<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 08:29:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325782" ref_strand="+" ref_description="SGN-E325782 [cTOC-12-K13]">
      <seq>gagagttgaataaatacaaaagaagaaacagccaaaccaaagagaatttatcgttcaaggaaaagggatggaacactccattgaaatagatgatcaaattccactgctttctcaaacttatcaagatgagatagaaggagggaggaaagtggatcctttatttgagaatttattcaattcgcgtgttaaaccaattagcatattcaaagtaaatgtggggctacgtgaatcaaatccagatgcttatacaccaaagatggtctctattggtccttaccataatggaaaacctcaatttcgtccaatgcaaaagaacaaactattgtacctacgacggtttcttagacgaaaggagaggcttgatgtggatagttgcatcaatgagttggaggaggaagcaaggaattgttacgatgatatagaagacctcaaaattggaagccgcgaattttgcgagatgttattacttgatggttgttttgtggttgagtttattcgagagcgttttgagataggcccaagacaagaagacgaaatcatcaaaagtgacattggttgcatatataatcaaatactccgagatttgatgttactagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="8917" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8615" g_stop="8587" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="44" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8586" i_stop="877" i_length="7710">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="876" g_stop="791" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="130" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="790" i_stop="502" i_length="289">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="501" g_stop="33" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="599" r_length="469" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E325782" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8615" e_stop="8587"/>
          <exon e_start="876" e_stop="791"/>
          <exon e_start="501" e_stop="33"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGAAGAAACAGCCAAACTAAATTGGTAATTTTCTGCATTTTCTCGTTCTTTGCTAAAATAATATCAATTTATTATAGCTAAAACGTTACCCATAGTAATGTTTCTTTAGAATTCTAGTGATTTTTACATATATATATATATATATATATATATATATATTATTTATTAAGTCTATAGTCTACTCCGTAGAATATCAACTAAATTTTCCTATGTTCACAAAAAGAGGATGAATTCTCAAATCTCAACCTTGAGTCTATGAATGATCCTTTAATTTGCCTTTGCCTTTGCCTCCAACGTTATTACAAGTAACGTAATTATCTAGAAAACGTGTCTCAGAGTGACGAATTATAGAACCTTATTAATAATAACATTTTATATTTATTTTACTCTGTCAGACCTTTATCTTTTTGTCATTGAATTCTATTGAATGAAATAAAGCCAAAACATTATTAAGAAATATTTTTCTTCTAATTTTGTAAAATTTAAACAACTCTCAACTATATAAATTAATTTTTTTTATTTCATTAACTCATTTTTCTTTTGGCAATTAACAATATAATCTTTTGCTATATAAGTGCATGAATTTCAAGAGATTATAGAATTTTTTAGACTATTTCCTTTCATATAATCGTGGTTTTACAATTATTGGGTTCTTTTTATTTGAGTCCGGTTTGGAGGGGTAATTTTTTAAAGTCACGTGATATTTTTAAAATTAAAAATTAATAATATATATTTTTTAATTCATTCTATTTACAGGGTAAATATGCATCATTTACACTATGTTTGGATCATTGTTATCTATTGTATTGTATTGTGTTGGTACTATACCTACAATGTTTGTTTTGATTGTTACTTAAAATGTATTGTACTGTATTGTTAAATTTCGTTGTTACGTAACAATGAAATCCCTATTTTATGGAACAACCAATTTGGTGTGTTCCCGTTGTTACTTAATTTCTTTTTTCAGTTATATCTTTACATCATATTTTAAAATACTATTTTACCCTCACCTTAATTATTTAAATCTAGTCAAACCTCTTACCCTAGAATAATTAAGGACAATTAAGTAAATTTATAAATTACAATACAGTACGATATAATCAAACCAAACAATTAAAATGTTACTAAACAACAAATAAATAATATAATCTAGTCAAACATTGTATCTACCATACAATACAGTATATTTGAGTTCAATACAATACATACACTATTAAACGGTAACAATGATCTAAACAAAATGGTAAAGGGCATGTTTGGCAACACTTTAACTTTAACTTTCCACATGACATGTTTAAGACCACAAGATTAAAGGGCATTTTGGTACATTTGACATAACTTCAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTTTTAAACTCTGTTCCAAGTCAAACTAGGACATTCTTTTTGAAACGAAAGAAGTATGTAAATTTCCTAATAAGTTATAACTAATCCATACATTACTCATACATGCATAACTTTAATATGCTACCAAACAACCCCTTTAAGGTATACAATACACATTATTCTTTTAAAATTTTTTTGCAATTAAGTGTCTAATACTCCCTCAATTTTCCATTAATGTATTACTTTGGATAATAACAATAATAGTCATGGTATCTAATTACAAAGAATGTGTCTTTTGTAGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATTAATGTGTCTACCCTCACATCCTTAACCCACATGCCGATCTTAATTGTGGTTGCTTTGATTTTATACAAATATTATTTTCAAATATTACATTTAACTTATTTATCAAACATTAAAAATAAATAAGAATCTTACATATTTTCATAAAAATAATAGCAAATCTTCCATCATACTGAACACACCCTAAACACTTACCAAATTTAAGAATAAATAGTGGCTTGAACACACACTCAAAGTGTTATTCTATGATATGTTTTCTTAAATATAATGTCTATATACACTTTATTCTATTATACTTAAAACTTTATTTATTCTCTTATACATTACTCAAAATGCACACAATTTCATGTAAGTAATATAAGTAGGTTCGCAATTAATCTATATATAGTAAGCCCATATACAATTTGATATTCATCATCTCTCATATTCCTTCACCTTCATAACAATTGAGCGGAGCAAAATAATTTAAGAAGAAACTCAAGTGCAATCCAACTAGTCCATTTTGAATCAGGTAATTTTTAAATGTCTTATATAACATCCTATCCAATACACTATAACAAATAAAAAAAATTTGTGAGAATATTAATTATAATTTCTATTATATTATATTTAATGGTAATAATATAATATGGATATTTAATAACCAACATTATAGATAAATTTGATTAAGTAGTAATTGTCTCAATCGTACCTAAAGTTCCATCTCCTAAACAAAATACTAGTATGCTACTTATATTGATTACGAGGTATTTTATTAATTCGAGTAGTAAGTTGTAAGATATTAGATATCTTTATTTTAATATAGGGGGAAAAATCTGATATATCCCTCAACTTTGTCATTTAGAGCTAATATACGCCTTGTTATGAAAGTGGCCCATATATATCCCTACTTGTAAATAAATGGCTCACATATACCCTTTTCCTCTAACGGAAATGAAAAAAATATTAATTTTAATCTAATTTTTTATTAATTTTTTCTAAAAATATAATCCCATATGAGTAATTTAATCCTCGTCAAACATATTTTTTTTGATTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGATCAGTTTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATGATATAAGAAGTCAAAAAATAATTTATGTATTAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATGTACCATAAATATTTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGTCATTTTCTAACGGCAGGGCTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTATATAACGGTAAGGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTATTCCCTTTTATGTATGTATTAATATGTAAAGATTAGCTATTCTGCATAAGTTATTCTATTCTATCTTGCATAAAATAATACATAGATTCTCTCATATCTTATAATACATATATATCATATACGAGTTTCTAAGTTGTCAATCAAATGTCATATTAATATCTACCTACCAATTAACACCATATAAATTATAGAATAATTAATAAGTGAATAACTTTTTTCTTATAAATTGATATTATTACCTCTTTGGTTTGGCTGTTTCTTCTTTTGTATTTATTCAACTCTTGCTTCTCCCGGATTTTTCATTGCTATGAAGTACTTATTATGTATAGAGAAAAAAAAGAGAGAGATTGATAAATACTGTTAATTGTAGGGTAGGGGGTGTCAATGTTAGGTTCGATCGATTATTTTATAAAATTTATCCAAAGGTATAGTATCATCTTCAACTTCATCATCTCATTATTTTTTTGGGTGGTATTCACAATTTCTTCTATGTTCTGGACCTCTTAACATGTTTCACTGTCACTCGGATAATCCAACAGGTTATTGACATCCATTTTATTTTGGTAACCGAGACCATTAATCAATGACCTCAAGTTCATTAGTGAGGTTTTCACAAGTAGGTTCATTATAATTCTCTGAGATTACATCCCCTGAACGAATTTTACATTGTCGAAAAACTATTTGTGATTATCTCTTGCTGAACATTTTTTGTCCAAACAGGGATTGCAAAATTGACAACATCCAAAATATTAATCTTTAGTGGATTAGTTTGTTCCACTACATAGTCTTCTAATATTCTACAATGAAATATCTTGAAAACTCTTATTATCCCAACATCACAAGAATGAAATTAGTAAGATACAATAATTTGATATATTCGTTGTATTTATGTATCACATTTTTTAATGTGAAATCAATAAATTAAATATGATACATAAACTTGTAAGATACAATGATTTTGATATATTCAAAATTAACCTTCATTAAAACTTAAATCATTCTTTAAATTAATATATATATATTATCGATTACATAATATCTCTATAATATAATAAAATGTCATGATCCAACTATATTAATTTATATAGATTTTACCGTAGTAAAAAGGACTACATTTTCTTTGTTGCTGTTAATAAAAGTCGTAGGACTATTCTTGTAATTTCTTATTCTTCGACTTCTAGCTATTGCTATTTATGATTTCGTGTAGTTCAATTATAATATTATTTTGTTGTAGTACTGTTATGCTATACTATTTTTTTTATAAAAAAAACTATCTATTGCTTTTTGTACTTAATTTTATTACGTCTTTTCTGAATTGTTTTTATCTTGAGCCGAAGATCTATCGAGAATAACCTCTTCATATCACATAATACCAAGTATACTTTCGTAGAATAATTTTAAAAACTCTCTAGACACTTTTACAATTTAAAAAGTATGAATCAAATAATATAATCGGAGGTAACAATAAATATTCATCCCACTATTTTACCGTAATGTAAAATGGAGTTAAACAAAGATAGAAAAATTGAAACGTATGGGCTCAAGAATTAGGTTTACTAAAATTAAGTATCTATTTAATAAGAGATTTAGTATCGTGGCTTTTCGATATTTAATATTTTATATTTTTATTGGGTGTGTTTGGTAAGAAGGAAAATGTTTTTCGTTGAAATTTTTTTCTTAAAAAACATGTTGATTTCTAACTTATTTTCTCATGTTTGGTTGGTGAGTGAAAAAATATTTCCTATTATTTGATTAATGAATGAAAATATTTTTTTCTCCAGAATTTATCTTTTATTTTATGAATAGAGAGTAGAAAATCTCTTTAGGAAAATAATTTCTAACATAAAAATCAACCCCACCCCAACGACCGATTCGAGACTGGTCCCCATGACCGATTCGGGATCCGACCTTAATCCCCAAATTAGGAGACCCTAACTCCTAATCCAAAACATGGTATTCGAATTGAGACCTGACCCTGACCCTGACATCTGATCCAAGACTTGACTTCAACTCTCGATTCGAGACTCGATCCCAACCTCGACACCCGAACCAACACAAGACCCCAACGATCTATTCAAATTCCAACTCTAAGACCTAAACCTAACTTTTGCCCGAGACCTAACATTCAAAAAATGACCCCACCCCGACACTTGCATCGACATTCGATATGGGACCTAGCCCCGACTCCCAATCTAGAACTCAACTTTCGAACGGGGACGGCGGGACCCAACTCGACTTCCGACCCAAGATTCAACTTCCAAATTGAGATTCGACCCTGACTATCAAATCGGGACTCGGGTCCACCCTGACTAGGAACCTGACTTCCGAATCGGGATTTAAATTTCTTATTTTAAAAAAAATAATTCTTTTTTGGCGGTGGGGTGGTAAGGAGTTGAGATAGGAGTGGAATAAAAATAACAGAAATAGTTAAAATTTGAAATATTTGTAAAAAAACAAACTGGGTGGACCGGTGGGGGTAAAAATCAGAAATTTTTAAAATTTGAGGTTTTTCAATCTTTTTACGTTGGGGGTTGAGGCTAGTTTAGAGGTAGGCATTAATAAAATGAAATTATTTTTAAAAAAAAAAATTAAAATTTTTAAATTTTAACTTGGAGAAGAGTTTAATTATTTACTTTATTTTTAAAGGTAAGTTATTTTTTAAAATTTTAAAAAAAAAGTTTGAATTGAAAAATATTTTCCAAATATTTAATCCAACCGAATATATCACTCAAACACACCTGTTCTTGGCCGACGACTCAAGTCAATGACTAAATATTTTCCACTATATTTAACTTTTGAGTACGAAAGTTAGGTCTAAAATTAATATCACAAAGATAAGGTAGTTGAGAAGGTTCTTTAATACCACAACAAAAAGTACAAACATATTATTTAATTTTAGTTTCAAGAAGACTTTATTTCTCTGTCTCCTTTTGAGTAAATTAATTATCAAGTATATCATCAACGAGGATCTATTTGAAGTTGAGAGTACTCTTTATTTTTAATCAAAAGTCTTAACTGTTAGGGAACACTTTACTTTTTTTCTTTTAGCCATTAATATGAAACTTTGTTCACACATTTTCAATAATCGAACAGGCAAAGAAACTAAGTTGAACCCTATCCTATCTTGCCAAACCACTTACCAATATGAAATAACATATATATATATATATATATATATATATATATATATATATATATTAAAACTCTATAAAACGTGTTTAATTCAAGAGAAAAGGGTCTGATATACTCCTCAACTTTGTCATTTGTAGCTGATATACCCCTCGTTGTGAAATTGGCTCATACATACCCTTACCGTTATACAAACGGCTCACATATACCCCTGCCGTTACAAAATGGCTCACATAAACCCTTCATTTAACGGAAGTTTTAAGAAAATTAGTTTTAAATTTATATTTATTACTTTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAAGTATATTTTAATTTTTTTAATACATCAATTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTTACATTGTTTTTTTCTTTCATTCCTTTGTTTAAAGAAAAAAAAATTAAACATTTTTTTGTCTATATTGTAGTTTGATTTTTGTATTCGAAGAAAAAAATTTGATCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTCTAAATTAGTCATTGAAACAAAAAAAAGTCAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATAGGATTATATATTGTAGAAAAAATAATAAAAATTTAGATTAAAATTATCTTCTTTTTTTTTCATTTCCGTTAGAGGAAAAGGGTATATGTGAGTCATTTGTTTATAAGTAGGGGTATATATGAGTCAATTTCATAACAAGGGGTATATCAACTCCAAATGACAAAATTTAGGGGTATATCAGACCGTTTTCCCTACATAAAATAATATTCCCTTTGTTTCAAAAAGAATGTCCATATTTCATTTTTAATTTGTTTAAAAAAGAATGACCCCTTTTCTTTTTTGACAACACTTTAACTTTTCACGTAACATGTTTAAGACCACAAGATTAAAGGACATTTTGGCACATTTGACATAACTTTAATTTAGAATCACAAGATTAAAAAATCTTCTTTCTTTTCTTAAATTATGTTCCAAGTCAAACTGGGGCATTCTTTTTTAAACGAAAGAAGTATATAGATTTCCTCATAAGTTATAACTAATCCCTACATTACTCATACCTGCGTAACTTTAATATGCTACCAAACAACCCCTGTAAGGTATACAATACACATTATATTCTTAATTTTTTATTTTTTTTTGCAATTAAGTGTCTAATACTCCCCCAATTTGCCATTAATGTATTGCTTTGGATAATAACAATAATAGTCATGGTATCTAATTACAAAGAATGTGTTTTTTGTAGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAGGTTTTTTTTTTCTCTCAACTATACAAATATATAATTTTTTAGATTATTTCCTTTCCTATAATTTTAGGGACAAAGAACATAGATGAGTAAGTTTTTAAAGTCAAATGATATTTTTAGAATTAAAAAATTCTTAATTCGTCGTGTTTATAAAATGCATAAAGAAAGAAAGAAGGTATATATGCACTAATTTTTTTTTATCGAGACATATATTCGATCTACAAAATTGAGACCTTTTACACTTAACAAAAAAAAGTTGTTTCTAATAAACATTTTACCCTTTTAGTTACAGATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAAGCAAATACTCCGAGATTTGATGTTACTAAAAA</genome_strand>
        <mrna_strand>ACAAAAGAAGAAACAGCCAAACCAAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATCGTTCAAGGAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG.................................................................................................................................................................................................................................................................................................ATAGAAGGAGGGAGGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGGCTTGATGTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAAAATTGGAAGCCGCGAATTTTGCGAGATGTTATTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTTTTGAGATAGGCCCAAGACAAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAATCAAATACTCCGAGATTTGATGTTACTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318501" ref_strand="+" ref_description="SGN-E318501 [cTOB-10-E19]">
      <seq>aagaaaccagccaaaccaaagagaatttatcgttcaaggaaaagggatggaacactccattgaaatagatgatcaaattccactgctttctcaaacttatcaagatgagatagaaggagggaggaaagtggatcctttatttgagaatttattcaattcgcgtggtaaaccaattagcatattcaaagtaaatgtggggctacgtgaatcaaatccagatgcttatacaccaaagatggtctctattggtccttaccataatggaaaacctcaatttcgtccaatgcaaaagaacaaactattgtgcctactacggtttcttaaaccaaaggagaggcttgatgtggatagttgcatcaatgagttggaggaggaagcaaggaattgttacgatgatatataagacctcaaaattggaagccgcgaattttgcgagatgttattacttgatggttgttttgtggttgagtttattcgacagcgttttgagataggcccaagacaagaagacgaaatcatcaaaagtgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="1178" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="876" g_stop="791" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="109" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="790" i_stop="502" i_length="289">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="501" g_stop="80" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="531" r_length="422" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E318501" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="876" e_stop="791"/>
          <exon e_start="501" e_stop="80"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAGGTTTTTTTTTTCTCTCAACTATACAAATATATAATTTTTTAGATTATTTCCTTTCCTATAATTTTAGGGACAAAGAACATAGATGAGTAAGTTTTTAAAGTCAAATGATATTTTTAGAATTAAAAAATTCTTAATTCGTCGTGTTTATAAAATGCATAAAGAAAGAAAGAAGGTATATATGCACTAATTTTTTTTTATCGAGACATATATTCGATCTACAAAATTGAGACCTTTTACACTTAACAAAAAAAAGTTGTTTCTAATAAACATTTTACCCTTTTAGTTACAGATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACAT</genome_strand>
        <mrna_strand>AATTTATCGTTCAAGGAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG.................................................................................................................................................................................................................................................................................................ATAGAAGGAGGGAGGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGGTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTGCCTACTACGGTTTCTTAAACCAAAGGAGAGGCTTGATGTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATATAAGACCTCAAAATTGGAAGCCGCGAATTTTGCGAGATGTTATTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGACAGCGTTTTGAGATAGGCCCAAGACAAGAAGACGAAATCATCAAAAGTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324719" ref_strand="+" ref_description="SGN-E324719 [cTOC-8-O12]">
      <seq>agaatttatcgttcaaggaaaagggatggaacactccattgaaatagatgatcaaattccactgctttctcaaacttatcaagatgagatagaaggagggaggaaagtggatcctttatttgagaatttattcaattcgcgtgttaaaccaattagcatattcaaagtaaatgtggggctacgtgaatcaaatccagatgcttatacaccaaagatggtctctattggtccttaccataatggaaaacctcaatttcgtccaatgcaaaagaacaaactattgtacctacgacggtttcttagacgaaaggagaggcttgatgtggatagttgcatcaatgagttggaggaggaagcaaggaattgttacgatgatatagaagacctcaaaattggaagccgcgaattttgcgagatgttattacttgatggttgttttgtggttgagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="1178" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="878" g_stop="791" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="790" i_stop="502" i_length="289">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="501" g_stop="138" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="452" r_length="364" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E324719" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="878" e_stop="791"/>
          <exon e_start="501" e_stop="138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAGGTTTTTTTTTTCTCTCAACTATACAAATATATAATTTTTTAGATTATTTCCTTTCCTATAATTTTAGGGACAAAGAACATAGATGAGTAAGTTTTTAAAGTCAAATGATATTTTTAGAATTAAAAAATTCTTAATTCGTCGTGTTTATAAAATGCATAAAGAAAGAAAGAAGGTATATATGCACTAATTTTTTTTTATCGAGACATATATTCGATCTACAAAATTGAGACCTTTTACACTTAACAAAAAAAAGTTGTTTCTAATAAACATTTTACCCTTTTAGTTACAGATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTA</genome_strand>
        <mrna_strand>AGAATTTATCGTTCAAGGAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG.................................................................................................................................................................................................................................................................................................ATAGAAGGAGGGAGGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGGCTTGATGTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAAAATTGGAAGCCGCGAATTTTGCGAGATGTTATTACTTGATGGTTGTTTTGTGGTTGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222998" ref_strand="+" ref_description="SGN-E222998 [cLEL-14-K6](-)">
      <seq>tatggaaaagccatcacaaaagtatatacagttagttacagaggacgattacgagttctggtttatggggttctttaataatcaaaaaactctaagatatctgcagcaggcaatttcaactttcacaaacttcaatcagctaagacgatagttttttaattttattttgtttcctaatacacccattcatcaatgtaaaatgttgatgcaagatgcagatatgttcaaacttgtaactagctccattgctcaaaggaggttttagattttttaggctttaagcctaagttgttaatacgaatgtatagacttattgtaaaactaatcaaacaggaggctaattcatcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="32833" stop="33781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33133" g_stop="33481" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E222998" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33133" e_stop="33481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAAAAGCCATCACAGAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</genome_strand>
        <mrna_strand>TATGGAAAAGCCATCACAAAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223364" ref_strand="+" ref_description="SGN-E223364 [cLEL-14-K6](-)">
      <seq>gttctggtttatggggttctttaataatcaaaaaactctaagatatctgcagcaggcaatttcaactttcacaaacttcaatcagctaagacgatagttttttaattttattttgtttcctaatacacccattcatcaatgtaaaatgttgatgcaagatgcagatatgttcaaacttgtaactagctccattgctcaaaggaggttttagattttttaggctttaagcctaagttgttaatacgaatgtatagacttattgtaaaactaatcaaacaggaggctaattcatcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="32887" stop="33781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33187" g_stop="33481" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="316"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E223364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33187" e_stop="33481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</genome_strand>
        <mrna_strand>GTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254540" ref_strand="+" ref_description="SGN-E254540 [cLEG-29-M24]">
      <seq>tcccacataccttcaaaatacagtaatactccacctcaaaccagaatcacaatggacttactccgtggaaattcggtgggtattcccatgagttcatcagtaggttcacttgaaagccagccgaaaagactacttgccttacctgcttgcgaagaccatatcgttccatatgcaacttcaaagaacttgtctcaaattaagcagagaagatatgtcattggtaagatgaacaaattgggagaaagggtggattgtctagtaaaaagcatccgcgagcatgtgagcctaagcccgaaactaacagaaactttaaagggaaaattgagccttggagcaaaaatccttcaagtaggagggttggagaaaatattcaggcagaagttcagtgttagagatgatgaaaagctattgaatgtttctcaatgctatttatcaacgacagctggtccaatagcaggccttctcttcatctctaccgataagattgctttctgcagcgagagatcaataaagctcttatctccaactggaaagttgcttagaatctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="37643" stop="39287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37943" g_stop="38147" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38148" i_stop="38240" i_length="93">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38241" g_stop="38315" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="280" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38316" i_stop="38716" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38717" g_stop="38987" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="551" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E254540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37943" e_stop="38147"/>
          <exon e_start="38241" e_stop="38315"/>
          <exon e_start="38717" e_stop="38987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGAGTGAGTATTTCCCTGGTCCCTTGATGAAGAATCAACTTGATCTAAACCTTGAATGAAGAGATCATAAAAATAACAATATTCTTGAATATGCAGGAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATGGTAAGCGCTTAAAATTCTCTATAAAAGACTTAAATATATCTATTGAAAATATTACTGAGATAATAGTTTGTTTTAAGTCGAAAAATAAGTATTTGAACTTAAAGTTTGTGTCTGGACATGAACTCCATTTGAAAAAAAAAAGAAGGTTAAAGCGAAAACAATTATCTCACTCAAAAATGCTACTCAGACAAGTTAATTCCATACTATACCAGCCTTTCAAATGCTAAAATGTTCACCAATTGCGAATACTGATGGACAAACTTCACCTTTAAGTATTTGCAAGTGAAGTCATGACCAAACACTAGTGTAAATCTAAAGAACTCAGAGAAGTGAGTAATAAGTACAAAATTCATGTAAACATGACAGAAAATATTGATTCTAAATGTACTCTGATTGTGCAGTGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTA</genome_strand>
        <mrna_strand>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGA.............................................................................................GAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340782" ref_strand="+" ref_description="SGN-E340782 [cTOF-5-I2]">
      <seq>ccacctcaaaccagaatacaatggacttactccgtggaaattcggtgggtattcccatgagttcatcagtaggttcacttgaaagccagccgaaaagactacttgccttacctgcttgcgaagaccatatcgttccatatgcaacttcaaagaacttgtctcaaattaagcagagaagatatgtcattggtaagatgaacaaattgggagaaagggtggattgtctagtaaaaagcatccgcgagcatgtgagcctaagcccgaaactaacagaaactttaaagggaaaattgagccttggagcaaaaatccttcaagtaggagggttggagaaaatattcaggcagaagttcagtgttagagatgatgaaaagctattgaatgtttctcaatgctatttatcaacgacagctggtccaatagcaggccttctcttcatctctaccgataagattgctttctgcagcgagagatcaataaagctcttatctccaactggaaagttgcttagaatctactataaggtaaccatcccaataagtaagataatgaaagcaaaagagagcaaaaatatgcaaaagccatcacagaagtatatacaagtaattacagaggatgattttgagttctggtttatgggattcctcaatcatcaaaagacactgagatatctgcagcaggcaatctccagctcaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="37673" stop="39548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37973" g_stop="38147" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38148" i_stop="38240" i_length="93">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38241" g_stop="38315" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="249" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38316" i_stop="38716" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38717" g_stop="38991" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="524" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38992" i_stop="39071" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39072" g_stop="39247" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="700" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E340782" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37973" e_stop="38147"/>
          <exon e_start="38241" e_stop="38315"/>
          <exon e_start="38717" e_stop="38991"/>
          <exon e_start="39072" e_stop="39247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGAGTGAGTATTTCCCTGGTCCCTTGATGAAGAATCAACTTGATCTAAACCTTGAATGAAGAGATCATAAAAATAACAATATTCTTGAATATGCAGGAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATGGTAAGCGCTTAAAATTCTCTATAAAAGACTTAAATATATCTATTGAAAATATTACTGAGATAATAGTTTGTTTTAAGTCGAAAAATAAGTATTTGAACTTAAAGTTTGTGTCTGGACATGAACTCCATTTGAAAAAAAAAAGAAGGTTAAAGCGAAAACAATTATCTCACTCAAAAATGCTACTCAGACAAGTTAATTCCATACTATACCAGCCTTTCAAATGCTAAAATGTTCACCAATTGCGAATACTGATGGACAAACTTCACCTTTAAGTATTTGCAAGTGAAGTCATGACCAAACACTAGTGTAAATCTAAAGAACTCAGAGAAGTGAGTAATAAGTACAAAATTCATGTAAACATGACAGAAAATATTGATTCTAAATGTACTCTGATTGTGCAGTGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAGGTATAACTCTGCTCCATTTTTCTTCCAACTTTTCATTTTCTAACCACGTAAAGCATAATCTAACTGGTTCACAATGGCAGGTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAA</genome_strand>
        <mrna_strand>CCACCTCAAACCAGAAT-ACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGA.............................................................................................GAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG................................................................................GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555379" ref_strand="-" ref_description="SGN-E555379 [cTSC-2-I1]">
      <seq>caaattaagcagagaagatatgtcatttgtaagatgaacaaattgggagaaagggtggattgtctagtaaaaagcatccgcgagcatgtgagcctaagcccgaaactaacagaaactttaaagggaaaattgagccttggagcaaaaatccttcaagtaggagggttggagaaaatattcaggcagaagttcagtgttagagatgatgaaaagctattgaatgtttctcaatgctatttatcaacgacagctggtccaatagcaggccttctcttcatctctaccgataagattgctttctgcagcgagagatcaataaagctcttatctccaactggaaagttgcttagaatctactataaggtaaccatcccaataagtaagataatgaaagcaaaagagagcaaaaatatgcaaaagccatcacagaagtatatacaagtaattacagaggatgattttgagttctggtttatgggattcctcaatcatcaaaagacactgagatatctgcagcaggcaatctccagctcaagcaagttatgaagacacatttttttttctaatgagctcgttcttcaatgtaaaacgttcatgcaaaaacgaattcagggatctgttaaaactttgtaactagatccattgctcaaaggaggcttaaggtttaacctttgtgcccttaagagttaatgggaatgtatagacttttttttctctaaaactggtagcttttgtatagacttattttgttttttgagatagcaagagatacgaatgtacaaatttattataaaacttgtggagatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="37932" stop="39818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38135" g_stop="38147" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38148" i_stop="38240" i_length="93">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38241" g_stop="38315" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="88" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38316" i_stop="38716" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38717" g_stop="38991" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="363" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38992" i_stop="39071" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39072" g_stop="39518" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="810" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E555379" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555379" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38135" e_stop="38147"/>
          <exon e_start="38241" e_stop="38315"/>
          <exon e_start="38717" e_stop="38991"/>
          <exon e_start="39072" e_stop="39518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTAAGCAGAGTGAGTATTTCCCTGGTCCCTTGATGAAGAATCAACTTGATCTAAACCTTGAATGAAGAGATCATAAAAATAACAATATTCTTGAATATGCAGGAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATGGTAAGCGCTTAAAATTCTCTATAAAAGACTTAAATATATCTATTGAAAATATTACTGAGATAATAGTTTGTTTTAAGTCGAAAAATAAGTATTTGAACTTAAAGTTTGTGTCTGGACATGAACTCCATTTGAAAAAAAAAAGAAGGTTAAAGCGAAAACAATTATCTCACTCAAAAATGCTACTCAGACAAGTTAATTCCATACTATACCAGCCTTTCAAATGCTAAAATGTTCACCAATTGCGAATACTGATGGACAAACTTCACCTTTAAGTATTTGCAAGTGAAGTCATGACCAAACACTAGTGTAAATCTAAAGAACTCAGAGAAGTGAGTAATAAGTACAAAATTCATGTAAACATGACAGAAAATATTGATTCTAAATGTACTCTGATTGTGCAGTGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAGGTATAACTCTGCTCCATTTTTCTTCCAACTTTTCATTTTCTAACCACGTAAAGCATAATCTAACTGGTTCACAATGGCAGGTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</genome_strand>
        <mrna_strand>CAAATTAAGCAGA.............................................................................................GAAGATATGTCATTTGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG................................................................................GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554065" ref_strand="-" ref_description="SGN-E554065 [cTSC-3-B8]">
      <seq>caaaatgggagaaaagggtggattgtttagtaaaaaagcatccgcgagcatgtgagcgtaagcccgaaactaacagaaactttaaagggaaaattgagccttggagcaaaaatccttcaagtaggagggttggagaaaatattcaggcagaagttcagtgttagagatgatgaaaagctattgaatgtttctcaatgctatttatcaacgacagctggtccaatagcaggccttctcttcatctctaccgataagattgctttctgcagcgagagatcaataaagctcttatctccaactggaaagttgcttagaatctactataaggtaaccatcccaataagtaagataatgaaagcaaaagagagcaaaaatatgcaaaagccatcacagaagtatatacaagtaattacagaggatgattttgagttctggtttatgggattcctcaatcatcaaaagacactgagatatctgcagcaggcaatctccagctcaagcaagttatgaagacacatttttttttgtaatgagctcgttcttcaatgtaaaacgttcatgcaaaaacgaattcagggatctgttaaaactttgtaactagatccattgctcaaaggaggcttaaggtttaacctttgtgcccttaagagttaatgggaatgtatagacttttttttctctaaaactggtagcttttgtatagacttattttgttttttgagatagcaagcagatacgaatgtacaaatttattataaaacttgtggagatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="37966" stop="39818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38266" g_stop="38315" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38316" i_stop="38716" i_length="401">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38717" g_stop="38991" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="327" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38992" i_stop="39071" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39072" g_stop="39518" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="775" r_length="448" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E554065" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38266" e_stop="38315"/>
          <exon e_start="38717" e_stop="38991"/>
          <exon e_start="39072" e_stop="39518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGGGAGA-AAGGGTGGATTGTCTAGTA-AAAAGCATCCGCGAGCATGGTAAGCGCTTAAAATTCTCTATAAAAGACTTAAATATATCTATTGAAAATATTACTGAGATAATAGTTTGTTTTAAGTCGAAAAATAAGTATTTGAACTTAAAGTTTGTGTCTGGACATGAACTCCATTTGAAAAAAAAAAGAAGGTTAAAGCGAAAACAATTATCTCACTCAAAAATGCTACTCAGACAAGTTAATTCCATACTATACCAGCCTTTCAAATGCTAAAATGTTCACCAATTGCGAATACTGATGGACAAACTTCACCTTTAAGTATTTGCAAGTGAAGTCATGACCAAACACTAGTGTAAATCTAAAGAACTCAGAGAAGTGAGTAATAAGTACAAAATTCATGTAAACATGACAGAAAATATTGATTCTAAATGTACTCTGATTGTGCAGTGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAGGTATAACTCTGCTCCATTTTTCTTCCAACTTTTCATTTTCTAACCACGTAAAGCATAATCTAACTGGTTCACAATGGCAGGTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAG-AGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</genome_strand>
        <mrna_strand>CAAAATGGGAGAAAAGGGTGGATTGTTTAGTAAAAAAGCATCCGCGAGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG................................................................................GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTGTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGCAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715163" ref_strand="+" ref_description="SGN-E715163 [FB13CB05]">
      <seq>aagattttgaaggtcagtaactgtccaaagatcactgttgaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacgatcttgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaggcctgatggggatcatacagtgtaattatcaccttctttgcctaagacctaaaatatgactttggaagctcctgatgtcagtcccttgttcccattaatttgccttttgttaagcatcaagtttttctgttgtagattattccctgcttttcagtcatttgatatcaaactcctgtatatcatccttgtaaactactagttagccccaatgtttgctgtaggtgttttcagattgtgaatgaaatgaatccattgctgctagtttgaatgtgaacttataccaatcatgatggtttaattgattacnaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40723" stop="39578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40423" g_stop="39879" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="568"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E715163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40423" e_stop="39879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTATACCAATCATGATGGTTTAATTGATTACAC</genome_strand>
        <mrna_strand>AAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTATACCAATCATGATGGTTTAATTGATTACNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715165" ref_strand="+" ref_description="SGN-E715165 [FB13CB07]">
      <seq>aagattttgaaggtcagtaactgtccaaagatcactgttgaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacgatcttgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaggcctgatggggatcatacagtgtaattatcaccttctttgcctaagacctaaaatatgactttggaagctcctgatgtcagtcccttgttcccattaatttgccttttgttaagcatcaagtttttctgttgtagattattccctgcttttcagtcatttgatatcaaactcctgtatatcatccttgtaaactactagttagccccaatgtttgctgtaggtgttttcagattgtgaatgaaatgaatccattgctgctagtttgaatgtgaacttataccaatcatgatggtttaattgattacaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40723" stop="39578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40423" g_stop="39879" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="568"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E715165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40423" e_stop="39879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTATACCAATCATGATGGTTTAATTGATTACAC</genome_strand>
        <mrna_strand>AAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTATACCAATCATGATGGTTTAATTGATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701555" ref_strand="+" ref_description="SGN-E701555 [FA16BC03]">
      <seq>attaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgacattgaagttgttggattgctataaagttggtgatgactctatcttatccttggccaaccactgcaaaaatcttgagacactcgttattggtggttgccgtaacatatcagatgagtccatgaagtcactggcagcttcttgtagtaatagtctgaggaaactgaggatggattggtgcttgaatattacagactcttcattggactgcatcctttccaaatgcagagagcttgaggttctcgacattggctgctgtgaggagttaactgatgctgcatttcaacaattaggaagtgacaactttatgttggggatgaagattttgaaggtcagtaactgtccaaagatcactgttgaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacgatcttgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaggcctgatggggatcatacagtgtaattatcaccttctttgcctaagacctaaaatatgactttggaagctcctgatgtcagtcccttgttcccattaatttgccttttgttaagcatcaagtttttctgttgtagattattccctgcttttcagtcatttgatatncaactcctgtatatcatccttgtaaactactagttagccccaatgtttgctgtaggtgttttcagattgtgaatgaaatgaatccattgctgctagtttgaatgtgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="41113" stop="39613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40813" g_stop="39908" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E701555" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40813" e_stop="39908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTAT</genome_strand>
        <mrna_strand>ATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATNCAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239235" ref_strand="+" ref_description="SGN-E239235 [cLEL-9-K10](-)">
      <seq>cagactgttgaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacgatcttgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaggcctgatggggatcatacagtgtaattatcaccttctttgcctaagacctaaaatatgactttggaagctcctgatgtcagtcccttgttcccattaatttgccttttgttaagcatcaagtttttctgttgtagattattccctgcttttcagtcatttgatatcaaactcctgtatatcatccttgtaaactactagttagccccaatgtttgctgtaggtgttttcagattgtgaatgaaatgaatccattgctgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40690" stop="39626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40393" g_stop="39926" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="484"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E239235" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40393" e_stop="39926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTA</genome_strand>
        <mrna_strand>CAGACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239171" ref_strand="+" ref_description="SGN-E239171 [cLEL-9-K10](-)">
      <seq>gaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacggtcnntgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaggcctgatggggatcatacagtgtaattatcaccttctttgcctaagacctaaaatatgactttggaagctcctgatgtcagtcccttgttcccattaatttgccttttgttaagcatcaagtttttctgttgtagattattccctgcttttcagtcatttgatatcaaactcctgtatatcatccttgtaaactactagttagccccaatgtttgctgtaggtgttttcagattgtgaatgaaatgaatccattgctgctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40684" stop="39626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40384" g_stop="39926" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="476"/>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E239171" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40384" e_stop="39926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATC-TTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTA</genome_strand>
        <mrna_strand>GAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGGTCNNTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354209" ref_strand="+" ref_description="SGN-E354209 [cTOS-16-A10]">
      <seq>cgttattggtggttgccgtaacatatcagatgagtccatgaagtcactggcagcttcttgtagtaatagtctgaggaaactgaggatggattggtgcttgaatattacagactcttcattggactgcatcctttccaaatgcagagagcttgaggttctcgacattggctgctgtgaggagttaactgatgctgcatttcaacaattaggaagtgacaactttatgttggggatgaagattttgaaggtcagtaactgtccaaagatcactgttgaaggaattaagaagcttatgaagtcatgcaaatttcttgaatatctagacgtacgatcttgtccccttatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgttttagcaatgtctttgaaagcctgatggggatcatacagtgtaattatcaccttctttgcctaagactaaaatatgactttggaagctcctgatgtcagtcccttgttccccattatttgccttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="40958" stop="39775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40658" g_stop="40075" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E354209" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40658" e_stop="40075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTA</genome_strand>
        <mrna_strand>CGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAAGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGA-CTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCCATTATTTGCCTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474256" ref_strand="+" ref_description="SGN-E474256 [cSTB-35-P8]">
      <seq>ctgaagcttgttcattgacacttaggacattgaagttgttggattgctacaaagttggtgatgactccatcttatccttggccaactactgcaaaaatcttgagacacttgttattggtggttgccgtaacatatcagatgagcctatgaagtcactggcagcttcttgtagtaatagtctgaggaaactgaggatggattggtgtttgaatattactgactcttcattggactgcatcatttccaaatgcagagagcttgaggttctcgacattggctgctgtgaggagttaactgatgctgcatttcaacaattaggaagtgaaaacattatgttggggatgaagattttgaaggtcagtaactgtccaaagataactgttgaaggaattaagaagcttatgaagtcatgtgaatatcttgaatatctagacgtacggtcttgtcccctaatcactaaagcagggtgtgaggaggctggaattcagtttcctgaatcctgcaaaataaacttcactggaagcttagcagagccagatgtgttactttgagcagtacttgatttagcaatgtctttgaaagactgaaagggatcatgcagtgaaattatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="41067" stop="39855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40767" g_stop="40154" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E474256" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40767" e_stop="40154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACC</genome_strand>
        <mrna_strand>CTGAAGCTTGTTCATTGACACTTAGGACATTGAAGTTGTTGGATTGCTACAAAGTTGGTGATGACTCCATCTTATCCTTGGCCAACTACTGCAAAAATCTTGAGACACTTGTTATTGGTGGTTGCCGTAACATATCAGATGAGCCTATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGTTTGAATATTACTGACTCTTCATTGGACTGCATCATTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGAAAACATTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATAACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGTGAATATCTTGAATATCTAGACGTACGGTCTTGTCCCCTAATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGATTTAGCAATGTCTTTGAAAGACTGAAAGGGATCATGCAGTGAAATTATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698288" ref_strand="+" ref_description="SGN-E698288 [FA05DD02]">
      <seq>cgtttgaatattgcatctttctggctgtagatttgtctcagattctttaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgacattgaagttgttggattgctataaagttggtgatgactctatcttatccttggccaaccactgcaaaaatcttgagacactcgctattggtggttgccgtaacatatcagatgagtccatgaagtcactggcagcttcttgtactaatactctgaggaaactgaggatggattggtgcttgaatattacagactcttcattggactgcatcctttccaaatgcagagagcttgaggttctcgacattggctgctgtgaggagttaactgatgctgcatttcaacaattaggaagtgacaactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="41285" stop="40134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40985" g_stop="40434" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E698288" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40985" e_stop="40434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTAT</genome_strand>
        <mrna_strand>CGTTTGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCTTTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGCTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTACTAATACTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304341" ref_strand="+" ref_description="SGN-E304341 [cLEX-12-N15]">
      <seq>actgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgacattgaagttgttggattgctataaagttggtgatgactctatcttatccttggccaaccactgcaaaaatcttgagacactcgttattggtggttgccgtaacatatcagatgagtccatgaagtcactggcagcttcttgtagtaatagtctgaggaaactgaggatggattggtgcttgaatattacagactcttcattggactgcatcctttccaaatgcggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="41326" stop="40210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41026" g_stop="40510" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E304341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41026" e_stop="40510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGC</genome_strand>
        <mrna_strand>ACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400877" ref_strand="+" ref_description="SGN-E400877 [PPC-2-K22]">
      <seq>gaaaaatcgcggccagattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttacgaattctcaatcttcagaactgtaaaggcataacagacaatggattggcagcgattggatcaagtctctcttctttacagtccttagatgtatcctactgcagaaagatcacagacaaggggctttcagctgttgctgaggggtgtcatgacttgagaacgttgcatcttgctggctgtagatttgtctcagattcattaatgaaagctctctccaagaattgtcattatgtagaagagctaggtttgcaaggatgcaccaacattaccaactcaggtctctctgttttggttgaaggttgccggaggataaagtatttggacattaacaaatgcagcaatattggtgatattgggataactagcgtgtctgaagcttgttcattgacacttaggacattgaagttgttggattgctacaaagttggtgatgactccatcttatccttggccaactactgcacaaatcttgagacacttgttattggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42266" stop="40347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41966" g_stop="41814" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40647" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="616" r_length="463" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E400877" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41966" e_stop="41814"/>
          <exon e_start="41109" e_stop="40647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGG</genome_strand>
        <mrna_strand>GAAAAATCGCGGCCAGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTACGAATTCTCAATCTTCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAATGGATTGGCAGCGATTGGATCAAGTCTCTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACAGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAACGTTGCATCTTGCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCAAGAATTGTCATTATGTAGAAGAGCTAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTTTGGTTGAAGGTTGCCGGAGGATAAAGTATTTGGACATTAACAAATGCAGCAATATTGGTGATATTGGGATAACTAGCGTGTCTGAAGCTTGTTCATTGACACTTAGGACATTGAAGTTGTTGGATTGCTACAAAGTTGGTGATGACTCCATCTTATCCTTGGCCAACTACTGCACAAATCTTGAGACACTTGTTATTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703110" ref_strand="+" ref_description="SGN-E703110 [FA20CD02]">
      <seq>gataacttctctttctttccagtataagatcagaaccataaacttctccgatggccggcgccggcgacgattctcatctgcagaacgacgtcgtttcagtccactgtataaacgacagtctcggcgacgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcgtcccgattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttgcgaattctcaatctgcagaactgtaaaggcataacagacaaaggattggctgctattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgacattgaagttgttggattgctataaaagtggtgatgactctatcttatccttggccaaccactgcaaaaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42533" stop="40366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42233" g_stop="41814" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40666" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="864" r_length="444" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E703110" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42233" e_stop="41814"/>
          <exon e_start="41109" e_stop="40666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTG</genome_strand>
        <mrna_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAAGTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703536" ref_strand="+" ref_description="SGN-E703536 [FA21DB05]">
      <seq>gataacttctctttctttccagtataagatcagaaccataaacttctccgatggccggcgccggcgacgattctcatctgcagaacgacgtcgtttcagtccactgtataaacgacagtctcggcgacgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcgtcccgattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttgcgaattctcaatctgcagaactgtaaaggcataacagacaaaggattggctgctattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgacattgaagttgttggattgctataaagttggtgatgactctatcttatccttggccaaccactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42533" stop="40373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42233" g_stop="41814" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40673" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="857" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E703536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42233" e_stop="41814"/>
          <exon e_start="41109" e_stop="40673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAA</genome_strand>
        <mrna_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704866" ref_strand="+" ref_description="SGN-E704866 [FA25CA03]">
      <seq>atgaaaagataacttctctttctttccagtataagatcagaaccataaacttctccgatggccggcgccggcgacgattctcatctgcagaacgacgtcgtttcagtccactgtataaacgacagtctcggcgacgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcgtcccgattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttgcgaattctcaatctgcagaactgtaaaggcataacagacaaaggattggctgctattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaacgctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatcaatattggtgatattgggatatctagtgtgtctgaagcttgttcattgacactcatgaccttgaagttgttggattgctataaaagttggtgatgactctatcttatccttggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42540" stop="40384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42240" g_stop="41814" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40684" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="854" r_length="427" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E704866" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42240" e_stop="41814"/>
          <exon e_start="41109" e_stop="40684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAAGATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTAT-AAAGTTGGTGATGACTCTATCTTATCCTTGGCCA</genome_strand>
        <mrna_strand>ATGAAAAGATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAACGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACCTTGAAGTTGTTGGATTGCTATAAAAGTTGGTGATGACTCTATCTTATCCTTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697542" ref_strand="+" ref_description="SGN-E697542 [FA03BB12]">
      <seq>ccgctttctttccagtataagatcagaaccataaacttctcccatggccggcgccggcgacgattctcatctgcagaacgacgtcgtttcagtccactgtataaacgacagtctcggcgacgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcgtcccgattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttgcgaattctcaatctgcagaactgtaaaggcataacagacaaaggattggctgctattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaccaaatgcatcaatattggtgatattgggatatctagtgtgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42525" stop="40465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42226" g_stop="41814" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40765" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="758" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E697542" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42226" e_stop="41814"/>
          <exon e_start="41109" e_stop="40765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTG</genome_strand>
        <mrna_strand>CCGCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCCATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTACCAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709037" ref_strand="+" ref_description="SGN-E709037 [FA42CA08]">
      <seq>gataacttctctttctttccagtataagatcagaaccataaacttctccgatggccggcgccggcgacgattctcatctgcagaacgacgtcgtttcagtccactgtataaacgacagtctcggcgacgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcgtcccgattcactcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttgcgaattctcaatctgcagaactgtaaaggcataacagacaaaggattggctgctattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaatattgcatctttctggctgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacattaccaactcaggtctctctgttatggttgaaggttgccggaggataaagcatttggacattaacaaatgcatccatattggtgatattgggaaatctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42533" stop="40471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42233" g_stop="41814" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40771" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="759" r_length="339" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E709037" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42233" e_stop="41814"/>
          <exon e_start="41109" e_stop="40771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTG</genome_strand>
        <mrna_strand>GATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCCATATTGGTGATATTGGGAAATCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690306" ref_strand="+" ref_description="SGN-E690306 [LH_Ea03C16]">
      <seq>tagaaccataaacttctccgatggccggcgccggcgactattctcgtctgcagagcgacatcgtttcagtccactgtataaacgacagtctcggcgatgatgagcttcgggccgtactgtcgagacttggagacgacaaagacaaggaagttttcgggctggtatgtaagcggtggcttcgtattcaaagtactgaaaggaagaagctttgtgctcgggccgggcctcacatgctcagaagaatcgcggcccgattcattcgattacatgagcttgatctatctcaatcggtttctagatctttctatcctggtgttactgattctgatctttcagttattgctactgctttctcttgcttacgaattctcaatcttcagaactgtagaggcataacagacaaaggattggctgcgattggatcaagtctgtcttctttacagtccttagatgtatcctactgcagaaagatcactgacaaggggctttcagctgttgctgaggggtgtcatgacttgagaacattgcatcttgctggatgtagatttgtctcagattcattaatgaaagctctctccgagaattgccataatgtggaagagataggtttgcaaggatgcaccaacatttccaactcaggtctctctgttctggttgaaggttgccggaggataaaccatttggacattaacaaatgcatccatattggtgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="-" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="42502" stop="40483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42203" g_stop="41814" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41109" g_stop="40783" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="717" r_length="327" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="-" ref_id="SGN-E690306" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42203" e_stop="41814"/>
          <exon e_start="41109" e_stop="40783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAGGTTCGTTTTTGTATTTTTTTCTGAAGTTTTATAGTTTGAAATTTGTTGAATTTGAATGGTCATTGCTGAAGTGAACCTGAGCTACTGCAGGAGAGGCCAAATGCACCAATCAGTAGTCGTACTCGTATATGTAGTGATACTTCACATCTAGTACCGATTTAAAATCTTGAATTTGTTTCTCTGTGGGATGGTTGAGCGGGCTTTTCATTAAGATAAACACACAAAGCAGTTGAAGGGGTCAACATTTATTATATATATACACATAAAACATAATTTTATCCATGTATAACCTGTTCGGATGAACCCCTGGCCCCTTACTAGCTCTGCCCCTGTCTGTGTGAGGTGTTGGATGTATTGTTCCCAACTTGGACATAAAGGTTTTGACCTGATGTGGCGAAGACTGCCTCTTCCTCTTTTCTATCTTGTAAATAATGGGTTATTATGATGAAAATGGAGTAATGGGGTTTGTGGAGGATTTTAGGGGATTTATGGTTGTTTTTTTTAGGACAATTAATTGCAAATTTGTAGGATTTTGTGTTTCTGCCTAAAGATTATGTCTTTTTTTCTATGTGGTTTTTGTTGTGGTAGGAACAGGCTATTATATCATATGTATTCCATTTTTCAAGAGTGTAACTTTATTGTGAATCTAAGGCTCAGATGCTTCCTTGACTTAACTTGCACGGTTTTATGGTCCAAACATACAGGCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTG</genome_strand>
        <mrna_strand>TAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACTATTCTCGTCTGCAGAGCGACATCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGATGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGGCCCGATTCATTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTACGAATTCTCAATCTTCAGAACTGTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAACAGACAAAGGATTGGCTGCGATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAACATTGCATCTTGCTGGATGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTTCCAACTCAGGTCTCTCTGTTCTGGTTGAAGGTTGCCGGAGGATAAACCATTTGGACATTAACAAATGCATCCATATTGGTGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394242" ref_strand="+" ref_description="SGN-E394242 [TUS-14-E15]">
      <seq>aaaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagcggcggagggcgtatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="45706" stop="46714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46006" g_stop="46493" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E394242" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46006" e_stop="46493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGC-TCTGA-CACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTT</genome_strand>
        <mrna_strand>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCGGCGGAGGGCGTATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202378" ref_strand="+" ref_description="SGN-E202378 [cLEC-6-H6]">
      <seq>aaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagctctgacacatatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctctttaccgtctttagagttcaagtctccagaaatttgatttgtgtccatgacagaattgattatataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="45707" stop="46714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46007" g_stop="46558" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E202378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46007" e_stop="46558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAG</genome_strand>
        <mrna_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210078" ref_strand="+" ref_description="SGN-E210078 [cLEC-40-E24]">
      <seq>aaagaatgtgaatttagcagaaaggtaccgcttaaaaaatcatactcatacttaaacactgaaggacattcagaaatggttgcactaacaaattatcgggaatgaattacaaaatttgaaccccttctaactttggactgccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactagctacctcataggattccaaatgaatatatgttgtatcaactattactctgcagggaataacactcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagcagacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagctctgacacatatttcatgtctcccttgtgaagggcatacctaacacgagtagatgatacttgccctctctctttaccgtctttagagttcaagtctccagaaatttgatttgtgtccatgacagaattgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="45707" stop="46714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46007" g_stop="46552" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E210078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46007" e_stop="46552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTA</genome_strand>
        <mrna_strand>AAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619641" ref_strand="+" ref_description="SGN-E619641 [70334]">
      <seq>ttttttttttttcagaaatggttgcactaaaaaattatagggaatgaattacaaaatttgaaccccgtctaactctggactaccaaagtcaatacccaatatctttaagtcttgagaagtaacacaggaaaaactatctacctcatagcattccaaatgaatatctgttgtatcaactattactctgcagggtataacattcttgtcaatcaaaactgaacaattctcataaagaccttccttaggtgcaagattcaacaaacaagactttggagctgacagcctatttctctcactagtaaacctttcttggtcttccatcattaaaataagacgatggttccgacctaatagctctgacacatatttcatgtctcccttgtgaagggcatacctcacacgagtagatgatacttgccctgctctctttttccgtcattagagtttaaggctccagaaatttgatttgtgtccatgacagaattgattatataggcctctaatccatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0203K06-jCCww/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0203K06.1" temp_strand="+" temp_description="C04HBa0203K06.1  CU929467.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0203K06 sequenced_by:sanger upload_account_name:uk">
        <position start="45775" stop="46714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46074" g_stop="46575" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="513" r_length="504" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0203K06.1" gen_strand="+" ref_id="SGN-E619641" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0203K06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46074" e_stop="46575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCT-CTCTC-TTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAGCCTCTAATCCATACTCC</genome_strand>
        <mrna_strand>TTTCAGAAATGGTTGCACTAAAAAATTATAGGGAATGAATTACAAAATTTGAACCCCGTCTAACTCTGGACTACCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTATCTACCTCATAGCATTCCAAATGAATATCTGTTGTATCAACTATTACTCTGCAGGGTATAACATTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCTGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTCACACGAGTAGATGATACTTGCCCTGCTCTCTTTTTCCGTCATTAGAGTTTAAGGCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAGGCCTCTAATCCATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8615" PGL_stop="33"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8615" e_stop="8587"/>
            <exon e_start="876" e_stop="791"/>
            <exon e_start="501" e_stop="33"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="0.897"/>
          <exon-intron don_prob="0.992" acc_prob="0.861" e_score="0.977"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="8615" e_stop="8587" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8586" i_stop="877" i_length="7710"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="876" e_stop="791" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.861">
            <gDNA_intron_boundary i_start="790" i_stop="502" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="501" e_stop="33" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8615" stop="8587"/>
              <exon start="876" stop="791"/>
              <exon start="501" stop="33"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="791"/>
              <exon start="501" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAAGAAGAAACAGCCAAACTAAATTG : GATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG : ATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAAGCAAATACTCCGAGATTTGATGTTACTAAAAA</gDNA_template>
            <first_frame> T  K  E  E  T  A  K  L  N  W :   I  Y  R  S  R  K  R  D  G  T  L  H  *  N  R  *  S  N  S  T  A  F  S  N  L  S  R  *   : D  R  R  R  D  E  S  G  S  F  I  *  E  F  I  Q  F  A  C  *  T  N  *  H  I  Q  S  K  C  G  A  T  *  I  K  S  R  C  L  Y  T  K  D  G  L  Y  W  S  L  P  *  W  K  T  S  I  S  S  N  A  K  E  Q  T  I  V  P  T  T  V  S  *  T  K  G  E  S  *  F  G  *  L  H  Q  *  V  G  G  G  S  K  E  L  L  R  *  Y  R  R  P  Q  Y  W  K  P  R  I  L  Q  D  V  V  T  *  W  L  F  C  G  *  V  Y  S  R  A  C  *  D  R  P  K  T  R  R  R  N  H  Q  K  *  H  W  L  H  I  *  A  N  T  P  R  F  D  V  T  K   </first_frame>
            <second_frame>  Q  K  K  K  Q  P  N  *  I   : G  F  I  V  Q  E  K  G  M  E  H  S  I  E  I  D  D  Q  I  P  L  L  S  Q  T  Y  Q  D  E  :  I  E  G  G  M  K  V  D  P  L  F  E  N  L  F  N  S  R  V  K  P  I  S  I  F  K  V  N  V  G  L  R  E  S  N  P  D  A  Y  T  P  K  M  V  S  I  G  P  Y  H  N  G  K  P  Q  F  R  P  M  Q  K  N  K  L  L  Y  L  R  R  F  L  R  R  K  E  S  L  D  L  D  S  C  I  N  E  L  E  E  E  A  R  N  C  Y  D  D  I  E  D  L  N  I  G  S  R  E  F  C  K  M  L  L  L  D  G  C  F  V  V  E  F  I  R  E  R  V  E  I  G  P  R  L  E  D  E  I  I  K  S  D  I  G  C  I  Y  K  Q  I  L  R  D  L  M  L  L  K  </second_frame>
            <third_frame>   K  R  R  N  S  Q  T  K  L  :  D  L  S  F  K  K  K  G  W  N  T  P  L  K  *  M  I  K  F  H  C  F  L  K  L  I  K  M  R :   *  K  E  G  *  K  W  I  L  Y  L  R  I  Y  S  I  R  V  L  N  Q  L  A  Y  S  K  *  M  W  G  Y  V  N  Q  I  Q  M  L  I  H  Q  R  W  S  L  L  V  L  T  I  M  E  N  L  N  F  V  Q  C  K  R  T  N  Y  C  T  Y  D  G  F  L  D  E  R  R  V  L  I  W  I  V  A  S  M  S  W  R  R  K  Q  G  I  V  T  M  I  *  K  T  S  I  L  E  A  A  N  F  A  R  C  C  Y  L  M  V  V  L  W  L  S  L  F  E  S  V  L  R  *  A  Q  D  *  K  T  K  S  S  K  V  T  L  V  A  Y  I  S  K  Y  S  E  I  *  C  Y  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203K06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8590" stop="8587"/>
                    <exon start="876" stop="791"/>
                    <exon start="501" stop="34"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFIVQEKGMEHSIEIDDQIPLLSQTYQDEIEGGMKVDPLFENLFNSRVKPISIFKVNVGLRESNPDAYTPKMVSIGPYHNGKPQFRPMQKNKLLYLRRFLRRKESLDLDSCINELEEEARNCYDDIEDLNIGSREFCKMLLLDGCFVVEFIRERVEIGPRLEDEIIKSDIGCIYKQILRDLMLLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="878" e_stop="791"/>
            <exon e_start="501" e_stop="80"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.861" e_score="0.977"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="878" e_stop="791" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.861">
            <gDNA_intron_boundary i_start="790" i_stop="502" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="501" e_stop="80" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="878" stop="791"/>
              <exon start="501" stop="138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="876" stop="791"/>
              <exon start="501" stop="80"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG : ATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACAT</gDNA_template>
            <first_frame> R  I  Y  R  S  R  K  R  D  G  T  L  H  *  N  R  *  S  N  S  T  A  F  S  N  L  S  R  *   : D  R  R  R  D  E  S  G  S  F  I  *  E  F  I  Q  F  A  C  *  T  N  *  H  I  Q  S  K  C  G  A  T  *  I  K  S  R  C  L  Y  T  K  D  G  L  Y  W  S  L  P  *  W  K  T  S  I  S  S  N  A  K  E  Q  T  I  V  P  T  T  V  S  *  T  K  G  E  S  *  F  G  *  L  H  Q  *  V  G  G  G  S  K  E  L  L  R  *  Y  R  R  P  Q  Y  W  K  P  R  I  L  Q  D  V  V  T  *  W  L  F  C  G  *  V  Y  S  R  A  C  *  D  R  P  K  T  R  R  R  N  H  Q  K  *  H </first_frame>
            <second_frame>  G  F  I  V  Q  E  K  G  M  E  H  S  I  E  I  D  D  Q  I  P  L  L  S  Q  T  Y  Q  D  E  :  I  E  G  G  M  K  V  D  P  L  F  E  N  L  F  N  S  R  V  K  P  I  S  I  F  K  V  N  V  G  L  R  E  S  N  P  D  A  Y  T  P  K  M  V  S  I  G  P  Y  H  N  G  K  P  Q  F  R  P  M  Q  K  N  K  L  L  Y  L  R  R  F  L  R  R  K  E  S  L  D  L  D  S  C  I  N  E  L  E  E  E  A  R  N  C  Y  D  D  I  E  D  L  N  I  G  S  R  E  F  C  K  M  L  L  L  D  G  C  F  V  V  E  F  I  R  E  R  V  E  I  G  P  R  L  E  D  E  I  I  K  S  D   </second_frame>
            <third_frame>   D  L  S  F  K  K  K  G  W  N  T  P  L  K  *  M  I  K  F  H  C  F  L  K  L  I  K  M  R :   *  K  E  G  *  K  W  I  L  Y  L  R  I  Y  S  I  R  V  L  N  Q  L  A  Y  S  K  *  M  W  G  Y  V  N  Q  I  Q  M  L  I  H  Q  R  W  S  L  L  V  L  T  I  M  E  N  L  N  F  V  Q  C  K  R  T  N  Y  C  T  Y  D  G  F  L  D  E  R  R  V  L  I  W  I  V  A  S  M  S  W  R  R  K  Q  G  I  V  T  M  I  *  K  T  S  I  L  E  A  A  N  F  A  R  C  C  Y  L  M  V  V  L  W  L  S  L  F  E  S  V  L  R  *  A  Q  D  *  K  T  K  S  S  K  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203K06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="877" stop="791"/>
                    <exon start="501" stop="82"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFIVQEKGMEHSIEIDDQIPLLSQTYQDEIEGGMKVDPLFENLFNSRVKPISIFKVNVGLRESNPDAYTPKMVSIGPYHNGKPQFRPMQKNKLLYLRRFLRRKESLDLDSCINELEEEARNCYDDIEDLNIGSREFCKMLLLDGCFVVEFIRERVEIGPRLEDEIIKSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="33133" PGL_stop="33481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33133" e_stop="33481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33133" e_stop="33481" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33133" stop="33481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33187" stop="33481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGGAAAAGCCATCACAGAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</gDNA_template>
            <first_frame> Y  G  K  A  I  T  E  V  Y  T  V  S  Y  R  G  R  L  R  V  L  V  Y  G  V  L  *  *  S  K  N  S  K  I  S  A  A  G  N  F  N  F  H  K  L  Q  S  A  K  T  I  V  F  *  F  Y  F  V  S  *  Y  T  H  S  S  M  *  N  V  D  A  R  C  R  Y  V  Q  T  C  N  *  L  H  C  S  K  E  V  L  D  F  L  G  F  K  P  K  L  L  I  R  M  Y  R  L  I  V  K  L  I  K  Q  E  A  N  S  S  </first_frame>
            <second_frame>  M  E  K  P  S  Q  K  Y  I  Q  L  V  T  E  D  D  Y  E  F  W  F  M  G  F  F  N  N  Q  K  T  L  R  Y  L  Q  Q  A  I  S  T  F  T  N  F  N  Q  L  R  R  *  F  F  N  F  I  L  F  P  N  T  P  I  H  Q  C  K  M  L  M  Q  D  A  D  M  F  K  L  V  T  S  S  I  A  Q  R  R  F  *  I  F  *  A  L  S  L  S  C  *  Y  E  C  I  D  L  L  *  N  *  S  N  R  R  L  I  H  L </second_frame>
            <third_frame>   W  K  S  H  H  R  S  I  Y  S  *  L  Q  R  T  I  T  S  S  G  L  W  G  S  L  I  I  K  K  L  *  D  I  C  S  R  Q  F  Q  L  S  Q  T  S  I  S  *  D  D  S  F  L  I  L  F  C  F  L  I  H  P  F  I  N  V  K  C  *  C  K  M  Q  I  C  S  N  L  *  L  A  P  L  L  K  G  G  F  R  F  F  R  L  *  A  *  V  V  N  T  N  V  *  T  Y  C  K  T  N  Q  T  G  G  *  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0203K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="37943" PGL_stop="39518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37943" e_stop="38147"/>
            <exon e_start="38241" e_stop="38315"/>
            <exon e_start="38717" e_stop="38991"/>
            <exon e_start="39072" e_stop="39518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37943" e_stop="38147" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38148" i_stop="38240" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38241" e_stop="38315" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38316" i_stop="38716" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38717" e_stop="38991" e_length="275"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38992" i_stop="39071" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39072" e_stop="39518" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37943" stop="38147"/>
              <exon start="38241" stop="38315"/>
              <exon start="38717" stop="38987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37973" stop="38147"/>
              <exon start="38241" stop="38315"/>
              <exon start="38717" stop="38991"/>
              <exon start="39072" stop="39247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38135" stop="38147"/>
              <exon start="38241" stop="38315"/>
              <exon start="38717" stop="38991"/>
              <exon start="39072" stop="39518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555379" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38266" stop="38315"/>
              <exon start="38717" stop="38991"/>
              <exon start="39072" stop="39518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554065" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGA : GAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG : TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG : GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</gDNA_template>
            <first_frame> S  H  I  P  S  K  Y  S  N  T  P  P  Q  T  R  I  T  M  D  L  L  R  G  N  S  V  G  I  P  M  S  S  S  V  G  S  L  E  S  Q  P  K  R  L  L  A  L  P  A  C  E  D  H  I  V  P  Y  A  T  S  K  N  L  S  Q  I  K  Q   : R  R  Y  V  I  G  K  M  N  K  L  G  E  R  V  D  C  L  V  K  S  I  R  E  H   : V  S  L  S  P  K  L  T  E  T  L  K  G  K  L  S  L  G  A  K  I  L  Q  V  G  G  L  E  K  I  F  R  Q  K  F  S  V  R  D  D  E  K  L  L  N  V  S  Q  C  Y  L  S  T  T  A  G  P  I  A  G  L  L  F  I  S  T  D  K  I  A  F  C  S  E  R  S  I  K  L  L  S  P  T  G  K  L  L  R  I  Y  Y  K  :  V  T  I  P  I  S  K  I  M  K  A  K  E  S  K  N  M  Q  K  P  S  Q  K  Y  I  Q  V  I  T  E  D  D  F  E  F  W  F  M  G  F  L  N  H  Q  K  T  L  R  Y  L  Q  Q  A  I  S  S  S  S  K  L  *  R  H  I  F  F  S  N  E  L  V  L  Q  C  K  T  F  M  Q  K  R  I  Q  G  S  V  K  T  L  *  L  D  P  L  L  K  G  G  L  R  F  N  L  C  A  L  K  S  *  W  E  C  I  D  F  F  F  S  K  T  G  S  F  C  I  D  L  F  C  F  L  R  *  Q  E  I  R  M  Y  K  F  I  I  K  L  V  E  I  D </first_frame>
            <second_frame>  P  T  Y  L  Q  N  T  V  I  L  H  L  K  P  E  S  Q  W  T  Y  S  V  E  I  R  W  V  F  P  *  V  H  Q  *  V  H  L  K  A  S  R  K  D  Y  L  P  Y  L  L  A  K  T  I  S  F  H  M  Q  L  Q  R  T  C  L  K  L  S  R  :  E  D  M  S  L  V  R  *  T  N  W  E  K  G  W  I  V  *  *  K  A  S  A  S  M  :  *  A  *  A  R  N  *  Q  K  L  *  R  E  N  *  A  L  E  Q  K  S  F  K  *  E  G  W  R  K  Y  S  G  R  S  S  V  L  E  M  M  K  S  Y  *  M  F  L  N  A  I  Y  Q  R  Q  L  V  Q  *  Q  A  F  S  S  S  L  P  I  R  L  L  S  A  A  R  D  Q  *  S  S  Y  L  Q  L  E  S  C  L  E  S  T  I  R :   *  P  S  Q  *  V  R  *  *  K  Q  K  R  A  K  I  C  K  S  H  H  R  S  I  Y  K  *  L  Q  R  M  I  L  S  S  G  L  W  D  S  S  I  I  K  R  H  *  D  I  C  S  R  Q  S  P  A  Q  A  S  Y  E  D  T  F  F  F  L  M  S  S  F  F  N  V  K  R  S  C  K  N  E  F  R  D  L  L  K  L  C  N  *  I  H  C  S  K  E  A  *  G  L  T  F  V  P  L  R  V  N  G  N  V  *  T  F  F  S  L  K  L  V  A  F  V  *  T  Y  F  V  F  *  D  S  K  R  Y  E  C  T  N  L  L  *  N  L  W  R  *   </second_frame>
            <third_frame>   P  H  T  F  K  I  Q  *  Y  S  T  S  N  Q  N  H  N  G  L  T  P  W  K  F  G  G  Y  S  H  E  F  I  S  R  F  T  *  K  P  A  E  K  T  T  C  L  T  C  L  R  R  P  Y  R  S  I  C  N  F  K  E  L  V  S  N  *  A  E :   K  I  C  H  W  *  D  E  Q  I  G  R  K  G  G  L  S  S  K  K  H  P  R  A  C :   E  P  K  P  E  T  N  R  N  F  K  G  K  I  E  P  W  S  K  N  P  S  S  R  R  V  G  E  N  I  Q  A  E  V  Q  C  *  R  *  *  K  A  I  E  C  F  S  M  L  F  I  N  D  S  W  S  N  S  R  P  S  L  H  L  Y  R  *  D  C  F  L  Q  R  E  I  N  K  A  L  I  S  N  W  K  V  A  *  N  L  L  *   : G  N  H  P  N  K  *  D  N  E  S  K  R  E  Q  K  Y  A  K  A  I  T  E  V  Y  T  S  N  Y  R  G  *  F  *  V  L  V  Y  G  I  P  Q  S  S  K  D  T  E  I  S  A  A  G  N  L  Q  L  K  Q  V  M  K  T  H  F  F  F  *  *  A  R  S  S  M  *  N  V  H  A  K  T  N  S  G  I  C  *  N  F  V  T  R  S  I  A  Q  R  R  L  K  V  *  P  L  C  P  *  E  L  M  G  M  Y  R  L  F  F  L  *  N  W  *  L  L  Y  R  L  I  L  F  F  E  I  A  R  D  T  N  V  Q  I  Y  Y  K  T  C  G  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203K06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37943" stop="38147"/>
                    <exon start="38241" stop="38315"/>
                    <exon start="38717" stop="38991"/>
                    <exon start="39072" stop="39254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIPSKYSNTPPQTRITMDLLRGNSVGIPMSSSVGSLESQPKRLLALPACEDHIVPYATSKNLSQIKQRRYVIGKMNKLGERVDCLVKSIREHVSLSPKLTETLKGKLSLGAKILQVGGLEKIFRQKFSVRDDEKLLNVSQCYLSTTAGPIAGLLFISTDKIAFCSERSIKLLSPTGKLLRIYYKVTIPISKIMKAKESKNMQKPSQKYIQVITEDDFEFWFMGFLNHQKTLRYLQQAISSSSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="42240" PGL_stop="39879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42240" e_stop="41814"/>
            <exon e_start="41109" e_stop="39879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42240" e_stop="41814" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="41813" i_stop="41110" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="41109" e_stop="39879" e_length="1231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42240" stop="41814"/>
              <exon start="41109" stop="40684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42233" stop="41814"/>
              <exon start="41109" stop="40666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42233" stop="41814"/>
              <exon start="41109" stop="40673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42233" stop="41814"/>
              <exon start="41109" stop="40771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42226" stop="41814"/>
              <exon start="41109" stop="40765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42203" stop="41814"/>
              <exon start="41109" stop="40783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41966" stop="41814"/>
              <exon start="41109" stop="40647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41026" stop="40510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40985" stop="40434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40813" stop="39908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40767" stop="40154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40658" stop="40075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40423" stop="39879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40423" stop="39879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40393" stop="39926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40384" stop="39926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAAAGATAACTTCTCTTTCTTTCCAGTATAAGATCAGAACCATAAACTTCTCCGATGGCCGGCGCCGGCGACGATTCTCATCTGCAGAACGACGTCGTTTCAGTCCACTGTATAAACGACAGTCTCGGCGACGATGAGCTTCGGGCCGTACTGTCGAGACTTGGAGACGACAAAGACAAGGAAGTTTTCGGGCTGGTATGTAAGCGGTGGCTTCGTATTCAAAGTACTGAAAGGAAGAAGCTTTGTGCTCGGGCCGGGCCTCACATGCTCAGAAGAATCGCGTCCCGATTCACTCGATTACATGAGCTTGATCTATCTCAATCGGTTTCTAGATCTTTCTATCCTGGTGTTACTGATTCTGATCTTTCAGTTATTGCTACTGCTTTCTCTTGCTTGCGAATTCTCAATCTGCAGAACTGTAAAG : GCATAACAGACAAAGGATTGGCTGCTATTGGATCAAGTCTGTCTTCTTTACAGTCCTTAGATGTATCCTACTGCAGAAAGATCACTGACAAGGGGCTTTCAGCTGTTGCTGAGGGGTGTCATGACTTGAGAATATTGCATCTTTCTGGCTGTAGATTTGTCTCAGATTCATTAATGAAAGCTCTCTCCGAGAATTGCCATAATGTGGAAGAGATAGGTTTGCAAGGATGCACCAACATTACCAACTCAGGTCTCTCTGTTATGGTTGAAGGTTGCCGGAGGATAAAGCATTTGGACATTAACAAATGCATCAATATTGGTGATATTGGGATATCTAGTGTGTCTGAAGCTTGTTCATTGACACTCATGACATTGAAGTTGTTGGATTGCTATAAAGTTGGTGATGACTCTATCTTATCCTTGGCCAACCACTGCAAAAATCTTGAGACACTCGTTATTGGTGGTTGCCGTAACATATCAGATGAGTCCATGAAGTCACTGGCAGCTTCTTGTAGTAATAGTCTGAGGAAACTGAGGATGGATTGGTGCTTGAATATTACAGACTCTTCATTGGACTGCATCCTTTCCAAATGCAGAGAGCTTGAGGTTCTCGACATTGGCTGCTGTGAGGAGTTAACTGATGCTGCATTTCAACAATTAGGAAGTGACAACTTTATGTTGGGGATGAAGATTTTGAAGGTCAGTAACTGTCCAAAGATCACTGTTGAAGGAATTAAGAAGCTTATGAAGTCATGCAAATTTCTTGAATATCTAGACGTACGATCTTGTCCCCTTATCACTAAAGCAGGGTGTGAGGAGGCTGGAATTCAGTTTCCTGAATCCTGCAAAATAAACTTCACTGGAAGCTTAGCAGAGCCAGATGTGTTACTTTGAGCAGTACTTGTTTTAGCAATGTCTTTGAAGGCCTGATGGGGATCATACAGTGTAATTATCACCTTCTTTGCCTAAGACCTAAAATATGACTTTGGAAGCTCCTGATGTCAGTCCCTTGTTCCCATTAATTTGCCTTTTGTTAAGCATCAAGTTTTTCTGTTGTAGATTATTCCCTGCTTTTCAGTCATTTGATATCAAACTCCTGTATATCATCCTTGTAAACTACTAGTTAGCCCCAATGTTTGCTGTAGGTGTTTTCAGATTGTGAATGAAATGAATCCATTGCTGCTAGTTTGAATGTGAACTTATACCAATCATGATGGTTTAATTGATTACAC</gDNA_template>
            <first_frame> M  K  R  *  L  L  F  L  S  S  I  R  S  E  P  *  T  S  P  M  A  G  A  G  D  D  S  H  L  Q  N  D  V  V  S  V  H  C  I  N  D  S  L  G  D  D  E  L  R  A  V  L  S  R  L  G  D  D  K  D  K  E  V  F  G  L  V  C  K  R  W  L  R  I  Q  S  T  E  R  K  K  L  C  A  R  A  G  P  H  M  L  R  R  I  A  S  R  F  T  R  L  H  E  L  D  L  S  Q  S  V  S  R  S  F  Y  P  G  V  T  D  S  D  L  S  V  I  A  T  A  F  S  C  L  R  I  L  N  L  Q  N  C  K   : G  I  T  D  K  G  L  A  A  I  G  S  S  L  S  S  L  Q  S  L  D  V  S  Y  C  R  K  I  T  D  K  G  L  S  A  V  A  E  G  C  H  D  L  R  I  L  H  L  S  G  C  R  F  V  S  D  S  L  M  K  A  L  S  E  N  C  H  N  V  E  E  I  G  L  Q  G  C  T  N  I  T  N  S  G  L  S  V  M  V  E  G  C  R  R  I  K  H  L  D  I  N  K  C  I  N  I  G  D  I  G  I  S  S  V  S  E  A  C  S  L  T  L  M  T  L  K  L  L  D  C  Y  K  V  G  D  D  S  I  L  S  L  A  N  H  C  K  N  L  E  T  L  V  I  G  G  C  R  N  I  S  D  E  S  M  K  S  L  A  A  S  C  S  N  S  L  R  K  L  R  M  D  W  C  L  N  I  T  D  S  S  L  D  C  I  L  S  K  C  R  E  L  E  V  L  D  I  G  C  C  E  E  L  T  D  A  A  F  Q  Q  L  G  S  D  N  F  M  L  G  M  K  I  L  K  V  S  N  C  P  K  I  T  V  E  G  I  K  K  L  M  K  S  C  K  F  L  E  Y  L  D  V  R  S  C  P  L  I  T  K  A  G  C  E  E  A  G  I  Q  F  P  E  S  C  K  I  N  F  T  G  S  L  A  E  P  D  V  L  L  *  A  V  L  V  L  A  M  S  L  K  A  *  W  G  S  Y  S  V  I  I  T  F  F  A  *  D  L  K  Y  D  F  G  S  S  *  C  Q  S  L  V  P  I  N  L  P  F  V  K  H  Q  V  F  L  L  *  I  I  P  C  F  S  V  I  *  Y  Q  T  P  V  Y  H  P  C  K  L  L  V  S  P  N  V  C  C  R  C  F  Q  I  V  N  E  M  N  P  L  L  L  V  *  M  *  T  Y  T  N  H  D  G  L  I  D  Y   </first_frame>
            <second_frame>  *  K  D  N  F  S  F  F  P  V  *  D  Q  N  H  K  L  L  R  W  P  A  P  A  T  I  L  I  C  R  T  T  S  F  Q  S  T  V  *  T  T  V  S  A  T  M  S  F  G  P  Y  C  R  D  L  E  T  T  K  T  R  K  F  S  G  W  Y  V  S  G  G  F  V  F  K  V  L  K  G  R  S  F  V  L  G  P  G  L  T  C  S  E  E  S  R  P  D  S  L  D  Y  M  S  L  I  Y  L  N  R  F  L  D  L  S  I  L  V  L  L  I  L  I  F  Q  L  L  L  L  L  S  L  A  C  E  F  S  I  C  R  T  V  K  :  A  *  Q  T  K  D  W  L  L  L  D  Q  V  C  L  L  Y  S  P  *  M  Y  P  T  A  E  R  S  L  T  R  G  F  Q  L  L  L  R  G  V  M  T  *  E  Y  C  I  F  L  A  V  D  L  S  Q  I  H  *  *  K  L  S  P  R  I  A  I  M  W  K  R  *  V  C  K  D  A  P  T  L  P  T  Q  V  S  L  L  W  L  K  V  A  G  G  *  S  I  W  T  L  T  N  A  S  I  L  V  I  L  G  Y  L  V  C  L  K  L  V  H  *  H  S  *  H  *  S  C  W  I  A  I  K  L  V  M  T  L  S  Y  P  W  P  T  T  A  K  I  L  R  H  S  L  L  V  V  A  V  T  Y  Q  M  S  P  *  S  H  W  Q  L  L  V  V  I  V  *  G  N  *  G  W  I  G  A  *  I  L  Q  T  L  H  W  T  A  S  F  P  N  A  E  S  L  R  F  S  T  L  A  A  V  R  S  *  L  M  L  H  F  N  N  *  E  V  T  T  L  C  W  G  *  R  F  *  R  S  V  T  V  Q  R  S  L  L  K  E  L  R  S  L  *  S  H  A  N  F  L  N  I  *  T  Y  D  L  V  P  L  S  L  K  Q  G  V  R  R  L  E  F  S  F  L  N  P  A  K  *  T  S  L  E  A  *  Q  S  Q  M  C  Y  F  E  Q  Y  L  F  *  Q  C  L  *  R  P  D  G  D  H  T  V  *  L  S  P  S  L  P  K  T  *  N  M  T  L  E  A  P  D  V  S  P  L  F  P  L  I  C  L  L  L  S  I  K  F  F  C  C  R  L  F  P  A  F  Q  S  F  D  I  K  L  L  Y  I  I  L  V  N  Y  *  L  A  P  M  F  A  V  G  V  F  R  L  *  M  K  *  I  H  C  C  *  F  E  C  E  L  I  P  I  M  M  V  *  L  I  T  </second_frame>
            <third_frame>   E  K  I  T  S  L  S  F  Q  Y  K  I  R  T  I  N  F  S  D  G  R  R  R  R  R  F  S  S  A  E  R  R  R  F  S  P  L  Y  K  R  Q  S  R  R  R  *  A  S  G  R  T  V  E  T  W  R  R  Q  R  Q  G  S  F  R  A  G  M  *  A  V  A  S  Y  S  K  Y  *  K  E  E  A  L  C  S  G  R  A  S  H  A  Q  K  N  R  V  P  I  H  S  I  T  *  A  *  S  I  S  I  G  F  *  I  F  L  S  W  C  Y  *  F  *  S  F  S  Y  C  Y  C  F  L  L  L  A  N  S  Q  S  A  E  L  *  R :   H  N  R  Q  R  I  G  C  Y  W  I  K  S  V  F  F  T  V  L  R  C  I  L  L  Q  K  D  H  *  Q  G  A  F  S  C  C  *  G  V  S  *  L  E  N  I  A  S  F  W  L  *  I  C  L  R  F  I  N  E  S  S  L  R  E  L  P  *  C  G  R  D  R  F  A  R  M  H  Q  H  Y  Q  L  R  S  L  C  Y  G  *  R  L  P  E  D  K  A  F  G  H  *  Q  M  H  Q  Y  W  *  Y  W  D  I  *  C  V  *  S  L  F  I  D  T  H  D  I  E  V  V  G  L  L  *  S  W  *  *  L  Y  L  I  L  G  Q  P  L  Q  K  S  *  D  T  R  Y  W  W  L  P  *  H  I  R  *  V  H  E  V  T  G  S  F  L  *  *  *  S  E  E  T  E  D  G  L  V  L  E  Y  Y  R  L  F  I  G  L  H  P  F  Q  M  Q  R  A  *  G  S  R  H  W  L  L  *  G  V  N  *  C  C  I  S  T  I  R  K  *  Q  L  Y  V  G  D  E  D  F  E  G  Q  *  L  S  K  D  H  C  *  R  N  *  E  A  Y  E  V  M  Q  I  S  *  I  S  R  R  T  I  L  S  P  Y  H  *  S  R  V  *  G  G  W  N  S  V  S  *  I  L  Q  N  K  L  H  W  K  L  S  R  A  R  C  V  T  L  S  S  T  C  F  S  N  V  F  E  G  L  M  G  I  I  Q  C  N  Y  H  L  L  C  L  R  P  K  I  *  L  W  K  L  L  M  S  V  P  C  S  H  *  F  A  F  C  *  A  S  S  F  S  V  V  D  Y  S  L  L  F  S  H  L  I  S  N  S  C  I  S  S  L  *  T  T  S  *  P  Q  C  L  L  *  V  F  S  D  C  E  *  N  E  S  I  A  A  S  L  N  V  N  L  Y  Q  S  *  W  F  N  *  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0203K06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42192" stop="41814"/>
                    <exon start="41109" stop="40217"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPMAGAGDDSHLQNDVVSVHCINDSLGDDELRAVLSRLGDDKDKEVFGLVCKRWLRIQSTERKKLCARAGPHMLRRIASRFTRLHELDLSQSVSRSFYPGVTDSDLSVIATAFSCLRILNLQNCKGITDKGLAAIGSSLSSLQSLDVSYCRKITDKGLSAVAEGCHDLRILHLSGCRFVSDSLMKALSENCHNVEEIGLQGCTNITNSGLSVMVEGCRRIKHLDINKCINIGDIGISSVSEACSLTLMTLKLLDCYKVGDDSILSLANHCKNLETLVIGGCRNISDESMKSLAASCSNSLRKLRMDWCLNITDSSLDCILSKCRELEVLDIGCCEELTDAAFQQLGSDNFMLGMKILKVSNCPKITVEGIKKLMKSCKFLEYLDVRSCPLITKAGCEEAGIQFPESCKINFTGSLAEPDVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46006" PGL_stop="46575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46006" e_stop="46575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46006" e_stop="46575" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46006" stop="46493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46007" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46007" stop="46552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46074" stop="46575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAATGTGAATTTAGCAGAAAGGTACCGCTTAAAAAATCATACTCATACTTAAACACTGAAGGACATTCAGAAATGGTTGCACTAACAAATTATCGGGAATGAATTACAAAATTTGAACCCCTTCTAACTTTGGACTGCCAAAGTCAATACCCAATATCTTTAAGTCTTGAGAAGTAACACAGGAAAAACTAGCTACCTCATAGGATTCCAAATGAATATATGTTGTATCAACTATTACTCTGCAGGGAATAACACTCTTGTCAATCAAAACTGAACAATTCTCATAAAGACCTTCCTTAGGTGCAAGATTCAACAAACAAGACTTTGGAGCAGACAGCCTATTTCTCTCACTAGTAAACCTTTCTTGGTCTTCCATCATTAAAATAAGACGATGGTTCCGACCTAATAGCTCTGACACATATTTCATGTCTCCCTTGTGAAGGGCATACCTAACACGAGTAGATGATACTTGCCCTCTCTCTTTACCGTCTTTAGAGTTCAAGTCTCCAGAAATTTGATTTGTGTCCATGACAGAATTGATTATATAAGCCTCTAATCCATACTCC</gDNA_template>
            <first_frame> K  R  M  *  I  *  Q  K  G  T  A  *  K  I  I  L  I  L  K  H  *  R  T  F  R  N  G  C  T  N  K  L  S  G  M  N  Y  K  I  *  T  P  S  N  F  G  L  P  K  S  I  P  N  I  F  K  S  *  E  V  T  Q  E  K  L  A  T  S  *  D  S  K  *  I  Y  V  V  S  T  I  T  L  Q  G  I  T  L  L  S  I  K  T  E  Q  F  S  *  R  P  S  L  G  A  R  F  N  K  Q  D  F  G  A  D  S  L  F  L  S  L  V  N  L  S  W  S  S  I  I  K  I  R  R  W  F  R  P  N  S  S  D  T  Y  F  M  S  P  L  *  R  A  Y  L  T  R  V  D  D  T  C  P  L  S  L  P  S  L  E  F  K  S  P  E  I  *  F  V  S  M  T  E  L  I  I  *  A  S  N  P  Y  S </first_frame>
            <second_frame>  K  E  C  E  F  S  R  K  V  P  L  K  K  S  Y  S  Y  L  N  T  E  G  H  S  E  M  V  A  L  T  N  Y  R  E  *  I  T  K  F  E  P  L  L  T  L  D  C  Q  S  Q  Y  P  I  S  L  S  L  E  K  *  H  R  K  N  *  L  P  H  R  I  P  N  E  Y  M  L  Y  Q  L  L  L  C  R  E  *  H  S  C  Q  S  K  L  N  N  S  H  K  D  L  P  *  V  Q  D  S  T  N  K  T  L  E  Q  T  A  Y  F  S  H  *  *  T  F  L  G  L  P  S  L  K  *  D  D  G  S  D  L  I  A  L  T  H  I  S  C  L  P  C  E  G  H  T  *  H  E  *  M  I  L  A  L  S  L  Y  R  L  *  S  S  S  L  Q  K  F  D  L  C  P  *  Q  N  *  L  Y  K  P  L  I  H  T   </second_frame>
            <third_frame>   K  N  V  N  L  A  E  R  Y  R  L  K  N  H  T  H  T  *  T  L  K  D  I  Q  K  W  L  H  *  Q  I  I  G  N  E  L  Q  N  L  N  P  F  *  L  W  T  A  K  V  N  T  Q  Y  L  *  V  L  R  S  N  T  G  K  T  S  Y  L  I  G  F  Q  M  N  I  C  C  I  N  Y  Y  S  A  G  N  N  T  L  V  N  Q  N  *  T  I  L  I  K  T  F  L  R  C  K  I  Q  Q  T  R  L  W  S  R  Q  P  I  S  L  T  S  K  P  F  L  V  F  H  H  *  N  K  T  M  V  P  T  *  *  L  *  H  I  F  H  V  S  L  V  K  G  I  P  N  T  S  R  *  Y  L  P  S  L  F  T  V  F  R  V  Q  V  S  R  N  L  I  C  V  H  D  R  I  D  Y  I  S  L  *  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0203K06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 57 chains have been computed
$ 
$ memory statistics:
$ 56376 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 1944 bytes was the average size of a spliced alignment
$ 10608 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2121 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 72 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 08:31:18
-->
