146" stop="30103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34898" stop="34843"/>
              <exon start="34361" stop="34304"/>
              <exon start="32337" stop="32220"/>
              <exon start="32121" stop="31978"/>
              <exon start="31411" stop="31311"/>
              <exon start="30146" stop="30009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTTCAG : GGAACCATCTAGATATGGTTTGGGAAGTGAAACACCATCACATCCTTCAAGGACTCCACTGCACCCATTTATGACACCTATGAGAGATCCTGGAG : CAACACCTATCCATGATGGCATGAGGACGCCAATGCGTGACAGAGCATGGAATCCAATGAGTCCAACTAG : GGGGGGTGATTGGGAAGATGGAAACCCTGCTTCCTGGGGGTCAAGTCCGCAATATCAG : CCATCTAGTCCTCGTTCAAGGGCGTATGAAGCACCTACTCCTGGTTCTGGTTGGACTAATACACCTAGCGGTAATTACAGTGATGCTGGTACCCCAAGAGACAATGGTTCTGCATATG : CTAATGCTCCAAGTCCTTACTTGCCATCAACTCCTGGTGGACAACCACCAATGACACCAAGTTCAGCATATATACCTGGTACTCCTGGTGGGCAGCCAATGACTCCTGGAAGTGGTGGGCTGGATATGATGTCACCTATAGGAG : GTGGGGATACAGAAGGTCCTTGGCTCTTGCCTGATATCTTGGTCAATGTACGGAAGTCCAATGATGATACTGTCATCGGAGTTGTCCATGAGGTGTTAGCG : GATGGTTCCTGTAGTGTTGGTCTTGGATCAAGCGGCAATGGTGACACTATCATTGCGCACCCAACTGAAATTGATATAATTGTACCAAAGAAGTCTGATAAAATCAAGATAATGGGTGGTCCTCAACGTGGTGCAACC</gDNA_template>
            <first_frame> A  V  Q  :  G  T  I  *  I  W  F  G  K  *  N  T  I  T  S  F  K  D  S  T  A  P  I  Y  D  T  Y  E  R  S  W  S :   N  T  Y  P  *  W  H  E  D  A  N  A  *  Q  S  M  E  S  N  E  S  N  *  :  G  G  *  L  G  R  W  K  P  C  F  L  G  V  K  S  A  I  S   : A  I  *  S  S  F  K  G  V  *  S  T  Y  S  W  F  W  L  D  *  Y  T  *  R  *  L  Q  *  C  W  Y  P  K  R  Q  W  F  C  I  C :   *  C  S  K  S  L  L  A  I  N  S  W  W  T  T  T  N  D  T  K  F  S  I  Y  T  W  Y  S  W  W  A  A  N  D  S  W  K  W  W  A  G  Y  D  V  T  Y  R  R :   W  G  Y  R  R  S  L  A  L  A  *  Y  L  G  Q  C  T  E  V  Q  *  *  Y  C  H  R  S  C  P  *  G  V  S   : G  W  F  L  *  C  W  S  W  I  K  R  Q  W  *  H  Y  H  C  A  P  N  *  N  *  Y  N  C  T  K  E  V  *  *  N  Q  D  N  G  W  S  S  T  W  C  N  </first_frame>
            <second_frame>  P  F  R :   E  P  S  R  Y  G  L  G  S  E  T  P  S  H  P  S  R  T  P  L  H  P  F  M  T  P  M  R  D  P  G   : A  T  P  I  H  D  G  M  R  T  P  M  R  D  R  A  W  N  P  M  S  P  T  R :   G  G  D  W  E  D  G  N  P  A  S  W  G  S  S  P  Q  Y  Q  :  P  S  S  P  R  S  R  A  Y  E  A  P  T  P  G  S  G  W  T  N  T  P  S  G  N  Y  S  D  A  G  T  P  R  D  N  G  S  A  Y   : A  N  A  P  S  P  Y  L  P  S  T  P  G  G  Q  P  P  M  T  P  S  S  A  Y  I  P  G  T  P  G  G  Q  P  M  T  P  G  S  G  G  L  D  M  M  S  P  I  G   : G  G  D  T  E  G  P  W  L  L  P  D  I  L  V  N  V  R  K  S  N  D  D  T  V  I  G  V  V  H  E  V  L  A  :  D  G  S  C  S  V  G  L  G  S  S  G  N  G  D  T  I  I  A  H  P  T  E  I  D  I  I  V  P  K  K  S  D  K  I  K  I  M  G  G  P  Q  R  G  A  T </second_frame>
            <third_frame>   R  S   : G  N  H  L  D  M  V  W  E  V  K  H  H  H  I  L  Q  G  L  H  C  T  H  L  *  H  L  *  E  I  L  E  :  Q  H  L  S  M  M  A  *  G  R  Q  C  V  T  E  H  G  I  Q  *  V  Q  L   : G  G  V  I  G  K  M  E  T  L  L  P  G  G  Q  V  R  N  I  S :   H  L  V  L  V  Q  G  R  M  K  H  L  L  L  V  L  V  G  L  I  H  L  A  V  I  T  V  M  L  V  P  Q  E  T  M  V  L  H  M  :  L  M  L  Q  V  L  T  C  H  Q  L  L  V  D  N  H  Q  *  H  Q  V  Q  H  I  Y  L  V  L  L  V  G  S  Q  *  L  L  E  V  V  G  W  I  *  C  H  L  *  E  :  V  G  I  Q  K  V  L  G  S  C  L  I  S  W  S  M  Y  G  S  P  M  M  I  L  S  S  E  L  S  M  R  C  *  R :   M  V  P  V  V  L  V  L  D  Q  A  A  M  V  T  L  S  L  R  T  Q  L  K  L  I  *  L  Y  Q  R  S  L  I  K  S  R  *  W  V  V  L  N  V  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35182" stop="35175"/>
                    <exon start="35101" stop="35007"/>
                    <exon start="34912" stop="34843"/>
                    <exon start="34361" stop="34304"/>
                    <exon start="32337" stop="32220"/>
                    <exon start="32121" stop="31978"/>
                    <exon start="31411" stop="31311"/>
                    <exon start="30146" stop="30009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFREPSRYGLGSETPSHPSRTPLHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPTRGGDWEDGNPASWGSSPQYQPSSPRSRAYEAPTPGSGWTNTPSGNYSDAGTPRDNGSAYANAPSPYLPSTPGGQPPMTPSSAYIPGTPGGQPMTPGSGGLDMMSPIGGGDTEGPWLLPDILVNVRKSNDDTVIGVVHEVLADGSCSVGLGSSGNGDTIIAHPTEIDIIVPKKSDKIKIMGGPQRGAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37909" PGL_stop="36641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37909" e_stop="37868"/>
            <exon e_start="37592" e_stop="37522"/>
            <exon e_start="37433" e_stop="37073"/>
            <exon e_start="36978" e_stop="36826"/>
            <exon e_start="36735" e_stop="36641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="0.997"/>
          <exon-intron don_prob="0.746" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37909" e_stop="37868" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37867" i_stop="37593" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37592" e_stop="37522" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37521" i_stop="37434" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="37433" e_stop="37073" e_length="361"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="37072" i_stop="36979" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36978" e_stop="36826" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.746" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36825" i_stop="36736" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36735" e_stop="36641" e_length="95"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37909" stop="37868"/>
              <exon start="37592" stop="37522"/>
              <exon start="37433" stop="37073"/>
              <exon start="36978" stop="36826"/>
              <exon start="36735" stop="36641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATCCCAAGGATTGATTTACAGGCTCTTGCGAACAAGTTG : GAAGGGAGGGAAGCTCCAAAGAAAAAGGCATTTATTCCTCCACCACGCTTTATGAATATCGATGAAGCTAG : AGAGATGAACCTACGTGTGGAACGTAGGCGAGACCCGATGTCAGGTGACTATTTTGAGAATATTGGAGGTATGATGTTCAAAGATGGTTTCTTGTATAAGACAGTGTCAATGAAATCAATCAGGACCCTGAATATACAGCCAACTTTTGATGAACTTGAGAAATTCCGGCAAACTGGTGAGGGTGGGGATGGTGATATGGCTAGTCTATCTACTTTGTTTGCAAATAGGAAAAAAGGTCATTTTATGAAGGGTGACCGCGTTATTGTGGTGAAGGGGGATCTCAGAAACTTGAAAGGCCATGTTGAGAAAGTCGAAGAAGATACTGTTCATATCAGACCAAATCAGAAGGACCTTCCTTTG : ACTTTGGCTTTTAGTGACAAAGAGCTATGCAAGTACTTTGATCTTGGAAATCACGTGAAAGTAGTATCTGGTTCATCTGAAGGTGCAACCGGTATGGTTGTCTCTGTTCAGGGACATGTGGTTAACCTGGTATCTGATACAACAAAGGAGCTT : CTCCGTGTATTTGCCGATAATGTTGTTGAGAGTTCTGAAGTAACATCTGGTCTCACTCGTATTGGGGAATATGAGCTCCATGATCTTGTAATTCT</gDNA_template>
            <first_frame> L  I  P  R  I  D  L  Q  A  L  A  N  K  L  :  E  G  R  E  A  P  K  K  K  A  F  I  P  P  P  R  F  M  N  I  D  E  A  R :   E  M  N  L  R  V  E  R  R  R  D  P  M  S  G  D  Y  F  E  N  I  G  G  M  M  F  K  D  G  F  L  Y  K  T  V  S  M  K  S  I  R  T  L  N  I  Q  P  T  F  D  E  L  E  K  F  R  Q  T  G  E  G  G  D  G  D  M  A  S  L  S  T  L  F  A  N  R  K  K  G  H  F  M  K  G  D  R  V  I  V  V  K  G  D  L  R  N  L  K  G  H  V  E  K  V  E  E  D  T  V  H  I  R  P  N  Q  K  D  L  P  L  :  T  L  A  F  S  D  K  E  L  C  K  Y  F  D  L  G  N  H  V  K  V  V  S  G  S  S  E  G  A  T  G  M  V  V  S  V  Q  G  H  V  V  N  L  V  S  D  T  T  K  E  L  :  L  R  V  F  A  D  N  V  V  E  S  S  E  V  T  S  G  L  T  R  I  G  E  Y  E  L  H  D  L  V  I   </first_frame>
            <second_frame>  *  S  Q  G  L  I  Y  R  L  L  R  T  S  W :   K  G  G  K  L  Q  R  K  R  H  L  F  L  H  H  A  L  *  I  S  M  K  L   : E  R  *  T  Y  V  W  N  V  G  E  T  R  C  Q  V  T  I  L  R  I  L  E  V  *  C  S  K  M  V  S  C  I  R  Q  C  Q  *  N  Q  S  G  P  *  I  Y  S  Q  L  L  M  N  L  R  N  S  G  K  L  V  R  V  G  M  V  I  W  L  V  Y  L  L  C  L  Q  I  G  K  K  V  I  L  *  R  V  T  A  L  L  W  *  R  G  I  S  E  T  *  K  A  M  L  R  K  S  K  K  I  L  F  I  S  D  Q  I  R  R  T  F  L  * :   L  W  L  L  V  T  K  S  Y  A  S  T  L  I  L  E  I  T  *  K  *  Y  L  V  H  L  K  V  Q  P  V  W  L  S  L  F  R  D  M  W  L  T  W  Y  L  I  Q  Q  R  S  F :   S  V  Y  L  P  I  M  L  L  R  V  L  K  *  H  L  V  S  L  V  L  G  N  M  S  S  M  I  L  *  F  </second_frame>
            <third_frame>   N  P  K  D  *  F  T  G  S  C  E  Q  V   : G  R  E  G  S  S  K  E  K  G  I  Y  S  S  T  T  L  Y  E  Y  R  *  S  *  :  R  D  E  P  T  C  G  T  *  A  R  P  D  V  R  *  L  F  *  E  Y  W  R  Y  D  V  Q  R  W  F  L  V  *  D  S  V  N  E  I  N  Q  D  P  E  Y  T  A  N  F  *  *  T  *  E  I  P  A  N  W  *  G  W  G  W  *  Y  G  *  S  I  Y  F  V  C  K  *  E  K  R  S  F  Y  E  G  *  P  R  Y  C  G  E  G  G  S  Q  K  L  E  R  P  C  *  E  S  R  R  R  Y  C  S  Y  Q  T  K  S  E  G  P  S  F   : D  F  G  F  *  *  Q  R  A  M  Q  V  L  *  S  W  K  S  R  E  S  S  I  W  F  I  *  R  C  N  R  Y  G  C  L  C  S  G  T  C  G  *  P  G  I  *  Y  N  K  G  A   : S  P  C  I  C  R  *  C  C  *  E  F  *  S  N  I  W  S  H  S  Y  W  G  I  *  A  P  *  S  C  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37909" stop="37868"/>
                    <exon start="37592" stop="37522"/>
                    <exon start="37433" stop="37073"/>
                    <exon start="36978" stop="36826"/>
                    <exon start="36735" stop="36643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIPRIDLQALANKLEGREAPKKKAFIPPPRFMNIDEAREMNLRVERRRDPMSGDYFENIGGMMFKDGFLYKTVSMKSIRTLNIQPTFDELEKFRQTGEGGDGDMASLSTLFANRKKGHFMKGDRVIVVKGDLRNLKGHVEKVEEDTVHIRPNQKDLPLTLAFSDKELCKYFDLGNHVKVVSGSSEGATGMVVSVQGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGEYELHDLVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52271" PGL_stop="58217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53563" e_stop="53994"/>
            <exon e_start="56743" e_stop="56889"/>
            <exon e_start="57083" e_stop="57147"/>
            <exon e_start="57569" e_stop="57638"/>
            <exon e_start="58029" e_stop="58217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.827" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="53563" e_stop="53994" e_length="432"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="56743" e_stop="56889" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57083" e_stop="57147" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.981">
            <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57569" e_stop="57638" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="57639" i_stop="58028" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58029" e_stop="58217" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53563" stop="53994"/>
              <exon start="56743" stop="56860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53576" stop="53994"/>
              <exon start="56743" stop="56869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53582" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57147"/>
              <exon start="57569" stop="57638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53585" stop="53991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53606" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57147"/>
              <exon start="57569" stop="57638"/>
              <exon start="58029" stop="58217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53606" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57147"/>
              <exon start="57569" stop="57638"/>
              <exon start="58029" stop="58116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53611" stop="53973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53611" stop="53928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53723" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57147"/>
              <exon start="57569" stop="57633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53723" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53772" stop="53994"/>
              <exon start="56743" stop="56795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACACTTAAACACTCACCTCACTGCTCTGTTCTGCTCAGTAGCAACAACAACAATGGCAACCATACACAGCAGCAAGACCAGACCTTTCCCTTCACACCACACAGTAACCCCGTGCACTCGCACCCACCAGATCGGCGCTCTAGCTCTCGTCATCATCACTTTCTTCCTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG : GTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAG : GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG : TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAG : GGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCATGGCTCTAGGATAGTTGAGTCTTTGCCTTTGTCAAAGAGGAAACATCTAGCGAATTATTTAGGTCGAGCACAAGGAAAGGTGGGTCGCCTTCGGTTG</gDNA_template>
            <first_frame> L  H  L  N  T  H  L  T  A  L  F  C  S  V  A  T  T  T  M  A  T  I  H  S  S  K  T  R  P  F  P  S  H  H  T  V  T  P  C  T  R  T  H  Q  I  G  A  L  A  L  V  I  I  T  F  F  L  T  R  I  F  D  Q  S  L  N  S  S  S  F  S  I  P  T  S  G  Q  Y  R  S  K  N  D  V  I  R  F  S  D  S  G  G  S  I  F  W  P  Q  R  G  Y  G  T  H  L  S  L  K  I  Y  V  Y  D  E  N  E  I  D  G  L  K  H  L  L  Y  G  R  D  R  K  I  S  P  D  S  C  V  K  G  Q  W  G  T  Q  :  V  K  I  H  R  M  L  L  Q  S  R  F  R  T  R  K  K  E  E  A  D  L  F  F  V  P  A  Y  P  K  C  V  R  V  M  G  G  L  N  D  K  E  I  N  Q  T  Y  V  K  :  V  L  S  Q  M  P  Y  F  R  L  S  G  G  R  N  H  I  F  V  F  P  S :   G  A  G  A  H  L  F  K  S  W  A  T  Y  L  N  R  S  I  I  L  T  P  E  :  G  D  R  T  D  K  R  D  T  S  A  F  N  T  W  K  D  I  I  I  P  G  N  I  D  D  G  M  T  T  H  G  S  R  I  V  E  S  L  P  L  S  K  R  K  H  L  A  N  Y  L  G  R  A  Q  G  K  V  G  R  L  R  L </first_frame>
            <second_frame>  Y  T  *  T  L  T  S  L  L  C  S  A  Q  *  Q  Q  Q  Q  W  Q  P  Y  T  A  A  R  P  D  L  S  L  H  T  T  Q  *  P  R  A  L  A  P  T  R  S  A  L  *  L  S  S  S  S  L  S  S  S  P  E  S  S  T  S  H  S  I  P  L  P  S  Q  S  L  L  L  D  N  T  D  P  R  T  T  S  Y  A  S  P  I  P  V  G  P  S  F  G  H  N  A  G  M  G  P  I  F  H  *  R  F  M  C  M  M  R  M  K  L  M  G  *  N  T  C  C  M  A  V  I  G  R  F  R  L  I  L  A  L  K  V  N  G  V  L  R :   L  R  Y  I  G  C  F  C  S  Q  G  S  G  L  E  R  K  K  R  Q  T  F  S  L  C  L  L  I  L  S  V  F  E  *  W  V  D  *  M  T  K  R  L  I  R  P  M  *  R :   S  *  V  K  C  H  I  S  G  Y  P  V  A  A  T  T  Y  L  S  S  Q   : V  V  L  E  L  I  Y  L  N  R  G  R  H  T  *  I  G  L  *  Y  L  P  L  R :   G  I  A  Q  I  K  E  T  L  V  P  S  I  H  G  K  I  L  S  Y  L  E  T  L  M  M  G  *  L  L  M  A  L  G  *  L  S  L  C  L  C  Q  R  G  N  I  *  R  I  I  *  V  E  H  K  E  R  W  V  A  F  G   </second_frame>
            <third_frame>   T  L  K  H  S  P  H  C  S  V  L  L  S  S  N  N  N  N  G  N  H  T  Q  Q  Q  D  Q  T  F  P  F  T  P  H  S  N  P  V  H  S  H  P  P  D  R  R  S  S  S  R  H  H  H  F  L  P  H  Q  N  L  R  P  V  T  Q  F  L  F  L  L  N  P  Y  F  W  T  I  Q  I  Q  E  R  R  H  T  L  L  R  F  R  W  V  H  L  L  A  T  T  R  V  W  D  P  S  F  T  E  D  L  C  V  *  *  E  *  N  *  W  V  K  T  L  V  V  W  P  *  S  E  D  F  A  *  F  L  R  *  R  S  M  G  Y  S   : G  *  D  T  *  D  A  F  A  V  K  V  P  D  *  K  E  R  R  G  R  P  F  L  C  A  C  L  S  *  V  C  S  S  D  G  W  T  E  *  Q  R  D  *  S  D  L  C  E   : G  P  K  S  N  A  I  F  Q  V  I  R  W  P  Q  P  H  I  C  L  P  K  :  W  C  W  S  S  F  I  *  I  V  G  D  I  L  E  S  V  Y  N  T  Y  P  *   : G  G  S  H  R  *  K  R  H  *  C  L  Q  Y  M  E  R  Y  Y  H  T  W  K  H  *  *  W  D  D  Y  S  W  L  *  D  S  *  V  F  A  F  V  K  E  E  T  S  S  E  L  F  R  S  S  T  R  K  G  G  S  P  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53563" stop="53994"/>
                    <exon start="56743" stop="56889"/>
                    <exon start="57083" stop="57147"/>
                    <exon start="57569" stop="57638"/>
                    <exon start="58029" stop="58217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLNTHLTALFCSVATTTMATIHSSKTRPFPSHHTVTPCTRTHQIGALALVIITFFLTRIFDQSLNSSSFSIPTSGQYRSKNDVIRFSDSGGSIFWPQRGYGTHLSLKIYVYDENEIDGLKHLLYGRDRKISPDSCVKGQWGTQVKIHRMLLQSRFRTRKKEEADLFFVPAYPKCVRVMGGLNDKEINQTYVKVLSQMPYFRLSGGRNHIFVFPSGAGAHLFKSWATYLNRSIILTPEGDRTDKRDTSAFNTWKDIIIPGNIDDGMTTHGSRIVESLPLSKRKHLANYLGRAQGKVGRLRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52271" e_stop="52361"/>
            <exon e_start="52864" e_stop="52904"/>
            <exon e_start="53731" e_stop="53994"/>
            <exon e_start="56743" e_stop="56889"/>
            <exon e_start="57083" e_stop="57147"/>
            <exon e_start="57569" e_stop="57638"/>
            <exon e_start="58029" e_stop="58139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.825" e_score="0.516"/>
          <exon-intron don_prob="0.605" acc_prob="0.000" e_score="0.537"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.986"/>
          <exon-intron don_prob="0.827" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.516">
            <gDNA_exon_boundary e_start="52271" e_stop="52361" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.825">
            <gDNA_intron_boundary i_start="52362" i_stop="52863" i_length="502"/>
          </intron>
          <exon e_serial="2" e_score="0.537">
            <gDNA_exon_boundary e_start="52864" e_stop="52904" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.605" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52905" i_stop="53730" i_length="826"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="53731" e_stop="53994" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53995" i_stop="56742" i_length="2748"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="56743" e_stop="56889" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56890" i_stop="57082" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57083" e_stop="57147" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.827" acc_prob="0.981">
            <gDNA_intron_boundary i_start="57148" i_stop="57568" i_length="421"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57569" e_stop="57638" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="57639" i_stop="58028" i_length="390"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="58029" e_stop="58139" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52271" stop="52361"/>
              <exon start="52864" stop="52904"/>
              <exon start="53731" stop="53994"/>
              <exon start="56743" stop="56889"/>
              <exon start="57083" stop="57147"/>
              <exon start="57569" stop="57638"/>
              <exon start="58029" stop="58139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53772" stop="53994"/>
              <exon start="56743" stop="56795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTAAACAAATAGTAATAAAAGGTATATTTAAAAAGAAGTAAAAATGTAAGGGAAAAAATTCAGTTTACCTTTTCCTCGTTTAAAAAA : TGATGTTTTCTTTGAGCCAAGAGCAGATTTTAGTCCACAAG : CTCACCAGAATCTTCGACCAGTCACTCAATTCCTCTTCCTTCTCAATCCCTACTTCTGGACAATACAGATCCAAGAACGACGTCATACGCTTCTCCGATTCCGGTGGGTCCATCTTTTGGCCACAACGCGGGTATGGGACCCATCTTTCACTGAAGATTTATGTGTATGATGAGAATGAAATTGATGGGTTAAAACACTTGTTGTATGGCCGTGATCGGAAGATTTCGCCTGATTCTTGCGTTAAAGGTCAATGGGGTACTCAG : GTTAAGATACATAGGATGCTTTTGCAGTCAAGGTTCCGGACTAGAAAGAAAGAAGAGGCAGACCTTTTCTTTGTGCCTGCTTATCCTAAGTGTGTTCGAGTGATGGGTGGACTGAATGACAAAGAGATTAATCAGACCTATGTGAAG : GTCCTAAGTCAAATGCCATATTTCAGGTTATCCGGTGGCCGCAACCACATATTTGTCTTCCCAAG : TGGTGCTGGAGCTCATTTATTTAAATCGTGGGCGACATACTTGAATCGGTCTATAATACTTACCCCTGAG : GGGGATCGCACAGATAAAAGAGACACTAGTGCCTTCAATACATGGAAAGATATTATCATACCTGGAAACATTGATGATGGGATGACTACTCATGGCTCTAGGATAGTTGAG</gDNA_template>
            <first_frame> K  I  K  Q  I  V  I  K  G  I  F  K  K  K  *  K  C  K  G  K  N  S  V  Y  L  F  L  V  *  K   : M  M  F  S  L  S  Q  E  Q  I  L  V  H  K  :  L  T  R  I  F  D  Q  S  L  N  S  S  S  F  S  I  P  T  S  G  Q  Y  R  S  K  N  D  V  I  R  F  S  D  S  G  G  S  I  F  W  P  Q  R  G  Y  G  T  H  L  S  L  K  I  Y  V  Y  D  E  N  E  I  D  G  L  K  H  L  L  Y  G  R  D  R  K  I  S  P  D  S  C  V  K  G  Q  W  G  T  Q  :  V  K  I  H  R  M  L  L  Q  S  R  F  R  T  R  K  K  E  E  A  D  L  F  F  V  P  A  Y  P  K  C  V  R  V  M  G  G  L  N  D  K  E  I  N  Q  T  Y  V  K  :  V  L  S  Q  M  P  Y  F  R  L  S  G  G  R  N  H  I  F  V  F  P  S :   G  A  G  A  H  L  F  K  S  W  A  T  Y  L  N  R  S  I  I  L  T  P  E  :  G  D  R  T  D  K  R  D  T  S  A  F  N  T  W  K  D  I  I  I  P  G  N  I  D  D  G  M  T  T  H  G  S  R  I  V  E </first_frame>
            <second_frame>  K  L  N  K  *  *  *  K  V  Y  L  K  R  S  K  N  V  R  E  K  I  Q  F  T  F  S  S  F  K  K  :  *  C  F  L  *  A  K  S  R  F  *  S  T  S :   S  P  E  S  S  T  S  H  S  I  P  L  P  S  Q  S  L  L  L  D  N  T  D  P  R  T  T  S  Y  A  S  P  I  P  V  G  P  S  F  G  H  N  A  G  M  G  P  I  F  H  *  R  F  M  C  M  M  R  M  K  L  M  G  *  N  T  C  C  M  A  V  I  G  R  F  R  L  I  L  A  L  K  V  N  G  V  L  R :   L  R  Y  I  G  C  F  C  S  Q  G  S  G  L  E  R  K  K  R  Q  T  F  S  L  C  L  L  I  L  S  V  F  E  *  W  V  D  *  M  T  K  R  L  I  R  P  M  *  R :   S  *  V  K  C  H  I  S  G  Y  P  V  A  A  T  T  Y  L  S  S  Q   : V  V  L  E  L  I  Y  L  N  R  G  R  H  T  *  I  G  L  *  Y  L  P  L  R :   G  I  A  Q  I  K  E  T  L  V  P  S  I  H  G  K  I  L  S  Y  L  E  T  L  M  M  G  *  L  L  M  A  L  G  *  L   </second_frame>
            <third_frame>   N  *  T  N  S  N  K  R  Y  I  *  K  E  V  K  M  *  G  K  K  F  S  L  P  F  P  R  L  K  N :   D  V  F  F  E  P  R  A  D  F  S  P  Q   : A  H  Q  N  L  R  P  V  T  Q  F  L  F  L  L  N  P  Y  F  W  T  I  Q  I  Q  E  R  R  H  T  L  L  R  F  R  W  V  H  L  L  A  T  T  R  V  W  D  P  S  F  T  E  D  L  C  V  *  *  E  *  N  *  W  V  K  T  L  V  V  W  P  *  S  E  D  F  A  *  F  L  R  *  R  S  M  G  Y  S   : G  *  D  T  *  D  A  F  A  V  K  V  P  D  *  K  E  R  R  G  R  P  F  L  C  A  C  L  S  *  V  C  S  S  D  G  W  T  E  *  Q  R  D  *  S  D  L  C  E   : G  P  K  S  N  A  I  F  Q  V  I  R  W  P  Q  P  H  I  C  L  P  K  :  W  C  W  S  S  F  I  *  I  V  G  D  I  L  E  S  V  Y  N  T  Y  P  *   : G  G  S  H  R  *  K  R  H  *  C  L  Q  Y  M  E  R  Y  Y  H  T  W  K  H  *  *  W  D  D  Y  S  W  L  *  D  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0208L16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52358" stop="52361"/>
                    <exon start="52864" stop="52904"/>
                    <exon start="53731" stop="53994"/>
                    <exon start="56743" stop="56889"/>
                    <exon start="57083" stop="57147"/>
                    <exon start="57569" stop="57638"/>
                    <exon start="58029" stop="58139"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMFSLSQEQILVHKLTRIFDQSLNSSSFSIPTSGQYRSKNDVIRFSDSGGSIFWPQRGYGTHLSLKIYVYDENEIDGLKHLLYGRDRKISPDSCVKGQWGTQVKIHRMLLQSRFRTRKKEEADLFFVPAYPKCVRVMGGLNDKEINQTYVKVLSQMPYFRLSGGRNHIFVFPSGAGAHLFKSWATYLNRSIILTPEGDRTDKRDTSAFNTWKDIIIPGNIDDGMTTHGSRIVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 59 chains have been computed
$ 
$ memory statistics:
$ 172736 bytes spliced alignments in total
$ 38 spliced alignments have been stored
$ 4545 bytes was the average size of a spliced alignment
$ 16288 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 2036 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 65 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 08:31:47
-->
