<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:23:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="-" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="1963" stop="706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1663" g_stop="1006" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="-" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1663" e_stop="1006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTCACTTATCTTAGCGGGTTATCTGATCGGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTATAGGGTCTATAATGACGAGTGATCAGCATGAACTTTTCACTAAATTCTTAAAGCTGAAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAACTGCTACATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACCTGGGCATCATTCTCCAACTTATTTATGGAGAAATATATACCCTGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAAAGCAAGGAAGGATGTCTGTTGCTGTTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGAGAATTCGCCGCTTTGTGAAAGTATTGAGGTCAGATTTGCAGATCCCAACCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTG--AAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737213" ref_strand="+" ref_description="SGN-E737213 [LC08DE06]">
      <seq>cattgatcttatggttggctcgcactgcaggagcagtggaggcgtggcttttcatgtcgaccatccatggttcatgcaggttgtgggggagtattggcttcctgtcattcgcttgatattgctggtgtggagcttattgatccactttcagctgatgttcaggcatcatttaccctcactctgctgcagaatgatataaaagcagctctgaaatctgctttcagtacaatggaaggtcctttatctgttgttgattggtgcaaaggtcgcagtcaatcaaatgatgggggaatatctggtgatggtttttctgcagagtccactgcaagtgcaagtgaatgtcgagattcttcgagtaccatatcattgtctgttggagaacctataagtccatctcagtcctctgctggtggatcatctagtttgagggatggaattagggtggatgaggcaagtgagcgcagattaagccaagacacttgtctatcagagtcggagcagcttccaggatcaaggcttagggcaacattggctgcagtaccgtatcctgctatacttgttggatatcaagacgattggcttaagacgtcacctagttctcttcagttctgggagaaggcaccttttgagccttatgcgatgccccaagcatatgacatatcacgttgtctgcccagacatcaatgctctaacaacagctgcaactgattttttcccacagcttggaactggttagtattcttaactatcatactaaccagaagatagtgtatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="18944" stop="22117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19243" g_stop="19398" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19399" i_stop="20020" i_length="622">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20021" g_stop="20294" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="430" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20295" i_stop="20365" i_length="71">
            <donor d_prob="0.191" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20366" g_stop="20498" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="563" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20499" i_stop="21520" i_length="1022">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21521" g_stop="21608" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="652" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21609" i_stop="21693" i_length="85">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21694" g_stop="21817" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="776" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E737213" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19243" e_stop="19398"/>
          <exon e_start="20021" e_stop="20294"/>
          <exon e_start="20366" e_stop="20498"/>
          <exon e_start="21521" e_stop="21608"/>
          <exon e_start="21694" e_stop="21817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATCTTATGGTTGGCTCGCACTGCAGGAGCAGTGGAGGCGTGGCTTTTCATGTCGACCATCCATGGTTCATGCAGGTTGTGGGGGAGTATTGGCTTCCTGTCATTCGCTTGATATTGCTGGTGTGGAGCTTATTGATCCACTTTCAGCTGATGTAAGTTTCTTATTTAGTAGAAACATTTTCTTAGCCTGCTTTATCTACTTCCCTAGGCTAAAGTGGCTTATTTGTACTTGTGCTGTGAAGTCTTGTGAGAATGCAACAATATCACGGATGACTTGTTACTCATCATTGTGATATGGGGTGTGCTCTCTGATAATCTTGAGGAAAAGAACAGTTAAATGAGATTGTCATAAATCTCCTTGAGTGTAGCTGCATAGGAGATGAATGAATTGCAGTCTGTCTATCCGTGTATTGTTATCTCAGTGCTTTTCTCTAGATGAGGGTGATTACTTTTCATCAATGACATATAGTGTAGAAATTTGTTATTTTCCTTAATAATTCTATTTCTCAACATATAGTGTTCCTTTTTATTAAATTTAGGTGTCACATTTGTTAGCATCTTAGTCAAAGGATATTTCTTCCTCAATTGTGATTTTGTTTCTTCTTCACATCGATTAGCATGTGACTGCTCTAATTGTAGCTTCCTCGGGTAAACACCCGAAATAAATTGTAGTTTGAATGGTCAGAAGATGCATTTTAGATGTTGCTAAGTTTTGCACATTACATATCTTTGTCCTTTCACAATCATACTTAATATGGAGACCTCTTCGTTCAGGTTCAGGCATCATTTACCCTCACTCTGCTGCAGAATGATATAAAAGCAGCTCTGAAATCTGCTTTCAGTACAATGGAAGGTCCTTTATCTGTTGTTGATTGGTGCAAAGGTCGCAGTCAATCAAATGATGGGGGAATATCTGGTGATGGTTTTTCTGCAGAGTCCACTGCAAGTGCAAGTGAATGTCGAGATTCTTCGAGTACCATATCATTGTCTGTTGGAGAACCTATAAGTCCATCTCAGTCCTCTGCTGGTGGATCATCTAGTTTGAGGGGTATGGATTATCATGGTCATACTGTCACTGTCCACAATGTTTTTTTTGATAAAATCTTTTTTTGTTCTCAGATGGAATTAGGGTGGATGAGGCAAGTGAGCGCAGATTAAGCCAAGACACTTGTCTATCAGAGTCGGAGCAGCTTCCAGGATCAAGGCTTAGGGCAACATTGGCTGCAGTACCGTATCCTGCTATACTTGTTGGGTATGCTATTTTTTACTGAAGTTGGTTGATCCTTATCCAATCCTATCTTTGGATTAGTGAGCATTACAGGTTGTCTTTGCTCCATATTTCAAAGCAGTATATCTCTTTGTTTTTTATGCTAGTCTTATTTACCCCTGCTTTGCTATCAGCAGTCTCAATAAGAAAAGGCATGGCCTTTTTTGTTGTGAGATAACTTTTTATGCTGTGATATTTGAAGTTGTCTCATAGATGATTGCTTATTTACCACATACCTTGTTGTGCTGCAACTTTTTGGAGGGACTTTAATATCGAAATCCAGATCCTCTCTGGGATTACTTTCCCAAGAATGAATATTTTCCTTTTTGTCTTAGAATTTCTTAAATAACACCTTCCAGTTCTGTAGTTTCTCTTATCTGCTTTATGATTTTAGTTCATAATCACTTTTTCTTATATGCCTTTTAATATCACCTAGTGTCAGAACGACAGATAGAAATCTTCTAGTGTTTGTCTCAAGAATTTGCAATGACCAACTTGAGTATTACAAAATCCCTGAAATGTTTCACTATGTTCCACTATGAAGTCAGCTTCACAACAAGCAGGTTCAACTTGTGCACTGCATAAAATAACTATTTTGATGGAAACTCCTCTCGCTACTTTCTTGTATTTTGCTTTACAGTTTGTATTCACTATACAGTTTGGGACTGAGGCATTGTTGTTATTGTTGTATTTCATATTCACAATGGTGCGTGTGTGTGGTTGCAATATAGCTCTGCAATTGTCATCACTTACTAGTTCTAGAACTTTCTAATGGATTAATTTTAAGGCTTCAACCTTGATTACTCAATTAAATAAAAGCATGATGGAGCTGCATTTGGTTCTCCTTTTCACTTTTTAATGTGAAGGGCTCACTAATCAGTACAAAACAAGTGTAGAGGACATTCCAGACATTGTATTTGTGATACTAAATTTATTTGAACTACTTTTTCTGTTTCTGGCCTTAATTTGCTATTTGAAGGGAGAAATAATGTCTTTTGACATTGCAGATATCAAGACGATTGGCTTAAGACGTCACCTAGTTCTCTTCAGTTCTGGGAGAAGGCACCTTTTGAGCCTTATGCGATG-CCCAAGCATGTAAATTTTTTAATAACTTCAGGCTGTTCTCTTGCTTATCTCCTCAACTATTATATTGCCTTACCCATTTTCCCCAACATTTCAGATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGG</genome_strand>
        <mrna_strand>CATTGATCTTATGGTTGGCTCGCACTGCAGGAGCAGTGGAGGCGTGGCTTTTCATGTCGACCATCCATGGTTCATGCAGGTTGTGGGGGAGTATTGGCTTCCTGTCATTCGCTTGATATTGCTGGTGTGGAGCTTATTGATCCACTTTCAGCTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCATCATTTACCCTCACTCTGCTGCAGAATGATATAAAAGCAGCTCTGAAATCTGCTTTCAGTACAATGGAAGGTCCTTTATCTGTTGTTGATTGGTGCAAAGGTCGCAGTCAATCAAATGATGGGGGAATATCTGGTGATGGTTTTTCTGCAGAGTCCACTGCAAGTGCAAGTGAATGTCGAGATTCTTCGAGTACCATATCATTGTCTGTTGGAGAACCTATAAGTCCATCTCAGTCCTCTGCTGGTGGATCATCTAGTTTGAGGG.......................................................................ATGGAATTAGGGTGGATGAGGCAAGTGAGCGCAGATTAAGCCAAGACACTTGTCTATCAGAGTCGGAGCAGCTTCCAGGATCAAGGCTTAGGGCAACATTGGCTGCAGTACCGTATCCTGCTATACTTGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAAGACGATTGGCTTAAGACGTCACCTAGTTCTCTTCAGTTCTGGGAGAAGGCACCTTTTGAGCCTTATGCGATGCCCCAAGCAT.....................................................................................ATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCCACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAACCAGAAGATAGTGTATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358812" ref_strand="+" ref_description="SGN-E358812 [cLHT-24-L11]">
      <seq>cgatgcccaagcatatgacatatcacgttgtctggccagacatcaatgctctaacaacagctgcaactgattttttccaacagcttggaactgtttatgagacatgcaaactgggaactcattcgcctcaatttatgggaaatgagatggagatagattctggcaagaatgcatcttctggttttgttctgattgattgcccccagtcaatgaagatagacagcagtagtgcatctatgctgggatcaatcagtgattactttctgtccctttccaatggatgggatttagaaagctatttgaagtcgctctcaaaagttctcagaaatttaaaacttagttcatgcatgaccatgaatccgaaagaaggaagtactggtccatgtacggtggtatacgtggtttgccctttccctgagcctcttgcggttctacagacggtgattgaatcttctattgctgttggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="21391" stop="24265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21595" g_stop="21608" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21609" i_stop="21693" i_length="85">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21694" g_stop="21772" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="93" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21773" i_stop="22204" i_length="432">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22205" g_stop="22500" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="389" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22501" i_stop="23883" i_length="1383">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23884" g_stop="23965" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="471" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E358812" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21595" e_stop="21608"/>
          <exon e_start="21694" e_stop="21772"/>
          <exon e_start="22205" e_stop="22500"/>
          <exon e_start="23884" e_stop="23965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGCCCAAGCATGTAAATTTTTTAATAACTTCAGGCTGTTCTCTTGCTTATCTCCTCAACTATTATATTGCCTTACCCATTTTCCCCAACATTTCAGATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGGTTACGTTTATGTGACTCAAAATTATAGTAGATGCTTTGTGCTTTAAGAAGATAAATATTCGGTATCCTAAAAGTGTAAAGCTGCACTAATTTCACAAATTGGCCAGTTCTTATTTAATGTTGCTGTATTTTGTAACTCAATCTGCATGACTCTTTCATTTTGAAGATATGGACAAGATCAGAGATGGAAAAATGATATTGAATTAATTAGAAAAAAGTGATTAAATTATTGCTTCTCATACAAATCCAGCTTCGTAACTGTCCTTGACATAGATAATGATAGTGGTATGTTTGTGTCATGAAATTTTGTTACCTGATATTTTTTGAATGACTTATCCGCAGTCCAATAGACTTCCCCTTTTTTTTTTGATTGACTATTCTCTTTTAGTTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCGATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACGGTAAGTTGTGATCCTCTTTGTTTCTTTTTTATATCTTTTCTATTTTTCTTCCCTATCTTGCTTTTGTCCTCTTTCTCCCTCTTTTTTCTCATTAGCACTAAAACTGGAAGATGCATCTTTAAAGTGAACTTCGTTGAGTCCATCATTGATTGGTGGAGATAATTGGTTTTCGATGTTAGGGCAGTCTACCACTTTCTCTTGATAAGGGGGCATTTTTGTATACTTGACCTTCTTTTGGCAAAGCAAAATGGGAAGAGTAGATTAAGCCAAAAGAGTGATTCCGTATTAATTTTTTGGCACATGTACTTCATAAGTATTTTTTTGGCACATGCTTCATAAGTAATTTTACTTCTGGAAAAGAGAACGCAAAAGGAAAAACTAGAAACTACAGTCAAAGTAGAACCTTTCCCACTGCCTTAGGTGCCTCCACTACATATCCATTTGTTTTAATATGATTGGGCTTAATTATAGTGCTTATGATGCCAAACCTTGGGATCCGGAAGTGTTAAGTTGATAGTGAAAGAATGACTTGCACGATGTCCTAGTGTCTTGGTGTGCTATGATAGTTACTCCAAGGTGTATTTTCTTTTGCACTGGTCGAGTAGGTCACATTTACCTGAGGCTAGTGAAACACTTACTAGTTGGATGAGCAAATAGAATAAGGGATATTTATATATGTTTCGTCCTAGATAGGGATTAATATTATATAGAAAGATACATCTGTTAAAAGGGATTAGTCAACTTCCAAAATGATAAAAATCTAAGGTAGAGCAGCAGCAGAAGTCATTGGATTCAATAGACACACCAATAATCAGAAGTTTTCTATATATATGAATTTATTCAATGTTTGAGAAGCTTAAGTAATACACACATTTTTTTTTGGGAAAAGAGAATGAGGCAACTCTGGCTAATGGTAAATGGCTCTTCTACTTCTGGTTGCATTTCTGAAGCAACACTTGCTGATAGTTTTCTTTTTTCTTAGTTTAGGATATCCACTTATTTCATTATTTTTGTCTTTGAATATACTGATATGAATATCTTTATTATATTCCTATCAACTTTTATGCGGTATCAGTACAATATAATGGCCTTGAATGAGAATTCGACATGCTATTCTGTTGGGACTTGGGTCCAATTGGGGTGGAAAGAGATAACTGGAATTCATATAGCCGACCTTACTAGTTCAGGATTGAGGGCAGTTGTTCTAAGGTTATTTTCTGTGCTCCAAGTGTTGCATATTCCATAGTTGCAAATCCTTCGAATATCATATTCTCAAAGTAAAAATCTTAGAAGAACGTAGAATATCTGATCTAAGCAGAGTATTATATGTTAAGGTAGTTAAGAGAAGCTTATATCTGATTGTATATTTGAATGTCAAATCAGGTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCTG</genome_strand>
        <mrna_strand>CGATGCCCAAGCAT.....................................................................................ATGACATATCACGTTGTCTGGCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCAATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358967" ref_strand="+" ref_description="SGN-E358967 [cLHT-24-N3]">
      <seq>catatgacatatcacgttgtctgcggagacatcaatgctctaacaacagctgcaactgatttttttcaacagcttggaactgtttatgagacatgcaaactgggaactcattcacctcaatttatgggaaatgagatggaaatagattctggcaaaaatgcatattctggatttgtactgattgattgcccccagccaatgaagataaacaccaggtgtgcatttatgctgggatcaatcagggattactttgtgcccctttccaatggatgggatttagaaagctattagaagtcggtctcaaaagttatcacaagtttaaaacttagttcatgcatgaccatgaatccgatagaaggaagtactggtccatgtacggaggtatacgtggtttgccctttccctgagcctcttgcggttctacagacggagattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="21391" stop="24244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21606" g_stop="21608" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21609" i_stop="21693" i_length="85">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21694" g_stop="21772" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="82" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21773" i_stop="22204" i_length="432">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22205" g_stop="22500" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="378" r_length="296" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22501" i_stop="23883" i_length="1383">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23884" g_stop="23944" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="439" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E358967" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21606" e_stop="21608"/>
          <exon e_start="21694" e_stop="21772"/>
          <exon e_start="22205" e_stop="22500"/>
          <exon e_start="23884" e_stop="23944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTAAATTTTTTAATAACTTCAGGCTGTTCTCTTGCTTATCTCCTCAACTATTATATTGCCTTACCCATTTTCCCCAACATTTCAGATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGGTTACGTTTATGTGACTCAAAATTATAGTAGATGCTTTGTGCTTTAAGAAGATAAATATTCGGTATCCTAAAAGTGTAAAGCTGCACTAATTTCACAAATTGGCCAGTTCTTATTTAATGTTGCTGTATTTTGTAACTCAATCTGCATGACTCTTTCATTTTGAAGATATGGACAAGATCAGAGATGGAAAAATGATATTGAATTAATTAGAAAAAAGTGATTAAATTATTGCTTCTCATACAAATCCAGCTTCGTAACTGTCCTTGACATAGATAATGATAGTGGTATGTTTGTGTCATGAAATTTTGTTACCTGATATTTTTTGAATGACTTATCCGCAGTCCAATAGACTTCCCCTTTTTTTTTTGATTGACTATTCTCTTTTAGTTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCGATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACGGTAAGTTGTGATCCTCTTTGTTTCTTTTTTATATCTTTTCTATTTTTCTTCCCTATCTTGCTTTTGTCCTCTTTCTCCCTCTTTTTTCTCATTAGCACTAAAACTGGAAGATGCATCTTTAAAGTGAACTTCGTTGAGTCCATCATTGATTGGTGGAGATAATTGGTTTTCGATGTTAGGGCAGTCTACCACTTTCTCTTGATAAGGGGGCATTTTTGTATACTTGACCTTCTTTTGGCAAAGCAAAATGGGAAGAGTAGATTAAGCCAAAAGAGTGATTCCGTATTAATTTTTTGGCACATGTACTTCATAAGTATTTTTTTGGCACATGCTTCATAAGTAATTTTACTTCTGGAAAAGAGAACGCAAAAGGAAAAACTAGAAACTACAGTCAAAGTAGAACCTTTCCCACTGCCTTAGGTGCCTCCACTACATATCCATTTGTTTTAATATGATTGGGCTTAATTATAGTGCTTATGATGCCAAACCTTGGGATCCGGAAGTGTTAAGTTGATAGTGAAAGAATGACTTGCACGATGTCCTAGTGTCTTGGTGTGCTATGATAGTTACTCCAAGGTGTATTTTCTTTTGCACTGGTCGAGTAGGTCACATTTACCTGAGGCTAGTGAAACACTTACTAGTTGGATGAGCAAATAGAATAAGGGATATTTATATATGTTTCGTCCTAGATAGGGATTAATATTATATAGAAAGATACATCTGTTAAAAGGGATTAGTCAACTTCCAAAATGATAAAAATCTAAGGTAGAGCAGCAGCAGAAGTCATTGGATTCAATAGACACACCAATAATCAGAAGTTTTCTATATATATGAATTTATTCAATGTTTGAGAAGCTTAAGTAATACACACATTTTTTTTTGGGAAAAGAGAATGAGGCAACTCTGGCTAATGGTAAATGGCTCTTCTACTTCTGGTTGCATTTCTGAAGCAACACTTGCTGATAGTTTTCTTTTTTCTTAGTTTAGGATATCCACTTATTTCATTATTTTTGTCTTTGAATATACTGATATGAATATCTTTATTATATTCCTATCAACTTTTATGCGGTATCAGTACAATATAATGGCCTTGAATGAGAATTCGACATGCTATTCTGTTGGGACTTGGGTCCAATTGGGGTGGAAAGAGATAACTGGAATTCATATAGCCGACCTTACTAGTTCAGGATTGAGGGCAGTTGTTCTAAGGTTATTTTCTGTGCTCCAAGTGTTGCATATTCCATAGTTGCAAATCCTTCGAATATCATATTCTCAAAGTAAAAATCTTAGAAGAACGTAGAATATCTGATCTAAGCAGAGTATTATATGTTAAGGTAGTTAAGAGAAGCTTATATCTGATTGTATATTTGAATGTCAAATCAGGTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAAT</genome_strand>
        <mrna_strand>CAT.....................................................................................ATGACATATCACGTTGTCTGCGGAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTTCAACAGCTTGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGACATGCAAACTGGGAACTCATTCACCTCAATTTATGGGAAATGAGATGGAAATAGATTCTGGCAAAAATGCATATTCTGGATTTGTACTGATTGATTGCCCCCAGCCAATGAAGATAAACACCAGGTGTGCATTTATGCTGGGATCAATCAGGGATTACTTTGTGCCCCTTTCCAATGGATGGGATTTAGAAAGCTATTAGAAGTCGGTCTCAAAAGTTATCACAAGTTTAAAACTTAGTTCATGCATGACCATGAATCCGATAGAAGGAAGTACTGGTCCATGTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGAGATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416690" ref_strand="+" ref_description="SGN-E416690 [STM-23-O20]">
      <seq>atgacattatcacgttgtctgcccagacatcaatgctctaacaacagctgcaactgattttttccaacagcttggaactgtttatgagacatgcaaactgggaactcattcgcctcaatgtgtgggaaatgaaatggagatagattccggcaagaatgcatcttctggttttgttctgattgattgcccccagtcaatgaagatagacagcagtagtgcatctatgctgggatcaatcagtgattactttctgtccctttccaatggatgggatttagaaagctatttgaagtctctctcaaaagttctcagaaatttaaagcttagttcatgcatgaccatgaatccaaaagaaggaagtactggtccatgtacggtggtatacgtggtttgccctttccctgagcctcttgcggttctacagacggtgattgaatcttctattgctgttggatcagtggttctttcttcagataaagagaggcgatctacgctgcacaatcaagtcgggaaggccttaagttactcagcagctgtggatgaggccttctcaaatgttttaacactttctgggttttgtatccctaagctggtattgcagattgtcactgttgatgcaatttttaagggtacaagccctgctctgagcgagcttgtcatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="21394" stop="24471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21694" g_stop="21772" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21773" i_stop="22204" i_length="432">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22205" g_stop="22500" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="376" r_length="296" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22501" i_stop="23883" i_length="1383">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23884" g_stop="24171" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="664" r_length="288" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E416690" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21694" e_stop="21772"/>
          <exon e_start="22205" e_stop="22500"/>
          <exon e_start="23884" e_stop="24171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACA-TATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGGTTACGTTTATGTGACTCAAAATTATAGTAGATGCTTTGTGCTTTAAGAAGATAAATATTCGGTATCCTAAAAGTGTAAAGCTGCACTAATTTCACAAATTGGCCAGTTCTTATTTAATGTTGCTGTATTTTGTAACTCAATCTGCATGACTCTTTCATTTTGAAGATATGGACAAGATCAGAGATGGAAAAATGATATTGAATTAATTAGAAAAAAGTGATTAAATTATTGCTTCTCATACAAATCCAGCTTCGTAACTGTCCTTGACATAGATAATGATAGTGGTATGTTTGTGTCATGAAATTTTGTTACCTGATATTTTTTGAATGACTTATCCGCAGTCCAATAGACTTCCCCTTTTTTTTTTGATTGACTATTCTCTTTTAGTTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCGATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACGGTAAGTTGTGATCCTCTTTGTTTCTTTTTTATATCTTTTCTATTTTTCTTCCCTATCTTGCTTTTGTCCTCTTTCTCCCTCTTTTTTCTCATTAGCACTAAAACTGGAAGATGCATCTTTAAAGTGAACTTCGTTGAGTCCATCATTGATTGGTGGAGATAATTGGTTTTCGATGTTAGGGCAGTCTACCACTTTCTCTTGATAAGGGGGCATTTTTGTATACTTGACCTTCTTTTGGCAAAGCAAAATGGGAAGAGTAGATTAAGCCAAAAGAGTGATTCCGTATTAATTTTTTGGCACATGTACTTCATAAGTATTTTTTTGGCACATGCTTCATAAGTAATTTTACTTCTGGAAAAGAGAACGCAAAAGGAAAAACTAGAAACTACAGTCAAAGTAGAACCTTTCCCACTGCCTTAGGTGCCTCCACTACATATCCATTTGTTTTAATATGATTGGGCTTAATTATAGTGCTTATGATGCCAAACCTTGGGATCCGGAAGTGTTAAGTTGATAGTGAAAGAATGACTTGCACGATGTCCTAGTGTCTTGGTGTGCTATGATAGTTACTCCAAGGTGTATTTTCTTTTGCACTGGTCGAGTAGGTCACATTTACCTGAGGCTAGTGAAACACTTACTAGTTGGATGAGCAAATAGAATAAGGGATATTTATATATGTTTCGTCCTAGATAGGGATTAATATTATATAGAAAGATACATCTGTTAAAAGGGATTAGTCAACTTCCAAAATGATAAAAATCTAAGGTAGAGCAGCAGCAGAAGTCATTGGATTCAATAGACACACCAATAATCAGAAGTTTTCTATATATATGAATTTATTCAATGTTTGAGAAGCTTAAGTAATACACACATTTTTTTTTGGGAAAAGAGAATGAGGCAACTCTGGCTAATGGTAAATGGCTCTTCTACTTCTGGTTGCATTTCTGAAGCAACACTTGCTGATAGTTTTCTTTTTTCTTAGTTTAGGATATCCACTTATTTCATTATTTTTGTCTTTGAATATACTGATATGAATATCTTTATTATATTCCTATCAACTTTTATGCGGTATCAGTACAATATAATGGCCTTGAATGAGAATTCGACATGCTATTCTGTTGGGACTTGGGTCCAATTGGGGTGGAAAGAGATAACTGGAATTCATATAGCCGACCTTACTAGTTCAGGATTGAGGGCAGTTGTTCTAAGGTTATTTTCTGTGCTCCAAGTGTTGCATATTCCATAGTTGCAAATCCTTCGAATATCATATTCTCAAAGTAAAAATCTTAGAAGAACGTAGAATATCTGATCTAAGCAGAGTATTATATGTTAAGGTAGTTAAGAGAAGCTTATATCTGATTGTATATTTGAATGTCAAATCAGGTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCTGGGGTTCTTTCTTCAGATAAAGAGAGGCGGTCTACGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCACTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAACTGGTATTGCAGATTGTCACCGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTG</genome_strand>
        <mrna_strand>ATGACATTATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATGTGTGGGAAATGAAATGGAGATAGATTCCGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCAATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCTCTCTCAAAAGTTCTCAGAAATTTAAAGCTTAGTTCATGCATGACCATGAATCCAAAAGAAGGAAGTACTGGTCCATGTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCAGTGGTTCTTTCTTCAGATAAAGAGAGGCGATCTACGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCCTTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAGCTGGTATTGCAGATTGTCACTGTTGATGCAATTTTTAAGGGTACAAGCCCTGCTCTGAGCGAGCTTGTCATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439241" ref_strand="+" ref_description="SGN-E439241 [cSTA-11-M18]">
      <seq>atgacatatcacgttgtctgcccagacatcaatgctctaacaacagctgcaactgattttttccaacagcttggaactgtttatgagacatgcaaactgggaactcattcgcctcaatgtgtgggaaatgaaatggagatagattccggcaagaatgcatcttctggttttgttctgattgattgcccccagtcaatgaagatagacagcagtagtgcatctatgctgggatcaatcagtgattactttctgtccctttccaatggatgggatttagaaagctatttgaagtctctctcaaaagttctcagaaatttaaagcttagttcatgcatgaccatgaatccaaaagaaggaagtactggtccatgtacggtggtatacgtggtttgccctttccctgagcctcttgcggttctacagacggtgattgaatcttctattgctgttggatcagtggttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="21394" stop="24274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21694" g_stop="21772" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21773" i_stop="22204" i_length="432">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22205" g_stop="22500" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="375" r_length="296" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22501" i_stop="23883" i_length="1383">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23884" g_stop="23974" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="466" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E439241" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21694" e_stop="21772"/>
          <exon e_start="22205" e_stop="22500"/>
          <exon e_start="23884" e_stop="23974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGGTTACGTTTATGTGACTCAAAATTATAGTAGATGCTTTGTGCTTTAAGAAGATAAATATTCGGTATCCTAAAAGTGTAAAGCTGCACTAATTTCACAAATTGGCCAGTTCTTATTTAATGTTGCTGTATTTTGTAACTCAATCTGCATGACTCTTTCATTTTGAAGATATGGACAAGATCAGAGATGGAAAAATGATATTGAATTAATTAGAAAAAAGTGATTAAATTATTGCTTCTCATACAAATCCAGCTTCGTAACTGTCCTTGACATAGATAATGATAGTGGTATGTTTGTGTCATGAAATTTTGTTACCTGATATTTTTTGAATGACTTATCCGCAGTCCAATAGACTTCCCCTTTTTTTTTTGATTGACTATTCTCTTTTAGTTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCGATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACGGTAAGTTGTGATCCTCTTTGTTTCTTTTTTATATCTTTTCTATTTTTCTTCCCTATCTTGCTTTTGTCCTCTTTCTCCCTCTTTTTTCTCATTAGCACTAAAACTGGAAGATGCATCTTTAAAGTGAACTTCGTTGAGTCCATCATTGATTGGTGGAGATAATTGGTTTTCGATGTTAGGGCAGTCTACCACTTTCTCTTGATAAGGGGGCATTTTTGTATACTTGACCTTCTTTTGGCAAAGCAAAATGGGAAGAGTAGATTAAGCCAAAAGAGTGATTCCGTATTAATTTTTTGGCACATGTACTTCATAAGTATTTTTTTGGCACATGCTTCATAAGTAATTTTACTTCTGGAAAAGAGAACGCAAAAGGAAAAACTAGAAACTACAGTCAAAGTAGAACCTTTCCCACTGCCTTAGGTGCCTCCACTACATATCCATTTGTTTTAATATGATTGGGCTTAATTATAGTGCTTATGATGCCAAACCTTGGGATCCGGAAGTGTTAAGTTGATAGTGAAAGAATGACTTGCACGATGTCCTAGTGTCTTGGTGTGCTATGATAGTTACTCCAAGGTGTATTTTCTTTTGCACTGGTCGAGTAGGTCACATTTACCTGAGGCTAGTGAAACACTTACTAGTTGGATGAGCAAATAGAATAAGGGATATTTATATATGTTTCGTCCTAGATAGGGATTAATATTATATAGAAAGATACATCTGTTAAAAGGGATTAGTCAACTTCCAAAATGATAAAAATCTAAGGTAGAGCAGCAGCAGAAGTCATTGGATTCAATAGACACACCAATAATCAGAAGTTTTCTATATATATGAATTTATTCAATGTTTGAGAAGCTTAAGTAATACACACATTTTTTTTTGGGAAAAGAGAATGAGGCAACTCTGGCTAATGGTAAATGGCTCTTCTACTTCTGGTTGCATTTCTGAAGCAACACTTGCTGATAGTTTTCTTTTTTCTTAGTTTAGGATATCCACTTATTTCATTATTTTTGTCTTTGAATATACTGATATGAATATCTTTATTATATTCCTATCAACTTTTATGCGGTATCAGTACAATATAATGGCCTTGAATGAGAATTCGACATGCTATTCTGTTGGGACTTGGGTCCAATTGGGGTGGAAAGAGATAACTGGAATTCATATAGCCGACCTTACTAGTTCAGGATTGAGGGCAGTTGTTCTAAGGTTATTTTCTGTGCTCCAAGTGTTGCATATTCCATAGTTGCAAATCCTTCGAATATCATATTCTCAAAGTAAAAATCTTAGAAGAACGTAGAATATCTGATCTAAGCAGAGTATTATATGTTAAGGTAGTTAAGAGAAGCTTATATCTGATTGTATATTTGAATGTCAAATCAGGTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCTGGGGTTCTTT</genome_strand>
        <mrna_strand>ATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATGTGTGGGAAATGAAATGGAGATAGATTCCGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCAATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCTCTCTCAAAAGTTCTCAGAAATTTAAAGCTTAGTTCATGCATGACCATGAATCCAAAAGAAGGAAGTACTGGTCCATGTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCAGTGGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424697" ref_strand="+" ref_description="SGN-E424697 [STM-43-P20]">
      <seq>gataaagagaggcgatctatgctgcacaatcaagtcgggaaggccttaagttactcagcagctgtggatgaggccttctcaaatgttttaacactttctgggttttgtatccctaagctggtattgcagattgtcactgttgatgcaatttttagggttacaagccctgctctgagtgagcttgtcatactgaaggaaattgctttcacagtttataacaaagcccgtagaatatctcgagggacccccagtgacatggttcagtcgtcatccatgcccggcagatctcatccagtcttaatgcaaatgaattcccaagttccagggatgtggaaggactgtgttggtcctcgaggcataggaacttcccttcagagagaggctgaccttgatgcaagcctaaggcctggtagttgggacaactggcaagcatcaagagggggaggtctcggatgtgagccaaacagaatcggggattttttcttttcaagatgaaattcgttatttgtttgagcccctttacattcttgctgaaccangttcattggatcgtggactttcatttccgatgtcgggtaatctaatgactgaatcttctaagcttttgttggatgatggtacaagtggaagttttatgcagagttcagcttcttcaggtggtggagacactggactgaacacccagtctgaaacatctgtaccagatgggttttggatctgcacatcaaaaatcacttcccagcctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="23680" stop="25027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23980" g_stop="24727" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E424697" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23980" e_stop="24727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGAGAGGCGGTCTACGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCACTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAACTGGTATTGCAGATTGTCACCGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGCAGAATATCTCGAGGGTCCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGTAGATCTCATCCAGTTCTGATGCAAATGAACTCCCCAGTTCCAGGAATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAAGCTGACCTTGATGCAAACCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTTGGATGTGAGCCAAACAGGATCGGGGA-TTTTTCTTTTCAGGATGAAATTCGTTATTTGTTTGAGCCCCTTTACATTCTTGCTGAACCAGGTTCATTGGATCGTGGACTTTCATTTCCGATGTCGGGTAATCCAATGACTGAATCTTCAAAGCTTTTGTTGGATGATGGTACAAGTGGAAGTTTTATGCAGAGTTCAGCTTCTTCAGGTGGTGGAGACACTGGACTGAACACTCAGTCTGAAACATCTGTACCAGAT-GGTTTTGGATCTGCACATCAAAAATCACTTCCAAGCCTGCATT</genome_strand>
        <mrna_strand>GATAAAGAGAGGCGATCTATGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCCTTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAGCTGGTATTGCAGATTGTCACTGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGTAGAATATCTCGAGGGACCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGCAGATCTCATCCAGTCTTAATGCAAATGAATTCCCAAGTTCCAGGGATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAGGCTGACCTTGATGCAAGCCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTCGGATGTGAGCCAAACAGAATCGGGGATTTTTTCTTTTCAAGATGAAATTCGTTATTTGTTTGAGCCCCTTTACATTCTTGCTGAACCANGTTCATTGGATCGTGGACTTTCATTTCCGATGTCGGGTAATCTAATGACTGAATCTTCTAAGCTTTTGTTGGATGATGGTACAAGTGGAAGTTTTATGCAGAGTTCAGCTTCTTCAGGTGGTGGAGACACTGGACTGAACACCCAGTCTGAAACATCTGTACCAGATGGGTTTTGGATCTGCACATCAAAAATCACTTCCCAGCCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452987" ref_strand="+" ref_description="SGN-E452987 [cSTS-18-F3]">
      <seq>gataaagagaggcgatctatgctgcacaatcaagtcgggaaggccttaagttactcagcagctgtggatgaggccttctcaaatgttttaacactttctgggttttgtatccctaagctggtattgcagattgtcactgttgatgcaatttttagggttacaagccctgctctgagtgagcttgtcatactgaaggaaattgctttcacagtttataacaaagcccgtagaatatctcgagggacccccagtgacatggttcagtcgtcatccatgcccggcagatctcatccagtcttaatgcaaatgaattcccaagttccagggatgtggaaggactgtgttggtcctcgaggcataggaacttcccttcagagagaggctgaccttgatgcaagcctaaggcctggtagttgggacaactggcaagcatcaagagggggaggtctcggatgtgaagcccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="23680" stop="24744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23980" g_stop="24444" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E452987" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23980" e_stop="24444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGAGAGGCGGTCTACGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCACTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAACTGGTATTGCAGATTGTCACCGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGCAGAATATCTCGAGGGTCCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGTAGATCTCATCCAGTTCTGATGCAAATGAACTCCCCAGTTCCAGGAATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAAGCTGACCTTGATGCAAACCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTTGGATGTG-AG-CCAAAC</genome_strand>
        <mrna_strand>GATAAAGAGAGGCGATCTATGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCCTTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAGCTGGTATTGCAGATTGTCACTGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGTAGAATATCTCGAGGGACCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGCAGATCTCATCCAGTCTTAATGCAAATGAATTCCCAAGTTCCAGGGATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAGGCTGACCTTGATGCAAGCCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTCGGATGTGAAGCCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409442" ref_strand="+" ref_description="SGN-E409442 [PPI-14-G19]">
      <seq>tgtcactgttgatgcaatttttagggttacaagccctgctctgagcgagcttgtcatactgaaggaaattgctttcacagtttataacaaagcccgcagaatatctcgagggacccccagtgacatggttcagtcgtcatccatgcccggcagatctcatccagtcttaatgcaaatgaattcccaagttccagggatgtggaaggactgtgttggtcctcgaggcataggaacttcccttcagagagaggctgaccttgatgcaagcctaaggcctggtagttgggacaactggcaagcatcaagagggggaggtcttggatgtgagccaaacagaatcggggatttttcttttcaagatgaaattcgttatttgtttgagcccctttacattcttgctgaaccaggttcattggatcgtggactttcatttccgatgtcgggtaatctaatgactgaatcttcaaagcttttgttggatgatggtacaagtggaagttttatgcagagttcagcttcttcaggtggtggagacactggactgaacactcagtctgaaacatctgtaccagaatggttttggatctgcacatcaaaaatcacttccagccctgcattgnttgtatggttggactgaggattggcgctggatggcgtgtatatggacagattccaggggagaattgcttgatatcatatatatccatttgggggaataagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="23811" stop="25132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24111" g_stop="24832" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E409442" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24111" e_stop="24832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACCGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGCAGAATATCTCGAGGGTCCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGTAGATCTCATCCAGTTCTGATGCAAATGAACTCCCCAGTTCCAGGAATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAAGCTGACCTTGATGCAAACCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTTGGATGTGAGCCAAACAGGATCGGGGATTTTTCTTTTCAGGATGAAATTCGTTATTTGTTTGAGCCCCTTTACATTCTTGCTGAACCAGGTTCATTGGATCGTGGACTTTCATTTCCGATGTCGGGTAATCCAATGACTGAATCTTCAAAGCTTTTGTTGGATGATGGTACAAGTGGAAGTTTTATGCAGAGTTCAGCTTCTTCAGGTGGTGGAGACACTGGACTGAACACTCAGTCTGAAACATCTGTACCAG-ATGGTTTTGGATCTGCACATCAAAAATCACTTCCAAGCCTGCATTGTTGTTATGGTTGGACTGAAGATTGGCGCTGGCTGGTGTGTATATGGACAGATTCCAGGGGAGAATTGCTTGATAATCATATATATCCATTTGGGGGAATAAGTA</genome_strand>
        <mrna_strand>TGTCACTGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGCGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGCAGAATATCTCGAGGGACCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGCAGATCTCATCCAGTCTTAATGCAAATGAATTCCCAAGTTCCAGGGATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAGGCTGACCTTGATGCAAGCCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTTGGATGTGAGCCAAACAGAATCGGGGATTTTTCTTTTCAAGATGAAATTCGTTATTTGTTTGAGCCCCTTTACATTCTTGCTGAACCAGGTTCATTGGATCGTGGACTTTCATTTCCGATGTCGGGTAATCTAATGACTGAATCTTCAAAGCTTTTGTTGGATGATGGTACAAGTGGAAGTTTTATGCAGAGTTCAGCTTCTTCAGGTGGTGGAGACACTGGACTGAACACTCAGTCTGAAACATCTGTACCAGAATGGTTTTGGATCTGCACATCAAAAATCACTTCCAGCCCTGCATTGNTTGTATGGTTGGACTGAGGATTGGCGCTGGATGGCGTGTATATGGACAGATTCCAGGGGAGAATTGCTTGAT-ATCATATATATCCATTTGGGGGAATAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688270" ref_strand="+" ref_description="SGN-E688270 [t3_tus_11_j06]">
      <seq>cttgcctgactgctgaatcaccaccacttgcccatcttctccacagcaagggatgtgccattcccctttcaacaggttttgtggtttcaaaagctgtacctacaatgaggagagatgtaaggagtatctcaaaagaagaatggccctcagttctttctgtcagcctcgttgattactatggtggcagcaacgtcatccatgaaaagtttttgaagggtgttgataaggttgggggaaagggtacaggttcggaaacaagagatgttgaaatagcagctcacttgattcttgacaacatagctgcagagctccatgctttatcatggatgactgtaagtccggcatacttggagagaagatctgctttgcctttacattgtgacatggtattaaggcttcggagactgcttcactttgccgataaggaagtttctcggcaacctgtgaaaagccaagtttaggatacgtgtaaattgcagcatacacacaacttgttcaagccgtccatcttgtgtctttgtttcgttatagaaacagactgtaaacacaaaatgcatatactagttcgctggagaacatcctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="25917" stop="27103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26217" g_stop="26803" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E688270" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26217" e_stop="26803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGGTAAGGTTGGGGGAAGGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTGTAAGTCCGGCATACTTGGAGAGAAGATCTGCTTTGCCTTTACATTGTGACATGGTATTAAGGCTTCGGAGACTGCTTCACTTTGCCGATAAGGAAGTTTCTCGGCAACCTGTGAAAAGCCAAGTTTAGGATACGTGTAAATTGCAGCATACACACAACTTGTTCAAGCCGTCCATCTTGTGTCTTTGTTTCGTTATAGAAACAGACTGTAAACACAAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTG</genome_strand>
        <mrna_strand>CTTGCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGATAAGGTTGGGGGAAAGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGACAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTGTAAGTCCGGCATACTTGGAGAGAAGATCTGCTTTGCCTTTACATTGTGACATGGTATTAAGGCTTCGGAGACTGCTTCACTTTGCCGATAAGGAAGTTTCTCGGCAACCTGTGAAAAGCCAAGTTTAGGATACGTGTAAATTGCAGCATACACACAACTTGTTCAAGCCGTCCATCTTGTGTCTTTGTTTCGTTATAGAAACAGACTGTAAACACAAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550632" ref_strand="+" ref_description="SGN-E550632 [TUS-11-J6]">
      <seq>cttgcctgactgctgaatcaccaccacttgcccatcttctccacagcaagggatgtgccattcccctttcaacaggttttgtggtttcaaaagctgtacctacaatgaggagagatgtaaggagtatctcaaaagaagaatggccctcagttctttctgtcagcctcgttgattactatggtggcagcaacgtcatccatgaaaagtttttgaagggtgttgataaggttgggggaaagggtacaggttcggaaacaagagatgttgaaatagcagctcacttgattcttgagaacatagctgcagagctccatgctttatcatggatgactgtaagtccggcatacttggagagaagatctgctttgcctttacattgtgacatggtattaaggcttcggagactgcttcactttgccgataaggaagtttctcggcaacctgtgaaaagccaagtttaggatacgtgtaaattgcagcatacacacaacttgttcaagccgtccatcttgtgtctttgtttcgttatagaaacagactgtaaacacaaaatgcatatactagttcgctggagaacatcctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="25917" stop="27103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26217" g_stop="26803" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E550632" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26217" e_stop="26803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGGTAAGGTTGGGGGAAGGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTGTAAGTCCGGCATACTTGGAGAGAAGATCTGCTTTGCCTTTACATTGTGACATGGTATTAAGGCTTCGGAGACTGCTTCACTTTGCCGATAAGGAAGTTTCTCGGCAACCTGTGAAAAGCCAAGTTTAGGATACGTGTAAATTGCAGCATACACACAACTTGTTCAAGCCGTCCATCTTGTGTCTTTGTTTCGTTATAGAAACAGACTGTAAACACAAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTG</genome_strand>
        <mrna_strand>CTTGCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGATAAGGTTGGGGGAAAGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTGTAAGTCCGGCATACTTGGAGAGAAGATCTGCTTTGCCTTTACATTGTGACATGGTATTAAGGCTTCGGAGACTGCTTCACTTTGCCGATAAGGAAGTTTCTCGGCAACCTGTGAAAAGCCAAGTTTAGGATACGTGTAAATTGCAGCATACACACAACTTGTTCAAGCCGTCCATCTTGTGTCTTTGTTTCGTTATAGAAACAGACTGTAAACACAAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273429" ref_strand="+" ref_description="SGN-E273429 [cLEN-3-M24]">
      <seq>gcctgactgctgaatcaccaccacttgcccatcttctccacagcaagggatgtgccattcccctttcaacaggttttgtggtttcaaaagctgtacctacaatgaggagagatgtaaggagtatctcaaaagaagaatggccctcagttctttctgtcagcctcgttgattactatggtggcagcaacgtcatccatgaaaagtttttgaagggtgttggtaaagttgggggaaggggtacaggttctgaaacaagagatgttgaaatagcagctcacttgattcttgagaacatagctgcagagctccatgctttatcatggatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="25920" stop="26849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26220" g_stop="26549" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E273429" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26220" e_stop="26549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGGTAAGGTTGGGGGAAGGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTG</genome_strand>
        <mrna_strand>GCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGGTAAAGTTGGGGGAAGGGGTACAGGTTCTGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234433" ref_strand="+" ref_description="SGN-E234433 [cLEL-8-C15](-)">
      <seq>aaaatgcatatactagttcgctggagaacatcctttctgagaagtgttaccttgggataaattagtagttgtaggatagtagatttttattttgtacataatgtcatgtaaactattacagggatccaaagagttgagtacacaattctttagtcctaaaaatactatcaagtgctcgagtccctcattatctttacaacattccaaggcacttgatgacaggatggttttactagacagcagatttgtgactcttagttcatttttttaattgctgaatagcagtgcttagtgcatgggaaatggggatctcaagttaggctagtttggagaaatgatgtgtcatctgtactttgaatccttgaaaatggcaaagttttgcctttgtattttccatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="+" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="26465" stop="27465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26765" g_stop="27164" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="417"/>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="+" ref_id="SGN-E234433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26765" e_stop="27164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTGAGAAGTGTTACCTTGGGATAAATTAGTAGTTGTAGGATAGTAGATTTTTATTTTGTACATAATGTCATGTAAACTATTACAGGGATCCAAAGAGTTGAGTACACAATTCTTTAGTCCTAAAAATACTATCAAGTGCTCGAGTCCCTCATTATCTTTACAACATTCCAAGGCACTTGATGACAGGATGGTTTTACTAGACAGCAGATTTGTGACTCTTAGTTCATTTTTTTAATTGCTGAATAGCAGTGCTTAGTGCATGGGAAATGGGGATCTCAAGTTAGGCTAGTTTGGAGAAATGATGTGTCATCTGTACTTTGAATCCTTGAAAATGGCAAAGTTTTGCCTTTGTATTTTCCATTTA</genome_strand>
        <mrna_strand>AAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTGAGAAGTGTTACCTTGGGATAAATTAGTAGTTGTAGGATAGTAGATTTTTATTTTGTACATAATGTCATGTAAACTATTACAGGGATCCAAAGAGTTGAGTACACAATTCTTTAGTCCTAAAAATACTATCAAGTGCTCGAGTCCCTCATTATCTTTACAACATTCCAAGGCACTTGATGACAGGATGGTTTTACTAGACAGCAGATTTGTGACTCTTAGTTCATTTTTTTAATTGCTGAATAGCAGTGCTTAGTGCATGGGAAATGGGGATCTCAAGTTAGGCTAGTTTGGAGAAATGATGTGTCATCTGTACTTTGAATCCTTGAAAATGGCAAAGTTTTGCCTTTGTATTTTCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="-" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="58871" stop="57541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58576" g_stop="57841" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="-" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58576" e_stop="57841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGATCCTATAGAGCCGGCCGCTTCTAATGGACACAGATTTATTTTGGTTGCCATTGATTATTTCACCAAATGGGTGAAAGCAGCCTCTTACAAGTCAGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAACATGATATGCAGAGTTGGATTTCCAGAGTCCATCATTACTGACAACGGTGCAAATCTTAACAGTCATCTGATGAACGAGATATGTGAACAATTTAAGATTATTCATCAAAGGTCAACTGCTTATCGCCCCCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATTGACAAACAGCTAGGTTGGAATGAAATGTTGCCATATTCTCTGCTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTTGAAGTCGATATACCATCATTGAGGATCATCCAAGAAGCTGAGTTAAGAAACGTGGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCCCCGTCTGCCATGGCCAGTTGTATAGACAAAAAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGTTCAGTTGGTCCTTAAGCGTATTTTTCCTCATCAAGATGAATACAAAGGAAAGTTTGCGCCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="-" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="58871" stop="57582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58576" g_stop="57882" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="-" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58576" e_stop="57882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGATCCTATAGAGCCGGCCGCTTCTAATGGACACAGATTTATTTTGGTTGCCATTGATTATTTCACCAAATGGGTGAAAGCAGCCTCTTACAAGTCAGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAACATGATATGCAGAGTTGGATTTCCAGAGTCCATCATTACTGACAACGGTGCAAATCTTAACAGTCATCTGATGAACGAGATATGTGAACAATTTAAGATTATTCATCAAAGGTCAACTGCTTATCGCCCCCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATTGACAAACAGCTAGGTTGGAATGAAATGTTGCCATATTCTCTGCTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTTGAAGTCGATATACCATCATTGAGGATCATCCAAGAAGCTGAGTTAAGAAACGTGGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCCCCGTCTGCCATGGCCAGTTGTATAGACAAAAAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGTTCAGTTGGTCCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0184M15-8iPKB/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0184M15.1" temp_strand="-" temp_description="C04HBa0184M15.1  CU914543.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0184M15 sequenced_by:sanger upload_account_name:uk">
        <position start="58935" stop="57595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58635" g_stop="57895" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0184M15.1" gen_strand="-" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0184M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58635" e_stop="57895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGATCCTATAGAGCCGGCCGCTTCTAATGGACACAGATTTATTTTGGTTGCCATTGATTATTTCACCAAATGGGTGAAAGCAGCCTCTTACAAGTCAGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAACATGATATGCAGAGTTGGATTTCCAGAGTCCATCATTACTGACAACGGTGCAAATCTTAACAGTCATCTGATGAACGAGATATGTGAACAATTTAAGATTATTCATCAAAGGTCAACTGCTTATCGCCCCCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATTGACAAACAGCTAGGTTGGAATGAAATGTTGCCATATTCTCTGCTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTTGAAGTCGATATACCATCATTGAGGATCATCCAAGAAGCTGAGTTAAGAAACGTGGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCCCCGTCTGCCATGGCCAGTTGTATAGACAAAAAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGTTCAGTTGGTCCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGT-TGCGTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1663" PGL_stop="1006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1663" e_stop="1006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="1663" e_stop="1006" e_length="658"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1663" stop="1006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTCACTTATCTTAGCGGGTTATCTGATCGGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGACTATAGGGTCTATAATGACGAGTGATCAGCATGAACTTTTCACTAAATTCTTAAAGCTGAAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAACTGCTACATAAGATGGACATAGTGGAACGATTCGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACCTGGGCATCATTCTCCAACTTATTTATGGAGAAATATATACCCTGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTAAAGCAAGGAAGGATGTCTGTTGCTGTTTATGAGGCCAAATTTCGTGCGCTATCCAGGTATGCCACTCAGCTTTGCTTCAGTCCACAAGAGAGAATTCGCCGCTTTGTGAAAGTATTGAGGTCAGATTTGCAGATCCCAACCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  F  S  L  I  L  A  G  Y  L  I  G  A  R  H  L  Q  C  F  L  Y  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  *  G  L  *  *  R  V  I  S  M  N  F  S  L  N  S  *  S  *  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  T  A  T  *  D  G  H  S  G  T  I  R  C  *  V  C  D  L  P  V  S  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  Q  L  I  Y  G  E  I  Y  T  L  D  F  E  G  *  E  E  R  *  V  P  E  P  K  A  R  K  D  V  C  C  C  L  *  G  Q  I  S  C  A  I  Q  V  C  H  S  A  L  L  Q  S  T  R  E  N  S  P  L  C  E  S  I  E  V  R  F  A  D  P  N  L  T  G  S  </first_frame>
            <second_frame>  D  D  *  P  G  S  H  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  S  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  E  *  S  A  *  T  F  H  *  I  L  K  A  E  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  N  L  F  M  E  K  Y  I  P  W  T  L  R  D  R  R  R  D  E  F  L  S  L  K  Q  G  R  M  S  V  A  V  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  V  L  R  S  D  L  Q  I  P  T  L  Q  V  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  R  G  Q  T  P  P  V  F  P  V  P  A  P  Q  V  P  G  V  Q  H  A  A  V  V  A  P  R  M  D  A  S  L  E  V  G  T  F  P  R  L  T  I  G  S  I  M  T  S  D  Q  H  E  L  F  T  K  F  L  K  L  K  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  N  C  Y  I  R  W  T  *  W  N  D  S  V  L  S  L  *  P  T  S  F  R  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  P  G  H  H  S  P  T  Y  L  W  R  N  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  E  G  C  L  L  L  F  M  R  P  N  F  V  R  Y  P  G  M  P  L  S  F  A  S  V  H  K  R  E  F  A  A  L  *  K  Y  *  G  Q  I  C  R  S  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0184M15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1452" stop="1006"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKAEKPPVFKGAESEDAYDFLVDCHELLHKMDIVERFGVEFVTYQFQGNAKMWWRSYVECQPAQAPPMTWASFSNLFMEKYIPWTLRDRRRDEFLSLKQGRMSVAVYEAKFRALSRYATQLCFSPQERIRRFVKVLRSDLQIPTLQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19243" PGL_stop="24832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21595" e_stop="21608"/>
            <exon e_start="21694" e_stop="21772"/>
            <exon e_start="22205" e_stop="22500"/>
            <exon e_start="23884" e_stop="24832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="0.997"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21595" e_stop="21608" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.984">
            <gDNA_intron_boundary i_start="21609" i_stop="21693" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21694" e_stop="21772" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21773" i_stop="22204" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="22205" e_stop="22500" e_length="296"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="22501" i_stop="23883" i_length="1383"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="23884" e_stop="24832" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21595" stop="21608"/>
              <exon start="21694" stop="21772"/>
              <exon start="22205" stop="22500"/>
              <exon start="23884" stop="23965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21606" stop="21608"/>
              <exon start="21694" stop="21772"/>
              <exon start="22205" stop="22500"/>
              <exon start="23884" stop="23944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21694" stop="21772"/>
              <exon start="22205" stop="22500"/>
              <exon start="23884" stop="24171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21694" stop="21772"/>
              <exon start="22205" stop="22500"/>
              <exon start="23884" stop="23974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23980" stop="24727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23980" stop="24444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATGCCCAAGCAT : ATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTG : TTTATGAGACATGCAAACTGGGAACTCATTCGCCTCAATTTATGGGAAATGAGATGGAGATAGATTCTGGCAAGAATGCATCTTCTGGTTTTGTTCTGATTGATTGCCCCCAGTCAATGAAGATAGACAGCAGTAGTGCATCTATGCTGGGATCGATCAGTGATTACTTTCTGTCCCTTTCCAATGGATGGGATTTAGAAAGCTATTTGAAGTCGCTCTCAAAAGTTCTCAGAAATTTAAAACTTAGTTCATGCATGACCATGAATCCGAAAGAAGGAAGTACTGGTCCATGTACG : GTGGTATACGTGGTTTGCCCTTTCCCTGAGCCTCTTGCGGTTCTACAGACGGTGATTGAATCTTCTATTGCTGTTGGATCTGGGGTTCTTTCTTCAGATAAAGAGAGGCGGTCTACGCTGCACAATCAAGTCGGGAAGGCCTTAAGTTACTCAGCAGCTGTGGATGAGGCACTCTCAAATGTTTTAACACTTTCTGGGTTTTGTATCCCTAAACTGGTATTGCAGATTGTCACCGTTGATGCAATTTTTAGGGTTACAAGCCCTGCTCTGAGTGAGCTTGTCATACTGAAGGAAATTGCTTTCACAGTTTATAACAAAGCCCGCAGAATATCTCGAGGGTCCCCCAGTGACATGGTTCAGTCGTCATCCATGCCCGGTAGATCTCATCCAGTTCTGATGCAAATGAACTCCCCAGTTCCAGGAATGTGGAAGGACTGTGTTGGTCCTCGAGGCATAGGAACTTCCCTTCAGAGAGAAGCTGACCTTGATGCAAACCTAAGGCCTGGTAGTTGGGACAACTGGCAAGCATCAAGAGGGGGAGGTCTTGGATGTGAGCCAAACAGGATCGGGGATTTTTCTTTTCAGGATGAAATTCGTTATTTGTTTGAGCCCCTTTACATTCTTGCTGAACCAGGTTCATTGGATCGTGGACTTTCATTTCCGATGTCGGGTAATCCAATGACTGAATCTTCAAAGCTTTTGTTGGATGATGGTACAAGTGGAAGTTTTATGCAGAGTTCAGCTTCTTCAGGTGGTGGAGACACTGGACTGAACACTCAGTCTGAAACATCTGTACCAGATGGTTTTGGATCTGCACATCAAAAATCACTTCCAAGCCTGCATTGTTGTTATGGTTGGACTGAAGATTGGCGCTGGCTGGTGTGTATATGGACAGATTCCAGGGGAGAATTGCTTGATAATCATATATATCCATTTGGGGGAATAAGTA</gDNA_template>
            <first_frame> R  C  P  S  I :   *  H  I  T  L  S  A  Q  T  S  M  L  *  Q  Q  L  Q  L  I  F  S  N  S  L  E  L  :  F  M  R  H  A  N  W  E  L  I  R  L  N  L  W  E  M  R  W  R  *  I  L  A  R  M  H  L  L  V  L  F  *  L  I  A  P  S  Q  *  R  *  T  A  V  V  H  L  C  W  D  R  S  V  I  T  F  C  P  F  P  M  D  G  I  *  K  A  I  *  S  R  S  Q  K  F  S  E  I  *  N  L  V  H  A  *  P  *  I  R  K  K  E  V  L  V  H  V  R :   W  Y  T  W  F  A  L  S  L  S  L  L  R  F  Y  R  R  *  L  N  L  L  L  L  L  D  L  G  F  F  L  Q  I  K  R  G  G  L  R  C  T  I  K  S  G  R  P  *  V  T  Q  Q  L  W  M  R  H  S  Q  M  F  *  H  F  L  G  F  V  S  L  N  W  Y  C  R  L  S  P  L  M  Q  F  L  G  L  Q  A  L  L  *  V  S  L  S  Y  *  R  K  L  L  S  Q  F  I  T  K  P  A  E  Y  L  E  G  P  P  V  T  W  F  S  R  H  P  C  P  V  D  L  I  Q  F  *  C  K  *  T  P  Q  F  Q  E  C  G  R  T  V  L  V  L  E  A  *  E  L  P  F  R  E  K  L  T  L  M  Q  T  *  G  L  V  V  G  T  T  G  K  H  Q  E  G  E  V  L  D  V  S  Q  T  G  S  G  I  F  L  F  R  M  K  F  V  I  C  L  S  P  F  T  F  L  L  N  Q  V  H  W  I  V  D  F  H  F  R  C  R  V  I  Q  *  L  N  L  Q  S  F  C  W  M  M  V  Q  V  E  V  L  C  R  V  Q  L  L  Q  V  V  E  T  L  D  *  T  L  S  L  K  H  L  Y  Q  M  V  L  D  L  H  I  K  N  H  F  Q  A  C  I  V  V  M  V  G  L  K  I  G  A  G  W  C  V  Y  G  Q  I  P  G  E  N  C  L  I  I  I  Y  I  H  L  G  E  *  V </first_frame>
            <second_frame>  D  A  Q  A   : Y  D  I  S  R  C  L  P  R  H  Q  C  S  N  N  S  C  N  *  F  F  P  T  A  W  N  C :   L  *  D  M  Q  T  G  N  S  F  A  S  I  Y  G  K  *  D  G  D  R  F  W  Q  E  C  I  F  W  F  C  S  D  *  L  P  P  V  N  E  D  R  Q  Q  *  C  I  Y  A  G  I  D  Q  *  L  L  S  V  P  F  Q  W  M  G  F  R  K  L  F  E  V  A  L  K  S  S  Q  K  F  K  T  *  F  M  H  D  H  E  S  E  R  R  K  Y  W  S  M  Y   : G  G  I  R  G  L  P  F  P  *  A  S  C  G  S  T  D  G  D  *  I  F  Y  C  C  W  I  W  G  S  F  F  R  *  R  E  A  V  Y  A  A  Q  S  S  R  E  G  L  K  L  L  S  S  C  G  *  G  T  L  K  C  F  N  T  F  W  V  L  Y  P  *  T  G  I  A  D  C  H  R  *  C  N  F  *  G  Y  K  P  C  S  E  *  A  C  H  T  E  G  N  C  F  H  S  L  *  Q  S  P  Q  N  I  S  R  V  P  Q  *  H  G  S  V  V  I  H  A  R  *  I  S  S  S  S  D  A  N  E  L  P  S  S  R  N  V  E  G  L  C  W  S  S  R  H  R  N  F  P  S  E  R  S  *  P  *  C  K  P  K  A  W  *  L  G  Q  L  A  S  I  K  R  G  R  S  W  M  *  A  K  Q  D  R  G  F  F  F  S  G  *  N  S  L  F  V  *  A  P  L  H  S  C  *  T  R  F  I  G  S  W  T  F  I  S  D  V  G  *  S  N  D  *  I  F  K  A  F  V  G  *  W  Y  K  W  K  F  Y  A  E  F  S  F  F  R  W  W  R  H  W  T  E  H  S  V  *  N  I  C  T  R  W  F  W  I  C  T  S  K  I  T  S  K  P  A  L  L  L  W  L  D  *  R  L  A  L  A  G  V  Y  M  D  R  F  Q  G  R  I  A  *  *  S  Y  I  S  I  W  G  N  K   </second_frame>
            <third_frame>   M  P  K  H  :  M  T  Y  H  V  V  C  P  D  I  N  A  L  T  T  A  A  T  D  F  F  Q  Q  L  G  T   : V  Y  E  T  C  K  L  G  T  H  S  P  Q  F  M  G  N  E  M  E  I  D  S  G  K  N  A  S  S  G  F  V  L  I  D  C  P  Q  S  M  K  I  D  S  S  S  A  S  M  L  G  S  I  S  D  Y  F  L  S  L  S  N  G  W  D  L  E  S  Y  L  K  S  L  S  K  V  L  R  N  L  K  L  S  S  C  M  T  M  N  P  K  E  G  S  T  G  P  C  T  :  V  V  Y  V  V  C  P  F  P  E  P  L  A  V  L  Q  T  V  I  E  S  S  I  A  V  G  S  G  V  L  S  S  D  K  E  R  R  S  T  L  H  N  Q  V  G  K  A  L  S  Y  S  A  A  V  D  E  A  L  S  N  V  L  T  L  S  G  F  C  I  P  K  L  V  L  Q  I  V  T  V  D  A  I  F  R  V  T  S  P  A  L  S  E  L  V  I  L  K  E  I  A  F  T  V  Y  N  K  A  R  R  I  S  R  G  S  P  S  D  M  V  Q  S  S  S  M  P  G  R  S  H  P  V  L  M  Q  M  N  S  P  V  P  G  M  W  K  D  C  V  G  P  R  G  I  G  T  S  L  Q  R  E  A  D  L  D  A  N  L  R  P  G  S  W  D  N  W  Q  A  S  R  G  G  G  L  G  C  E  P  N  R  I  G  D  F  S  F  Q  D  E  I  R  Y  L  F  E  P  L  Y  I  L  A  E  P  G  S  L  D  R  G  L  S  F  P  M  S  G  N  P  M  T  E  S  S  K  L  L  L  D  D  G  T  S  G  S  F  M  Q  S  S  A  S  S  G  G  G  D  T  G  L  N  T  Q  S  E  T  S  V  P  D  G  F  G  S  A  H  Q  K  S  L  P  S  L  H  C  C  Y  G  W  T  E  D  W  R  W  L  V  C  I  W  T  D  S  R  G  E  L  L  D  N  H  I  Y  P  F  G  G  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0184M15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21597" stop="21608"/>
                    <exon start="21694" stop="21772"/>
                    <exon start="22205" stop="22500"/>
                    <exon start="23884" stop="24831"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MPKHMTYHVVCPDINALTTAATDFFQQLGTVYETCKLGTHSPQFMGNEMEIDSGKNASSGFVLIDCPQSMKIDSSSASMLGSISDYFLSLSNGWDLESYLKSLSKVLRNLKLSSCMTMNPKEGSTGPCTVVYVVCPFPEPLAVLQTVIESSIAVGSGVLSSDKERRSTLHNQVGKALSYSAAVDEALSNVLTLSGFCIPKLVLQIVTVDAIFRVTSPALSELVILKEIAFTVYNKARRISRGSPSDMVQSSSMPGRSHPVLMQMNSPVPGMWKDCVGPRGIGTSLQREADLDANLRPGSWDNWQASRGGGLGCEPNRIGDFSFQDEIRYLFEPLYILAEPGSLDRGLSFPMSGNPMTESSKLLLDDGTSGSFMQSSASSGGGDTGLNTQSETSVPDGFGSAHQKSLPSLHCCYGWTEDWRWLVCIWTDSRGELLDNHIYPFGGIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19243" e_stop="19398"/>
            <exon e_start="20021" e_stop="20294"/>
            <exon e_start="20366" e_stop="20498"/>
            <exon e_start="21521" e_stop="21608"/>
            <exon e_start="21694" e_stop="21817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.934" e_score="0.987"/>
          <exon-intron don_prob="0.191" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.984" e_score="0.977"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="19243" e_stop="19398" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.934">
            <gDNA_intron_boundary i_start="19399" i_stop="20020" i_length="622"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20021" e_stop="20294" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.191" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20295" i_stop="20365" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20366" e_stop="20498" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.933" acc_prob="0.964">
            <gDNA_intron_boundary i_start="20499" i_stop="21520" i_length="1022"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="21521" e_stop="21608" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.984">
            <gDNA_intron_boundary i_start="21609" i_stop="21693" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="21694" e_stop="21817" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19243" stop="19398"/>
              <exon start="20021" stop="20294"/>
              <exon start="20366" stop="20498"/>
              <exon start="21521" stop="21608"/>
              <exon start="21694" stop="21817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGATCTTATGGTTGGCTCGCACTGCAGGAGCAGTGGAGGCGTGGCTTTTCATGTCGACCATCCATGGTTCATGCAGGTTGTGGGGGAGTATTGGCTTCCTGTCATTCGCTTGATATTGCTGGTGTGGAGCTTATTGATCCACTTTCAGCTGAT : GTTCAGGCATCATTTACCCTCACTCTGCTGCAGAATGATATAAAAGCAGCTCTGAAATCTGCTTTCAGTACAATGGAAGGTCCTTTATCTGTTGTTGATTGGTGCAAAGGTCGCAGTCAATCAAATGATGGGGGAATATCTGGTGATGGTTTTTCTGCAGAGTCCACTGCAAGTGCAAGTGAATGTCGAGATTCTTCGAGTACCATATCATTGTCTGTTGGAGAACCTATAAGTCCATCTCAGTCCTCTGCTGGTGGATCATCTAGTTTGAGGG : ATGGAATTAGGGTGGATGAGGCAAGTGAGCGCAGATTAAGCCAAGACACTTGTCTATCAGAGTCGGAGCAGCTTCCAGGATCAAGGCTTAGGGCAACATTGGCTGCAGTACCGTATCCTGCTATACTTGTTGG : ATATCAAGACGATTGGCTTAAGACGTCACCTAGTTCTCTTCAGTTCTGGGAGAAGGCACCTTTTGAGCCTTATGCGATGCCCAAGCAT : ATGACATATCACGTTGTCTGCCCAGACATCAATGCTCTAACAACAGCTGCAACTGATTTTTTCCAACAGCTTGGAACTGGTTAGTATTCTTAACTATCATACTAAACAGAAGATAGTGTATCGG</gDNA_template>
            <first_frame> D  G  S  Y  G  W  L  A  L  Q  E  Q  W  R  R  G  F  S  C  R  P  S  M  V  H  A  G  C  G  G  V  L  A  S  C  H  S  L  D  I  A  G  V  E  L  I  D  P  L  S  A  D  :  V  Q  A  S  F  T  L  T  L  L  Q  N  D  I  K  A  A  L  K  S  A  F  S  T  M  E  G  P  L  S  V  V  D  W  C  K  G  R  S  Q  S  N  D  G  G  I  S  G  D  G  F  S  A  E  S  T  A  S  A  S  E  C  R  D  S  S  S  T  I  S  L  S  V  G  E  P  I  S  P  S  Q  S  S  A  G  G  S  S  S  L  R   : D  G  I  R  V  D  E  A  S  E  R  R  L  S  Q  D  T  C  L  S  E  S  E  Q  L  P  G  S  R  L  R  A  T  L  A  A  V  P  Y  P  A  I  L  V  G :   Y  Q  D  D  W  L  K  T  S  P  S  S  L  Q  F  W  E  K  A  P  F  E  P  Y  A  M  P  K  H  :  M  T  Y  H  V  V  C  P  D  I  N  A  L  T  T  A  A  T  D  F  F  Q  Q  L  G  T  G  *  Y  S  *  L  S  Y  *  T  E  D  S  V  S  </first_frame>
            <second_frame>  M  D  L  M  V  G  S  H  C  R  S  S  G  G  V  A  F  H  V  D  H  P  W  F  M  Q  V  V  G  E  Y  W  L  P  V  I  R  L  I  L  L  V  W  S  L  L  I  H  F  Q  L  M :   F  R  H  H  L  P  S  L  C  C  R  M  I  *  K  Q  L  *  N  L  L  S  V  Q  W  K  V  L  Y  L  L  L  I  G  A  K  V  A  V  N  Q  M  M  G  E  Y  L  V  M  V  F  L  Q  S  P  L  Q  V  Q  V  N  V  E  I  L  R  V  P  Y  H  C  L  L  E  N  L  *  V  H  L  S  P  L  L  V  D  H  L  V  *  G  :  M  E  L  G  W  M  R  Q  V  S  A  D  *  A  K  T  L  V  Y  Q  S  R  S  S  F  Q  D  Q  G  L  G  Q  H  W  L  Q  Y  R  I  L  L  Y  L  L   : D  I  K  T  I  G  L  R  R  H  L  V  L  F  S  S  G  R  R  H  L  L  S  L  M  R  C  P  S  I :   *  H  I  T  L  S  A  Q  T  S  M  L  *  Q  Q  L  Q  L  I  F  S  N  S  L  E  L  V  S  I  L  N  Y  H  T  K  Q  K  I  V  Y  R </second_frame>
            <third_frame>   W  I  L  W  L  A  R  T  A  G  A  V  E  A  W  L  F  M  S  T  I  H  G  S  C  R  L  W  G  S  I  G  F  L  S  F  A  *  Y  C  W  C  G  A  Y  *  S  T  F  S  *   : C  S  G  I  I  Y  P  H  S  A  A  E  *  Y  K  S  S  S  E  I  C  F  Q  Y  N  G  R  S  F  I  C  C  *  L  V  Q  R  S  Q  S  I  K  *  W  G  N  I  W  *  W  F  F  C  R  V  H  C  K  C  K  *  M  S  R  F  F  E  Y  H  I  I  V  C  W  R  T  Y  K  S  I  S  V  L  C  W  W  I  I  *  F  E  G :   W  N  *  G  G  *  G  K  *  A  Q  I  K  P  R  H  L  S  I  R  V  G  A  A  S  R  I  K  A  *  G  N  I  G  C  S  T  V  S  C  Y  T  C  W  :  I  S  R  R  L  A  *  D  V  T  *  F  S  S  V  L  G  E  G  T  F  *  A  L  C  D  A  Q  A   : Y  D  I  S  R  C  L  P  R  H  Q  C  S  N  N  S  C  N  *  F  F  P  T  A  W  N  W  L  V  F  L  T  I  I  L  N  R  R  *  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0184M15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19243" stop="19398"/>
                    <exon start="20021" stop="20294"/>
                    <exon start="20366" stop="20498"/>
                    <exon start="21521" stop="21608"/>
                    <exon start="21694" stop="21777"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGSYGWLALQEQWRRGFSCRPSMVHAGCGGVLASCHSLDIAGVELIDPLSADVQASFTLTLLQNDIKAALKSAFSTMEGPLSVVDWCKGRSQSNDGGISGDGFSAESTASASECRDSSSTISLSVGEPISPSQSSAGGSSSLRDGIRVDEASERRLSQDTCLSESEQLPGSRLRATLAAVPYPAILVGYQDDWLKTSPSSLQFWEKAPFEPYAMPKHMTYHVVCPDINALTTAATDFFQQLGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26217" PGL_stop="27164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26217" e_stop="27164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="26217" e_stop="27164" e_length="948"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26217" stop="26803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26217" stop="26803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26220" stop="26549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26765" stop="27164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCCTGACTGCTGAATCACCACCACTTGCCCATCTTCTCCACAGCAAGGGATGTGCCATTCCCCTTTCAACAGGTTTTGTGGTTTCAAAAGCTGTACCTACAATGAGGAGAGATGTAAGGAGTATCTCAAAAGAAGAATGGCCCTCAGTTCTTTCTGTCAGCCTCGTTGATTACTATGGTGGCAGCAACGTCATCCATGAAAAGTTTTTGAAGGGTGTTGGTAAGGTTGGGGGAAGGGGTACAGGTTCGGAAACAAGAGATGTTGAAATAGCAGCTCACTTGATTCTTGAGAACATAGCTGCAGAGCTCCATGCTTTATCATGGATGACTGTAAGTCCGGCATACTTGGAGAGAAGATCTGCTTTGCCTTTACATTGTGACATGGTATTAAGGCTTCGGAGACTGCTTCACTTTGCCGATAAGGAAGTTTCTCGGCAACCTGTGAAAAGCCAAGTTTAGGATACGTGTAAATTGCAGCATACACACAACTTGTTCAAGCCGTCCATCTTGTGTCTTTGTTTCGTTATAGAAACAGACTGTAAACACAAAATGCATATACTAGTTCGCTGGAGAACATCCTTTCTGAGAAGTGTTACCTTGGGATAAATTAGTAGTTGTAGGATAGTAGATTTTTATTTTGTACATAATGTCATGTAAACTATTACAGGGATCCAAAGAGTTGAGTACACAATTCTTTAGTCCTAAAAATACTATCAAGTGCTCGAGTCCCTCATTATCTTTACAACATTCCAAGGCACTTGATGACAGGATGGTTTTACTAGACAGCAGATTTGTGACTCTTAGTTCATTTTTTTAATTGCTGAATAGCAGTGCTTAGTGCATGGGAAATGGGGATCTCAAGTTAGGCTAGTTTGGAGAAATGATGTGTCATCTGTACTTTGAATCCTTGAAAATGGCAAAGTTTTGCCTTTGTATTTTCCATTTA</gDNA_template>
            <first_frame> L  A  *  L  L  N  H  H  H  L  P  I  F  S  T  A  R  D  V  P  F  P  F  Q  Q  V  L  W  F  Q  K  L  Y  L  Q  *  G  E  M  *  G  V  S  Q  K  K  N  G  P  Q  F  F  L  S  A  S  L  I  T  M  V  A  A  T  S  S  M  K  S  F  *  R  V  L  V  R  L  G  E  G  V  Q  V  R  K  Q  E  M  L  K  *  Q  L  T  *  F  L  R  T  *  L  Q  S  S  M  L  Y  H  G  *  L  *  V  R  H  T  W  R  E  D  L  L  C  L  Y  I  V  T  W  Y  *  G  F  G  D  C  F  T  L  P  I  R  K  F  L  G  N  L  *  K  A  K  F  R  I  R  V  N  C  S  I  H  T  T  C  S  S  R  P  S  C  V  F  V  S  L  *  K  Q  T  V  N  T  K  C  I  Y  *  F  A  G  E  H  P  F  *  E  V  L  P  W  D  K  L  V  V  V  G  *  *  I  F  I  L  Y  I  M  S  C  K  L  L  Q  G  S  K  E  L  S  T  Q  F  F  S  P  K  N  T  I  K  C  S  S  P  S  L  S  L  Q  H  S  K  A  L  D  D  R  M  V  L  L  D  S  R  F  V  T  L  S  S  F  F  *  L  L  N  S  S  A  *  C  M  G  N  G  D  L  K  L  G  *  F  G  E  M  M  C  H  L  Y  F  E  S  L  K  M  A  K  F  C  L  C  I  F  H  L </first_frame>
            <second_frame>  L  P  D  C  *  I  T  T  T  C  P  S  S  P  Q  Q  G  M  C  H  S  P  F  N  R  F  C  G  F  K  S  C  T  Y  N  E  E  R  C  K  E  Y  L  K  R  R  M  A  L  S  S  F  C  Q  P  R  *  L  L  W  W  Q  Q  R  H  P  *  K  V  F  E  G  C  W  *  G  W  G  K  G  Y  R  F  G  N  K  R  C  *  N  S  S  S  L  D  S  *  E  H  S  C  R  A  P  C  F  I  M  D  D  C  K  S  G  I  L  G  E  K  I  C  F  A  F  T  L  *  H  G  I  K  A  S  E  T  A  S  L  C  R  *  G  S  F  S  A  T  C  E  K  P  S  L  G  Y  V  *  I  A  A  Y  T  Q  L  V  Q  A  V  H  L  V  S  L  F  R  Y  R  N  R  L  *  T  Q  N  A  Y  T  S  S  L  E  N  I  L  S  E  K  C  Y  L  G  I  N  *  *  L  *  D  S  R  F  L  F  C  T  *  C  H  V  N  Y  Y  R  D  P  K  S  *  V  H  N  S  L  V  L  K  I  L  S  S  A  R  V  P  H  Y  L  Y  N  I  P  R  H  L  M  T  G  W  F  Y  *  T  A  D  L  *  L  L  V  H  F  F  N  C  *  I  A  V  L  S  A  W  E  M  G  I  S  S  *  A  S  L  E  K  *  C  V  I  C  T  L  N  P  *  K  W  Q  S  F  A  F  V  F  S  I   </second_frame>
            <third_frame>   C  L  T  A  E  S  P  P  L  A  H  L  L  H  S  K  G  C  A  I  P  L  S  T  G  F  V  V  S  K  A  V  P  T  M  R  R  D  V  R  S  I  S  K  E  E  W  P  S  V  L  S  V  S  L  V  D  Y  Y  G  G  S  N  V  I  H  E  K  F  L  K  G  V  G  K  V  G  G  R  G  T  G  S  E  T  R  D  V  E  I  A  A  H  L  I  L  E  N  I  A  A  E  L  H  A  L  S  W  M  T  V  S  P  A  Y  L  E  R  R  S  A  L  P  L  H  C  D  M  V  L  R  L  R  R  L  L  H  F  A  D  K  E  V  S  R  Q  P  V  K  S  Q  V  *  D  T  C  K  L  Q  H  T  H  N  L  F  K  P  S  I  L  C  L  C  F  V  I  E  T  D  C  K  H  K  M  H  I  L  V  R  W  R  T  S  F  L  R  S  V  T  L  G  *  I  S  S  C  R  I  V  D  F  Y  F  V  H  N  V  M  *  T  I  T  G  I  Q  R  V  E  Y  T  I  L  *  S  *  K  Y  Y  Q  V  L  E  S  L  I  I  F  T  T  F  Q  G  T  *  *  Q  D  G  F  T  R  Q  Q  I  C  D  S  *  F  I  F  L  I  A  E  *  Q  C  L  V  H  G  K  W  G  S  Q  V  R  L  V  W  R  N  D  V  S  S  V  L  *  I  L  E  N  G  K  V  L  P  L  Y  F  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0184M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26219" stop="26677"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLTAESPPLAHLLHSKGCAIPLSTGFVVSKAVPTMRRDVRSISKEEWPSVLSVSLVDYYGGSNVIHEKFLKGVGKVGGRGTGSETRDVEIAAHLILENIAAELHALSWMTVSPAYLERRSALPLHCDMVLRLRRLLHFADKEVSRQPVKSQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="58635" PGL_stop="57841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58635" e_stop="57841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="58635" e_stop="57841" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58635" stop="57895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58576" stop="57841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58576" stop="57882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGATCCTATAGAGCCGGCCGCTTCTAATGGACACAGATTTATTTTGGTTGCCATTGATTATTTCACCAAATGGGTGAAAGCAGCCTCTTACAAGTCAGTAACCAAGAAAGTGGTGGCCGATTTTGTCCGCAACAACATGATATGCAGAGTTGGATTTCCAGAGTCCATCATTACTGACAACGGTGCAAATCTTAACAGTCATCTGATGAACGAGATATGTGAACAATTTAAGATTATTCATCAAAGGTCAACTGCTTATCGCCCCCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAATATCAAAAAGATTCTGAGGAAAATGATTGACAAACAGCTAGGTTGGAATGAAATGTTGCCATATTCTCTGCTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATATGGAACAGAAGCAGTCGTACCTGTTGAAGTCGATATACCATCATTGAGGATCATCCAAGAAGCTGAGTTAAGAAACGTGGAGTGGGTTAGCAAACGGATTGATCAACTAGCTTTGATTGATGAGAAGAGAATGGTCCCCGTCTGCCATGGCCAGTTGTATAGACAAAAAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGTTCAGTTGGTCCTTAAGCGTATTTTTCCTCATCAAGATGAATACAAAGGAAAGTTTGCGCCAAACTG</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  G  R  F  *  W  T  Q  I  Y  F  G  C  H  *  L  F  H  Q  M  G  E  S  S  L  L  Q  V  S  N  Q  E  S  G  G  R  F  C  P  Q  Q  H  D  M  Q  S  W  I  S  R  V  H  H  Y  *  Q  R  C  K  S  *  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  S  K  V  N  C  L  S  P  P  N  E  R  S  C  R  G  R  Q  Q  E  Y  Q  K  D  S  E  E  N  D  *  Q  T  A  R  L  E  *  N  V  A  I  F  S  A  R  L  S  N  D  G  Q  N  I  D  W  G  Y  S  I  L  A  S  I  W  N  R  S  S  R  T  C  *  S  R  Y  T  I  I  E  D  H  P  R  S  *  V  K  K  R  G  V  G  *  Q  T  D  *  S  T  S  F  D  *  *  E  E  N  G  P  R  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  C  S  V  G  P  *  A  Y  F  S  S  S  R  *  I  Q  R  K  V  C  A  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  D  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  K  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  M  I  C  R  V  G  F  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  N  E  I  C  E  Q  F  K  I  I  H  Q  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  L  G  W  N  E  M  L  P  Y  S  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  D  I  P  S  L  R  I  I  Q  E  A  E  L  R  N  V  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  P  V  C  H  G  Q  L  Y  R  Q  K  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  V  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  I  L  *  S  R  P  L  L  M  D  T  D  L  F  W  L  P  L  I  I  S  P  N  G  *  K  Q  P  L  T  S  Q  *  P  R  K  W  W  P  I  L  S  A  T  T  *  Y  A  E  L  D  F  Q  S  P  S  L  L  T  T  V  Q  I  L  T  V  I  *  *  T  R  Y  V  N  N  L  R  L  F  I  K  G  Q  L  L  I  A  P  K  *  T  E  L  *  R  P  P  T  R  I  S  K  R  F  *  G  K  *  L  T  N  S  *  V  G  M  K  C  C  H  I  L  C  *  V  I  E  R  R  S  E  H  R  L  G  L  L  H  T  C  *  Y  M  E  Q  K  Q  S  Y  L  L  K  S  I  Y  H  H  *  G  S  S  K  K  L  S  *  E  T  W  S  G  L  A  N  G  L  I  N  *  L  *  L  M  R  R  E  W  S  P  S  A  M  A  S  C  I  D  K  K  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  F  S  W  S  L  S  V  F  F  L  I  K  M  N  T  K  E  S  L  R  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0184M15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58634" stop="57843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIDPIEPAASNGHRFILVAIDYFTKWVKAASYKSVTKKVVADFVRNNMICRVGFPESIITDNGANLNSHLMNEICEQFKIIHQRSTAYRPQMNGAVEAANKNIKKILRKMIDKQLGWNEMLPYSLLGYRTTVRTSTGATPYLLVYGTEAVVPVEVDIPSLRIIQEAELRNVEWVSKRIDQLALIDEKRMVPVCHGQLYRQKMTRAFHKRVRARNFEVVQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 35120 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2195 bytes was the average size of a spliced alignment
$ 9368 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2342 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 90 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:25:27
-->
