<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:25:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705017" ref_strand="+" ref_description="SGN-E705017 [FA25DG03]">
      <seq>gagacactccaaattgcgtattcgagaagattagctcagagataaaccctaaatcgcaatggagagtgcgttcgctagtgcctctgcgatcagcgaccaacgccagaaaatcgaacagtacaagcacattctgtccaccgttcttgcatcaagcgatatccaacaagccaagcaattcatcgatcacatgctatcggatgacgtgcccttggtggtatctagacagctattgcagacatttgcccaggaattcgatagattggaacctgatgttcaaaaggaagtagcacactatactctcaaccagatacagcctcgtgtggtgtcctttgaagaacaagtgttgatcattcgggaaaaacttgcagaattatatgagtctgagcaacaatggtcaaaagcagctcagatgcttagtggcatcgatttagactctgcaatgagattcgttgatgatacattcagaatttcaaaatgtgtccaaattgctcgtctctatctggaggatgatgatgcagttaatgcagaagcgtttataaataaagcttcctttaaagttaacaacattaagaatgaagtattgaatttgcagtacaaggtttgctatgctaggattttggatttgaagagaaaattcttggaagctgccttgcgttactatgacatttctcagattgagaagcgacaaattggtgacgaagaaatcgatgaagctgccttagaacaagctctggcagctgctgtgacgtgcacaattttggctgcagcaggtcctcaacgatctcgtgtacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="7150" stop="1579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6850" g_stop="6663" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6662" i_stop="5582" i_length="1081">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5581" g_stop="5430" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="340" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5429" i_stop="4487" i_length="943">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4486" g_stop="4383" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="444" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4382" i_stop="4282" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4281" g_stop="4221" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="505" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4220" i_stop="2624" i_length="1597">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2623" g_stop="2531" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="598" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2530" i_stop="2434" i_length="97">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2433" g_stop="2333" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="699" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2332" i_stop="1975" i_length="358">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1974" g_stop="1879" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="795" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E705017" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6850" e_stop="6663"/>
          <exon e_start="5581" e_stop="5430"/>
          <exon e_start="4486" e_stop="4383"/>
          <exon e_start="4281" e_stop="4221"/>
          <exon e_start="2623" e_stop="2531"/>
          <exon e_start="2433" e_stop="2333"/>
          <exon e_start="1974" e_stop="1879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACTCCAAATTGCGTATTCGAGAAGATTAGCTCAGAGATAAACCCTAAATTGCAATGGAGAGTGCGTTCGCTAGTGCCTCTGCCATCAGCGACCAACGCCAGAAAATCGAACAGTACAAGCACATTCTCTCCACCGTTCTCGCATCAAGCGATATCCAACAAGCCAAGCAGTTCATCGATCACAGTACGTTTTTCTCGTTGTTTCATCATAATTTCGCTGTTAATTTTTTGTTCATCTTCTATAATTCTCAGTTGAAATAGATGTTCGAAGATTCATATAGTCAGATTGTAACCGGTTTGAGATTGAGAGGTTGTTTGATTGAGATTGTGTACAATTATGTCGCGCCAGTTATAATCTCATCACAGTTTTGCTGTTAATTTTATGTTCATGTTTTATATTTCTCAGTTGAAACAGATGTTAGAAGATTTATATAGTCATATTCTATCTGGTTTGGGATTGAGCCATTGGTTGGTTGAGAATGTGTTCGGTTATGCAGTGCAGTTACTGCCTCATTATAATTTTGCTGTTAATTTATGTTCATGTTATATATTTCTCAGCTGGATAGATATAGAAGATATATATAGTTAGATTCTAACTGGTTTGAGATTGAGCCGTTATTTTGATTTAAGTTTATTTACGACTATGCAGTTCAGTTACTATCTCATCATAATTTTGCTATTTATGTTGCATTCATGTTTTATGTCTCTCAGCTGAAATAGATATAGAAGATTGATATATAGTCATATTCGTACTAGTTGGGATTGAGCCGCTGTTTGATTGAGATTGTGTGTGATTTATGCATTGCAGCAACTATTTCATCACAATTTTCTGTTAGTTTTATGTTCATGTTGTAGATTTCTCGGTTGAAATAGATATAGATGATTTATATAGTCAGATACTAACTGGTTTGAGATTGAGCCACTGTTTGATTGAGACTGTACGATTATGCAGTGTAGTTACTATCTAATCATAATTTTGCTACTTGTTTTATTTTTCATGTTGTATATGTCTAGCTGAAATAATATGTATAGACAATTTGTGCAGTCAGATTCCAGTTGGTTTGCAATTGAGCCACTGTTTGATTGAGATTGTGTATGACTATGCAGTGCAATTACCATCCAGCTGTCTAATCTTAATTTTTCCTGTAATTTTTATATTCACGTTGTATATTCTCAGCTGAAATCTAAATAGAATATTTATAGTAAGATTCTAACTAATTTGGGGTTGAGCCGCTGTTGTTTGATTGAGTGTGTACATTATGCAGTGCTATCGGATGACGTACCCTTGGTGGTATCTAGACAGCTATTGCAGACATTTGCCCAGGAATTCGATAGATTGGAACCTGATGTTCAAAAGGAAGTAGCACACTATACTCTCAACCAGATACAGCCTCGTGTGGTGTCCTTTGAAGAACAAGTATGCTTTGATGTTTCTATTTTGTTTCTTGTCAGATTCTTGACAACTCTTTTGCAGCCCATAGTGAACGATACTTGGACTTACATTAATGCCTCATATATCTCTGAAATTTGGTGCTTCAGAATGTCACTAGCATCAGTTTGTCTTTTATTTTGCTTTGTCTGTTGCATCAGGTGGTGCATATGTATTTGTAAGGGTGTAGCATTTGGATGTTTGTAATTTCATTTCTTAGAACTTCATAAGAGAACAGCAAGAATGCTCTATCAAGAAAAAATACAGAGAGGAACATGGTATGTAGAAATAGAACTATTGAATCAGCATGACAACATCTCTGCCACCTAAAGAGAAGGCCTGTTTTAACGATTGAAATCACGTTATTTTATTAATGATGGATGGGAAGTACTTATCAGAAAAAAGGATGGCAAATTTCTAAATAATTGTCTTTCAGAAAGTAATCTCTTTCTAATTGACCATTAAAGTTAGCATCTTTATTTTTATTAAAACCAGTTAAAAGAATAGGCTAGAAAAGAATGAGTGTAGTACCAGGAACTCAATACACGGGCCACAACCCACATTGGGACCATGGGGTTGTTTATTATGAAGTGTGTTTTTTGAGTTGGTGTTGGATGGAACTATTGCATTGACACCTTTGATTCCTTTTCGATGGAAGTGATTTTAAGAACTGAATTTTTTGAGAGTGGGCTAGCGCCAAAGTCACAGAATTATTTGTTTATCTTCCGATTAAAAAGTTTTTCGGGAAATCATAGTCATCTTAAAATTTGATGTGTCTCGAGTATTTTAGTTTTGAGAAAATGGTACAAATGAAGGTCAAAATTGGAACTCAGCATATTGTCTGTTGTCATCAAGAGATCTCCACATACAGGTTCTTTTGATCTTTTATGTTTTTACTGCCCATTTCTAAAACAAAATCCCATCTTTTCAGGTGTTGATCATTCGGGAAAAACTTGCAGAATTATATGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTTAGTGGCATCGATTTAGACTCTGCAATGAGGTCTGTGTTATACTTCTACTTATCTTTGCTTGCCTGCTGCTGTGTCCCTTAACTTTTCTTTGGAAGCTGAAATTTCTATCGTCGCACTGCTTCTTCTGCAGATTCGTTGATGATACATTCAGAATTTCAAAATGTGTCCAAATTGCTCGTCTCTATCTGGAGGTTGGATTTTTCTTTTTCTTTTCTTTCTATACTTCTAATGCCAAGTAAACATCTCCAAGTTAACGATCCTTGTTTGGTTTGGTAGTGCACCTTTCAACTTGCCTGACAATTGATCTGCTCTAAAGAGGAAGAGGCGAAATCAATTCATCAATATATGTGCTGGAGTGACCTATCAATTTTTTTAGTTTGGTTAACTAATAGTTAATATTTATAAGAAAACAATTAATAACTTGCTAGTTTGAGCTATAGGGCTTTGTTGTAGTGCAAGTGTATTGATTACGGGAATATTATATAGAAAGCTTTCTTAAAATCTAGAATGAAGTTTTGATTCTGTACATGCCATATCATGAATTAGTAGCTGCTTCCAATTAAAAAAAATGCTAATTGTGTTGAACTTTCCATTTTTGTAATAGTTATGGAATCTCCATGAGTAAACTATAGTCCACACAACCATATCTCCCAATTGAAAAAGATAATTACTACATGAGACCACACATTAGATAAAGGAAAAATCTTTCTTGTTTCTTTTTTATTTCTATATTATATAGGTATGTACAACTTTATCATCAATTTCCTTTACCGATCAAAAGTAGTTTCTAGTAAGTTTGCCCAAACTGCTTCAAACACCTAAGGAACCACCAAAAGTTTTTTCTGCAAAAAAGAGTTTTTTCTTAGCTGCACCCAAGGGTGTAGCCTAGTGGTCAATGAAGAGGGTTGAGAACTGTGAGGCCTTAGGTTCAATTCCCAGCGGAGACAAAAAAGCTAGGTGATTCTTTTCCATTTTGTCTAAGCCTTGGTGGATAGAGTTACCAGTACCTATGTCAGTTGACCTGGAAACCACGATTTAAAAAGGAGTTTTCCCTAACTCCTTCCTTCGCGAGGAGGTCTACAACCCTGTTTACTCTCGATAACTTGAATTTTCTGCATAAGAGCTAGCAATTCAGTTAAGAGTATTTGTGGTGATAGATATTCTCTCCAATCACCATTTATTTTTCGAAGCACACCACCCTGCCGATTCCCCCTTGGCTTGGGTTTCCTAATGAGGATCCGTCAATGTAAAGTTTGTTGGAAGTAGAAACCTTTTCCGTGAGGTTCTCAATTAATACTGATAGTGTTCTTGGAAAAAAAAGAGACAGTAATTGGTGTTCCCCGGTTAGAAATTTGGTCTAGTTCTGAAGCGTTAAATACTTTCAGGAACGTTAGTAGGAAACAAATGAGTGTGCACTGATTTTTGTTAAGAAAAAGGTAACAAATGAATATGTAGTATGTGAGCTCCTTTCTATGTGGCATTTATTCTGCAAGTTGTACCGATGTTGTCTTTCTTCTTGATGAGTAAACCTTTTTCGGTGCTAATGTGACTTGTTAACTAGTGTGCTATGTACATTCTAAGTATCTTGGTTTCCTTTCAATTGTATTGTTCTGCTTACTATCAAAAGGAAAATTAGAGTTGTAGATTTGGTTCCTGTACTGCTACTATGCACCCTGCTATTGTCTGCTGTTTATATGCATTGATCTGAAAAAGTTCAGTCTACTTCCATTATTTTGGTTCTCTTTGGCATTCTAAGTTTCTAACAGTGTCCAATTCCTTCTTTGGCAGGATGATGATGCAGTTAATGCAGAAGCGTTTATAAATAAAGCTTCCTTTAAAGTTAACAACATTAAGAATGAAGTATTGAATTTGCAGTACAAGGTTGTTATCATATGATCTAGGGCATTTTTTATTTTTGAGCATGTCACCGTCACTGGCTAATATGTCAACTCAACTATTTCCTGAATGATTATTTCAGGTTTGCTATGCTAGGATTTTGGATTTGAAGAGAAAATTCTTGGAAGCTGCCTTGCGTTACTATGACATTTCTCAGATTGAGAAGCGACAAATTGGTGACGAGTAAGTTTTCCAGAAAATACATCATGTTAAAATAATGCTTCTCTCAACGATTTTTGAGTATTTAAAATTGTCTGGCTAGTGAGTGCATATTATATGTTTGCAAGCTCTTAGGAAAAGGTAGCAGACACTTTAACTCTTGTTCTTTGTGTATATGGGAAATATAATCTGCAATCCAAGCGGAACTGATAAGGTCTACGGCTTAGGAAAACTAAGAATATGCTTATGTTCCAAGATCAAAGGTTTAGCTTTTGTCTTGAATAATGTTATACACATCCTGATGTCTGTGATCTTTCTTGGTACTATGCCTCCTTTATTTAATTGAGCACAGCATGAAGCTTAATGATTCTTTACGCTACAGAGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGC</genome_strand>
        <mrna_strand>GAGACACTCCAAATTGCGTATTCGAGAAGATTAGCTCAGAGATAAACCCTAAATCGCAATGGAGAGTGCGTTCGCTAGTGCCTCTGCGATCAGCGACCAACGCCAGAAAATCGAACAGTACAAGCACATTCTGTCCACCGTTCTTGCATCAAGCGATATCCAACAAGCCAAGCAATTCATCGATCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCGGATGACGTGCCCTTGGTGGTATCTAGACAGCTATTGCAGACATTTGCCCAGGAATTCGATAGATTGGAACCTGATGTTCAAAAGGAAGTAGCACACTATACTCTCAACCAGATACAGCCTCGTGTGGTGTCCTTTGAAGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATCATTCGGGAAAAACTTGCAGAATTATATGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTTAGTGGCATCGATTTAGACTCTGCAATGAG.....................................................................................................ATTCGTTGATGATACATTCAGAATTTCAAAATGTGTCCAAATTGCTCGTCTCTATCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGCAGTTAATGCAGAAGCGTTTATAAATAAAGCTTCCTTTAAAGTTAACAACATTAAGAATGAAGTATTGAATTTGCAGTACAAG.................................................................................................GTTTGCTATGCTAGGATTTTGGATTTGAAGAGAAAATTCTTGGAAGCTGCCTTGCGTTACTATGACATTTCTCAGATTGAGAAGCGACAAATTGGTGACGA......................................................................................................................................................................................................................................................................................................................................................................AGAAATCGATGAAGCTGCCTTAGAACAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339652" ref_strand="+" ref_description="SGN-E339652 [cTOE-16-C7]">
      <seq>tcgacgagacactccaaattgcgtattcgagaagattagctcagagataaaccctaaattgcaatggagagtgcgttcgctagtgcctctgccatcagagaccaacgccagaaaatcgaacagtacaagcaccattctctccaccgttctcgcatcaagcgatatccaacaagccaagcagttcatcgatcacatgctatcggatgacgtacccttggtggtatctagacagctattgcagacatttgcccaggaattcgatagattggaacctgatgttcaaaaggaagtagcacactatactctcaaccagataccagcctcgtgtggtgtcctttgaagaacaagtgttgatcattcgggaaaaacttgcagaattatatgagtctgagcaacaatggtcaaaagcagctcagatgcttagtggcatcgatttagactctgcaatgagattcgttgatgatacattcagaatttcaaaatgtgtccaaattgctcgtctctatctggaggatgatgatgcagttaatgcagaagcgtttataaataaagcttcctttaaagttaacaacattaagaatgaagtattgaatttgcagtacaaggtttgctatgctaggattttggatttgaagagaaaattcttggaagctgccctgcgttactatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="7155" stop="2067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6855" g_stop="6663" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6662" i_stop="5582" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5581" g_stop="5430" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="347" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5429" i_stop="4487" i_length="943">
            <donor d_prob="0.946" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4486" g_stop="4383" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="451" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4382" i_stop="4282" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4281" g_stop="4221" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="512" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4220" i_stop="2624" i_length="1597">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2623" g_stop="2531" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="605" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2530" i_stop="2434" i_length="97">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2433" g_stop="2367" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="672" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E339652" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6855" e_stop="6663"/>
          <exon e_start="5581" e_stop="5430"/>
          <exon e_start="4486" e_stop="4383"/>
          <exon e_start="4281" e_stop="4221"/>
          <exon e_start="2623" e_stop="2531"/>
          <exon e_start="2433" e_stop="2367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGAGACACTCCAAATTGCGTATTCGAGAAGATTAGCTCAGAGATAAACCCTAAATTGCAATGGAGAGTGCGTTCGCTAGTGCCTCTGCCATCAGCGACCAACGCCAGAAAATCGAACAGTACAAGCA-CATTCTCTCCACCGTTCTCGCATCAAGCGATATCCAACAAGCCAAGCAGTTCATCGATCACAGTACGTTTTTCTCGTTGTTTCATCATAATTTCGCTGTTAATTTTTTGTTCATCTTCTATAATTCTCAGTTGAAATAGATGTTCGAAGATTCATATAGTCAGATTGTAACCGGTTTGAGATTGAGAGGTTGTTTGATTGAGATTGTGTACAATTATGTCGCGCCAGTTATAATCTCATCACAGTTTTGCTGTTAATTTTATGTTCATGTTTTATATTTCTCAGTTGAAACAGATGTTAGAAGATTTATATAGTCATATTCTATCTGGTTTGGGATTGAGCCATTGGTTGGTTGAGAATGTGTTCGGTTATGCAGTGCAGTTACTGCCTCATTATAATTTTGCTGTTAATTTATGTTCATGTTATATATTTCTCAGCTGGATAGATATAGAAGATATATATAGTTAGATTCTAACTGGTTTGAGATTGAGCCGTTATTTTGATTTAAGTTTATTTACGACTATGCAGTTCAGTTACTATCTCATCATAATTTTGCTATTTATGTTGCATTCATGTTTTATGTCTCTCAGCTGAAATAGATATAGAAGATTGATATATAGTCATATTCGTACTAGTTGGGATTGAGCCGCTGTTTGATTGAGATTGTGTGTGATTTATGCATTGCAGCAACTATTTCATCACAATTTTCTGTTAGTTTTATGTTCATGTTGTAGATTTCTCGGTTGAAATAGATATAGATGATTTATATAGTCAGATACTAACTGGTTTGAGATTGAGCCACTGTTTGATTGAGACTGTACGATTATGCAGTGTAGTTACTATCTAATCATAATTTTGCTACTTGTTTTATTTTTCATGTTGTATATGTCTAGCTGAAATAATATGTATAGACAATTTGTGCAGTCAGATTCCAGTTGGTTTGCAATTGAGCCACTGTTTGATTGAGATTGTGTATGACTATGCAGTGCAATTACCATCCAGCTGTCTAATCTTAATTTTTCCTGTAATTTTTATATTCACGTTGTATATTCTCAGCTGAAATCTAAATAGAATATTTATAGTAAGATTCTAACTAATTTGGGGTTGAGCCGCTGTTGTTTGATTGAGTGTGTACATTATGCAGTGCTATCGGATGACGTACCCTTGGTGGTATCTAGACAGCTATTGCAGACATTTGCCCAGGAATTCGATAGATTGGAACCTGATGTTCAAAAGGAAGTAGCACACTATACTCTCAACCAGATA-CAGCCTCGTGTGGTGTCCTTTGAAGAACAAGTATGCTTTGATGTTTCTATTTTGTTTCTTGTCAGATTCTTGACAACTCTTTTGCAGCCCATAGTGAACGATACTTGGACTTACATTAATGCCTCATATATCTCTGAAATTTGGTGCTTCAGAATGTCACTAGCATCAGTTTGTCTTTTATTTTGCTTTGTCTGTTGCATCAGGTGGTGCATATGTATTTGTAAGGGTGTAGCATTTGGATGTTTGTAATTTCATTTCTTAGAACTTCATAAGAGAACAGCAAGAATGCTCTATCAAGAAAAAATACAGAGAGGAACATGGTATGTAGAAATAGAACTATTGAATCAGCATGACAACATCTCTGCCACCTAAAGAGAAGGCCTGTTTTAACGATTGAAATCACGTTATTTTATTAATGATGGATGGGAAGTACTTATCAGAAAAAAGGATGGCAAATTTCTAAATAATTGTCTTTCAGAAAGTAATCTCTTTCTAATTGACCATTAAAGTTAGCATCTTTATTTTTATTAAAACCAGTTAAAAGAATAGGCTAGAAAAGAATGAGTGTAGTACCAGGAACTCAATACACGGGCCACAACCCACATTGGGACCATGGGGTTGTTTATTATGAAGTGTGTTTTTTGAGTTGGTGTTGGATGGAACTATTGCATTGACACCTTTGATTCCTTTTCGATGGAAGTGATTTTAAGAACTGAATTTTTTGAGAGTGGGCTAGCGCCAAAGTCACAGAATTATTTGTTTATCTTCCGATTAAAAAGTTTTTCGGGAAATCATAGTCATCTTAAAATTTGATGTGTCTCGAGTATTTTAGTTTTGAGAAAATGGTACAAATGAAGGTCAAAATTGGAACTCAGCATATTGTCTGTTGTCATCAAGAGATCTCCACATACAGGTTCTTTTGATCTTTTATGTTTTTACTGCCCATTTCTAAAACAAAATCCCATCTTTTCAGGTGTTGATCATTCGGGAAAAACTTGCAGAATTATATGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTTAGTGGCATCGATTTAGACTCTGCAATGAGGTCTGTGTTATACTTCTACTTATCTTTGCTTGCCTGCTGCTGTGTCCCTTAACTTTTCTTTGGAAGCTGAAATTTCTATCGTCGCACTGCTTCTTCTGCAGATTCGTTGATGATACATTCAGAATTTCAAAATGTGTCCAAATTGCTCGTCTCTATCTGGAGGTTGGATTTTTCTTTTTCTTTTCTTTCTATACTTCTAATGCCAAGTAAACATCTCCAAGTTAACGATCCTTGTTTGGTTTGGTAGTGCACCTTTCAACTTGCCTGACAATTGATCTGCTCTAAAGAGGAAGAGGCGAAATCAATTCATCAATATATGTGCTGGAGTGACCTATCAATTTTTTTAGTTTGGTTAACTAATAGTTAATATTTATAAGAAAACAATTAATAACTTGCTAGTTTGAGCTATAGGGCTTTGTTGTAGTGCAAGTGTATTGATTACGGGAATATTATATAGAAAGCTTTCTTAAAATCTAGAATGAAGTTTTGATTCTGTACATGCCATATCATGAATTAGTAGCTGCTTCCAATTAAAAAAAATGCTAATTGTGTTGAACTTTCCATTTTTGTAATAGTTATGGAATCTCCATGAGTAAACTATAGTCCACACAACCATATCTCCCAATTGAAAAAGATAATTACTACATGAGACCACACATTAGATAAAGGAAAAATCTTTCTTGTTTCTTTTTTATTTCTATATTATATAGGTATGTACAACTTTATCATCAATTTCCTTTACCGATCAAAAGTAGTTTCTAGTAAGTTTGCCCAAACTGCTTCAAACACCTAAGGAACCACCAAAAGTTTTTTCTGCAAAAAAGAGTTTTTTCTTAGCTGCACCCAAGGGTGTAGCCTAGTGGTCAATGAAGAGGGTTGAGAACTGTGAGGCCTTAGGTTCAATTCCCAGCGGAGACAAAAAAGCTAGGTGATTCTTTTCCATTTTGTCTAAGCCTTGGTGGATAGAGTTACCAGTACCTATGTCAGTTGACCTGGAAACCACGATTTAAAAAGGAGTTTTCCCTAACTCCTTCCTTCGCGAGGAGGTCTACAACCCTGTTTACTCTCGATAACTTGAATTTTCTGCATAAGAGCTAGCAATTCAGTTAAGAGTATTTGTGGTGATAGATATTCTCTCCAATCACCATTTATTTTTCGAAGCACACCACCCTGCCGATTCCCCCTTGGCTTGGGTTTCCTAATGAGGATCCGTCAATGTAAAGTTTGTTGGAAGTAGAAACCTTTTCCGTGAGGTTCTCAATTAATACTGATAGTGTTCTTGGAAAAAAAAGAGACAGTAATTGGTGTTCCCCGGTTAGAAATTTGGTCTAGTTCTGAAGCGTTAAATACTTTCAGGAACGTTAGTAGGAAACAAATGAGTGTGCACTGATTTTTGTTAAGAAAAAGGTAACAAATGAATATGTAGTATGTGAGCTCCTTTCTATGTGGCATTTATTCTGCAAGTTGTACCGATGTTGTCTTTCTTCTTGATGAGTAAACCTTTTTCGGTGCTAATGTGACTTGTTAACTAGTGTGCTATGTACATTCTAAGTATCTTGGTTTCCTTTCAATTGTATTGTTCTGCTTACTATCAAAAGGAAAATTAGAGTTGTAGATTTGGTTCCTGTACTGCTACTATGCACCCTGCTATTGTCTGCTGTTTATATGCATTGATCTGAAAAAGTTCAGTCTACTTCCATTATTTTGGTTCTCTTTGGCATTCTAAGTTTCTAACAGTGTCCAATTCCTTCTTTGGCAGGATGATGATGCAGTTAATGCAGAAGCGTTTATAAATAAAGCTTCCTTTAAAGTTAACAACATTAAGAATGAAGTATTGAATTTGCAGTACAAGGTTGTTATCATATGATCTAGGGCATTTTTTATTTTTGAGCATGTCACCGTCACTGGCTAATATGTCAACTCAACTATTTCCTGAATGATTATTTCAGGTTTGCTATGCTAGGATTTTGGATTTGAAGAGAAAATTCTTGGAAGCTGCCTTGCGTTACTATGACA</genome_strand>
        <mrna_strand>TCGACGAGACACTCCAAATTGCGTATTCGAGAAGATTAGCTCAGAGATAAACCCTAAATTGCAATGGAGAGTGCGTTCGCTAGTGCCTCTGCCATCAGAGACCAACGCCAGAAAATCGAACAGTACAAGCACCATTCTCTCCACCGTTCTCGCATCAAGCGATATCCAACAAGCCAAGCAGTTCATCGATCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCGGATGACGTACCCTTGGTGGTATCTAGACAGCTATTGCAGACATTTGCCCAGGAATTCGATAGATTGGAACCTGATGTTCAAAAGGAAGTAGCACACTATACTCTCAACCAGATACCAGCCTCGTGTGGTGTCCTTTGAAGAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATCATTCGGGAAAAACTTGCAGAATTATATGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTTAGTGGCATCGATTTAGACTCTGCAATGAG.....................................................................................................ATTCGTTGATGATACATTCAGAATTTCAAAATGTGTCCAAATTGCTCGTCTCTATCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGCAGTTAATGCAGAAGCGTTTATAAATAAAGCTTCCTTTAAAGTTAACAACATTAAGAATGAAGTATTGAATTTGCAGTACAAG.................................................................................................GTTTGCTATGCTAGGATTTTGGATTTGAAGAGAAAATTCTTGGAAGCTGCCCTGCGTTACTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343732" ref_strand="+" ref_description="SGN-E343732 [cTOF-20-F6]">
      <seq>gccccatagatatgatggaagaggatgctttttctagccttccaatccgtttgaaaataagtttgacagtctgggactttgtgcttccagctaccccttctgtccctgctgtgattggtatatctgatactgttattgaagatcgatttggggttgagcacggaagtaatgaatggtttgagctgttagatcagcatttcaaatggctacttcagtatcgaatcagtccatacttctgcaggtggggcaacggcatgagagttttgacatacacctcaccatggccagctgaccatccaaaatcagacgagtatttctctgaccctcgtcttgcggcatatgctgtacctaatggtccgatagtcccctgcggcgatattgcgaaggactacttacgaagggaggtagagatattaagaacaaaaaaacattggaggaaagcatacttctatctgtgggatgagcctcttaacattgaacaatatacttccctccgccgcatggccagtgatattcatgcctatgcacctgatgctcgtattctgacaacttattattgcggaccaagtgatgcacctcttgctacaaataactttgaggcttttctgaaagttcctgcgttcctacgtcctcatactcagatatattgcacaagcgaatgggttattggtaacagaanaggatctggcgaaggatattatcgcggagatacaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="19242" stop="27229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19542" g_stop="19660" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19661" i_stop="20138" i_length="478">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20139" g_stop="20307" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="288" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20308" i_stop="20497" i_length="190">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20498" g_stop="20579" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="370" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20580" i_stop="20676" i_length="97">
            <donor d_prob="0.120" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20677" g_stop="20770" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="464" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21453" g_stop="21549" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="561" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22603" g_stop="22696" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="655" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26868" g_stop="26929" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="718" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E343732" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19542" e_stop="19660"/>
          <exon e_start="20139" e_stop="20307"/>
          <exon e_start="20498" e_stop="20579"/>
          <exon e_start="20677" e_stop="20770"/>
          <exon e_start="21453" e_stop="21549"/>
          <exon e_start="22603" e_stop="22696"/>
          <exon e_start="26868" e_stop="26929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCCATAGATATGATGGAAGAGGATGCTTTTTCTAGCCTTTCAATCCGTTTGAAAATAAGTTTGACAGTCTGGGACTTTGTGCTTCCAGCTACCCCTTCTGTCCCTGCTGTGATTGGTGTATCCTTTTTTGTACACTGGTGTTAGATATTATATCAAGCCATTAAACTGGTTGTGGAGAATTGCTCCTGGTCACTGATTGCTATCAATTGAATTCACGCGATTTTTGATTTGTCAGGCTTGATTGCCAATTAATTTGTAATCTATTGCATCATGTTGACTTAACATTTTGCCTGCGTACAATTGATTTGACCGTTCCCTTTTCCTAATTGACGAGCTTCTTCTTTGGGATGTCCTCCATTTCTGTTTACTGATGTATTTTTACGAGTCTATTCACGTTTTGTGTGGTGGTAGTTCTTTGTCCTTCTTTTCATTCATTCATGTAAACTAGAATATCATAGCAGACACCTGGAAACCGCAAATATTCTGCCATTCTATCCTTTACTCTCTCTTTACTTACTAAAGACTGCTGGTACTAGTCTCTGTGATAAAGCAACTGAATTTTTGAATGAGGATGGAGTCCTTTAATTCTGTCTAGATATCTGATACTGTTATTGAAGATCGATTTGGGGTTGAGCACGGAAGTAATGAATGGTTTGAGCTGTTAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAGGTAATATATGATGCTTATTGCTTAGTATACCTGTACTTGTGAAACTCTCGTTCTTCTAGATCTACTTGAAGTCTTGAATAGATAAGTTTGTAAAGGTGCTGAATGGAGACTCTAGTTCTATTCTCCTACTGGCTTTTACTCCAAGTGTATCTACATTAAACTAAAATTTCTGTCTCTAATGCTGTTCTAGCTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTGGTATGATGGACAATTTTTTGCCAAAAGTTCTAGGATAGTAGGATGTATGTTGTGTACAAGTTGATCAGTTTACTTTTGTTCCTTAATTTGGCATTAGCGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAGGTAAGTGAGCAGATTGAATTGCTATTTTTTTATAACATATACGACAAACTTTTTATTGTTCTAGTGACACTTGCAGTTCAAAGTCAAGTATCCACCTGTTTGTAGCTGGGACGTGGTCTTTACTCTTTCTTCTTTCGTAGATGAGAAACATCATTTTCCTGAAATATGTTGTTTGTCGTTACAACACCAGGCAACAACTATTCCTCAATAACAAACTTTGTATTCATACATATACACACACACACACACACACACACACACATACACATGACGTGTATATAAATATCCTATTTTATGCTTTAAACCGGTAAATTCTTTTATCCATACAAAAAAGGGGAAACATACGGTGTACAGACTTATAGTGCTTTAACTGTCTTTTAAAAAAGGTAAGACAATCATGGGATGGACTAATTTTTTTTTCTTCCATTCGAAAAGGCTATTTGTGTAAGACCCAATGTGATCCGACCCTTCCCCATAGCCTGTGCATGGTGGGAGCTTAGTGCACCGGGCTAACTTACTTTCCCTATTCAAATACTAACACTGTACATTGTTTTATTCCTTTCCTTTACCCCCTTGAATATAATTTTACTTTTTTCACTCACTTTTCCTACTTCGGGCAATTGATGGTAACTACCTATCTTTATGACTTTGTTCTAAATTAGTTTTGTTTGCATTTGTTCAGCCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCGGTGAGCATCAGATTTCTCTTCATCACATGTATTTATTTCAATGAGATGTTGTGCCTGATAGCTATATGTCTATTTCTGTATCTTCTGTTGCTCTTTGGATTGAAGAAATCTATCTACTAACTAGAATTGTGCTATATCTGTTTGGATGATGGACCTACTGTGCTATATTTCATAAGCCAAATATGCGAGGACAGATTGAGTTGTGGAGTTGAAACAAAAAGCACATTTTTTGCTGCCAACCCACTCTGAATCATATGATAAGCTGCTGATTGGAGAGTATTTGCTGTCACATTTAGTGTTGAAACTCCTGCTTCTTATGGACACTTCAAATAGAAACGGAAGAACAGTAGAAATTCTTCATCTAGGGATTCCTGAGTCTCGTTGGTGCCTCTGTTTATGGCCAGTTCTTGCAGAAAATTCTGTATCTAACACACTTATTACTTGAGTGCGGCGTTATTCTTACTCTGTCTGAAATAATTTTTTAGAGGGATATTGCTTTGTCTCATATTATTCTGGATGTCAATGATTTCTTGGAACATATGCAGCTGTTGTGCTAATGTAACTGGTGTGTGCTATTTGTTGAGACACATTTTAAGGTGAAAATATTAGATATGTCCCAGTTATGCATGGTTTTGCAATTCCATCTTGGTGCATTTATCCTCTACACTTACATTTGGAACACTTAATTGATTTCTTGATGACTTGGAAACTGAGAGGGTTACCATGCCTTGAAGTAATTGACATCAACTTTCTGGCGATTCTGTTTGCTTTATCTGAAATTCAAAGGTAAAATTTGAGTGCTGTCACTGACAGAAGCATCAAATGAAGCTTCATCTGAAACAATCTCACATGATTTTTGATCTTTTTTTTTTTTTGAGAAAGCACATGATTTTTGATCTTTTTTTTTGAGAAAGCACATGATTTTTGATTTTTGTGATTGACAAACTAGATATTTATTTGTCTCTCTTTGGCCTAGATCTGTCTGAATATTCTTTGGTAATTGTTATTTGCGTGTATAACTTTCTTCACATGGTTACTGTTCTTATTTTATAGGACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAGGTAGTGATTTAGTTTCTTGAGAAATCCTTTGTTTTATTTCCAATGTACAAGTATGAGAACGACCAAGGAACTATTACATTAAAAAATGAATGTTGTGATTAGTTTTTACCTACCTTATAAATAAAAGAATGTGGTGATTAGTAAAAGAACCGAGAAGTTTATTTTGTTAGTATTGTAGCTCAGATGGATGGAATACAAACACTGCCCTTTGTGAGAACTCACTGAATAAATTGGGTATTAATTCAGTTTTGGATGAGATAATCTGGAAGTCTCATTATCTGAGCCAAGTTCAGTGATTTGAAGTAGTTGAATTTGCTATCTTTTGATTTGGTATAGTGAAAGCATCACGTTCTCATGGATTAGCTTATGTCTTAGTTAACAAGTTTGAGCCCTGTGCCAAGTGAACTAGGTCCAGTATATCAGTGGAGAAGGGTAGGAAATTCTGCCCCATTATCCCCGAGTTTTGGTTGGAAATTCATTTATACTGAAACATCATAGTTTACTACTGCATCTCTTCAATTTTAGAGACCTGCTGATGTATTTCTTTCCATATATCATACCCACTAGTTTCGGACATGTGCCCAAGCAAGCACTACATATGGTATAAGTCAATATTAGACCACATTATAACGAGTATTACAAACTGTTCGGCAGGAAAATACAAGTTGAAATAGATGAGCAATCAACCTGTCCAGGTGACTTCTTCTTTGGATGCCAAATGATTTGATATTCTCTGAACCTGCAAAATTTGAACAACTAAGGACGTGTTTGGTACAAATGAAAATGTTTTCCATGAAAAGTGTTTTTTTGGAAAATAAGTGGGTTTCTTACTTATTTCGTTGTGTTTGGTACATAAGCAAAAAAATATTATGCTGAAAATATTTGTAGATAATCTTGTAATAGGGGTGAGGCTAAGGGGGTGGTGGGGATGGGGCTAAGGGAGTCCGGTGAAGATGAGGTGTGTTAGGAGGGTGGGGAGGACACAATAAATGTGGAATGTCACTCGTGGAATTTATTTTCCCTACTTTCACTAAGGAAGTTATTTTCCTCATTTTTAAGGAACTTGTTTTCCTAAAGAAAATATCCTCCTAAAACTTTGACCAACCGATCATGAGAAATGTGGAGTGTCACTTGTGGAATTTATTTTCCCTACTTTCACTAGGGAGGTTATTAACCTCATTTTTAAGGAACTTATTTTTCTAAAGAAAATGTTCTCCAAAAACTTTGACCAACCGATCATGAGGAAATTAGTAAACACTTTCTTGGAAATATTTTCCTCCATACCTAGTGCACCCTAAATTAAGTTTGGTATTAAGAATGTTTACTGAGTTACATCTTTGTGCTATAAGGTGCAGACATGTAATACATTTGTATGTTATCCAATACTTCCTTATAGAGATGATGTTCTTGGCGTATGTCTCCTATGTCAATACAGACAACTAATGAAGCAGGCAATGTAGCAACTAATGAATATAATACAAGATTGAGATAGTATTACTTATTCATTAATGAATACCTATTCGTCAACGAATATTAGCTACCAAAATACCCTCAACTATATATTGTTATTGGATTTACCTCGGAGGTACTACCGGATAAATCATAATGGCAAGCAAAGAAGAGCTATGAAACAATGCATACCTATCAGCAAGTTGAAGAGAGATGCAATAAATGAGGTAATTCAAAGAAGTAACAACTAATGAATATAACACAAGATTGAGATTGTATTACCTCTTTGTCAATGAATATTAGCTGCCAACGGGCACCCTCCCCATTAGCATTTCTGTACTCCCTTTATTCAACTTCTTCGAATTACTAAAACCTTAGTCACCCATTCTGTTTTATTACCAATCTAGTGCTAACCGGTAATTGAATTACAACAAAGAGTTTGTAATATAGGAAAACCACAAAGACATAAGATACTATATGTTCTTTCATAGTAATTATTTTTTGTAGCAATTATTTAACATTTAATAGATTTCATCAAATCACATGCGAAGTCTTAATAATTAAGTAACATATAAATTATCCAAAAATGTGTAATGTTTTGCATGTTGGAAAACATATCATGTGTAATCCCACAAGTGGGGTTTGGGGAGGGTGGCGTACGCGACCTTATCCTTATCTTGTGAAGGTAGAAATATTGTTTTCGATATACCCTCAACTCGAGGAATACATCAAAAACAAGTATGAAAAGGATATATAGTAGTGGAGAAGTCATGCAGAAAATAATAGGGAAGAAAAACAGTAGCAATAACCAACTACACGACAATCAAAGCAAAGGAAACAAAAATAATGATAAAATCATAGAATAAGACAGTAGAAGTGTAATAATACAAATACGGAGAAGGAAAACTAGACAATGCTGGACCACCCACTAACCTTCTTCCCTGATCCTCGATTTTCATATTCTCTTATCTAGGTTTATGTCCTTGGCATGTTGCAGGTGTGTCATCTCTCGCTTATTCACCTCTTTGGCCTACTTCTACCTCTCCTCATCCCGCCGAAGTCAATCTCTCGCATATCCTCACTAGAGCATCTGTATCTCTCCTCTTCATGTGCTCAAACCATCTCAGTTTGCCTCCCTCATCTTTTCTACCATAGAGGCCACTCCAACCTTGTCCAGAATATCTTCATTCCTAATCTCTTATAGTTCTTCTGGAAATGTGTAAAGTTTTGCAACCTGGAGAGCCCATAAATTTATAGAAGGAATTCTTTCCATGCAACAATTTATCATCTATTACCGGTATAAATTAGCATTTAATATGATGTCATTAAATAAGAACCCTTTTGATAATCGTTCATATTGATACTGGGGTTTTGTTTCCTTAAACGTGTAGTTTTTAATTTTTTTAGGATAAGGGGTAGTTTAGTCGATCTACTTTTCAAGGGTATTTCCATAAACCAACTTCCCTCTTTTAGAATATTATATGGATTTTTTTTGGACAAAAATTTTGTTTTCTTTTTCTGTAGTTCTTTTCCTCTCATGCTTTAGTTGTTATGTTGCCGTTACTTGAATTCTGATCCAGTCGATGTTAAATGAAATTACTTTTTAAACAATGTTGGTTGCTCACTCATACTTTATGAGAACCATTGACTGGAATATTAAGCCAACTATTCATGTTTGCCCTGATTCACGATTAGAGGTTGGAGACAAAGCCTAAAAGAATTCAATTAATGAGTTCTTTTATACTACTTCCTTTATCTAAAAGAATGACAAAGGTTGGCGAGAATTCTGATTTCGATTTAATTGTTTTTAAATGACATTTATATATCTACGAATAACATAGAAGTACCATGAATCAACTTTCTATTTAAAATATTTACAATTGTTTGAATAAATCCCCAATAAACTAGTTGTGCATACTTCCGTTCTCCTTCCTTTTCTGTTTTTTGATCACCACTTGTTGCATCTGGAGACCTTGTCAGTATTCTCTTCCTTATTGATCACTTACTAGCAGGGGCAGATCCATATGGAATCTTGGTTCAGTGGTGACAAGTTGCTCCGTTTGAGGTTGAGGTCAGGGGTTCGATTCCCACTGGCCTCTGTTTTCATTCCTTTGTAATTAATTAATCAATAAGGGCTTCATTTGCGTGCCCTTGCATTTACCAAATATCCAGCCCCTTTTTTCTTGTAATAAATAGGTTTCAAATCCCAGATTTCTTTTTTGAATTGTATGAATAAAAGTTTGACCTTCTTTTCTCCTGTTTTCCTTTTCTTTACCGGTTTTAACTTGCACAGGTTTTGTTTCTTCCTTTTTTTCTTTCATGTTCACTATCTTTGGTTTCATCAACGAAGTACATAAAAAATGATGTACTAATAAGATTTATGATGAGCAGGATGCGGGGAGACTCGCATATTCTCTTCTTATATTATTTGAATGGTTATTTAGTTTGCTATATAGACGTAAGATATTTAAAAATGTAAGTAATGATGCTACTATTGACGTTTGAAGTATGAAAACTCGTCGCGGACAACTATAAATGAATGATTTTCCCTTTGTGGATATAATATTAACTATACTTTGCTCTTTAACTTGTTGTCACCGTGAAATTTTATATTATTTAAATAAAAGTGTCCATCTTAAGAGCAATGGTGCACCTATGCTCTTAAAATCCGGGATATGCCTCTGCTTACTAGGCTTTTTAACGTATTTCCTTGTCTATTCAGCGAATGGGTTATTGGTAACAG-AGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAG</genome_strand>
        <mrna_strand>GCCCCATAGATATGATGGAAGAGGATGCTTTTTCTAGCCTTCCAATCCGTTTGAAAATAAGTTTGACAGTCTGGGACTTTGTGCTTCCAGCTACCCCTTCTGTCCCTGCTGTGATTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGATACTGTTATTGAAGATCGATTTGGGGTTGAGCACGGAAGTAATGAATGGTTTGAGCTGTTAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAG..............................................................................................................................................................................................CTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTG.................................................................................................CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGGGTTATTGGTAACAGAANAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273501" ref_strand="+" ref_description="SGN-E273501 [cLEN-3-L16]">
      <seq>tagatcagcatttcaaatggctacttcagtatcgaatcagtccatacttctgcaggtggggcaacggcatgagagttttgacatacacctcaccatggccagctgaccatccaaaatcagacgagtatttctctgaccctcgtcttgcggcatatgctgtacctaatggtccgatagtcccctgcggcgatattgcgaaggactacttacgaagggaggtagagatattaagaacaaaaaaacattggaggaaagcatacttctatctgtgggatgagcctcttaacattgaacaatatacttccctccgccgcatggccagtgatattcatgcctatgcacctgatgctcgtattctgacaacttattattgcggaccaagtgatgcacctcttgctacaaataactttgaggcttttctgaaagttcctgcgttcctacgtcctcatactcagatatattgcacaagcgaatgggttaaaattggtaacagagaggatctggcgaaggatattatcgcggagatacaaacagaaaacggagaggagtggtggacatatgtatgcttgggaccaggtgatcctcatcccaactggcacttggggatgcgaggcactcaacaccgtgctgtgatgtggcgtgtgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="19906" stop="28542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20206" g_stop="20307" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20308" i_stop="20497" i_length="190">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20498" g_stop="20579" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="184" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20580" i_stop="20676" i_length="97">
            <donor d_prob="0.120" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20677" g_stop="20770" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="278" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21453" g_stop="21549" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="375" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22603" g_stop="22696" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="469" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26868" g_stop="26940" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="545" r_length="76" r_score="0.918"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26941" i_stop="28138" i_length="1198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28139" g_stop="28242" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="649" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E273501" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20206" e_stop="20307"/>
          <exon e_start="20498" e_stop="20579"/>
          <exon e_start="20677" e_stop="20770"/>
          <exon e_start="21453" e_stop="21549"/>
          <exon e_start="22603" e_stop="22696"/>
          <exon e_start="26868" e_stop="26940"/>
          <exon e_start="28139" e_stop="28242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAGGTAATATATGATGCTTATTGCTTAGTATACCTGTACTTGTGAAACTCTCGTTCTTCTAGATCTACTTGAAGTCTTGAATAGATAAGTTTGTAAAGGTGCTGAATGGAGACTCTAGTTCTATTCTCCTACTGGCTTTTACTCCAAGTGTATCTACATTAAACTAAAATTTCTGTCTCTAATGCTGTTCTAGCTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTGGTATGATGGACAATTTTTTGCCAAAAGTTCTAGGATAGTAGGATGTATGTTGTGTACAAGTTGATCAGTTTACTTTTGTTCCTTAATTTGGCATTAGCGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAGGTAAGTGAGCAGATTGAATTGCTATTTTTTTATAACATATACGACAAACTTTTTATTGTTCTAGTGACACTTGCAGTTCAAAGTCAAGTATCCACCTGTTTGTAGCTGGGACGTGGTCTTTACTCTTTCTTCTTTCGTAGATGAGAAACATCATTTTCCTGAAATATGTTGTTTGTCGTTACAACACCAGGCAACAACTATTCCTCAATAACAAACTTTGTATTCATACATATACACACACACACACACACACACACACACATACACATGACGTGTATATAAATATCCTATTTTATGCTTTAAACCGGTAAATTCTTTTATCCATACAAAAAAGGGGAAACATACGGTGTACAGACTTATAGTGCTTTAACTGTCTTTTAAAAAAGGTAAGACAATCATGGGATGGACTAATTTTTTTTTCTTCCATTCGAAAAGGCTATTTGTGTAAGACCCAATGTGATCCGACCCTTCCCCATAGCCTGTGCATGGTGGGAGCTTAGTGCACCGGGCTAACTTACTTTCCCTATTCAAATACTAACACTGTACATTGTTTTATTCCTTTCCTTTACCCCCTTGAATATAATTTTACTTTTTTCACTCACTTTTCCTACTTCGGGCAATTGATGGTAACTACCTATCTTTATGACTTTGTTCTAAATTAGTTTTGTTTGCATTTGTTCAGCCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCGGTGAGCATCAGATTTCTCTTCATCACATGTATTTATTTCAATGAGATGTTGTGCCTGATAGCTATATGTCTATTTCTGTATCTTCTGTTGCTCTTTGGATTGAAGAAATCTATCTACTAACTAGAATTGTGCTATATCTGTTTGGATGATGGACCTACTGTGCTATATTTCATAAGCCAAATATGCGAGGACAGATTGAGTTGTGGAGTTGAAACAAAAAGCACATTTTTTGCTGCCAACCCACTCTGAATCATATGATAAGCTGCTGATTGGAGAGTATTTGCTGTCACATTTAGTGTTGAAACTCCTGCTTCTTATGGACACTTCAAATAGAAACGGAAGAACAGTAGAAATTCTTCATCTAGGGATTCCTGAGTCTCGTTGGTGCCTCTGTTTATGGCCAGTTCTTGCAGAAAATTCTGTATCTAACACACTTATTACTTGAGTGCGGCGTTATTCTTACTCTGTCTGAAATAATTTTTTAGAGGGATATTGCTTTGTCTCATATTATTCTGGATGTCAATGATTTCTTGGAACATATGCAGCTGTTGTGCTAATGTAACTGGTGTGTGCTATTTGTTGAGACACATTTTAAGGTGAAAATATTAGATATGTCCCAGTTATGCATGGTTTTGCAATTCCATCTTGGTGCATTTATCCTCTACACTTACATTTGGAACACTTAATTGATTTCTTGATGACTTGGAAACTGAGAGGGTTACCATGCCTTGAAGTAATTGACATCAACTTTCTGGCGATTCTGTTTGCTTTATCTGAAATTCAAAGGTAAAATTTGAGTGCTGTCACTGACAGAAGCATCAAATGAAGCTTCATCTGAAACAATCTCACATGATTTTTGATCTTTTTTTTTTTTTGAGAAAGCACATGATTTTTGATCTTTTTTTTTGAGAAAGCACATGATTTTTGATTTTTGTGATTGACAAACTAGATATTTATTTGTCTCTCTTTGGCCTAGATCTGTCTGAATATTCTTTGGTAATTGTTATTTGCGTGTATAACTTTCTTCACATGGTTACTGTTCTTATTTTATAGGACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAGGTAGTGATTTAGTTTCTTGAGAAATCCTTTGTTTTATTTCCAATGTACAAGTATGAGAACGACCAAGGAACTATTACATTAAAAAATGAATGTTGTGATTAGTTTTTACCTACCTTATAAATAAAAGAATGTGGTGATTAGTAAAAGAACCGAGAAGTTTATTTTGTTAGTATTGTAGCTCAGATGGATGGAATACAAACACTGCCCTTTGTGAGAACTCACTGAATAAATTGGGTATTAATTCAGTTTTGGATGAGATAATCTGGAAGTCTCATTATCTGAGCCAAGTTCAGTGATTTGAAGTAGTTGAATTTGCTATCTTTTGATTTGGTATAGTGAAAGCATCACGTTCTCATGGATTAGCTTATGTCTTAGTTAACAAGTTTGAGCCCTGTGCCAAGTGAACTAGGTCCAGTATATCAGTGGAGAAGGGTAGGAAATTCTGCCCCATTATCCCCGAGTTTTGGTTGGAAATTCATTTATACTGAAACATCATAGTTTACTACTGCATCTCTTCAATTTTAGAGACCTGCTGATGTATTTCTTTCCATATATCATACCCACTAGTTTCGGACATGTGCCCAAGCAAGCACTACATATGGTATAAGTCAATATTAGACCACATTATAACGAGTATTACAAACTGTTCGGCAGGAAAATACAAGTTGAAATAGATGAGCAATCAACCTGTCCAGGTGACTTCTTCTTTGGATGCCAAATGATTTGATATTCTCTGAACCTGCAAAATTTGAACAACTAAGGACGTGTTTGGTACAAATGAAAATGTTTTCCATGAAAAGTGTTTTTTTGGAAAATAAGTGGGTTTCTTACTTATTTCGTTGTGTTTGGTACATAAGCAAAAAAATATTATGCTGAAAATATTTGTAGATAATCTTGTAATAGGGGTGAGGCTAAGGGGGTGGTGGGGATGGGGCTAAGGGAGTCCGGTGAAGATGAGGTGTGTTAGGAGGGTGGGGAGGACACAATAAATGTGGAATGTCACTCGTGGAATTTATTTTCCCTACTTTCACTAAGGAAGTTATTTTCCTCATTTTTAAGGAACTTGTTTTCCTAAAGAAAATATCCTCCTAAAACTTTGACCAACCGATCATGAGAAATGTGGAGTGTCACTTGTGGAATTTATTTTCCCTACTTTCACTAGGGAGGTTATTAACCTCATTTTTAAGGAACTTATTTTTCTAAAGAAAATGTTCTCCAAAAACTTTGACCAACCGATCATGAGGAAATTAGTAAACACTTTCTTGGAAATATTTTCCTCCATACCTAGTGCACCCTAAATTAAGTTTGGTATTAAGAATGTTTACTGAGTTACATCTTTGTGCTATAAGGTGCAGACATGTAATACATTTGTATGTTATCCAATACTTCCTTATAGAGATGATGTTCTTGGCGTATGTCTCCTATGTCAATACAGACAACTAATGAAGCAGGCAATGTAGCAACTAATGAATATAATACAAGATTGAGATAGTATTACTTATTCATTAATGAATACCTATTCGTCAACGAATATTAGCTACCAAAATACCCTCAACTATATATTGTTATTGGATTTACCTCGGAGGTACTACCGGATAAATCATAATGGCAAGCAAAGAAGAGCTATGAAACAATGCATACCTATCAGCAAGTTGAAGAGAGATGCAATAAATGAGGTAATTCAAAGAAGTAACAACTAATGAATATAACACAAGATTGAGATTGTATTACCTCTTTGTCAATGAATATTAGCTGCCAACGGGCACCCTCCCCATTAGCATTTCTGTACTCCCTTTATTCAACTTCTTCGAATTACTAAAACCTTAGTCACCCATTCTGTTTTATTACCAATCTAGTGCTAACCGGTAATTGAATTACAACAAAGAGTTTGTAATATAGGAAAACCACAAAGACATAAGATACTATATGTTCTTTCATAGTAATTATTTTTTGTAGCAATTATTTAACATTTAATAGATTTCATCAAATCACATGCGAAGTCTTAATAATTAAGTAACATATAAATTATCCAAAAATGTGTAATGTTTTGCATGTTGGAAAACATATCATGTGTAATCCCACAAGTGGGGTTTGGGGAGGGTGGCGTACGCGACCTTATCCTTATCTTGTGAAGGTAGAAATATTGTTTTCGATATACCCTCAACTCGAGGAATACATCAAAAACAAGTATGAAAAGGATATATAGTAGTGGAGAAGTCATGCAGAAAATAATAGGGAAGAAAAACAGTAGCAATAACCAACTACACGACAATCAAAGCAAAGGAAACAAAAATAATGATAAAATCATAGAATAAGACAGTAGAAGTGTAATAATACAAATACGGAGAAGGAAAACTAGACAATGCTGGACCACCCACTAACCTTCTTCCCTGATCCTCGATTTTCATATTCTCTTATCTAGGTTTATGTCCTTGGCATGTTGCAGGTGTGTCATCTCTCGCTTATTCACCTCTTTGGCCTACTTCTACCTCTCCTCATCCCGCCGAAGTCAATCTCTCGCATATCCTCACTAGAGCATCTGTATCTCTCCTCTTCATGTGCTCAAACCATCTCAGTTTGCCTCCCTCATCTTTTCTACCATAGAGGCCACTCCAACCTTGTCCAGAATATCTTCATTCCTAATCTCTTATAGTTCTTCTGGAAATGTGTAAAGTTTTGCAACCTGGAGAGCCCATAAATTTATAGAAGGAATTCTTTCCATGCAACAATTTATCATCTATTACCGGTATAAATTAGCATTTAATATGATGTCATTAAATAAGAACCCTTTTGATAATCGTTCATATTGATACTGGGGTTTTGTTTCCTTAAACGTGTAGTTTTTAATTTTTTTAGGATAAGGGGTAGTTTAGTCGATCTACTTTTCAAGGGTATTTCCATAAACCAACTTCCCTCTTTTAGAATATTATATGGATTTTTTTTGGACAAAAATTTTGTTTTCTTTTTCTGTAGTTCTTTTCCTCTCATGCTTTAGTTGTTATGTTGCCGTTACTTGAATTCTGATCCAGTCGATGTTAAATGAAATTACTTTTTAAACAATGTTGGTTGCTCACTCATACTTTATGAGAACCATTGACTGGAATATTAAGCCAACTATTCATGTTTGCCCTGATTCACGATTAGAGGTTGGAGACAAAGCCTAAAAGAATTCAATTAATGAGTTCTTTTATACTACTTCCTTTATCTAAAAGAATGACAAAGGTTGGCGAGAATTCTGATTTCGATTTAATTGTTTTTAAATGACATTTATATATCTACGAATAACATAGAAGTACCATGAATCAACTTTCTATTTAAAATATTTACAATTGTTTGAATAAATCCCCAATAAACTAGTTGTGCATACTTCCGTTCTCCTTCCTTTTCTGTTTTTTGATCACCACTTGTTGCATCTGGAGACCTTGTCAGTATTCTCTTCCTTATTGATCACTTACTAGCAGGGGCAGATCCATATGGAATCTTGGTTCAGTGGTGACAAGTTGCTCCGTTTGAGGTTGAGGTCAGGGGTTCGATTCCCACTGGCCTCTGTTTTCATTCCTTTGTAATTAATTAATCAATAAGGGCTTCATTTGCGTGCCCTTGCATTTACCAAATATCCAGCCCCTTTTTTCTTGTAATAAATAGGTTTCAAATCCCAGATTTCTTTTTTGAATTGTATGAATAAAAGTTTGACCTTCTTTTCTCCTGTTTTCCTTTTCTTTACCGGTTTTAACTTGCACAGGTTTTGTTTCTTCCTTTTTTTCTTTCATGTTCACTATCTTTGGTTTCATCAACGAAGTACATAAAAAATGATGTACTAATAAGATTTATGATGAGCAGGATGCGGGGAGACTCGCATATTCTCTTCTTATATTATTTGAATGGTTATTTAGTTTGCTATATAGACGTAAGATATTTAAAAATGTAAGTAATGATGCTACTATTGACGTTTGAAGTATGAAAACTCGTCGCGGACAACTATAAATGAATGATTTTCCCTTTGTGGATATAATATTAACTATACTTTGCTCTTTAACTTGTTGTCACCGTGAAATTTTATATTATTTAAATAAAAGTGTCCATCTTAAGAGCAATGGTGCACCTATGCTCTTAAAATCCGGGATATGCCTCTGCTTACTAGGCTTTTTAACGTATTTCCTTGTCTATTCAGCGAATGGGTT---ATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAGGTAATAAAAATGTATAAACTGTTTTTTAATGGATTATTTTATGGAGTAAACAGTGGATCACTATAATTACTTTTAAACTCTCGTTAAATGAGGAAAGGAAAACGATGCAGAGAAGTGTCATACAGATTAATGCGATAAGATAAGTTATTGCCTGGTTCCTTGCTGATATCACATTCATGTTTTCTCCCTTTGCTTTTTTCCTCTAATGCAATAAGATAAGTTATTGCCTGCAGACACTGCTGACAATTAACTCTTATTTTGTGGACTAGAGCTTAGCATCAGAGATTCTAGGATAGCCAATGGTTTTAATACATGATTCCATATGCTATATATAGGATATTCTATTTTAGTTACAAGATCAGATGGCACCTTGTTTATCATGGATTTCTTCACTGGTGGATAAGAGGACTCTATCTTAGGTCTCACATCTTTTTATGGATGAATATTCCTTTCTTCGTAAAGAATTTATGCGTGATTTTTATTGGAAAAAATGTATGCTTGATTGGGAAGAAAAAACGAAGTTAAGGAATCTATGCAAATTGGGACCCTGTCAAGTTCTAACTTATGTGCATGATTTATCCACAAATGGGTTTAGCAAAGGCCACCTTCAAATGATTAACATTCTACTCATCTGTCTGTATGGAAGTAGTTGATCACTGCTAGTGTATATGACATTGATTCATAAGGACATTAGAGAGACATGAGATAGTTTTAGCATTTTACTTTTTCTCTTTCAATGAAATTTGGCATCTTATTTCGAGAAGCTATTCTGAAGCTTTATAACTAATGAGGTTTCCCTAAGTTTAGTACTTCCCTAACGTGTTTGAGAGTGTTGTTGCAGCCTAGATGTACCCAATAAATGCTCTGTGAAGTTGGCACTATTTGAATGGGTTAATGATTAATGAGTCTTCTACATGAATGTGGATCTTCAAGTTTTGTTGTATGATATGCAGGATTGAGATTATTTCATTTCAATACCTCCTCTATGTTGCTCTTTGGATAATCTTAAAACATTTTGGCTATATATCCTTTAAATGTTTTTCTTATTTCTGTACGTATTATATGAATGAACTAAATTTCTTTTAAGAGCTCATGCAAGACTATCAGCATTGTTAACCAAAAAAATAAGAAAAGACTGGCAGTATATTCCTGATGTATGCATCACCTGTTGGCATGGTGCTTGTTATGTTCGTTGCAGGAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAA</genome_strand>
        <mrna_strand>TAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAG..............................................................................................................................................................................................CTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTG.................................................................................................CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGGGTTAAAATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699011" ref_strand="+" ref_description="SGN-E699011 [FA08BB04]">
      <seq>ggggcaacggcatcctagaagggacatacacctcaccatggccagctgaccatccaaaatcagacgagtatttctctgaccctcgtcttgcggcatatgctgtacctaatggtccgatagtcccctgcggcgatattgcgaaggactacttacgaagggaggtagagatattaagaacaaaaaaacattggaggaaagcatacttctatctgtgggatgagcctcttaacattgaacaatatacttccctccgccgcatggccagtgatattcatgcctatgcacctgatgctcgtattctgacaacttattactgcggaccaagtgatgcacctcttgctacaaataactttgaggcttttctgaaagttcctgcgttcctacgtcctcatactcagatatattgcacaagcgaatgggttattggtaacagagaggatctggcgaaggatattatcgcggagatacaaacagaaaacggagaggagtggtggacatatgtatgcttgggaccaggtgatcctcatcccaactggcacttggggatgcgaggcactcaacaccgtgctgtgatgtggcgtgtgtggaaagaaggtggaacaggtttcttatattggggtgccaactgctatgagaaggcaacagttcctagtgctgagattaagttcaggcgtggccttcctccaggtgatggagttttattctatcctggtcaggtgttctcatcatctcagcaacctgttgctttcctgagactagagaggctcttgagtggcttacaggatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="19985" stop="28864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20263" g_stop="20307" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20308" i_stop="20497" i_length="190">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20498" g_stop="20579" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="127" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20580" i_stop="20676" i_length="97">
            <donor d_prob="0.120" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20677" g_stop="20770" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="221" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21453" g_stop="21549" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="318" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22603" g_stop="22696" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="412" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26868" g_stop="26940" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="485" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26941" i_stop="28138" i_length="1198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28139" g_stop="28312" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="659" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28313" i_stop="28436" i_length="124">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28437" g_stop="28559" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="782" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28560" i_stop="28683" i_length="124">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28684" g_stop="28690" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="789" r_length="7" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E699011" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20263" e_stop="20307"/>
          <exon e_start="20498" e_stop="20579"/>
          <exon e_start="20677" e_stop="20770"/>
          <exon e_start="21453" e_stop="21549"/>
          <exon e_start="22603" e_stop="22696"/>
          <exon e_start="26868" e_stop="26940"/>
          <exon e_start="28139" e_stop="28312"/>
          <exon e_start="28437" e_stop="28559"/>
          <exon e_start="28684" e_stop="28690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAGGTAATATATGATGCTTATTGCTTAGTATACCTGTACTTGTGAAACTCTCGTTCTTCTAGATCTACTTGAAGTCTTGAATAGATAAGTTTGTAAAGGTGCTGAATGGAGACTCTAGTTCTATTCTCCTACTGGCTTTTACTCCAAGTGTATCTACATTAAACTAAAATTTCTGTCTCTAATGCTGTTCTAGCTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTGGTATGATGGACAATTTTTTGCCAAAAGTTCTAGGATAGTAGGATGTATGTTGTGTACAAGTTGATCAGTTTACTTTTGTTCCTTAATTTGGCATTAGCGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAGGTAAGTGAGCAGATTGAATTGCTATTTTTTTATAACATATACGACAAACTTTTTATTGTTCTAGTGACACTTGCAGTTCAAAGTCAAGTATCCACCTGTTTGTAGCTGGGACGTGGTCTTTACTCTTTCTTCTTTCGTAGATGAGAAACATCATTTTCCTGAAATATGTTGTTTGTCGTTACAACACCAGGCAACAACTATTCCTCAATAACAAACTTTGTATTCATACATATACACACACACACACACACACACACACACATACACATGACGTGTATATAAATATCCTATTTTATGCTTTAAACCGGTAAATTCTTTTATCCATACAAAAAAGGGGAAACATACGGTGTACAGACTTATAGTGCTTTAACTGTCTTTTAAAAAAGGTAAGACAATCATGGGATGGACTAATTTTTTTTTCTTCCATTCGAAAAGGCTATTTGTGTAAGACCCAATGTGATCCGACCCTTCCCCATAGCCTGTGCATGGTGGGAGCTTAGTGCACCGGGCTAACTTACTTTCCCTATTCAAATACTAACACTGTACATTGTTTTATTCCTTTCCTTTACCCCCTTGAATATAATTTTACTTTTTTCACTCACTTTTCCTACTTCGGGCAATTGATGGTAACTACCTATCTTTATGACTTTGTTCTAAATTAGTTTTGTTTGCATTTGTTCAGCCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCGGTGAGCATCAGATTTCTCTTCATCACATGTATTTATTTCAATGAGATGTTGTGCCTGATAGCTATATGTCTATTTCTGTATCTTCTGTTGCTCTTTGGATTGAAGAAATCTATCTACTAACTAGAATTGTGCTATATCTGTTTGGATGATGGACCTACTGTGCTATATTTCATAAGCCAAATATGCGAGGACAGATTGAGTTGTGGAGTTGAAACAAAAAGCACATTTTTTGCTGCCAACCCACTCTGAATCATATGATAAGCTGCTGATTGGAGAGTATTTGCTGTCACATTTAGTGTTGAAACTCCTGCTTCTTATGGACACTTCAAATAGAAACGGAAGAACAGTAGAAATTCTTCATCTAGGGATTCCTGAGTCTCGTTGGTGCCTCTGTTTATGGCCAGTTCTTGCAGAAAATTCTGTATCTAACACACTTATTACTTGAGTGCGGCGTTATTCTTACTCTGTCTGAAATAATTTTTTAGAGGGATATTGCTTTGTCTCATATTATTCTGGATGTCAATGATTTCTTGGAACATATGCAGCTGTTGTGCTAATGTAACTGGTGTGTGCTATTTGTTGAGACACATTTTAAGGTGAAAATATTAGATATGTCCCAGTTATGCATGGTTTTGCAATTCCATCTTGGTGCATTTATCCTCTACACTTACATTTGGAACACTTAATTGATTTCTTGATGACTTGGAAACTGAGAGGGTTACCATGCCTTGAAGTAATTGACATCAACTTTCTGGCGATTCTGTTTGCTTTATCTGAAATTCAAAGGTAAAATTTGAGTGCTGTCACTGACAGAAGCATCAAATGAAGCTTCATCTGAAACAATCTCACATGATTTTTGATCTTTTTTTTTTTTTGAGAAAGCACATGATTTTTGATCTTTTTTTTTGAGAAAGCACATGATTTTTGATTTTTGTGATTGACAAACTAGATATTTATTTGTCTCTCTTTGGCCTAGATCTGTCTGAATATTCTTTGGTAATTGTTATTTGCGTGTATAACTTTCTTCACATGGTTACTGTTCTTATTTTATAGGACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAGGTAGTGATTTAGTTTCTTGAGAAATCCTTTGTTTTATTTCCAATGTACAAGTATGAGAACGACCAAGGAACTATTACATTAAAAAATGAATGTTGTGATTAGTTTTTACCTACCTTATAAATAAAAGAATGTGGTGATTAGTAAAAGAACCGAGAAGTTTATTTTGTTAGTATTGTAGCTCAGATGGATGGAATACAAACACTGCCCTTTGTGAGAACTCACTGAATAAATTGGGTATTAATTCAGTTTTGGATGAGATAATCTGGAAGTCTCATTATCTGAGCCAAGTTCAGTGATTTGAAGTAGTTGAATTTGCTATCTTTTGATTTGGTATAGTGAAAGCATCACGTTCTCATGGATTAGCTTATGTCTTAGTTAACAAGTTTGAGCCCTGTGCCAAGTGAACTAGGTCCAGTATATCAGTGGAGAAGGGTAGGAAATTCTGCCCCATTATCCCCGAGTTTTGGTTGGAAATTCATTTATACTGAAACATCATAGTTTACTACTGCATCTCTTCAATTTTAGAGACCTGCTGATGTATTTCTTTCCATATATCATACCCACTAGTTTCGGACATGTGCCCAAGCAAGCACTACATATGGTATAAGTCAATATTAGACCACATTATAACGAGTATTACAAACTGTTCGGCAGGAAAATACAAGTTGAAATAGATGAGCAATCAACCTGTCCAGGTGACTTCTTCTTTGGATGCCAAATGATTTGATATTCTCTGAACCTGCAAAATTTGAACAACTAAGGACGTGTTTGGTACAAATGAAAATGTTTTCCATGAAAAGTGTTTTTTTGGAAAATAAGTGGGTTTCTTACTTATTTCGTTGTGTTTGGTACATAAGCAAAAAAATATTATGCTGAAAATATTTGTAGATAATCTTGTAATAGGGGTGAGGCTAAGGGGGTGGTGGGGATGGGGCTAAGGGAGTCCGGTGAAGATGAGGTGTGTTAGGAGGGTGGGGAGGACACAATAAATGTGGAATGTCACTCGTGGAATTTATTTTCCCTACTTTCACTAAGGAAGTTATTTTCCTCATTTTTAAGGAACTTGTTTTCCTAAAGAAAATATCCTCCTAAAACTTTGACCAACCGATCATGAGAAATGTGGAGTGTCACTTGTGGAATTTATTTTCCCTACTTTCACTAGGGAGGTTATTAACCTCATTTTTAAGGAACTTATTTTTCTAAAGAAAATGTTCTCCAAAAACTTTGACCAACCGATCATGAGGAAATTAGTAAACACTTTCTTGGAAATATTTTCCTCCATACCTAGTGCACCCTAAATTAAGTTTGGTATTAAGAATGTTTACTGAGTTACATCTTTGTGCTATAAGGTGCAGACATGTAATACATTTGTATGTTATCCAATACTTCCTTATAGAGATGATGTTCTTGGCGTATGTCTCCTATGTCAATACAGACAACTAATGAAGCAGGCAATGTAGCAACTAATGAATATAATACAAGATTGAGATAGTATTACTTATTCATTAATGAATACCTATTCGTCAACGAATATTAGCTACCAAAATACCCTCAACTATATATTGTTATTGGATTTACCTCGGAGGTACTACCGGATAAATCATAATGGCAAGCAAAGAAGAGCTATGAAACAATGCATACCTATCAGCAAGTTGAAGAGAGATGCAATAAATGAGGTAATTCAAAGAAGTAACAACTAATGAATATAACACAAGATTGAGATTGTATTACCTCTTTGTCAATGAATATTAGCTGCCAACGGGCACCCTCCCCATTAGCATTTCTGTACTCCCTTTATTCAACTTCTTCGAATTACTAAAACCTTAGTCACCCATTCTGTTTTATTACCAATCTAGTGCTAACCGGTAATTGAATTACAACAAAGAGTTTGTAATATAGGAAAACCACAAAGACATAAGATACTATATGTTCTTTCATAGTAATTATTTTTTGTAGCAATTATTTAACATTTAATAGATTTCATCAAATCACATGCGAAGTCTTAATAATTAAGTAACATATAAATTATCCAAAAATGTGTAATGTTTTGCATGTTGGAAAACATATCATGTGTAATCCCACAAGTGGGGTTTGGGGAGGGTGGCGTACGCGACCTTATCCTTATCTTGTGAAGGTAGAAATATTGTTTTCGATATACCCTCAACTCGAGGAATACATCAAAAACAAGTATGAAAAGGATATATAGTAGTGGAGAAGTCATGCAGAAAATAATAGGGAAGAAAAACAGTAGCAATAACCAACTACACGACAATCAAAGCAAAGGAAACAAAAATAATGATAAAATCATAGAATAAGACAGTAGAAGTGTAATAATACAAATACGGAGAAGGAAAACTAGACAATGCTGGACCACCCACTAACCTTCTTCCCTGATCCTCGATTTTCATATTCTCTTATCTAGGTTTATGTCCTTGGCATGTTGCAGGTGTGTCATCTCTCGCTTATTCACCTCTTTGGCCTACTTCTACCTCTCCTCATCCCGCCGAAGTCAATCTCTCGCATATCCTCACTAGAGCATCTGTATCTCTCCTCTTCATGTGCTCAAACCATCTCAGTTTGCCTCCCTCATCTTTTCTACCATAGAGGCCACTCCAACCTTGTCCAGAATATCTTCATTCCTAATCTCTTATAGTTCTTCTGGAAATGTGTAAAGTTTTGCAACCTGGAGAGCCCATAAATTTATAGAAGGAATTCTTTCCATGCAACAATTTATCATCTATTACCGGTATAAATTAGCATTTAATATGATGTCATTAAATAAGAACCCTTTTGATAATCGTTCATATTGATACTGGGGTTTTGTTTCCTTAAACGTGTAGTTTTTAATTTTTTTAGGATAAGGGGTAGTTTAGTCGATCTACTTTTCAAGGGTATTTCCATAAACCAACTTCCCTCTTTTAGAATATTATATGGATTTTTTTTGGACAAAAATTTTGTTTTCTTTTTCTGTAGTTCTTTTCCTCTCATGCTTTAGTTGTTATGTTGCCGTTACTTGAATTCTGATCCAGTCGATGTTAAATGAAATTACTTTTTAAACAATGTTGGTTGCTCACTCATACTTTATGAGAACCATTGACTGGAATATTAAGCCAACTATTCATGTTTGCCCTGATTCACGATTAGAGGTTGGAGACAAAGCCTAAAAGAATTCAATTAATGAGTTCTTTTATACTACTTCCTTTATCTAAAAGAATGACAAAGGTTGGCGAGAATTCTGATTTCGATTTAATTGTTTTTAAATGACATTTATATATCTACGAATAACATAGAAGTACCATGAATCAACTTTCTATTTAAAATATTTACAATTGTTTGAATAAATCCCCAATAAACTAGTTGTGCATACTTCCGTTCTCCTTCCTTTTCTGTTTTTTGATCACCACTTGTTGCATCTGGAGACCTTGTCAGTATTCTCTTCCTTATTGATCACTTACTAGCAGGGGCAGATCCATATGGAATCTTGGTTCAGTGGTGACAAGTTGCTCCGTTTGAGGTTGAGGTCAGGGGTTCGATTCCCACTGGCCTCTGTTTTCATTCCTTTGTAATTAATTAATCAATAAGGGCTTCATTTGCGTGCCCTTGCATTTACCAAATATCCAGCCCCTTTTTTCTTGTAATAAATAGGTTTCAAATCCCAGATTTCTTTTTTGAATTGTATGAATAAAAGTTTGACCTTCTTTTCTCCTGTTTTCCTTTTCTTTACCGGTTTTAACTTGCACAGGTTTTGTTTCTTCCTTTTTTTCTTTCATGTTCACTATCTTTGGTTTCATCAACGAAGTACATAAAAAATGATGTACTAATAAGATTTATGATGAGCAGGATGCGGGGAGACTCGCATATTCTCTTCTTATATTATTTGAATGGTTATTTAGTTTGCTATATAGACGTAAGATATTTAAAAATGTAAGTAATGATGCTACTATTGACGTTTGAAGTATGAAAACTCGTCGCGGACAACTATAAATGAATGATTTTCCCTTTGTGGATATAATATTAACTATACTTTGCTCTTTAACTTGTTGTCACCGTGAAATTTTATATTATTTAAATAAAAGTGTCCATCTTAAGAGCAATGGTGCACCTATGCTCTTAAAATCCGGGATATGCCTCTGCTTACTAGGCTTTTTAACGTATTTCCTTGTCTATTCAGCGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAGGTAATAAAAATGTATAAACTGTTTTTTAATGGATTATTTTATGGAGTAAACAGTGGATCACTATAATTACTTTTAAACTCTCGTTAAATGAGGAAAGGAAAACGATGCAGAGAAGTGTCATACAGATTAATGCGATAAGATAAGTTATTGCCTGGTTCCTTGCTGATATCACATTCATGTTTTCTCCCTTTGCTTTTTTCCTCTAATGCAATAAGATAAGTTATTGCCTGCAGACACTGCTGACAATTAACTCTTATTTTGTGGACTAGAGCTTAGCATCAGAGATTCTAGGATAGCCAATGGTTTTAATACATGATTCCATATGCTATATATAGGATATTCTATTTTAGTTACAAGATCAGATGGCACCTTGTTTATCATGGATTTCTTCACTGGTGGATAAGAGGACTCTATCTTAGGTCTCACATCTTTTTATGGATGAATATTCCTTTCTTCGTAAAGAATTTATGCGTGATTTTTATTGGAAAAAATGTATGCTTGATTGGGAAGAAAAAACGAAGTTAAGGAATCTATGCAAATTGGGACCCTGTCAAGTTCTAACTTATGTGCATGATTTATCCACAAATGGGTTTAGCAAAGGCCACCTTCAAATGATTAACATTCTACTCATCTGTCTGTATGGAAGTAGTTGATCACTGCTAGTGTATATGACATTGATTCATAAGGACATTAGAGAGACATGAGATAGTTTTAGCATTTTACTTTTTCTCTTTCAATGAAATTTGGCATCTTATTTCGAGAAGCTATTCTGAAGCTTTATAACTAATGAGGTTTCCCTAAGTTTAGTACTTCCCTAACGTGTTTGAGAGTGTTGTTGCAGCCTAGATGTACCCAATAAATGCTCTGTGAAGTTGGCACTATTTGAATGGGTTAATGATTAATGAGTCTTCTACATGAATGTGGATCTTCAAGTTTTGTTGTATGATATGCAGGATTGAGATTATTTCATTTCAATACCTCCTCTATGTTGCTCTTTGGATAATCTTAAAACATTTTGGCTATATATCCTTTAAATGTTTTTCTTATTTCTGTACGTATTATATGAATGAACTAAATTTCTTTTAAGAGCTCATGCAAGACTATCAGCATTGTTAACCAAAAAAATAAGAAAAGACTGGCAGTATATTCCTGATGTATGCATCACCTGTTGGCATGGTGCTTGTTATGTTCGTTGCAGGAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAGGTTAGTGCATCCCTATGCATGACACGAAACTGATGGATAAACTATGTCGTACAGGTTGATGGTTGTGAAATAATTGATATATATTTTTCTCTTCATGCCTGATTCGAGTAATATTTGTCTGCAGATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAGGTATTTTTCATATTGACTTATTTCCTCTTTAAGTAATATTTTTGCACTTCCGTAGAGAGCCATCAACCATGAAGTCCCTTGATCTTTTATGGATGAAAGGTGCAATGTTGTCTGTTTTATGCAGAACAGAG</genome_strand>
        <mrna_strand>GGGGCAACGGCATCCTAGAAGGGACATACACCTCACCATGGCCAG..............................................................................................................................................................................................CTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTG.................................................................................................CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTACTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAG............................................................................................................................ATTAAGTTCAGGCGTGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTTCCTGAGACTAGAGAGGCTCTTGAGTGGCTTACAG............................................................................................................................GATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705167" ref_strand="+" ref_description="SGN-E705167 [FA26BD10]">
      <seq>cgcctctgcggcgatattgcgaaggactacttacgaagggaggtagagatattaagaacaaaaaaacattggaggaaagcatacttctatctgtgggatgagcctcttaacattgaacaatatacttccctccgccgcatggccagtgatattcatgcctatgcacctgatgctcgtattctgacaacttattactgcggaccaagtgatgcacctcttgctacaaataactttgaggcttttctgaaagttcctgcgttcctacgtcctcatactcagatatattgcacaagcgaatgggttattggtaacagagaggatctggcgaaggatattatcgcggagatacaaacagaaaacggagaggagtggtggacatatgtatgcttgggaccaggtgatcctcatcccaactggcacttggggatgcgaggcactcaacaccgtgctgtgatgtggcgtgtgtggaaagaaggtggaacaggtttcttatattggggtgccaactgctatgagaaggcaacagttcctagtgctgagattaagttcaggcgtggccttcctccaggtgatggagttttattctatcctggtcaggtgttctcatcatctcagcaacctgttgcttcactgagactagagaggctcttgagtggcttacaggatattgagtacctcaagctgtatgcttcaagatatggtagggatgaaagcctcaaccttttggagaagacaggaatgtatctagggcctgagcgctacacttcggaacacagaccaatagatgtcatgaggggtgaggtttacaggacatgccaatcgtaaatttgaagctcgagtttgatgacacccatctgtatcaatgtaaagcatctcaatcatatcggtttgtatgatgtatatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="20370" stop="29699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20677" g_stop="20770" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="102" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21453" g_stop="21549" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="199" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22603" g_stop="22696" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="293" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26868" g_stop="26940" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="366" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26941" i_stop="28138" i_length="1198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28139" g_stop="28312" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="540" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28313" i_stop="28436" i_length="124">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28437" g_stop="28559" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="663" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28560" i_stop="29155" i_length="596">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29156" g_stop="29399" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="907" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E705167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20677" e_stop="20770"/>
          <exon e_start="21453" e_stop="21549"/>
          <exon e_start="22603" e_stop="22696"/>
          <exon e_start="26868" e_stop="26940"/>
          <exon e_start="28139" e_stop="28312"/>
          <exon e_start="28437" e_stop="28559"/>
          <exon e_start="29156" e_stop="29399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAGGTAAGTGAGCAGATTGAATTGCTATTTTTTTATAACATATACGACAAACTTTTTATTGTTCTAGTGACACTTGCAGTTCAAAGTCAAGTATCCACCTGTTTGTAGCTGGGACGTGGTCTTTACTCTTTCTTCTTTCGTAGATGAGAAACATCATTTTCCTGAAATATGTTGTTTGTCGTTACAACACCAGGCAACAACTATTCCTCAATAACAAACTTTGTATTCATACATATACACACACACACACACACACACACACACATACACATGACGTGTATATAAATATCCTATTTTATGCTTTAAACCGGTAAATTCTTTTATCCATACAAAAAAGGGGAAACATACGGTGTACAGACTTATAGTGCTTTAACTGTCTTTTAAAAAAGGTAAGACAATCATGGGATGGACTAATTTTTTTTTCTTCCATTCGAAAAGGCTATTTGTGTAAGACCCAATGTGATCCGACCCTTCCCCATAGCCTGTGCATGGTGGGAGCTTAGTGCACCGGGCTAACTTACTTTCCCTATTCAAATACTAACACTGTACATTGTTTTATTCCTTTCCTTTACCCCCTTGAATATAATTTTACTTTTTTCACTCACTTTTCCTACTTCGGGCAATTGATGGTAACTACCTATCTTTATGACTTTGTTCTAAATTAGTTTTGTTTGCATTTGTTCAGCCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCGGTGAGCATCAGATTTCTCTTCATCACATGTATTTATTTCAATGAGATGTTGTGCCTGATAGCTATATGTCTATTTCTGTATCTTCTGTTGCTCTTTGGATTGAAGAAATCTATCTACTAACTAGAATTGTGCTATATCTGTTTGGATGATGGACCTACTGTGCTATATTTCATAAGCCAAATATGCGAGGACAGATTGAGTTGTGGAGTTGAAACAAAAAGCACATTTTTTGCTGCCAACCCACTCTGAATCATATGATAAGCTGCTGATTGGAGAGTATTTGCTGTCACATTTAGTGTTGAAACTCCTGCTTCTTATGGACACTTCAAATAGAAACGGAAGAACAGTAGAAATTCTTCATCTAGGGATTCCTGAGTCTCGTTGGTGCCTCTGTTTATGGCCAGTTCTTGCAGAAAATTCTGTATCTAACACACTTATTACTTGAGTGCGGCGTTATTCTTACTCTGTCTGAAATAATTTTTTAGAGGGATATTGCTTTGTCTCATATTATTCTGGATGTCAATGATTTCTTGGAACATATGCAGCTGTTGTGCTAATGTAACTGGTGTGTGCTATTTGTTGAGACACATTTTAAGGTGAAAATATTAGATATGTCCCAGTTATGCATGGTTTTGCAATTCCATCTTGGTGCATTTATCCTCTACACTTACATTTGGAACACTTAATTGATTTCTTGATGACTTGGAAACTGAGAGGGTTACCATGCCTTGAAGTAATTGACATCAACTTTCTGGCGATTCTGTTTGCTTTATCTGAAATTCAAAGGTAAAATTTGAGTGCTGTCACTGACAGAAGCATCAAATGAAGCTTCATCTGAAACAATCTCACATGATTTTTGATCTTTTTTTTTTTTTGAGAAAGCACATGATTTTTGATCTTTTTTTTTGAGAAAGCACATGATTTTTGATTTTTGTGATTGACAAACTAGATATTTATTTGTCTCTCTTTGGCCTAGATCTGTCTGAATATTCTTTGGTAATTGTTATTTGCGTGTATAACTTTCTTCACATGGTTACTGTTCTTATTTTATAGGACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAGGTAGTGATTTAGTTTCTTGAGAAATCCTTTGTTTTATTTCCAATGTACAAGTATGAGAACGACCAAGGAACTATTACATTAAAAAATGAATGTTGTGATTAGTTTTTACCTACCTTATAAATAAAAGAATGTGGTGATTAGTAAAAGAACCGAGAAGTTTATTTTGTTAGTATTGTAGCTCAGATGGATGGAATACAAACACTGCCCTTTGTGAGAACTCACTGAATAAATTGGGTATTAATTCAGTTTTGGATGAGATAATCTGGAAGTCTCATTATCTGAGCCAAGTTCAGTGATTTGAAGTAGTTGAATTTGCTATCTTTTGATTTGGTATAGTGAAAGCATCACGTTCTCATGGATTAGCTTATGTCTTAGTTAACAAGTTTGAGCCCTGTGCCAAGTGAACTAGGTCCAGTATATCAGTGGAGAAGGGTAGGAAATTCTGCCCCATTATCCCCGAGTTTTGGTTGGAAATTCATTTATACTGAAACATCATAGTTTACTACTGCATCTCTTCAATTTTAGAGACCTGCTGATGTATTTCTTTCCATATATCATACCCACTAGTTTCGGACATGTGCCCAAGCAAGCACTACATATGGTATAAGTCAATATTAGACCACATTATAACGAGTATTACAAACTGTTCGGCAGGAAAATACAAGTTGAAATAGATGAGCAATCAACCTGTCCAGGTGACTTCTTCTTTGGATGCCAAATGATTTGATATTCTCTGAACCTGCAAAATTTGAACAACTAAGGACGTGTTTGGTACAAATGAAAATGTTTTCCATGAAAAGTGTTTTTTTGGAAAATAAGTGGGTTTCTTACTTATTTCGTTGTGTTTGGTACATAAGCAAAAAAATATTATGCTGAAAATATTTGTAGATAATCTTGTAATAGGGGTGAGGCTAAGGGGGTGGTGGGGATGGGGCTAAGGGAGTCCGGTGAAGATGAGGTGTGTTAGGAGGGTGGGGAGGACACAATAAATGTGGAATGTCACTCGTGGAATTTATTTTCCCTACTTTCACTAAGGAAGTTATTTTCCTCATTTTTAAGGAACTTGTTTTCCTAAAGAAAATATCCTCCTAAAACTTTGACCAACCGATCATGAGAAATGTGGAGTGTCACTTGTGGAATTTATTTTCCCTACTTTCACTAGGGAGGTTATTAACCTCATTTTTAAGGAACTTATTTTTCTAAAGAAAATGTTCTCCAAAAACTTTGACCAACCGATCATGAGGAAATTAGTAAACACTTTCTTGGAAATATTTTCCTCCATACCTAGTGCACCCTAAATTAAGTTTGGTATTAAGAATGTTTACTGAGTTACATCTTTGTGCTATAAGGTGCAGACATGTAATACATTTGTATGTTATCCAATACTTCCTTATAGAGATGATGTTCTTGGCGTATGTCTCCTATGTCAATACAGACAACTAATGAAGCAGGCAATGTAGCAACTAATGAATATAATACAAGATTGAGATAGTATTACTTATTCATTAATGAATACCTATTCGTCAACGAATATTAGCTACCAAAATACCCTCAACTATATATTGTTATTGGATTTACCTCGGAGGTACTACCGGATAAATCATAATGGCAAGCAAAGAAGAGCTATGAAACAATGCATACCTATCAGCAAGTTGAAGAGAGATGCAATAAATGAGGTAATTCAAAGAAGTAACAACTAATGAATATAACACAAGATTGAGATTGTATTACCTCTTTGTCAATGAATATTAGCTGCCAACGGGCACCCTCCCCATTAGCATTTCTGTACTCCCTTTATTCAACTTCTTCGAATTACTAAAACCTTAGTCACCCATTCTGTTTTATTACCAATCTAGTGCTAACCGGTAATTGAATTACAACAAAGAGTTTGTAATATAGGAAAACCACAAAGACATAAGATACTATATGTTCTTTCATAGTAATTATTTTTTGTAGCAATTATTTAACATTTAATAGATTTCATCAAATCACATGCGAAGTCTTAATAATTAAGTAACATATAAATTATCCAAAAATGTGTAATGTTTTGCATGTTGGAAAACATATCATGTGTAATCCCACAAGTGGGGTTTGGGGAGGGTGGCGTACGCGACCTTATCCTTATCTTGTGAAGGTAGAAATATTGTTTTCGATATACCCTCAACTCGAGGAATACATCAAAAACAAGTATGAAAAGGATATATAGTAGTGGAGAAGTCATGCAGAAAATAATAGGGAAGAAAAACAGTAGCAATAACCAACTACACGACAATCAAAGCAAAGGAAACAAAAATAATGATAAAATCATAGAATAAGACAGTAGAAGTGTAATAATACAAATACGGAGAAGGAAAACTAGACAATGCTGGACCACCCACTAACCTTCTTCCCTGATCCTCGATTTTCATATTCTCTTATCTAGGTTTATGTCCTTGGCATGTTGCAGGTGTGTCATCTCTCGCTTATTCACCTCTTTGGCCTACTTCTACCTCTCCTCATCCCGCCGAAGTCAATCTCTCGCATATCCTCACTAGAGCATCTGTATCTCTCCTCTTCATGTGCTCAAACCATCTCAGTTTGCCTCCCTCATCTTTTCTACCATAGAGGCCACTCCAACCTTGTCCAGAATATCTTCATTCCTAATCTCTTATAGTTCTTCTGGAAATGTGTAAAGTTTTGCAACCTGGAGAGCCCATAAATTTATAGAAGGAATTCTTTCCATGCAACAATTTATCATCTATTACCGGTATAAATTAGCATTTAATATGATGTCATTAAATAAGAACCCTTTTGATAATCGTTCATATTGATACTGGGGTTTTGTTTCCTTAAACGTGTAGTTTTTAATTTTTTTAGGATAAGGGGTAGTTTAGTCGATCTACTTTTCAAGGGTATTTCCATAAACCAACTTCCCTCTTTTAGAATATTATATGGATTTTTTTTGGACAAAAATTTTGTTTTCTTTTTCTGTAGTTCTTTTCCTCTCATGCTTTAGTTGTTATGTTGCCGTTACTTGAATTCTGATCCAGTCGATGTTAAATGAAATTACTTTTTAAACAATGTTGGTTGCTCACTCATACTTTATGAGAACCATTGACTGGAATATTAAGCCAACTATTCATGTTTGCCCTGATTCACGATTAGAGGTTGGAGACAAAGCCTAAAAGAATTCAATTAATGAGTTCTTTTATACTACTTCCTTTATCTAAAAGAATGACAAAGGTTGGCGAGAATTCTGATTTCGATTTAATTGTTTTTAAATGACATTTATATATCTACGAATAACATAGAAGTACCATGAATCAACTTTCTATTTAAAATATTTACAATTGTTTGAATAAATCCCCAATAAACTAGTTGTGCATACTTCCGTTCTCCTTCCTTTTCTGTTTTTTGATCACCACTTGTTGCATCTGGAGACCTTGTCAGTATTCTCTTCCTTATTGATCACTTACTAGCAGGGGCAGATCCATATGGAATCTTGGTTCAGTGGTGACAAGTTGCTCCGTTTGAGGTTGAGGTCAGGGGTTCGATTCCCACTGGCCTCTGTTTTCATTCCTTTGTAATTAATTAATCAATAAGGGCTTCATTTGCGTGCCCTTGCATTTACCAAATATCCAGCCCCTTTTTTCTTGTAATAAATAGGTTTCAAATCCCAGATTTCTTTTTTGAATTGTATGAATAAAAGTTTGACCTTCTTTTCTCCTGTTTTCCTTTTCTTTACCGGTTTTAACTTGCACAGGTTTTGTTTCTTCCTTTTTTTCTTTCATGTTCACTATCTTTGGTTTCATCAACGAAGTACATAAAAAATGATGTACTAATAAGATTTATGATGAGCAGGATGCGGGGAGACTCGCATATTCTCTTCTTATATTATTTGAATGGTTATTTAGTTTGCTATATAGACGTAAGATATTTAAAAATGTAAGTAATGATGCTACTATTGACGTTTGAAGTATGAAAACTCGTCGCGGACAACTATAAATGAATGATTTTCCCTTTGTGGATATAATATTAACTATACTTTGCTCTTTAACTTGTTGTCACCGTGAAATTTTATATTATTTAAATAAAAGTGTCCATCTTAAGAGCAATGGTGCACCTATGCTCTTAAAATCCGGGATATGCCTCTGCTTACTAGGCTTTTTAACGTATTTCCTTGTCTATTCAGCGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAGGTAATAAAAATGTATAAACTGTTTTTTAATGGATTATTTTATGGAGTAAACAGTGGATCACTATAATTACTTTTAAACTCTCGTTAAATGAGGAAAGGAAAACGATGCAGAGAAGTGTCATACAGATTAATGCGATAAGATAAGTTATTGCCTGGTTCCTTGCTGATATCACATTCATGTTTTCTCCCTTTGCTTTTTTCCTCTAATGCAATAAGATAAGTTATTGCCTGCAGACACTGCTGACAATTAACTCTTATTTTGTGGACTAGAGCTTAGCATCAGAGATTCTAGGATAGCCAATGGTTTTAATACATGATTCCATATGCTATATATAGGATATTCTATTTTAGTTACAAGATCAGATGGCACCTTGTTTATCATGGATTTCTTCACTGGTGGATAAGAGGACTCTATCTTAGGTCTCACATCTTTTTATGGATGAATATTCCTTTCTTCGTAAAGAATTTATGCGTGATTTTTATTGGAAAAAATGTATGCTTGATTGGGAAGAAAAAACGAAGTTAAGGAATCTATGCAAATTGGGACCCTGTCAAGTTCTAACTTATGTGCATGATTTATCCACAAATGGGTTTAGCAAAGGCCACCTTCAAATGATTAACATTCTACTCATCTGTCTGTATGGAAGTAGTTGATCACTGCTAGTGTATATGACATTGATTCATAAGGACATTAGAGAGACATGAGATAGTTTTAGCATTTTACTTTTTCTCTTTCAATGAAATTTGGCATCTTATTTCGAGAAGCTATTCTGAAGCTTTATAACTAATGAGGTTTCCCTAAGTTTAGTACTTCCCTAACGTGTTTGAGAGTGTTGTTGCAGCCTAGATGTACCCAATAAATGCTCTGTGAAGTTGGCACTATTTGAATGGGTTAATGATTAATGAGTCTTCTACATGAATGTGGATCTTCAAGTTTTGTTGTATGATATGCAGGATTGAGATTATTTCATTTCAATACCTCCTCTATGTTGCTCTTTGGATAATCTTAAAACATTTTGGCTATATATCCTTTAAATGTTTTTCTTATTTCTGTACGTATTATATGAATGAACTAAATTTCTTTTAAGAGCTCATGCAAGACTATCAGCATTGTTAACCAAAAAAATAAGAAAAGACTGGCAGTATATTCCTGATGTATGCATCACCTGTTGGCATGGTGCTTGTTATGTTCGTTGCAGGAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAGGTTAGTGCATCCCTATGCATGACACGAAACTGATGGATAAACTATGTCGTACAGGTTGATGGTTGTGAAATAATTGATATATATTTTTCTCTTCATGCCTGATTCGAGTAATATTTGTCTGCAGATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAGGTATTTTTCATATTGACTTATTTCCTCTTTAAGTAATATTTTTGCACTTCCGTAGAGAGCCATCAACCATGAAGTCCCTTGATCTTTTATGGATGAAAGGTGCAATGTTGTCTGTTTTATGCAGAACAGAGAATTTGATGCACTGTGAAAAAAAAACATGTTTGAGCGATATCCTTTTGATGTCTTAACTGCAGGGTTTAGTAATTACATCCTTTCTTGGTTTCAATTTAATTTGCTTTCTCTTGTCACTTCCTATTTTCAGAAACTTGATACTTCTTTTTCCTTCTCTCATTCCGTTTAATATGAACGTTTGCCGATGTTGTTCTGTTTGGATTACACTTCTTCAGTTATAATGTTTTTCTGCATTTTATTTAATGAGATATCTCCTAGTAAATAGAACTCCCTCTCCTTAGTTTCCTCTATTACGTTTCCATAGTAATAGAAGTTCTATCCCGAATAAAGTAATAATTAGAAGAAAGAAAGATGTTAAATCTACCTATAAATCATTCAATTCTTTTTAATCTCATATTGTCTGATCACCTTTTCATTTTCCTTAATTGTATTCACTCCTCTTTTTTCATGACTGATTTTCTTAGGATATTGAGTACCTCAAGCTGTATGCTTCAAGATATGGTAGGGATGAAAGCCTCAACCTTTTGGAGAAGACAGGAATGTATCTAGGGCCTGAGCGCTACACTTCGGAACACAGACCAATAGATGTCATGAGGGGTGAGGTTTACAGGACATGCCAATCGTAAATTTGAAGCTCGAGTTTGATGACACCCATCTGTATCAATGTAAAGCATCTCAATCATATCGGTTTGTATGATGTATATTTAT</genome_strand>
        <mrna_strand>CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTACTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAG............................................................................................................................ATTAAGTTCAGGCGTGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAGTACCTCAAGCTGTATGCTTCAAGATATGGTAGGGATGAAAGCCTCAACCTTTTGGAGAAGACAGGAATGTATCTAGGGCCTGAGCGCTACACTTCGGAACACAGACCAATAGATGTCATGAGGGGTGAGGTTTACAGGACATGCCAATCGTAAATTTGAAGCTCGAGTTTGATGACACCCATCTGTATCAATGTAAAGCATCTCAATCATATCGGTTTGTATGATGTATATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286469" ref_strand="+" ref_description="SGN-E286469 [cLES-12-A24]">
      <seq>gtggcgtgtgtggaaagaaggtggaacaggtttcttatattggggtgccaactgctatgagaaggcaacagttcctagtgctgagattaagttcaggcgcggccttcctccaggtgatggagttttattctatcctggtcaggtgttctcatcatctcagcaacctgttgcttcactgagactagagaggctcttgagtggcttacaggatattgagtacctcaagctgtatgcttcaagatatggtagggatgaaagcctcaaccttttggagaagacaggaatgtatctagggcctgagcgctacacttcggaacacagaccaatagatgtcatgaggggtgaggtttacaggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="27928" stop="29607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28228" g_stop="28312" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28313" i_stop="28436" i_length="124">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28437" g_stop="28559" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="208" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28560" i_stop="29155" i_length="596">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29156" g_stop="29307" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="360" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E286469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28228" e_stop="28312"/>
          <exon e_start="28437" e_stop="28559"/>
          <exon e_start="29156" e_stop="29307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAGGTTAGTGCATCCCTATGCATGACACGAAACTGATGGATAAACTATGTCGTACAGGTTGATGGTTGTGAAATAATTGATATATATTTTTCTCTTCATGCCTGATTCGAGTAATATTTGTCTGCAGATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAGGTATTTTTCATATTGACTTATTTCCTCTTTAAGTAATATTTTTGCACTTCCGTAGAGAGCCATCAACCATGAAGTCCCTTGATCTTTTATGGATGAAAGGTGCAATGTTGTCTGTTTTATGCAGAACAGAGAATTTGATGCACTGTGAAAAAAAAACATGTTTGAGCGATATCCTTTTGATGTCTTAACTGCAGGGTTTAGTAATTACATCCTTTCTTGGTTTCAATTTAATTTGCTTTCTCTTGTCACTTCCTATTTTCAGAAACTTGATACTTCTTTTTCCTTCTCTCATTCCGTTTAATATGAACGTTTGCCGATGTTGTTCTGTTTGGATTACACTTCTTCAGTTATAATGTTTTTCTGCATTTTATTTAATGAGATATCTCCTAGTAAATAGAACTCCCTCTCCTTAGTTTCCTCTATTACGTTTCCATAGTAATAGAAGTTCTATCCCGAATAAAGTAATAATTAGAAGAAAGAAAGATGTTAAATCTACCTATAAATCATTCAATTCTTTTTAATCTCATATTGTCTGATCACCTTTTCATTTTCCTTAATTGTATTCACTCCTCTTTTTTCATGACTGATTTTCTTAGGATATTGAGTACCTCAAGCTGTATGCTTCAAGATATGGTAGGGATGAAAGCCTCAACCTTTTGGAGAAGACAGGAATGTATCTAGGGCCTGAGCGCTACACTTCGGAACACAGACCAATAGATGTCATGAGGGGTGAGGTTTACAGGACATG</genome_strand>
        <mrna_strand>GTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAG............................................................................................................................ATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAGTACCTCAAGCTGTATGCTTCAAGATATGGTAGGGATGAAAGCCTCAACCTTTTGGAGAAGACAGGAATGTATCTAGGGCCTGAGCGCTACACTTCGGAACACAGACCAATAGATGTCATGAGGGGTGAGGTTTACAGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746161" ref_strand="+" ref_description="SGN-E746161 [GI|47104893]">
      <seq>gatgacagctttcaaaaatagtctcttctctttcaaactctgtgtgttctaatccaaaaaaacaaaaccgccgccatgtatgaacattaaagctcttcttcccatttttttctcttcttcaagaaaaaaaaagaactttcttctttagggaacacaacaattcccaaaaataagtgtagaatttttcctagttttgggaatcgtttattgattttctggtgtaaactgtgaagaggctgaaaggggagaaaacaaagtattagctgaaaaacatatgtaaaaatctgaagttttctaagctataaatatggcagagattgaaaaatcagctgaagaatcaatcatacagcaaaattttccagtaaagaggaaaaggaatcttcctggaaatcctgatccagaagcagaagtgatagctctatcgccgagaactcttatggcgacgaaccgatttgtttgtgagatttgtaacaaaggttttcaaagagatcagaatttacagcttcatcggagaggacacaacttgccatggaaactgcggcaacgaacgagtaatgaagtgaaaaaacgtgtttacgtttgtccagaatcgtcatgcgttcatcatgatccttctagagctttaggcgatctcactggaattaagaagcatttctgcagaaaacatggtgagaagaagtttaaatgtgaacgttgcaccaaaaaaatacgctgttcattccgattggaaagcacacatgaaaacttgtggtactagagagtatcgttgtgattgtggaactttattttccaggagggatagcttcataactcatagagcattctgtgatgcattagctcaagaaagtgcaagatctcatcaaccattaatggaggatacaaatgctgaaggtgatttgaaggttgatgaagctataaacaaaacggtgtcgtcttcatctagtcctccaccacaacctttaactccatcaactagcgttctttctccagttctgtccattcaaagttcagagttgcctgtagaatatcaaaatcaaggtggagtacaaatacaacaagcacagggtacaacaacacctgtttctaccacccctgtcatcacaatttccactgctgctgctagtggtcctagtagtagcaaggtgtttgctagtgtgtttccatcgtcgtcatcagctcagcatgttaactcgtcttactcggatattctacgtgctattgagaccgagcaagtgatggctgtagagcccatatcgctctcattgtcatcttctctttacttgtctaataatagggcaagtttattccaagaacacactggtggccacggccacggccatggccagcattatggttcagcaacaatgcagccagcattatctgcaactgcattacttcaaaaagcagcccaaatggggtcaacaacttcaaacaactcgtttctccgtggccttggattggcaatgtcaccgagtacttctacaccggaggagaattcactagcaaggaggactaatgctcttggccatgtgaagctagagagcaatattaatgcagaggtacccgggctcgggatacaacttcatggtcattcaggatttactgacttgatgatgggtccatccatatctcatcagacatctatgatgttcggaagcaaacctccgactcttgattttcttggtttaggaaatggtgctagtggaactccatcaaacggattttcagcgtttttaagctcaatggaagacggatttggtgttgtagctgagccttgggatgacccttctgatagaaaacctgctatgctctaactagagtttagttgcattaatgcaacgcctgtacaagggctttgctcgcgcgctcatcaccacctacctacatttcacatctcgacacagtggaacgtgtaacccgcctgtcagtgaagctctctattcacatccccctcaaagtttttgaattggagttcagttttttgtttgatattttatacatatgcaatagttgatagggatagctaagttatgttcataatcttgatattgcacccttttggtctctcaaccaaacatcattatgagattttagtttaattaggagagtatagtagatggatctagtagctattagctaggtttctaaattattatgtagtaattattatgtgagagaataactaagttcacaatgtggatatttctcacttgggaaaatttctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="38134" stop="41884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38433" g_stop="38827" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38828" i_stop="38911" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38912" g_stop="39308" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="793" r_length="398" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39309" i_stop="39406" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39407" g_stop="39624" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="1011" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39625" i_stop="40367" i_length="743">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40368" g_stop="41583" g_length="1216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1012" r_stop="2227" r_length="1216" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2228" polyA_stop="2241"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E746161" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2226</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38433" e_stop="38827"/>
          <exon e_start="38912" e_stop="39308"/>
          <exon e_start="39407" e_stop="39624"/>
          <exon e_start="40368" e_stop="41583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGACAGCTTTCAAAAATAGTCTCTTCTCTTTCAAACTCTGTGTGTTCTAATCCAAAAAAACAAAACCGCCGCCATGTATGAACATTAAAGCTCTTCTTCCCATTTTTTTCTCTTCTTCAAGAAAAAAAAAGAACTTTCTTCTTTAGGGAACACAACAATTCCCAAAAATAAGTGTAGAATTTTTCCTAGTTTTGGGAATCGTTTATTGATTTTCTGGTGTAAACTGTGAAGAGGCTGAAAGGGGAGAAAACAAAGTATTAGCTGAAAAACATATGTAAAAATCTGAAGTTTTCTAAGCTATAAATATGGCAGAGATTGAAAAATCAGCTGAAGAATCAATCATACAGCAAAATTTTCCAGTAAAGAGGAAAAGGAATCTTCCTGGAAATCCTGGTAAAGTTTTATCTTTCAGTTTGTACGATTTTTTTTGTCGATTTCTGTTTTGCTGAAGGTGAAAATGGTTATTATTATTTGTAGATCCAGAAGCAGAAGTGATAGCTCTATCGCCGAGAACTCTTATGGCGACGAACCGATTTGTTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAGAATTTACAGCTTCATCGGAGAGGACACAACTTGCCATGGAAACTGCGGCAACGAACGAGTAATGAAGTGAAAAAACGTGTTTACGTTTGTCCAGAATCGTCATGCGTTCATCATGATCCTTCTAGAGCTTTAGGCGATCTCACTGGAATTAAGAAGCATTTCTGCAGAAAACATGGTGAGAAGAAGTTTAAATGTGAACGTTGCACC-AAAAAATACGCTGTTCATTCCGATTGGAAAGCACACATGAAAACTTGTGGTACTAGAGAGTATCGTTGTGATTGTGGAACTTTATTTTCCAGGTACTGTAACGTCTAGTATTTGTGATAAAATAATAAATAATTTTAATCATTCGATCGAGAACTAATTTTTTTATTTTATTTTTTTATATATGGTGTAGGAGGGATAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTCAAGAAAGTGCAAGATCTCATCAACCATTAATGGAGGATACAAATGCTGAAGGTGATTTGAAGGTTGATGAAGCTATAAACAAAACGGTGTCGTCTTCATCTAGTCCTCCACCACAACCTTTAACTCCATCAACTAGCGTTCTTTCTCCAGTTCTGTCCATTCAAAGTTCAGGTAAAAAAAATAATTTAAAAATAAAAATAAAGTTAATTCTACGTCCTTTTGGCATTTTTCGATACGCAAAATGAGATAAATAACGATATTCTATATTCAAAATTTCAAATAATTCAAATCACAATAACAAGTAACAAATTTTATTTTGAGATTATTATTCTTATCTCGCTTAGAAAATCGTGCTCGGGTATTGCACATGCATAATGTGCAATTTGTCAACATCGTAAAAGCCTACGAGTATGTCTACGAAAACGCTTCTCTCGTTTGAATGGAAATTTGGATTCTTCAGGGTGTGATTTTTCATGTGATGTTCTTTTTTTTTATATAGAAAAAATATATATAATTTTTTGGATTTGTCTATTAGTGTTCTTTGTTTTTTTTCTGAACCTTCGTCTTCTTGTGTGATTTTCACCATTAATTTATTACTATTCATTTAATATATAGTTTTGACCACGGGGGAAGAGATGAATAGTAAAATGGGTGTAATTAATTTTTTTATAAAAATAATGTTACTACGTGCTCAACTATCGAAAAAGGATTTAAAAAGAGATATCATGATTGCTTATGCTTTATAATGTGAAAGGTATCTGGTTAAAGTGTGATGCATATTGGATTGTGGATTCAGAAGTTACAAAAGTTTATTCCATTTTTGTTTAAAGATTGCATCTTTTTCTTGATTCAATTGAATTGAATTATAAATAAAACTTCCTTCTTTTTCTCTTTTCATTTTTTGTTTGTGACAGAGTTGCCTGTAGAATATCAAAATCAAGGTGGAGTACAAATACAACAAGCACAGGGTACAACAACACCTGTTTCTACCACCCCTGTCATCACAATTTCCACTGCTGCTGCTAGTGGTCCTAGTAGTAGCAAGGTGTTTGCTAGTGTGTTTCCATCGTCGTCATCAGCTCAGCATGTTAACTCGTCTTACTCGGATATTCTACGTGCTATTGAGACCGAGCAAGTGATGGCTGTAGAGCCCATATCGCTCTCATTGTCATCTTCTCTTTACTTGTCTAATAATAGGGCAAGTTTATTCCAAGAACACACTGGTGGCCACGGCCACGGCCATGGCCAGCATTATGGTTCAGCAACAATGCAGCCAGCATTATCTGCAACTGCATTACTTCAAAAAGCAGCCCAAATGGGGTCAACAACTTCAAACAACTCGTTTCTCCGTGGCCTTGGATTGGCAATGTCACCGAGTACTTCTACACCGGAGGAGAATTCACTAGCAAGGAGGACTAATGCTCTTGGCCATGTGAAGCTAGAGAGCAATATTAATGCAGAGGTACCCGGGCTCGGGATACAACTTCATGGTCATTCAGGATTTACTGACTTGATGATGGGTCCATCCATATCTCATCAGACATCTATGATGTTCGGAAGCAAACCTCCGACTCTTGATTTTCTTGGTTTAGGAAATGGTGCTAGTGGAACTCCATCAAACGGATTTTCAGCGTTTTTAAGCTCAATGGAAGACGGATTTGGTGTTGTAGCTGAGCCTTGGGATGACCCTTCTGATAGAAAACCTGCTATGCTCTAGCTAGAGTTTAGTTGCATTAATGCAACGCCTGTACAAGGGCTTTGCTCGCGCGCTCATCACCACCTACCTACATTTCACATCTCGACACAGTGGAACGTGTAACCCGCCTGTCAGTGAAGCTCTCTATTCACATCCCCCTCAAAGTTTTTGAATTGGAGTTCAGTTTTTTGTTTGATATTTTATACATATGCAATAGTTGATAGGGATAGCTAAGTTATGTTCATAATCTTGATATTGCACCCTTTTGGTCTCTCAACCAAACATCATTATGAGATTTTAGTTTAATTAGGAGAGTATAGTAGATGGATCTAGTAGCTATTAGCTAGGTTTCTAAATTATTATGTAGTAATTATTATGTGAGAGAATAACTAAGTTCACAATGTGGATATTTCTCACTTGGGAAAATTTCTTTA</genome_strand>
        <mrna_strand>GATGACAGCTTTCAAAAATAGTCTCTTCTCTTTCAAACTCTGTGTGTTCTAATCCAAAAAAACAAAACCGCCGCCATGTATGAACATTAAAGCTCTTCTTCCCATTTTTTTCTCTTCTTCAAGAAAAAAAAAGAACTTTCTTCTTTAGGGAACACAACAATTCCCAAAAATAAGTGTAGAATTTTTCCTAGTTTTGGGAATCGTTTATTGATTTTCTGGTGTAAACTGTGAAGAGGCTGAAAGGGGAGAAAACAAAGTATTAGCTGAAAAACATATGTAAAAATCTGAAGTTTTCTAAGCTATAAATATGGCAGAGATTGAAAAATCAGCTGAAGAATCAATCATACAGCAAAATTTTCCAGTAAAGAGGAAAAGGAATCTTCCTGGAAATCCTG....................................................................................ATCCAGAAGCAGAAGTGATAGCTCTATCGCCGAGAACTCTTATGGCGACGAACCGATTTGTTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAGAATTTACAGCTTCATCGGAGAGGACACAACTTGCCATGGAAACTGCGGCAACGAACGAGTAATGAAGTGAAAAAACGTGTTTACGTTTGTCCAGAATCGTCATGCGTTCATCATGATCCTTCTAGAGCTTTAGGCGATCTCACTGGAATTAAGAAGCATTTCTGCAGAAAACATGGTGAGAAGAAGTTTAAATGTGAACGTTGCACCAAAAAAATACGCTGTTCATTCCGATTGGAAAGCACACATGAAAACTTGTGGTACTAGAGAGTATCGTTGTGATTGTGGAACTTTATTTTCCAG..................................................................................................GAGGGATAGCTTCATAACTCATAGAGCATTCTGTGATGCATTAGCTCAAGAAAGTGCAAGATCTCATCAACCATTAATGGAGGATACAAATGCTGAAGGTGATTTGAAGGTTGATGAAGCTATAAACAAAACGGTGTCGTCTTCATCTAGTCCTCCACCACAACCTTTAACTCCATCAACTAGCGTTCTTTCTCCAGTTCTGTCCATTCAAAGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCCTGTAGAATATCAAAATCAAGGTGGAGTACAAATACAACAAGCACAGGGTACAACAACACCTGTTTCTACCACCCCTGTCATCACAATTTCCACTGCTGCTGCTAGTGGTCCTAGTAGTAGCAAGGTGTTTGCTAGTGTGTTTCCATCGTCGTCATCAGCTCAGCATGTTAACTCGTCTTACTCGGATATTCTACGTGCTATTGAGACCGAGCAAGTGATGGCTGTAGAGCCCATATCGCTCTCATTGTCATCTTCTCTTTACTTGTCTAATAATAGGGCAAGTTTATTCCAAGAACACACTGGTGGCCACGGCCACGGCCATGGCCAGCATTATGGTTCAGCAACAATGCAGCCAGCATTATCTGCAACTGCATTACTTCAAAAAGCAGCCCAAATGGGGTCAACAACTTCAAACAACTCGTTTCTCCGTGGCCTTGGATTGGCAATGTCACCGAGTACTTCTACACCGGAGGAGAATTCACTAGCAAGGAGGACTAATGCTCTTGGCCATGTGAAGCTAGAGAGCAATATTAATGCAGAGGTACCCGGGCTCGGGATACAACTTCATGGTCATTCAGGATTTACTGACTTGATGATGGGTCCATCCATATCTCATCAGACATCTATGATGTTCGGAAGCAAACCTCCGACTCTTGATTTTCTTGGTTTAGGAAATGGTGCTAGTGGAACTCCATCAAACGGATTTTCAGCGTTTTTAAGCTCAATGGAAGACGGATTTGGTGTTGTAGCTGAGCCTTGGGATGACCCTTCTGATAGAAAACCTGCTATGCTCTAACTAGAGTTTAGTTGCATTAATGCAACGCCTGTACAAGGGCTTTGCTCGCGCGCTCATCACCACCTACCTACATTTCACATCTCGACACAGTGGAACGTGTAACCCGCCTGTCAGTGAAGCTCTCTATTCACATCCCCCTCAAAGTTTTTGAATTGGAGTTCAGTTTTTTGTTTGATATTTTATACATATGCAATAGTTGATAGGGATAGCTAAGTTATGTTCATAATCTTGATATTGCACCCTTTTGGTCTCTCAACCAAACATCATTATGAGATTTTAGTTTAATTAGGAGAGTATAGTAGATGGATCTAGTAGCTATTAGCTAGGTTTCTAAATTATTATGTAGTAATTATTATGTGAGAGAATAACTAAGTTCACAATGTGGATATTTCTCACTTGGGAAAATTTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730964" ref_strand="+" ref_description="SGN-E730964 [LA25DA06]">
      <seq>ccgtttgatgaagctattaacaaaacggtgtcgtcttcatctagtccaccaccacaacctttaactccatcaactagcgttctttctccagttctgtccattcaaagttcagagttgcctgtagaatatcaaaatcaaggtggagtacaaatacaacaagcacaaggtacaactacacctgtttctaccacccctgtcatcacaatttccactgctgctgctagtggtcctagtagtagcaaggtgtttgctagtgtgtttccatcgtcgtcatcagctcagcatgtgaactcgtcttactcagatattctacgtgctattgagaccgagcaagtgatggctgtagagcccatatcgctctcattgtcatcttctctttacttgtctaataatagggcaagtttattccaagaacacactggtggccacggccacggccacggccagcattatggttcagcaacaatgcagccagcattatctgcaactgcattacttcaaaaagcagcccaaatggggtcaacaacttcaaacaactcgtttctccgtggccttggattggcaatgtcaccgagtacttctacaccggaggagaattcactagcaaggaggactaatgctcttggccatgtgaagctggagagcaatattaatgcagaggtacccgggctcgggaaacaacttcatggtcattcaggatttactgacttgatgatgggtccatccatatctcatcagacatctatgatgttcggaagcaaacctccaactcttgattttcttggtttangaaatggtgcaagtggaactccatcgaacggattttcagcgtttttaagctcaatggaagatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="39215" stop="41412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39624" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39625" i_stop="40367" i_length="743">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40368" g_stop="41112" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="857" r_length="745" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E730964" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39624"/>
          <exon e_start="40368" e_stop="41112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTGATGAAGCTATAAACAAAACGGTGTCGTCTTCATCTAGTCCTCCACCACAACCTTTAACTCCATCAACTAGCGTTCTTTCTCCAGTTCTGTCCATTCAAAGTTCAGGTAAAAAAAATAATTTAAAAATAAAAATAAAGTTAATTCTACGTCCTTTTGGCATTTTTCGATACGCAAAATGAGATAAATAACGATATTCTATATTCAAAATTTCAAATAATTCAAATCACAATAACAAGTAACAAATTTTATTTTGAGATTATTATTCTTATCTCGCTTAGAAAATCGTGCTCGGGTATTGCACATGCATAATGTGCAATTTGTCAACATCGTAAAAGCCTACGAGTATGTCTACGAAAACGCTTCTCTCGTTTGAATGGAAATTTGGATTCTTCAGGGTGTGATTTTTCATGTGATGTTCTTTTTTTTTATATAGAAAAAATATATATAATTTTTTGGATTTGTCTATTAGTGTTCTTTGTTTTTTTTCTGAACCTTCGTCTTCTTGTGTGATTTTCACCATTAATTTATTACTATTCATTTAATATATAGTTTTGACCACGGGGGAAGAGATGAATAGTAAAATGGGTGTAATTAATTTTTTTATAAAAATAATGTTACTACGTGCTCAACTATCGAAAAAGGATTTAAAAAGAGATATCATGATTGCTTATGCTTTATAATGTGAAAGGTATCTGGTTAAAGTGTGATGCATATTGGATTGTGGATTCAGAAGTTACAAAAGTTTATTCCATTTTTGTTTAAAGATTGCATCTTTTTCTTGATTCAATTGAATTGAATTATAAATAAAACTTCCTTCTTTTTCTCTTTTCATTTTTTGTTTGTGACAGAGTTGCCTGTAGAATATCAAAATCAAGGTGGAGTACAAATACAACAAGCACAGGGTACAACAACACCTGTTTCTACCACCCCTGTCATCACAATTTCCACTGCTGCTGCTAGTGGTCCTAGTAGTAGCAAGGTGTTTGCTAGTGTGTTTCCATCGTCGTCATCAGCTCAGCATGTTAACTCGTCTTACTCGGATATTCTACGTGCTATTGAGACCGAGCAAGTGATGGCTGTAGAGCCCATATCGCTCTCATTGTCATCTTCTCTTTACTTGTCTAATAATAGGGCAAGTTTATTCCAAGAACACACTGGTGGCCACGGCCACGGCCATGGCCAGCATTATGGTTCAGCAACAATGCAGCCAGCATTATCTGCAACTGCATTACTTCAAAAAGCAGCCCAAATGGGGTCAACAACTTCAAACAACTCGTTTCTCCGTGGCCTTGGATTGGCAATGTCACCGAGTACTTCTACACCGGAGGAGAATTCACTAGCAAGGAGGACTAATGCTCTTGGCCATGTGAAGCTAGAGAGCAATATTAATGCAGAGGTACCCGGGCTCGGGATACAACTTCATGGTCATTCAGGATTTACTGACTTGATGATGGGTCCATCCATATCTCATCAGACATCTATGATGTTCGGAAGCAAACCTCCGACTCTTGATTTTCTTGGTTTAGGAAATGGTGCTAGTGGAACTCCATCAAACGGATTTTCAGCGTTTTTAAGCTCAATGGAAGACGGATT</genome_strand>
        <mrna_strand>CCGTTTGATGAAGCTATTAACAAAACGGTGTCGTCTTCATCTAGTCCACCACCACAACCTTTAACTCCATCAACTAGCGTTCTTTCTCCAGTTCTGTCCATTCAAAGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCCTGTAGAATATCAAAATCAAGGTGGAGTACAAATACAACAAGCACAAGGTACAACTACACCTGTTTCTACCACCCCTGTCATCACAATTTCCACTGCTGCTGCTAGTGGTCCTAGTAGTAGCAAGGTGTTTGCTAGTGTGTTTCCATCGTCGTCATCAGCTCAGCATGTGAACTCGTCTTACTCAGATATTCTACGTGCTATTGAGACCGAGCAAGTGATGGCTGTAGAGCCCATATCGCTCTCATTGTCATCTTCTCTTTACTTGTCTAATAATAGGGCAAGTTTATTCCAAGAACACACTGGTGGCCACGGCCACGGCCACGGCCAGCATTATGGTTCAGCAACAATGCAGCCAGCATTATCTGCAACTGCATTACTTCAAAAAGCAGCCCAAATGGGGTCAACAACTTCAAACAACTCGTTTCTCCGTGGCCTTGGATTGGCAATGTCACCGAGTACTTCTACACCGGAGGAGAATTCACTAGCAAGGAGGACTAATGCTCTTGGCCATGTGAAGCTGGAGAGCAATATTAATGCAGAGGTACCCGGGCTCGGGAAACAACTTCATGGTCATTCAGGATTTACTGACTTGATGATGGGTCCATCCATATCTCATCAGACATCTATGATGTTCGGAAGCAAACCTCCAACTCTTGATTTTCTTGGTTTANGAAATGGTGCAAGTGGAACTCCATCGAACGGATTTTCAGCGTTTTTAAGCTCAATGGAAGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219222" ref_strand="+" ref_description="SGN-E219222 [cLEL-11-H24](-)">
      <seq>ctacctacatttcacatctcgacacagtggaacgtgtaacccgcctgtcagtgaagcctctctattcacatccccctcaaagtttttgaattggagttcagttttttgtttgatattttatacatatgtaatagttgatagggatagctaagttatgttcataatcttgatattgcacccttttggtctctcaaccaaacatcattatgagattttagtttaattaggagagtatagtagatggatctagtagctattagctaggtttctaaattattatgtagtaaccactatgtgagagaataactaagttcacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="40934" stop="41850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41234" g_stop="41549" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="332"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E219222" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41234" e_stop="41549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTACATTTCACATCTCGACACAGTGGAACGTGTAACCCGCCTGTCAGTGAAG-CTCTCTATTCACATCCCCCTCAAAGTTTTTGAATTGGAGTTCAGTTTTTTGTTTGATATTTTATACATATGCAATAGTTGATAGGGATAGCTAAGTTATGTTCATAATCTTGATATTGCACCCTTTTGGTCTCTCAACCAAACATCATTATGAGATTTTAGTTTAATTAGGAGAGTATAGTAGATGGATCTAGTAGCTATTAGCTAGGTTTCTAAATTATTATGTAGTAATTATTATGTGAGAGAATAACTAAGTTCACA</genome_strand>
        <mrna_strand>CTACCTACATTTCACATCTCGACACAGTGGAACGTGTAACCCGCCTGTCAGTGAAGCCTCTCTATTCACATCCCCCTCAAAGTTTTTGAATTGGAGTTCAGTTTTTTGTTTGATATTTTATACATATGTAATAGTTGATAGGGATAGCTAAGTTATGTTCATAATCTTGATATTGCACCCTTTTGGTCTCTCAACCAAACATCATTATGAGATTTTAGTTTAATTAGGAGAGTATAGTAGATGGATCTAGTAGCTATTAGCTAGGTTTCTAAATTATTATGTAGTAACCACTATGTGAGAGAATAACTAAGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539845" ref_strand="+" ref_description="SGN-E539845 [TUS-59-N1]">
      <seq>ttttgcagcaacactccagcacaccctcaaatgaacttgaaaatgaaaactatacaccttctcgggcaaagctcaatcccaaaaataacgcgttctgtaatttgagctacttttaaccttagagaaaacagagcagccatgctctttcattcatggagaaaatctctatgcaacagaggtaacttcttccctttaatccaactgtttcctttatcgcatagccatgtatctatatttcattcttgcgcttctgttccctctaaatatccttcgtttcgcaaaaagccatcggtttctaagaagcgtaaagttgtaatttttagggaattcagagatgtgaatagtttaaatgacgccgtttgtgtttttcatcgattggtccgtaaagaaccagttccttctgttgtagagttagcaaaattgttaagagtgatgattaatatgaaagaatattctgttgttatttcgtttttcggagagatgaggaagttagggattccctttgatgagtatatcttgactattgtgattaattctttttgcttgctgggttgtgctgaaaatggtttttcgatattgggtgtttttttcaagagtggggttcagtttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="44534" stop="45746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44834" g_stop="45446" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E539845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44834" e_stop="45446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGCAACACTCCAGCACACCCTCAAATGAACTTGAAAATGAAAACTATACACCTTCTCGGGCAAAGCTCAATCCCAAAAATAACGCGTTCTGTAATTTGAGCTACTTTTAACCTTAGAGAAAACAGAGCAGCCATGCTCTTTCATTCATGGAGAAAATCTCTATGCAACAGAGGTAACTTCTTCCCTTTAATCCAACTGTTTCCTTTATCGCATAGCCATGTATCTATATTTCATTCTTGCGCTTCTGTTCCCTCTAAATATCCTTCGTTTCGCAAAAAGCCATCGGTTTCTAAGAAGCGTAAAGTTGTAATTTTTAGGGAATTCAGAGATGTGAATAGTTTAAATGACGCCGTTTGTGTTTTTCATCGATTGGTCCGTAAAGAACCAGTTCCTTCTGTTGTAGAGTTAGCAAAATTGTTAAGAGTGATGATTAATATGAAAGAATATTCTGTTGTTATTTCGTTTTTCGGAGAGATGAGGAAGTTAGGGATTCCCTTTGATGAGTATATCTTGACTATTGTGATTAATTCTTTTTGCTTGCTGGGTTGTGCTGAAAATGGTTTTTCGATATTGGGTGTTTTTTTCAAGAGTGGTGTTCAGTTTAATG</genome_strand>
        <mrna_strand>TTTTGCAGCAACACTCCAGCACACCCTCAAATGAACTTGAAAATGAAAACTATACACCTTCTCGGGCAAAGCTCAATCCCAAAAATAACGCGTTCTGTAATTTGAGCTACTTTTAACCTTAGAGAAAACAGAGCAGCCATGCTCTTTCATTCATGGAGAAAATCTCTATGCAACAGAGGTAACTTCTTCCCTTTAATCCAACTGTTTCCTTTATCGCATAGCCATGTATCTATATTTCATTCTTGCGCTTCTGTTCCCTCTAAATATCCTTCGTTTCGCAAAAAGCCATCGGTTTCTAAGAAGCGTAAAGTTGTAATTTTTAGGGAATTCAGAGATGTGAATAGTTTAAATGACGCCGTTTGTGTTTTTCATCGATTGGTCCGTAAAGAACCAGTTCCTTCTGTTGTAGAGTTAGCAAAATTGTTAAGAGTGATGATTAATATGAAAGAATATTCTGTTGTTATTTCGTTTTTCGGAGAGATGAGGAAGTTAGGGATTCCCTTTGATGAGTATATCTTGACTATTGTGATTAATTCTTTTTGCTTGCTGGGTTGTGCTGAAAATGGTTTTTCGATATTGGGTGTTTTTTTCAAGAGTGGGGTTCAGTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282120" ref_strand="+" ref_description="SGN-E282120 [cLES-4-K9]">
      <seq>tttgcagcaacactccagcacaccctcaaatgaacttgaaaatgaaaactatacaccttctcgggcaaagctcaatcccaaaaataacgcgttctgtaatttgagctacttttaaccttagagaaaacagagcagccatgctctttcattcatggagaaaatctctatgcaacagaggtaacttcttccctttaatccaactgtttcctttatcgcatagccatgtatctatatttcattcttgcgcttctgttccctctaaatatccttcgtttcgcaaaaagccatcggtttctaagaagcgtaaagttgtaatttttagggaattcagagatgtgaatagtttaaatgacgccgtttgtgtttttcatcgattggtccgtaaagaaccagttccttctgttgtagagttagcaaaattgttaagagtgatgattaatatgaaagaatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="44535" stop="45589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44835" g_stop="45289" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E282120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44835" e_stop="45289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCAACACTCCAGCACACCCTCAAATGAACTTGAAAATGAAAACTATACACCTTCTCGGGCAAAGCTCAATCCCAAAAATAACGCGTTCTGTAATTTGAGCTACTTTTAACCTTAGAGAAAACAGAGCAGCCATGCTCTTTCATTCATGGAGAAAATCTCTATGCAACAGAGGTAACTTCTTCCCTTTAATCCAACTGTTTCCTTTATCGCATAGCCATGTATCTATATTTCATTCTTGCGCTTCTGTTCCCTCTAAATATCCTTCGTTTCGCAAAAAGCCATCGGTTTCTAAGAAGCGTAAAGTTGTAATTTTTAGGGAATTCAGAGATGTGAATAGTTTAAATGACGCCGTTTGTGTTTTTCATCGATTGGTCCGTAAAGAACCAGTTCCTTCTGTTGTAGAGTTAGCAAAATTGTTAAGAGTGATGATTAATATGAAAGAATATTCT</genome_strand>
        <mrna_strand>TTTGCAGCAACACTCCAGCACACCCTCAAATGAACTTGAAAATGAAAACTATACACCTTCTCGGGCAAAGCTCAATCCCAAAAATAACGCGTTCTGTAATTTGAGCTACTTTTAACCTTAGAGAAAACAGAGCAGCCATGCTCTTTCATTCATGGAGAAAATCTCTATGCAACAGAGGTAACTTCTTCCCTTTAATCCAACTGTTTCCTTTATCGCATAGCCATGTATCTATATTTCATTCTTGCGCTTCTGTTCCCTCTAAATATCCTTCGTTTCGCAAAAAGCCATCGGTTTCTAAGAAGCGTAAAGTTGTAATTTTTAGGGAATTCAGAGATGTGAATAGTTTAAATGACGCCGTTTGTGTTTTTCATCGATTGGTCCGTAAAGAACCAGTTCCTTCTGTTGTAGAGTTAGCAAAATTGTTAAGAGTGATGATTAATATGAAAGAATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298203" ref_strand="+" ref_description="SGN-E298203 [cLEW-9-M21]">
      <seq>tttgatctcttccgccggctgactttttaaagtagtttagttgattatcaactcactatttattcattttttcaacatcgattccccaaaatcacaattttaatctcctccgccgtggaacgccactttttctcattttccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagattttacgagtttgctatttcttcccgtaacggtccttttcaaggtcatatactcagtgatttaccttccattgaagttcgaaaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48606" stop="49486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48906" g_stop="49186" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E298203" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48906" e_stop="49186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTCTTCCGCCGGCTGACTTTTTAAAGTAGTTTAGTTTATTATCAACTCACTATTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACT</genome_strand>
        <mrna_strand>TTTGATCTCTTCCGCCGGCTGACTTTTTAAAGTAGTTTAGTTGATTATCAACTCACTATTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTTCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGATTTTACGAGTTTGCTATTTCTTCCCGTAACGGTCCTTTTCAAGGTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746106" ref_strand="+" ref_description="SGN-E746106 [GI|47105296]">
      <seq>gattttattcattttttcaacatcgattccccaaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacgggaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacataggaagattgcaaaccaggcttttaacatggaggttgttaaggcttgggtaccggatattgtgactagtgttatcaaggcattgaagaaatgggaaaaggaaaatgaagagaaggaagaatttgaaatagatgtcttcaaagaattgaatgatctctcagctgaggttatatctagaacagcttttgggagtagctttgaagaggggaaacgcatatttgagttgcaagagcaacaaatatctcttactttgcaggcaatacgaagcgtctaccttcctggatttagcattgcatcaagagtggcaagataaagctcgagaagaagttttccgaatttgtaagggtaacaaccttccaagtgcagagaatctgaatgatttcaagattgtgacaatgatactcaatgagacattgagactctacccaccggtagtcgcattgacaagaggaacttctaaagacatcaagttgggagaccttgaaattcctgcgaatactcaattttatgtggccctagctgctgtgcatcatgacactgggatatgggggaaagatgcactggaattcaaccctcagagatttgtcgagtctcgtaagcatttggcttcatttttcccttttgcattaggtccaagagtttgtgttgggcaaaacttagccatggttgaagccaaaattatcctggcaatgatagttaagaatttctcccttgcattatcaccttcatatgttcatgctccaaccatgcgtcttactatgcagccccagtatggtgctcctgtcctctttaggaagatttaagtttaaatgtagctactcgtcactgagtgatgagtttgtccattgacgatatatcttagcttcaattatgaacaagtttggatcgattatatgaatcattcattctgctagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48664" stop="52394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48961" g_stop="49566" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50456" g_stop="50700" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="852" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50701" i_stop="51073" i_length="373">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51074" g_stop="51174" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="953" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51175" i_stop="51571" i_length="397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51572" g_stop="52102" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1484" r_length="531" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1485" polyA_stop="1499"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E746106" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1483</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48961" e_stop="49566"/>
          <exon e_start="50456" e_stop="50700"/>
          <exon e_start="51074" e_stop="51174"/>
          <exon e_start="51572" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGG-ACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAGGTGATCCATTTATCTTCACTAAAACCCATTTGGTTAAGTTTTTTTTTTTTTTTTTGTCTTTTAGAGAAACAAAATGTCAATGAAGTTTTCCTGAAAATGCATTTAAAAAAGAAAAATTACATAAATTTCACTAGTTTAGGCTTTAATTACTTAGATACATTCTAGTTTGCGATATGTATCATATTAGATTGTGGTGTGTTAAGAGAATAAATGAGGTCAAATTTGCTCTAGATACATTGAATTCAAGTGGATTCACATGTATTTGAAATACCTAACAAATGCTGCTTGTCTGATTTATGGATTGAAAGAACCTAATAGCTTTAGCCTAAAAGCTGGATTGTGTTGTAAAAATCCACGTAATATGTATAAATAATTATTCAGAAAATATAAACTCAAAATTCTTGCCCTCTCCTCCCTCTAACCATAAGATTCTGTGTATTTTAGGCATGTTATATCAGTTTAGCTAACATATCAGAAATCTTATTCTTTTTGTCTTAGATTGGCTATTTGATCAAAATTTTCCATATGAAAAATAGTGGTAAACAGCAACAACTTCTATAAACTATAAATATGTTCTCCGAACACTAAGTCCTTCAAGAATAGGCTAGCTTTGTCTCTCAATTACCTATCACGCTCTTTCCTCGATGAAATCTCAATGTGTATTTAGTCGTTAACTTGTTTTACATGAAATTCGTGTATTGCCTACTCCATGGCATTATACCTTCTTCCACCTATTCATCATTGAGCACACTATTTTTACTTTGTATTGATTTCGAATTTGTATGACTAGAACTTGATCTTCTCATTACTGTACTATAAAGTAGCACCTATACCTATACTTATAAGTCAAAGCTTTTTTTTATTTTACTAAAGTTTTGATGAATGACAGGCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAGGTAAGTGATCATATAAGCTTTGTTGTGTTGAACTAATTTGGCAATTGTCAAATGAGTATTTAAGCATGAATGCTTTAATTTATTCATCAATTTAATGGATAAGAGATCTGTTAATAAATTAACAGGTATTTGCCCACGAAAAATAACATGATGAGATGGAGAATAGAGAAAGAAACTCGAGAGTCAGTAAGGAGGCTGATTGAGAGTAGTAAAGGGAGAGAAAATTCTAAAAGTCTTCTTAGTTTGCTAATCTCTGCTAGTGAAGAAGAACACGGATTTGGGATGGAAGAAGTTATTAATGAATGCAAGACATTTTACTTTGCTGGGAAGGAAACTACTTCTGTCTTATTAACTTGGACACTTCTTCTTCTAGCATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAGTTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATTGTAAGTTCAATTCTTTATCTATTTGTTCTGTTTCTCAACACATTAATTGAGGGTTGGCAACTCAACTCATGAGCTAGCTTTTGGGGTTCATTTGGGTTTAAGTTTCATTTCTTTTAACATGGTATCAAAGTCGCAGTCATCCCAATTATTGATTTATCCAACGTTTGGCTCCATGTTATGTTGTCTATGTTCTGAGTGGGCGTAGTGTCCATTCAAGCATGCTATGTGTGTTGAGTGTCCCAACATTATTGCAGGAGTAAATGTTCTTTTGGTAATCCTCACCTCATGAGTTTACTTTTAGGATTGCATTAGGCTCATTGTTTATTTCACTTTTCAAGTGGAAGTTCCTAACGTGGGTGACATATTGCAAATTTTACTTATGTTTGTTCTCTAATAGGTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</genome_strand>
        <mrna_strand>GATTTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGAACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAG.....................................................................................................................................................................................................................................................................................................................................................................................CATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAATTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTGGCCCTAGCTGCTGTGCATCATGACACTGGGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATTATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCGTCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322681" ref_strand="+" ref_description="SGN-E322681 [cTOB-26-D17]">
      <seq>ccaaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacataggaagattgcaaaccaggcttttaacatggaggttgttaaggcttgggtaccggatattgtgactagtgttatcaaggcattgaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48691" stop="50805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48991" g_stop="49566" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50456" g_stop="50505" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="626" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E322681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48991" e_stop="49566"/>
          <exon e_start="50456" e_stop="50505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAGGTGATCCATTTATCTTCACTAAAACCCATTTGGTTAAGTTTTTTTTTTTTTTTTTGTCTTTTAGAGAAACAAAATGTCAATGAAGTTTTCCTGAAAATGCATTTAAAAAAGAAAAATTACATAAATTTCACTAGTTTAGGCTTTAATTACTTAGATACATTCTAGTTTGCGATATGTATCATATTAGATTGTGGTGTGTTAAGAGAATAAATGAGGTCAAATTTGCTCTAGATACATTGAATTCAAGTGGATTCACATGTATTTGAAATACCTAACAAATGCTGCTTGTCTGATTTATGGATTGAAAGAACCTAATAGCTTTAGCCTAAAAGCTGGATTGTGTTGTAAAAATCCACGTAATATGTATAAATAATTATTCAGAAAATATAAACTCAAAATTCTTGCCCTCTCCTCCCTCTAACCATAAGATTCTGTGTATTTTAGGCATGTTATATCAGTTTAGCTAACATATCAGAAATCTTATTCTTTTTGTCTTAGATTGGCTATTTGATCAAAATTTTCCATATGAAAAATAGTGGTAAACAGCAACAACTTCTATAAACTATAAATATGTTCTCCGAACACTAAGTCCTTCAAGAATAGGCTAGCTTTGTCTCTCAATTACCTATCACGCTCTTTCCTCGATGAAATCTCAATGTGTATTTAGTCGTTAACTTGTTTTACATGAAATTCGTGTATTGCCTACTCCATGGCATTATACCTTCTTCCACCTATTCATCATTGAGCACACTATTTTTACTTTGTATTGATTTCGAATTTGTATGACTAGAACTTGATCTTCTCATTACTGTACTATAAAGTAGCACCTATACCTATACTTATAAGTCAAAGCTTTTTTTTATTTTACTAAAGTTTTGATGAATGACAGGCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATG</genome_strand>
        <mrna_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322475" ref_strand="+" ref_description="SGN-E322475 [cTOB-26-E20]">
      <seq>ccaaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacatangaagattgcaaaccangcttttaacatggaggttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48691" stop="49863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48991" g_stop="49563" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E322475" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48991" e_stop="49563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTT</genome_strand>
        <mrna_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATANGAAGATTGCAAACCANGCTTTTAACATGGAGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322649" ref_strand="+" ref_description="SGN-E322649 [cTOB-26-E18]">
      <seq>ccaaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacataggaagattgcaaaccangcttttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48691" stop="49853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48991" g_stop="49553" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E322649" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48991" e_stop="49553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACAT</genome_strand>
        <mrna_strand>CCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCANGCTTTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322435" ref_strand="+" ref_description="SGN-E322435 [cTOB-26-E17]">
      <seq>caaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagtgcatatactcagtgatttaccttccattgaaggtcgaacaacacttcatgaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgagtcgaaatcaattccgttcgatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagaattttttgtggtggttcgggtcgaaacccccgattggctatttctgacccggatataattaaagggcttttcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48692" stop="49733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48992" g_stop="49433" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E322435" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48992" e_stop="49433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCG-AAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAA</genome_strand>
        <mrna_strand>CAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTGCATATACTCAGTGATTTACCTTCCATTGAAGGTCGAACAACACTTCATGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAGTCGAAATCAATTCCGTTCGATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGAATTTTTTGTGGTGGTTCGGGTCGAAACCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211911" ref_strand="+" ref_description="SGN-E211911 [cLEC-66-O15]">
      <seq>aaaatcacaattttaatctcctccgccgtggaacgccactttttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48693" stop="49824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48993" g_stop="49524" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E211911" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48993" e_stop="49524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACAT</genome_strand>
        <mrna_strand>AAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302171" ref_strand="+" ref_description="SGN-E302171 [cLEW-19-J16]">
      <seq>tttctcatttcccggctgccggaccaccgggaaactgaaattcttctccgatgtatctcacagtttttacgattttgctatttcttcccgtaacgttccttttcaagttcatatactcagtgatttaccttccattgaagttcgaaaaacacttcaggaagcaaggaatcagaggtcccggctaccgtttgatctacggaaacacagaggaaatcaaacagaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaagcgttgttggtttgcgaggtgaacaatgggctttacatatgaagattgcaaaccaggcttttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48734" stop="49853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49034" g_stop="49553" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E302171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49034" e_stop="49553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACAT</genome_strand>
        <mrna_strand>TTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAAGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATATGAAGATTGCAAACCAGGCTTTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374300" ref_strand="+" ref_description="SGN-E374300 [TUS-33-J14]">
      <seq>agaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacataggaagattgcaaaccaggcttttaacatggaggttgttaaggcttgggtaccggatattgtgactagtgttatcaaggcattgaagaaatgggaaaaggaaaatgaagagaaggaagaatttgaaatagatgtcttcaaagaattgaatgatctctcagctgaggttatatctagaacagcttttgggagtagctttgaagaggggaaacgcatatttgagttgcaagagcaacaaatatctcttactttgcaggcaatacgaagcgtctaccttcctggatttaggtatttgcccacgaaaaataacatgatgagatggagaatagagaaagaaactcgagagtcagtaaggaggctgattgagagtagtaaagggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48953" stop="51218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49253" g_stop="49566" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50456" g_stop="50700" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="559" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50701" i_stop="50825" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50826" g_stop="50918" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="652" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E374300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49253" e_stop="49566"/>
          <exon e_start="50456" e_stop="50700"/>
          <exon e_start="50826" e_stop="50918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAGGTGATCCATTTATCTTCACTAAAACCCATTTGGTTAAGTTTTTTTTTTTTTTTTTGTCTTTTAGAGAAACAAAATGTCAATGAAGTTTTCCTGAAAATGCATTTAAAAAAGAAAAATTACATAAATTTCACTAGTTTAGGCTTTAATTACTTAGATACATTCTAGTTTGCGATATGTATCATATTAGATTGTGGTGTGTTAAGAGAATAAATGAGGTCAAATTTGCTCTAGATACATTGAATTCAAGTGGATTCACATGTATTTGAAATACCTAACAAATGCTGCTTGTCTGATTTATGGATTGAAAGAACCTAATAGCTTTAGCCTAAAAGCTGGATTGTGTTGTAAAAATCCACGTAATATGTATAAATAATTATTCAGAAAATATAAACTCAAAATTCTTGCCCTCTCCTCCCTCTAACCATAAGATTCTGTGTATTTTAGGCATGTTATATCAGTTTAGCTAACATATCAGAAATCTTATTCTTTTTGTCTTAGATTGGCTATTTGATCAAAATTTTCCATATGAAAAATAGTGGTAAACAGCAACAACTTCTATAAACTATAAATATGTTCTCCGAACACTAAGTCCTTCAAGAATAGGCTAGCTTTGTCTCTCAATTACCTATCACGCTCTTTCCTCGATGAAATCTCAATGTGTATTTAGTCGTTAACTTGTTTTACATGAAATTCGTGTATTGCCTACTCCATGGCATTATACCTTCTTCCACCTATTCATCATTGAGCACACTATTTTTACTTTGTATTGATTTCGAATTTGTATGACTAGAACTTGATCTTCTCATTACTGTACTATAAAGTAGCACCTATACCTATACTTATAAGTCAAAGCTTTTTTTTATTTTACTAAAGTTTTGATGAATGACAGGCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAGGTAAGTGATCATATAAGCTTTGTTGTGTTGAACTAATTTGGCAATTGTCAAATGAGTATTTAAGCATGAATGCTTTAATTTATTCATCAATTTAATGGATAAGAGATCTGTTAATAAATTAACAGGTATTTGCCCACGAAAAATAACATGATGAGATGGAGAATAGAGAAAGAAACTCGAGAGTCAGTAAGGAGGCTGATTGAGAGTAGTAAAGGGAG</genome_strand>
        <mrna_strand>AGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAG.............................................................................................................................GTATTTGCCCACGAAAAATAACATGATGAGATGGAGAATAGAGAAAGAAACTCGAGAGTCAGTAAGGAGGCTGATTGAGAGTAGTAAAGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305732" ref_strand="+" ref_description="SGN-E305732 [cLEX-14-O19]">
      <seq>agaagattagtgaagctgaatcgaaatcaattccgttcaatcacaacatactgcatcgaattgctcctcattactacaactggtccgccgtttacggcaagacttttttgtggtggttcgggtcgaagccccgattggctatttctgacccggatataattaaagggcttttcataaataaagcagtggataaagttgaatttgatccacaaactaagcagttgtttggacaaggcgttgttggtttgcgaggtgaacaatgggctttacataggaagattgcaaaccaggcttttaacatggaggttgttaaggcttgggtaccggatattgtgactagtgttatcaaggcattgaagaaatgggaaaaggaaaatgaagagaaggaagaatttgaaatagatgtcttcaaagaattgaatgatctctcagctgaggttatatctagaacagcttttgggagtagctttgaagaggggaaacgcatatttgagttgcaagagcaacaaatatctcttactttgcaggcaatacgaagcgtctaccttcctggatttaggtatttgcccacgaaaaataacatgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="48953" stop="51155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49253" g_stop="49566" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50456" g_stop="50700" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="559" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50701" i_stop="50825" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50826" g_stop="50855" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="589" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E305732" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49253" e_stop="49566"/>
          <exon e_start="50456" e_stop="50700"/>
          <exon e_start="50826" e_stop="50855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAGGTGATCCATTTATCTTCACTAAAACCCATTTGGTTAAGTTTTTTTTTTTTTTTTTGTCTTTTAGAGAAACAAAATGTCAATGAAGTTTTCCTGAAAATGCATTTAAAAAAGAAAAATTACATAAATTTCACTAGTTTAGGCTTTAATTACTTAGATACATTCTAGTTTGCGATATGTATCATATTAGATTGTGGTGTGTTAAGAGAATAAATGAGGTCAAATTTGCTCTAGATACATTGAATTCAAGTGGATTCACATGTATTTGAAATACCTAACAAATGCTGCTTGTCTGATTTATGGATTGAAAGAACCTAATAGCTTTAGCCTAAAAGCTGGATTGTGTTGTAAAAATCCACGTAATATGTATAAATAATTATTCAGAAAATATAAACTCAAAATTCTTGCCCTCTCCTCCCTCTAACCATAAGATTCTGTGTATTTTAGGCATGTTATATCAGTTTAGCTAACATATCAGAAATCTTATTCTTTTTGTCTTAGATTGGCTATTTGATCAAAATTTTCCATATGAAAAATAGTGGTAAACAGCAACAACTTCTATAAACTATAAATATGTTCTCCGAACACTAAGTCCTTCAAGAATAGGCTAGCTTTGTCTCTCAATTACCTATCACGCTCTTTCCTCGATGAAATCTCAATGTGTATTTAGTCGTTAACTTGTTTTACATGAAATTCGTGTATTGCCTACTCCATGGCATTATACCTTCTTCCACCTATTCATCATTGAGCACACTATTTTTACTTTGTATTGATTTCGAATTTGTATGACTAGAACTTGATCTTCTCATTACTGTACTATAAAGTAGCACCTATACCTATACTTATAAGTCAAAGCTTTTTTTTATTTTACTAAAGTTTTGATGAATGACAGGCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAGGTAAGTGATCATATAAGCTTTGTTGTGTTGAACTAATTTGGCAATTGTCAAATGAGTATTTAAGCATGAATGCTTTAATTTATTCATCAATTTAATGGATAAGAGATCTGTTAATAAATTAACAGGTATTTGCCCACGAAAAATAACATGATGAG</genome_strand>
        <mrna_strand>AGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGCAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAG.............................................................................................................................GTATTTGCCCACGAAAAATAACATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374299" ref_strand="+" ref_description="SGN-E374299 [TUS-33-J14](-)">
      <seq>cattttactttgctgggaaggaaactacttctgtcttattaacttggacacttcttcttctagcattgcatcaagagtggcaagataaagctcgagaagaagttttccgagtttgtaagggtaacaaccttccaagtgcagagaatctgaatgatttcaagattgtgacaatgatactcaatgagacattgagactctacccaccggtagtcgcattgacaagaggaacttctaaagacatcaagttgggagaccttgaaattcctgcgaatactcaattttatgtggcactagctgctgtgcatcatgacactgggatatgggggaaagatgcactggaattcaaccctcagagatttgtcgagtctcgtaagcatttggcttcatttttcccttttgcattaggtccaagagtttgtgttgggcaaaacttagccatggttgaagccaaaatcatcctggcaatgatagttaagaatttctcccttgcattatcaccttcatatgttcatgctccaaccatgcgtcttactatgcagccccagtatggtgctcctgtcctctttaggaagatttaagtttaaatgtagctactcgtcactgagtgatgagtttgtccattgacgatatatcttagcttcaattatgaacaagtttggatcgattatatgaatcattcattctgctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="50711" stop="52397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51011" g_stop="51174" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51175" i_stop="51571" i_length="397">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51572" g_stop="52102" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="695" r_length="531" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E374299" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51011" e_stop="51174"/>
          <exon e_start="51572" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTACTTTGCTGGGAAGGAAACTACTTCTGTCTTATTAACTTGGACACTTCTTCTTCTAGCATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAGTTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATTGTAAGTTCAATTCTTTATCTATTTGTTCTGTTTCTCAACACATTAATTGAGGGTTGGCAACTCAACTCATGAGCTAGCTTTTGGGGTTCATTTGGGTTTAAGTTTCATTTCTTTTAACATGGTATCAAAGTCGCAGTCATCCCAATTATTGATTTATCCAACGTTTGGCTCCATGTTATGTTGTCTATGTTCTGAGTGGGCGTAGTGTCCATTCAAGCATGCTATGTGTGTTGAGTGTCCCAACATTATTGCAGGAGTAAATGTTCTTTTGGTAATCCTCACCTCATGAGTTTACTTTTAGGATTGCATTAGGCTCATTGTTTATTTCACTTTTCAAGTGGAAGTTCCTAACGTGGGTGACATATTGCAAATTTTACTTATGTTTGTTCTCTAATAGGTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</genome_strand>
        <mrna_strand>CATTTTACTTTGCTGGGAAGGAAACTACTTCTGTCTTATTAACTTGGACACTTCTTCTTCTAGCATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAGTTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTGGCACTAGCTGCTGTGCATCATGACACTGGGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCGTCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548287" ref_strand="+" ref_description="SGN-E548287 [TUS-59-N1](-)">
      <seq>agtttgtaaagggtaacaaccttccaagtgcagagaatctgaatgatttcaagattgtgacaatgatactcaatgagacattgagactctacccaccggtagtcgcattgacaagaggaacttctaaagacatcaagttgggagaccttgaaattcctgcgaatactcaattttatgttgcactagctgctgtgcatcatgacactgagatatgggggaaagatgcactggaattcaaccctcagagatttgtcgagtctcgtaagcatttggcttcatttttcccttttgcattaggtccaagagtttgtgttgggcaaaacttagccatggttgaagccaaaatcatcctggcaatgatagttaagaatttctcccttgcattatcaccttcatatgttcatgctccaaccatgcatcttactatgcagccccagtatggtgctcctgtcctctttaggaagatttaagtttaaatgtagctactcgtcactgagtgatgagtttgtccattgacgatatatcttagcttcaattatgaacaagtttggatcgattatatgaatcattcattctgctctattcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="50820" stop="52401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51120" g_stop="51174" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51175" i_stop="51571" i_length="397">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51572" g_stop="52102" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="587" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="617"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E548287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51120" e_stop="51174"/>
          <exon e_start="51572" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTAA-GGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATTGTAAGTTCAATTCTTTATCTATTTGTTCTGTTTCTCAACACATTAATTGAGGGTTGGCAACTCAACTCATGAGCTAGCTTTTGGGGTTCATTTGGGTTTAAGTTTCATTTCTTTTAACATGGTATCAAAGTCGCAGTCATCCCAATTATTGATTTATCCAACGTTTGGCTCCATGTTATGTTGTCTATGTTCTGAGTGGGCGTAGTGTCCATTCAAGCATGCTATGTGTGTTGAGTGTCCCAACATTATTGCAGGAGTAAATGTTCTTTTGGTAATCCTCACCTCATGAGTTTACTTTTAGGATTGCATTAGGCTCATTGTTTATTTCACTTTTCAAGTGGAAGTTCCTAACGTGGGTGACATATTGCAAATTTTACTTATGTTTGTTCTCTAATAGGTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</genome_strand>
        <mrna_strand>AGTTTGTAAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226874" ref_strand="+" ref_description="SGN-E226874 [cLEL-26-O20](-)">
      <seq>ctaaagacatcaagttgggagaccttgaaattcctgcgaatactcaattttatgtggcactagctgctgtgcatcatgacactgggatatgggggaaagatgcactggaattcaaccctcagagatttgtcgagtctcgtaagcatttggcttcatttttcccttttgcattaggtccaagagtttgtgttgggcaaaacttagccatggttgaagccaaaatcatcctggcaatgatagttaagaatttctcccttgcattatcaccttcatatgttcatgctccaaccatgcgtcttactatgcagccccagtatggtgctcctgtcctctttaggaagatttaagtttaaatgtagctactcgtcactgagtgatgagtttgtccattgacgatatatcttagcttcaattatgaacaagtttggatcgattatatgaatcattcattctgctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="51339" stop="52394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51639" g_stop="52102" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="475"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E226874" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51639" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</genome_strand>
        <mrna_strand>CTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTGGCACTAGCTGCTGTGCATCATGACACTGGGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCGTCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226771" ref_strand="+" ref_description="SGN-E226771 [cLEL-26-O20](-)">
      <seq>ctaaagacatcaagttgggagaccttgaaattcctgcgaatactcaattttatgtggcactagctgctgtgcatcatgacactgggatatgggggaaagatgcactggaattcaaccctcagagatttgtcgagtctcgtaagcatttggcttcatttttcccttttgcattaggtccaagagtttgtgttgggcaaaacttagccatggttgaagccaaaatcatcctggcaatgatagttaagaatttctcccttgcattatcaccttcatatgttcatgctccaaccatgcgtcttactatgcagccccagtatggtgctcctgtcctctttaggaagatttaagtttaaatgtagctactcgtcactgagtgatgagtttgtccattgacgatatatcttagcttcaattatgaacaagtttggatcgattatatgaatcattcattctgctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="51339" stop="52397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51639" g_stop="52102" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="475"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E226771" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51639" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</genome_strand>
        <mrna_strand>CTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTGGCACTAGCTGCTGTGCATCATGACACTGGGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCGTCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363236" ref_strand="+" ref_description="SGN-E363236 [cLPP-19-J14]">
      <seq>agaagtttccattgggtatatatagggttttgttggtgaaatgaaaagttttttgagttgaacatttgagctccaactcaacagaacttatttgaagaagatttgaatttttttgatttttttttgattttttttggattgaaaaggtggttatgttgttttcaagcgaagaccaaattgatgcgtattaacagacgttctgggagtactgatatttcctgtgttctgtgatactggttgtgtttctcttataaacgagtgcgagcaaatttgttgtagttgataaaccaatatgcctagtaattatctttttagagtaggtggtgcattgaggcagggaattaggaaatccatttctgggcaagaaagggggcttcaattggtggagattttttctgaagagcggttgttgttggggaagtccttctgttctgtgccatctgcaagattgtctgacctgcatgtgtttgtaaggtctggagcttttgctgcagcacagacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="53361" stop="55686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53661" g_stop="53806" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53807" i_stop="55027" i_length="1221">
            <donor d_prob="0.281" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55028" g_stop="55386" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="506" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E363236" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53661" e_stop="53806"/>
          <exon e_start="55028" e_stop="55386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTTCCATTGGGTATATATAGGGTTTTGTTGGTGAAATGAAAAGTTTTTTGAGTTGAACATTTTAGCTCCAACTCAATAGAACTTATTTGAAGAAGATTGGAATTTTTTTGATTTTTTTTTTGATTTTTTTGGATTGAAAAGGTGCATTCTTGAAACCCTTTTTCTTGTTTTGTTTTGTAGTATTGTGGCTTCCAAATTTTTTTTCTGGGTGATTTGGATTGAAAAGGTGCAATCTTGAAACCCCTTTTATTGTTTTCTTTTGTTTTTGGGTGTTTTTGTTATTGAATGTTTGTTCGAAGTCGAATAAGAAATCTTAACTGTTTAGAATTAGAAATTTGGGATTTGATATTCAAACAGGAATAAATTTTCTATTTTTATAATTAAAGGGCTTTGATGTTTTGAGTTCTTGTGATTCTTCATAAGCTCAAATCACTGAAAATGTTCTATTGTAAAACCCCTTTATTGTTTAAGAGACCTAAATTGTTTAATGGAATTTATAATCAGATTCCTTTAGGAAATGATATGTCTAGGCTTTTTTTAGTCAAACTAGATTTCCTACAACTACAGATAGGGACGTTACAGCTATGTTTCCTGTAACGGAAAATTGTGGAGATTTATGAGATTCTGAATAAAATTATCTTTCCTTTAGTCTGTTTGGAGCTTTGTTATGAGGTATTATATTCTGTGCTTTGATTCTTTATAAGGTATTGTGTTTGTTTCTTCGATTTCTGTTATTATATGTTAGTTTCATGTAGTTGATTACAGTATTATTTTGTTGTAGTATTGCTCTGCTACTATCTGTTCTGTTATTTCTGTTGGCTGTTTTTATTTTGAGCCGAGTTTCTATTGGAAACAACCTTCTCTGAGGTAGAGGTCAGGTGTGTGTATGTCTTTCCCAGACCTCACTTTGCGGGACTACATTGAGTATGTTGGTGTTGTTTTTGTATTATTGTGTATGTTTGCTTTTCAATGAGGATGGCCTATTGAGTGACAAGCTTAGGCATTTATTTTATTTTCCCACTTCTATGGGTTCTAGGCTTCTAGTCAACTATATGTCTTTTTGGTGCAGATAATGGACTAGTTTTTTCATGTGGTTTTAGTTTGAAATTATTTTTTAGTAATTATGGTCTTGAGCCGGGATGGTCCACGAGCATGGATTTTGGGTAACTACCCATCAAGGCCGAGATAGATGTGCTCACACTTTATTTCTTAGAGAATTCTTGAGTTTTTTGCTTATTAAGATGGTACCGTAAGCAACCATTGTTTGACATGAAATATAGTGGATATAACAATGTCCTACCTATATCCTCTACTATATTTTTGTTACTTTTTCCTCCTAATATTGGTTACCCTGTTATGCAGGTGGTTATGTTGTTTTCAAGCGAAGACCAAATTGATGTGTATTAACAGACGTT-TGGGAGTACTGATATTTCCTGTGTTCTGTGATACTGGTTGTGTTTCTCTTATAAACGAGTGCGAGCAAATTTGTTGTAGTTGATAAACCAATATGCCTAGTAATTATCTTTTTAGAGTAGGTGGTGCATTGTGTCAGGGAATTAGGAAATCCATTTCTGGGCAAGAAAGGGGGCTTCAATTGGTGGAGATTTTTTCTGAAGAGCGGTTGTTGTTCGGGAAGTCCTTCTGTTCTGTGCCATCTGCAGGATTGTCTGACCTGCATGTGTTTGTAAGGCCTGGAGCTTTTGCTGCAGCACCGACAAATT</genome_strand>
        <mrna_strand>AGAAGTTTCCATTGGGTATATATAGGGTTTTGTTGGTGAAATGAAAAGTTTTTTGAGTTGAACATTTGAGCTCCAACTCAACAGAACTTATTTGAAGAAGATTTGAATTTTTTTGATTTTTTTTTGATTTTTTTTGGATTGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATGTTGTTTTCAAGCGAAGACCAAATTGATGCGTATTAACAGACGTTCTGGGAGTACTGATATTTCCTGTGTTCTGTGATACTGGTTGTGTTTCTCTTATAAACGAGTGCGAGCAAATTTGTTGTAGTTGATAAACCAATATGCCTAGTAATTATCTTTTTAGAGTAGGTGGTGCATTGAGGCAGGGAATTAGGAAATCCATTTCTGGGCAAGAAAGGGGGCTTCAATTGGTGGAGATTTTTTCTGAAGAGCGGTTGTTGTTGGGGAAGTCCTTCTGTTCTGTGCCATCTGCAAGATTGTCTGACCTGCATGTGTTTGTAAGGTCTGGAGCTTTTGCTGCAGCACAGACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745332" ref_strand="+" ref_description="SGN-E745332 [GI|47105746]">
      <seq>ggtcttgaaaagtgaagagaaaatggcgggtcgtagggagaagtatggtcaatctataagaggatctcgaattgctggagcaattgcgatcggagttttgttgggttgtgtgtttgctttcttgtatcctaatggatttttttctcccgatccaaggtctcaaagtcaccctgtttctaaatctaatcttcaggttgacttgcccaactgtgaatccacggagggggtaaacatgatgaaatctgaatataggaagttgactgaaaagaatgcagagttgcaaaagcaggtgagagagctaaatcaaaagcttcaggcggctcagcagggaaatggtcgtacacaggagcaactggtggtgtcgagtcaacctcagaaagctggaccttttggaactgtcaaaagtttgagaactaaccctcctgttatgcctgatgagtcagtgaacccaagattagcaaagctcttggcagagattgcagttggcaaagaggtcatagttgcacttgctaattcaaatgtgaaatccatgttggaggtttggttcaacagtattaaaaaagtgggtatccccaattatctggtcgtggctttagatgacgctatagtggagttctgcaaggaaaatgatgtcccagtttataaaagggaccctgatgagaatgttgattttattggaaaaagtggaggcaaccatgctgtctcagggttgaagttccgaattttgagggaatttttgcagcttggttacggtgtcctcctgtctgatgtcgatattgtgtatttgcaaaatccttttgatcatttatatcgtgattcagatgttgaatcaatgtcagatggtcacaataatatgacagcttatggttataatgatgtttttgatgaaccatcaatgggttgggctcgatatgcacatacaatgaggatatgggtttataattctggtttcttttatattcggccaacaattccttcaattgagctcttagatcgggttgctgatcggcttactactcagccaaattcctgggaccaggcagttttcaatgaagagctggcttttccatcacatcctgggtatattggcctttacgcttccaggagaacaatggatatctacctgttcatgaatagcaaggtcctattcaagactgtaagaaaagatgctaatctgaagaagttgaaaccagttatagttcacgttaactatcacccggacaaatttcctagaatgaaagcagttgttgagtactatgtcaacggcaagcaggatgctctggatgcattcccagatggttcagtatagtagcagcagctgaaatggacctttaattgagatctaggccagtgatattctatgtcttgctatttgtcttttcatacaggtaggctcagttgattccccttttggatcaatgtgtaataccaacctcttttttgagaactcaatgtgtaataccaacttcttatcaactacattcagaacttgcatctctttcaccacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="60427" stop="63307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60726" g_stop="60918" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60919" i_stop="61693" i_length="775">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61694" g_stop="63008" g_length="1315"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="1508" r_length="1315" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1509" polyA_stop="1528"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E745332" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1508</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60726" e_stop="60918"/>
          <exon e_start="61694" e_stop="63008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTGAAAAGTGAAGAGAAAATGGCGGGTCGTAGGGAGAAGTATGGTCAATCTATAAGAGGATCTCGAATTGCTGGAGCAATTGCGATCGGAGTTTTGTTGGGTTGTGTGTTTGCTTTCTTGTATCCTAATGGATTTTTTTCTCCCGATCCAAGGTCTCAAAGTCACCCTGTTTCTAAATCTAATCTTCAGGTGAGTTTTCAGTTAATTTGGGTTACTTATATAATGGGGTTGTGATAGAATTGTGTTATTTACTTGTATAGAATTGTGTTATTTACTTGTATTGACATCTCTGCTTACTAGACTAAGAGCAAAGGTGGTGGGGTGTAAGGTCTGTGTACCTCTCCGAGACTCCATTTCCGTGGGCGGTTACACTGGGTATGTTGTTGTTGTAGTAGACTAAGTAAGACCAAAGATGTAGTAAGGTGTGCGTACATCCTACCCTTTCCAATCTCCACTTTTGTGATTATATTTGGTGTGTTGTTGCTGTACTAGACTAAGAAAGAGTGAAGAAGGGGTAAGGTGTGCATACATCCTACCGTCACAGTCTCCAATTGGGGATTACACTGGTGTGGTGTTGTTGTTGTAGTAAGAGCAAAGGTTTGTGTACATATTACCCTTCTCAGACCTCAATTATGGGATTACACTGGTTACGTTGGTATGTTGTTGTAAGAGCTTAGGGGAGTTTTGTTTTTCTTGAGGTTAATTAATGTAGTTGTTTCTTAGAGTTGTATTGTTACCCTGTCTTTGAATTGCATTTAGGTGGCGTGTATGAAGTTATAGGAATTTAGTCAGCTGGTATCCTTTGTTAGATTGCATGTGTACATCTTCATTTATATATAAAAGGACAAATGTTAATTATGGTTGTCGTTTTTATGTTGGAACTGGATATAACGTGTGGATGTTGCTTGATAAGTGTTGAATTATTTTTATAGCTCCTTAATTAGAGATTCAATTTGATTCCTAGGTTGACTTGCCCAACTGTGAATCCACGGAGGGGGTAAACATGATGAAATCTGAATATAGGAAGTTGACTGAAAAGAATGCAGAGTTGCAAAAGCAGGTGAGAGAGCTAAATCAAAAGCTTCAGGCGGCTCAGCAGGGAAATGGTCGTACACAGGAGCAACTGGTGGTGTCGAGTCAACCTCAGAAAGCTGGACCTTTTGGAACTGTCAAAAGTTTGAGAACTAACCCTCCTGTTATGCCTGATGAGTCAGTGAACCCAAGATTAGCAAAGCTCTTGGCAGAGATTGCAGTTGGCAAAGAGGTCATAGTTGCACTTGCTAATTCAAATGTGAAATCCATGTTGGAGGTTTGGTTCAACAGTATTAAAAAAGTGGGTATCCCCAATTATCTGGTCGTGGCTTTAGATGACGCTATAGTGGAGTTCTGCAAGGAAAATGATGTCCCAGTTTATAAAAGGGACCCTGATGAGAATGTTGATTTTATTGGAAAAAGTGGAGGCAACCATGCTGTCTCAGGGTTGAAGTTCCGAATTTTGAGGGAATTTTTGCAGCTTGGTTACGGTGTCCTCCTGTCTGATGTCGATATTGTGTATTTGCAAAATCCTTTTGATCATTTATATCGTGATTCAGATGTTGAATCAATGTCAGATGGTCACAATAATATGACAGCTTATGGTTATAATGATGTTTTTGATGAACCATCAATGGGTTGGGCTCGATATGCACATACAATGAGGATATGGGTTTATAATTCTGGTTTCTTTTATATTCGGCCAACAATTCCTTCAATTGAGCTCTTAGATCGGGTTGCTGATCGGCTTACTACTCAGCCAAATTCCTGGGACCAGGCAGTTTTCAATGAAGAGCTGGCTTTTCCATCACATCCTGGGTATATTGGCCTTTACGCTTCCAGGAGAACAATGGATATCTACCTGTTCATGAATAGCAAGGTCCTATTCAAGACTGTAAGAAAAGATGCTAATCTGAAGAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAAGCAGTTGTTGAGTACTATGTCAACGGCAAGCAGGATGCTCTGGATGCATTCCCAGATGGTTCAGTATAGTAGCAGCAGCTGAAATGGACCTTTAATTGAGATCTAGGCCAGTGATATTCTATGTCTTGCTATTTGTCTTTTCATACAGGTAGGCTCAGTTGATTCCCCTTTTGGATCAATGTGTAATACCAACCTCTTTTTTGAGAACTCAATGTGTAATACCAACTTCTTATCAACTACATTCAGAACTTGCATCTCTTTCACCACC</genome_strand>
        <mrna_strand>GGTCTTGAAAAGTGAAGAGAAAATGGCGGGTCGTAGGGAGAAGTATGGTCAATCTATAAGAGGATCTCGAATTGCTGGAGCAATTGCGATCGGAGTTTTGTTGGGTTGTGTGTTTGCTTTCTTGTATCCTAATGGATTTTTTTCTCCCGATCCAAGGTCTCAAAGTCACCCTGTTTCTAAATCTAATCTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTTGCCCAACTGTGAATCCACGGAGGGGGTAAACATGATGAAATCTGAATATAGGAAGTTGACTGAAAAGAATGCAGAGTTGCAAAAGCAGGTGAGAGAGCTAAATCAAAAGCTTCAGGCGGCTCAGCAGGGAAATGGTCGTACACAGGAGCAACTGGTGGTGTCGAGTCAACCTCAGAAAGCTGGACCTTTTGGAACTGTCAAAAGTTTGAGAACTAACCCTCCTGTTATGCCTGATGAGTCAGTGAACCCAAGATTAGCAAAGCTCTTGGCAGAGATTGCAGTTGGCAAAGAGGTCATAGTTGCACTTGCTAATTCAAATGTGAAATCCATGTTGGAGGTTTGGTTCAACAGTATTAAAAAAGTGGGTATCCCCAATTATCTGGTCGTGGCTTTAGATGACGCTATAGTGGAGTTCTGCAAGGAAAATGATGTCCCAGTTTATAAAAGGGACCCTGATGAGAATGTTGATTTTATTGGAAAAAGTGGAGGCAACCATGCTGTCTCAGGGTTGAAGTTCCGAATTTTGAGGGAATTTTTGCAGCTTGGTTACGGTGTCCTCCTGTCTGATGTCGATATTGTGTATTTGCAAAATCCTTTTGATCATTTATATCGTGATTCAGATGTTGAATCAATGTCAGATGGTCACAATAATATGACAGCTTATGGTTATAATGATGTTTTTGATGAACCATCAATGGGTTGGGCTCGATATGCACATACAATGAGGATATGGGTTTATAATTCTGGTTTCTTTTATATTCGGCCAACAATTCCTTCAATTGAGCTCTTAGATCGGGTTGCTGATCGGCTTACTACTCAGCCAAATTCCTGGGACCAGGCAGTTTTCAATGAAGAGCTGGCTTTTCCATCACATCCTGGGTATATTGGCCTTTACGCTTCCAGGAGAACAATGGATATCTACCTGTTCATGAATAGCAAGGTCCTATTCAAGACTGTAAGAAAAGATGCTAATCTGAAGAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAAGCAGTTGTTGAGTACTATGTCAACGGCAAGCAGGATGCTCTGGATGCATTCCCAGATGGTTCAGTATAGTAGCAGCAGCTGAAATGGACCTTTAATTGAGATCTAGGCCAGTGATATTCTATGTCTTGCTATTTGTCTTTTCATACAGGTAGGCTCAGTTGATTCCCCTTTTGGATCAATGTGTAATACCAACCTCTTTTTTGAGAACTCAATGTGTAATACCAACTTCTTATCAACTACATTCAGAACTTGCATCTCTTTCACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553756" ref_strand="+" ref_description="SGN-E553756 [cTSC-2-C12]">
      <seq>agttctgcaaggaaaatgatgtcccagtttataaaagggaccctgatgagaatgttgattttattggaaaaagtggaggcaaccatgctgtctcggggttgaagttccgaattttgagggaatttttgcagcttggttacggtgtcctcctgtctgatgtcgatattgtgtatttgcaaaatccttttgatcatttatatcgtgattcagatgttgaatcaatgtcagatggtcacaataatatgacagcttatggttataatgatgtttttgatgaaccatcaatgggttgggctcgatatgcacatacaatgaggatatgggtttataattctggtttcttttatattcggccaacaattccttcaattgagctcttagatcgggttgctgatcggcttactactcagccaaattcctgggaccaggcagttttcaatgaagagctggcttttccatcacatcctgggtatattggcctttacgcttccaggagaacaatggatatctacctgttcatgaatagcaaggtcctattcaagactgtaagaaaagatgcctatctgaagaagttgaaaccagttatagttcacgttaactatcacccggacaaatttcctaaaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="61812" stop="63040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62112" g_stop="62740" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E553756" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62112" e_stop="62740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTGCAAGGAAAATGATGTCCCAGTTTATAAAAGGGACCCTGATGAGAATGTTGATTTTATTGGAAAAAGTGGAGGCAACCATGCTGTCTCAGGGTTGAAGTTCCGAATTTTGAGGGAATTTTTGCAGCTTGGTTACGGTGTCCTCCTGTCTGATGTCGATATTGTGTATTTGCAAAATCCTTTTGATCATTTATATCGTGATTCAGATGTTGAATCAATGTCAGATGGTCACAATAATATGACAGCTTATGGTTATAATGATGTTTTTGATGAACCATCAATGGGTTGGGCTCGATATGCACATACAATGAGGATATGGGTTTATAATTCTGGTTTCTTTTATATTCGGCCAACAATTCCTTCAATTGAGCTCTTAGATCGGGTTGCTGATCGGCTTACTACTCAGCCAAATTCCTGGGACCAGGCAGTTTTCAATGAAGAGCTGGCTTTTCCATCACATCCTGGGTATATTGGCCTTTACGCTTCCAGGAGAACAATGGATATCTACCTGTTCATGAATAGCAAGGTCCTATTCAAGACTGTAAGAAAAGATGCTAATCTGAAGAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAA</genome_strand>
        <mrna_strand>AGTTCTGCAAGGAAAATGATGTCCCAGTTTATAAAAGGGACCCTGATGAGAATGTTGATTTTATTGGAAAAAGTGGAGGCAACCATGCTGTCTCGGGGTTGAAGTTCCGAATTTTGAGGGAATTTTTGCAGCTTGGTTACGGTGTCCTCCTGTCTGATGTCGATATTGTGTATTTGCAAAATCCTTTTGATCATTTATATCGTGATTCAGATGTTGAATCAATGTCAGATGGTCACAATAATATGACAGCTTATGGTTATAATGATGTTTTTGATGAACCATCAATGGGTTGGGCTCGATATGCACATACAATGAGGATATGGGTTTATAATTCTGGTTTCTTTTATATTCGGCCAACAATTCCTTCAATTGAGCTCTTAGATCGGGTTGCTGATCGGCTTACTACTCAGCCAAATTCCTGGGACCAGGCAGTTTTCAATGAAGAGCTGGCTTTTCCATCACATCCTGGGTATATTGGCCTTTACGCTTCCAGGAGAACAATGGATATCTACCTGTTCATGAATAGCAAGGTCCTATTCAAGACTGTAAGAAAAGATGCCTATCTGAAGAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAAAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344162" ref_strand="+" ref_description="SGN-E344162 [cTOF-16-O2]">
      <seq>gaagttgaaaccagttatagttcacgttaactatcacccggacaaatttcctagaatgaaagcagttgttgagtactatgtcaacggcaagcaggatgctctggatgcattcccagatggttcagtatagtagcagcagctgaaatggacctttaattgagatctaggccagtgatattctatgtcttgctatttgtcttttcatacaggtaggctcagttgattccccttttggatcaatgtgtaataccaacctcttttttgagaactcaatgtgtaataccaacttcttatcaactacattcagaacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="+" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="62380" stop="63294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62680" g_stop="62991" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="323"/>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="+" ref_id="SGN-E344162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62680" e_stop="62991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAAGCAGTTGTTGAGTACTATGTCAACGGCAAGCAGGATGCTCTGGATGCATTCCCAGATGGTTCAGTATAGTAGCAGCAGCTGAAATGGACCTTTAATTGAGATCTAGGCCAGTGATATTCTATGTCTTGCTATTTGTCTTTTCATACAGGTAGGCTCAGTTGATTCCCCTTTTGGATCAATGTGTAATACCAACCTCTTTTTTGAGAACTCAATGTGTAATACCAACTTCTTATCAACTACATTCAGAACTT</genome_strand>
        <mrna_strand>GAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAAGCAGTTGTTGAGTACTATGTCAACGGCAAGCAGGATGCTCTGGATGCATTCCCAGATGGTTCAGTATAGTAGCAGCAGCTGAAATGGACCTTTAATTGAGATCTAGGCCAGTGATATTCTATGTCTTGCTATTTGTCTTTTCATACAGGTAGGCTCAGTTGATTCCCCTTTTGGATCAATGTGTAATACCAACCTCTTTTTTGAGAACTCAATGTGTAATACCAACTTCTTATCAACTACATTCAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538058" ref_strand="+" ref_description="SGN-E538058 [TUS-56-P18](-)">
      <seq>tgcagttcaaaaaaacaaccgcaaggtgggtctaaattgattaattcttctgaagccaaacttacttttgttattcaggcaaccctaaaacttggatatagaatgaagattgggtggggttgtgttgcgctcaaaatcgtctctgacaccaaaatatttcatgaggacaggaatatcttgttgatatccacaggaaaattacttgtgtaatacttgagcaattctcatcaatggagcattatattttggttgactagccactttaatccgtctctgggttcttcatccaaatagggaaaatcgaaaggaagtacattgatgcagaaggaagagaaaatgcagcagaaagtgtactcctcatggtcaggaacaccattgctcaggcaatatagttcgcattgcatagattatgcgtctttaagcatttttcagttaaaatatacatcaactttttatgagcgaaagcagttttaagttgattgtctcacaacaactgttcttcaagataacttttgatactcctctctgctttagtggagtgaggatgaagcctaactaggctacggaaattgtcatcctgtgtgagattcctatacttcctggtgatatgtaacatgatatctgtaagcaggtgatttgcagtgaaatcgaagtggtggatctctgtttcgaagaaactatctttacaggttgagtgtgtcctccaagtgttaagagtcattttgtaatagatactatcaaccccagtgtcgtgtcttttgaactcttgagttgttttaatacatatagtaacttttgtcggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="66381" stop="64956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66081" g_stop="65247" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E538058" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66081" e_stop="65247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTCAAAAAAACAACCGCAAGGTGGGTCTAAATTGGTTAATTCTTCTGAAGCCAAACTTACTTTTGTTATTCAGGCAACCCTAAAACTTGGATATAGAATGAAGATTGGGTGGGGTTGTGTTGCGCTCAAAATCGTCTCTGACACCAAAATATTTCATGAGGACAGGAATATCTTGTTGATATCCACAGGAGAATTACTTGTGTAATACTTGAGCAATTCTCATCAATGGAGCATTATATTTTGGTTGACTAGCCACTTTAATCCGTCTCTGGGTTCTTCAAGATCCAAATAGGGAAAATCGAAAGGAAGTACATTGATGCAGAAGGAAGAGAAAATGCAGCAGAAAGTGTACTCCTCATGGTCAGGAACACCATTTCTCAGGCAATATAGTTCGCATTGCATAGATTATGCGTCTTTAAGCATTTTTCAGTTAAAATATACATCAACTTTTTATGAGCGAAAGCAGTTTTAAGTTGATTGTCTCACAACAACTGTTCTTCAAGATAACTTTTGAGACTCCTCTCTGCTTTAGTGGAGTGAGGATGAAGCCTAACTAGGCTACGGAAATTGTCATCCTGTGTGAGATTCCTATACTTCCTGGTGATATGTAACATGATATCTGTAAGCAGGTGATTTGCAGTGAAATCGAAGTGGTGGATCTCTGTTTCGAAGAAACTATCTTTACAGGTTGAGTGTGTCCTCCAATTGAGTGTGTCCTCCAAGTGTTAAGAGTCATTTTGTAATAGATACTATCAA-CCCAGTGTCGTGTCTTTTGAACTCTTGAGTTGTTTTAATACATATAGTAACTTTTGTCGGTATAATGCAATAGG</genome_strand>
        <mrna_strand>TGCAGTTCAAAAAAACAACCGCAAGGTGGGTCTAAATTGATTAATTCTTCTGAAGCCAAACTTACTTTTGTTATTCAGGCAACCCTAAAACTTGGATATAGAATGAAGATTGGGTGGGGTTGTGTTGCGCTCAAAATCGTCTCTGACACCAAAATATTTCATGAGGACAGGAATATCTTGTTGATATCCACAGGAAAATTACTTGTGTAATACTTGAGCAATTCTCATCAATGGAGCATTATATTTTGGTTGACTAGCCACTTTAATCCGTCTCTGGGTTCTTC---ATCCAAATAGGGAAAATCGAAAGGAAGTACATTGATGCAGAAGGAAGAGAAAATGCAGCAGAAAGTGTACTCCTCATGGTCAGGAACACCATTGCTCAGGCAATATAGTTCGCATTGCATAGATTATGCGTCTTTAAGCATTTTTCAGTTAAAATATACATCAACTTTTTATGAGCGAAAGCAGTTTTAAGTTGATTGTCTCACAACAACTGTTCTTCAAGATAACTTTTGATACTCCTCTCTGCTTTAGTGGAGTGAGGATGAAGCCTAACTAGGCTACGGAAATTGTCATCCTGTGTGAGATTCCTATACTTCCTGGTGATATGTAACATGATATCTGTAAGCAGGTGATTTGCAGTGAAATCGAAGTGGTGGATCTCTGTTTCGAAGAAACTATCTTTAC------A--G-G--------TTGAGTGTGTCCTCCAAGTGTTAAGAGTCATTTTGTAATAGATACTATCAACCCCAGTGTCGTGTCTTTTGAACTCTTGAGTTGTTTTAATACATATAGTAACTTTTGTCGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237637" ref_strand="+" ref_description="SGN-E237637 [cLED-19-M21]">
      <seq>ttgtgttgcgctcaaaatcgtctctgacaccaaaatatttcatgaggacaggaatatcttgttgatatccacaggaaaattacttgtgtaatacttgagcaattctcatcaatggagcattatattttggttgactagccactttaatccgtctctgggttcttcatccaaatagggaaaatcgaaaggaagtacattgatgcagaaggaagagaaaatgctacagaaagtgttctccttatggttaggaacaccattgctcaggcaatatagttcgcattgcatagattatgcgtctttaagcatttttcagttaaaatatacatcaactttttatgagcgaaagcaactttaagttgattgtttacaacaactgttcttcaagataactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="66262" stop="65265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65962" g_stop="65565" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E237637" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65962" e_stop="65565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTGCGCTCAAAATCGTCTCTGACACCAAAATATTTCATGAGGACAGGAATATCTTGTTGATATCCACAGGAGAATTACTTGTGTAATACTTGAGCAATTCTCATCAATGGAGCATTATATTTTGGTTGACTAGCCACTTTAATCCGTCTCTGGGTTCTTCAAGATCCAAATAGGGAAAATCGAAAGGAAGTACATTGATGCAGAAGGAAGAGAAAATGCAGCAGAAAGTGTACTCCTCATGGTCAGGAACACCATTTCTCAGGCAATATAGTTCGCATTGCATAGATTATGCGTCTTTAAGCATTTTTCAGTTAAAATATACATCAACTTTTTATGAGCGAAAGCAGTTTTAAGTTGATTGTCTCACAACAACTGTTCTTCAAGATAACTTTT</genome_strand>
        <mrna_strand>TTGTGTTGCGCTCAAAATCGTCTCTGACACCAAAATATTTCATGAGGACAGGAATATCTTGTTGATATCCACAGGAAAATTACTTGTGTAATACTTGAGCAATTCTCATCAATGGAGCATTATATTTTGGTTGACTAGCCACTTTAATCCGTCTCTGGGTTCTTC---ATCCAAATAGGGAAAATCGAAAGGAAGTACATTGATGCAGAAGGAAGAGAAAATGCTACAGAAAGTGTTCTCCTTATGGTTAGGAACACCATTGCTCAGGCAATATAGTTCGCATTGCATAGATTATGCGTCTTTAAGCATTTTTCAGTTAAAATATACATCAACTTTTTATGAGCGAAAGCAACTTTAAGTTGATTGT-TTACAACAACTGTTCTTCAAGATAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285136" ref_strand="+" ref_description="SGN-E285136 [cLER-20-C20]">
      <seq>ggaagtagtttgccctctagtgttccttttcaagctgactctttgtctgacgatgatttgatgttgttgggaagagaaaccttgaaggcatgggaagcacttagatctggagttcagaggctattgttagtatatccagcaaaggtctgtgaacattgctcagaagttcatatagggccttctggacataaggctcgtctttgtggtgtatttaagtttgaaagttggcgaggaagtcacttttggaagaaggcagaagtggatcatttggttccttcaaaaaccgtgtggtaccgccgaccccaggatcctccattacttctggatgacgggcggaactactatgggcatgctcccgctgttgttgatctgtgtactaaggctggtattattgctccttccaagtaccattgcatgatgaaacttgaaggtctatcagccccgtctctgtgaaaggaatgatgggatctttcctgctcttattaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="66727" stop="65779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66567" g_stop="66079" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E285136" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66567" e_stop="66079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGAAGGCAGAAGTGGATCATTTGGTTCCTTCAAAAACCGTGTGGTACCGCCGACCCCAGGATCCTCCATTACTTCTGGATGACGGGCGGAACTACTATGGGCATGCTCCCGCTGTTGTTGATCTGTGTACTAAGGCTGGTATTATTGCTCCTTCCAAGTACCATTGCATGATGAAACTTGAAGGTCTATCAGCCCCGTCTCTGTGAAAGGAATGATGGGATCTTTCCTGCTCTTATTAATGC</genome_strand>
        <mrna_strand>GGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGAAGGCAGAAGTGGATCATTTGGTTCCTTCAAAAACCGTGTGGTACCGCCGACCCCAGGATCCTCCATTACTTCTGGATGACGGGCGGAACTACTATGGGCATGCTCCCGCTGTTGTTGATCTGTGTACTAAGGCTGGTATTATTGCTCCTTCCAAGTACCATTGCATGATGAAACTTGAAGGTCTATCAGCCCCGTCTCTGTGAAAGGAATGATGGGATCTTTCCTGCTCTTATTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246853" ref_strand="+" ref_description="SGN-E246853 [cLEF-41-G12]">
      <seq>actatgtttcagaatataatcaatcaccaagaaagatttgattatgatcgcatgccagcagttgtggaactgtgcttgcaagcaggggctattccaagtgaagaaattgtatgcggaagtagtttgccctctagtgttccttttcaagctgactctttgtctgacgatgatttgatgttgttgggaagagaaaccttgaaggcatgggaagcacttagatctggagttcagaggctattgttagtatatccagcaaaggtctgtgaacattgctcagaagttcatatagggccttctggacataaggctcgtctttgtggtgtatttaagtttgaaagttggcgaggaagtcacttttggaagaaggcagaagtggatcatttggttccttcaaaaaccgtgtggtaccgccgaccccaggatcctccattacttctggatgacgggcggaactactatgggcatgctcccgctgttgttgatctgtgtactaaggctggtattattgctccttccaagtaccattgcatgatgaaacttgaaggtctatcagccccgtctctgtgaaaggaatgatgggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="66727" stop="65797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66681" g_stop="66097" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E246853" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66681" e_stop="66097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGTTTCAGAATATAATCAATCACCAAGAAAGATTTGATTATGATCGCATCCCAGCAGTTGTGGAACTGTGCTTGCAAGCAGGGGCTATTCCAAGTGAAGAAATTGTATGCGGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGAAGGCAGAAGTGGATCATTTGGTTCCTTCAAAAACCGTGTGGTACCGCCGACCCCAGGATCCTCCATTACTTCTGGATGACGGGCGGAACTACTATGGGCATGCTCCCGCTGTTGTTGATCTGTGTACTAAGGCTGGTATTATTGCTCCTTCCAAGTACCATTGCATGATGAAACTTGAAGGTCTATCAGCCCCGTCTCTGTGAAAGGAATGATGGGATCTT</genome_strand>
        <mrna_strand>ACTATGTTTCAGAATATAATCAATCACCAAGAAAGATTTGATTATGATCGCATGCCAGCAGTTGTGGAACTGTGCTTGCAAGCAGGGGCTATTCCAAGTGAAGAAATTGTATGCGGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGAAGGCAGAAGTGGATCATTTGGTTCCTTCAAAAACCGTGTGGTACCGCCGACCCCAGGATCCTCCATTACTTCTGGATGACGGGCGGAACTACTATGGGCATGCTCCCGCTGTTGTTGATCTGTGTACTAAGGCTGGTATTATTGCTCCTTCCAAGTACCATTGCATGATGAAACTTGAAGGTCTATCAGCCCCGTCTCTGTGAAAGGAATGATGGGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285138" ref_strand="+" ref_description="SGN-E285138 [cLER-20-C24]">
      <seq>ggaagtagtttgccctctagtgttccttttcaagctgggtctttgtctgacgatgatttgatgttgttgggaagagaaaccttgaaggcatgggaagcacttatatctggagttcagaggctattgttagtatattcagcaaaggtctgtgaacattgctcataagttcatatagggccttctggacataaggctcgtctttgtggtgtatttaagtttgaaagttggcgaggaagtcacttttggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0170F02-0WfiO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0170F02.1" temp_strand="-" temp_description="C04HBa0170F02.1  CU914526.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0170F02 sequenced_by:sanger upload_account_name:uk">
        <position start="66727" stop="66018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66567" g_stop="66318" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0170F02.1" gen_strand="-" ref_id="SGN-E285138" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0170F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66567" e_stop="66318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGA</genome_strand>
        <mrna_strand>GGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGGGTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTATATCTGGAGTTCAGAGGCTATTGTTAGTATATTCAGCAAAGGTCTGTGAACATTGCTCATAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>35</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6855" PGL_stop="1879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6855" e_stop="6663"/>
            <exon e_start="5581" e_stop="5430"/>
            <exon e_start="4486" e_stop="4383"/>
            <exon e_start="4281" e_stop="4221"/>
            <exon e_start="2623" e_stop="2531"/>
            <exon e_start="2433" e_stop="2333"/>
            <exon e_start="1974" e_stop="1879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.984"/>
          <exon-intron don_prob="0.946" acc_prob="0.993" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.595" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="6855" e_stop="6663" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="6662" i_stop="5582" i_length="1081"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="5581" e_stop="5430" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5429" i_stop="4487" i_length="943"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4486" e_stop="4383" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="4382" i_stop="4282" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4281" e_stop="4221" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4220" i_stop="2624" i_length="1597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2623" e_stop="2531" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2530" i_stop="2434" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2433" e_stop="2333" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.595">
            <gDNA_intron_boundary i_start="2332" i_stop="1975" i_length="358"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="1974" e_stop="1879" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6855" stop="6663"/>
              <exon start="5581" stop="5430"/>
              <exon start="4486" stop="4383"/>
              <exon start="4281" stop="4221"/>
              <exon start="2623" stop="2531"/>
              <exon start="2433" stop="2367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6850" stop="6663"/>
              <exon start="5581" stop="5430"/>
              <exon start="4486" stop="4383"/>
              <exon start="4281" stop="4221"/>
              <exon start="2623" stop="2531"/>
              <exon start="2433" stop="2333"/>
              <exon start="1974" stop="1879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGACGAGACACTCCAAATTGCGTATTCGAGAAGATTAGCTCAGAGATAAACCCTAAATTGCAATGGAGAGTGCGTTCGCTAGTGCCTCTGCCATCAGCGACCAACGCCAGAAAATCGAACAGTACAAGCACATTCTCTCCACCGTTCTCGCATCAAGCGATATCCAACAAGCCAAGCAGTTCATCGATCACA : TGCTATCGGATGACGTACCCTTGGTGGTATCTAGACAGCTATTGCAGACATTTGCCCAGGAATTCGATAGATTGGAACCTGATGTTCAAAAGGAAGTAGCACACTATACTCTCAACCAGATACAGCCTCGTGTGGTGTCCTTTGAAGAACAA : GTGTTGATCATTCGGGAAAAACTTGCAGAATTATATGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTTAGTGGCATCGATTTAGACTCTGCAATGAG : ATTCGTTGATGATACATTCAGAATTTCAAAATGTGTCCAAATTGCTCGTCTCTATCTGGAG : GATGATGATGCAGTTAATGCAGAAGCGTTTATAAATAAAGCTTCCTTTAAAGTTAACAACATTAAGAATGAAGTATTGAATTTGCAGTACAAG : GTTTGCTATGCTAGGATTTTGGATTTGAAGAGAAAATTCTTGGAAGCTGCCTTGCGTTACTATGACATTTCTCAGATTGAGAAGCGACAAATTGGTGACGA : AGAAATCGATGAAGCTGCCTTAGAGCAAGCTCTGGCAGCTGCTGTGACGTGCACAATTTTGGCTGCAGCAGGTCCTCAACGATCTCGTGTACTTGC</gDNA_template>
            <first_frame> S  T  R  H  S  K  L  R  I  R  E  D  *  L  R  D  K  P  *  I  A  M  E  S  A  F  A  S  A  S  A  I  S  D  Q  R  Q  K  I  E  Q  Y  K  H  I  L  S  T  V  L  A  S  S  D  I  Q  Q  A  K  Q  F  I  D  H   : M  L  S  D  D  V  P  L  V  V  S  R  Q  L  L  Q  T  F  A  Q  E  F  D  R  L  E  P  D  V  Q  K  E  V  A  H  Y  T  L  N  Q  I  Q  P  R  V  V  S  F  E  E  Q  :  V  L  I  I  R  E  K  L  A  E  L  Y  E  S  E  Q  Q  W  S  K  A  A  Q  M  L  S  G  I  D  L  D  S  A  M  R :   F  V  D  D  T  F  R  I  S  K  C  V  Q  I  A  R  L  Y  L  E  :  D  D  D  A  V  N  A  E  A  F  I  N  K  A  S  F  K  V  N  N  I  K  N  E  V  L  N  L  Q  Y  K  :  V  C  Y  A  R  I  L  D  L  K  R  K  F  L  E  A  A  L  R  Y  Y  D  I  S  Q  I  E  K  R  Q  I  G  D  E :   E  I  D  E  A  A  L  E  Q  A  L  A  A  A  V  T  C  T  I  L  A  A  A  G  P  Q  R  S  R  V  L   </first_frame>
            <second_frame>  R  R  D  T  P  N  C  V  F  E  K  I  S  S  E  I  N  P  K  L  Q  W  R  V  R  S  L  V  P  L  P  S  A  T  N  A  R  K  S  N  S  T  S  T  F  S  P  P  F  S  H  Q  A  I  S  N  K  P  S  S  S  S  I  T  :  C  Y  R  M  T  Y  P  W  W  Y  L  D  S  Y  C  R  H  L  P  R  N  S  I  D  W  N  L  M  F  K  R  K  *  H  T  I  L  S  T  R  Y  S  L  V  W  C  P  L  K  N  K :   C  *  S  F  G  K  N  L  Q  N  Y  M  S  L  S  N  N  G  Q  K  Q  L  R  C  L  V  A  S  I  *  T  L  Q  *   : D  S  L  M  I  H  S  E  F  Q  N  V  S  K  L  L  V  S  I  W  R :   M  M  M  Q  L  M  Q  K  R  L  *  I  K  L  P  L  K  L  T  T  L  R  M  K  Y  *  I  C  S  T  R :   F  A  M  L  G  F  W  I  *  R  E  N  S  W  K  L  P  C  V  T  M  T  F  L  R  L  R  S  D  K  L  V  T   : K  K  S  M  K  L  P  *  S  K  L  W  Q  L  L  *  R  A  Q  F  W  L  Q  Q  V  L  N  D  L  V  Y  L  </second_frame>
            <third_frame>   D  E  T  L  Q  I  A  Y  S  R  R  L  A  Q  R  *  T  L  N  C  N  G  E  C  V  R  *  C  L  C  H  Q  R  P  T  P  E  N  R  T  V  Q  A  H  S  L  H  R  S  R  I  K  R  Y  P  T  S  Q  A  V  H  R  S  H :   A  I  G  *  R  T  L  G  G  I  *  T  A  I  A  D  I  C  P  G  I  R  *  I  G  T  *  C  S  K  G  S  S  T  L  Y  S  Q  P  D  T  A  S  C  G  V  L  *  R  T   : S  V  D  H  S  G  K  T  C  R  I  I  *  V  *  A  T  M  V  K  S  S  S  D  A  *  W  H  R  F  R  L  C  N  E  :  I  R  *  *  Y  I  Q  N  F  K  M  C  P  N  C  S  S  L  S  G   : G  *  *  C  S  *  C  R  S  V  Y  K  *  S  F  L  *  S  *  Q  H  *  E  *  S  I  E  F  A  V  Q   : G  L  L  C  *  D  F  G  F  E  E  K  I  L  G  S  C  L  A  L  L  *  H  F  S  D  *  E  A  T  N  W  *  R  :  R  N  R  *  S  C  L  R  A  S  S  G  S  C  C  D  V  H  N  F  G  C  S  R  S  S  T  I  S  C  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6798" stop="6663"/>
                    <exon start="5581" stop="5430"/>
                    <exon start="4486" stop="4383"/>
                    <exon start="4281" stop="4221"/>
                    <exon start="2623" stop="2531"/>
                    <exon start="2433" stop="2333"/>
                    <exon start="1974" stop="1881"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMESAFASASAISDQRQKIEQYKHILSTVLASSDIQQAKQFIDHMLSDDVPLVVSRQLLQTFAQEFDRLEPDVQKEVAHYTLNQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLSGIDLDSAMRFVDDTFRISKCVQIARLYLEDDDAVNAEAFINKASFKVNNIKNEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEIDEAALEQALAAAVTCTILAAAGPQRSRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19542" PGL_stop="29399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19542" e_stop="19660"/>
            <exon e_start="20139" e_stop="20307"/>
            <exon e_start="20498" e_stop="20579"/>
            <exon e_start="20677" e_stop="20770"/>
            <exon e_start="21453" e_stop="21549"/>
            <exon e_start="22603" e_stop="22696"/>
            <exon e_start="26868" e_stop="26940"/>
            <exon e_start="28139" e_stop="28312"/>
            <exon e_start="28437" e_stop="28559"/>
            <exon e_start="29156" e_stop="29399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.847" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.120" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="19542" e_stop="19660" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.847">
            <gDNA_intron_boundary i_start="19661" i_stop="20138" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20139" e_stop="20307" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="20308" i_stop="20497" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20498" e_stop="20579" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.120" acc_prob="0.966">
            <gDNA_intron_boundary i_start="20580" i_stop="20676" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20677" e_stop="20770" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21453" e_stop="21549" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22603" e_stop="22696" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.929" acc_prob="0.899">
            <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26940" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26941" i_stop="28138" i_length="1198"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28139" e_stop="28312" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.905" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28313" i_stop="28436" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28437" e_stop="28559" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="28560" i_stop="29155" i_length="596"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29156" e_stop="29399" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19542" stop="19660"/>
              <exon start="20139" stop="20307"/>
              <exon start="20498" stop="20579"/>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20206" stop="20307"/>
              <exon start="20498" stop="20579"/>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26940"/>
              <exon start="28139" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26940"/>
              <exon start="28139" stop="28312"/>
              <exon start="28437" stop="28559"/>
              <exon start="29156" stop="29399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28228" stop="28312"/>
              <exon start="28437" stop="28559"/>
              <exon start="29156" stop="29307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCCATAGATATGATGGAAGAGGATGCTTTTTCTAGCCTTTCAATCCGTTTGAAAATAAGTTTGACAGTCTGGGACTTTGTGCTTCCAGCTACCCCTTCTGTCCCTGCTGTGATTGGT : ATATCTGATACTGTTATTGAAGATCGATTTGGGGTTGAGCACGGAAGTAATGAATGGTTTGAGCTGTTAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAG : CTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTG : CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG : CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCG : GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG : CGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAG : GAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAG : ATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAG : GATATTGAGTACCTCAAGCTGTATGCTTCAAGATATGGTAGGGATGAAAGCCTCAACCTTTTGGAGAAGACAGGAATGTATCTAGGGCCTGAGCGCTACACTTCGGAACACAGACCAATAGATGTCATGAGGGGTGAGGTTTACAGGACATGCCAATCGTAAATTTGAAGCTCGAGTTTGATGACACCCATCTGTATCAATGTAAAGCATCTCAATCATATCGGTTTGTATGATGTATATTTAT</gDNA_template>
            <first_frame> G  P  *  I  *  W  K  R  M  L  F  L  A  F  Q  S  V  *  K  *  V  *  Q  S  G  T  L  C  F  Q  L  P  L  L  S  L  L  *  L  V :   Y  L  I  L  L  L  K  I  D  L  G  L  S  T  E  V  M  N  G  L  S  C  *  I  S  I  S  N  G  Y  F  S  I  E  S  V  H  T  S  A  G  G  A  T  A  *  E  F  *  H  T  P  H  H  G  Q  :  L  T  I  Q  N  Q  T  S  I  S  L  T  L  V  L  R  H  M  L  Y  L  M  V  R  *  S  P   : A  A  I  L  R  R  T  T  Y  E  G  R  *  R  Y  *  E  Q  K  N  I  G  G  K  H  T  S  I  C  G  M  S :   L  L  T  L  N  N  I  L  P  S  A  A  W  P  V  I  F  M  P  M  H  L  M  L  V  F  *  Q  L  I  I  A  :  D  Q  V  M  H  L  L  L  Q  I  T  L  R  L  F  *  K  F  L  R  S  Y  V  L  I  L  R  Y  I  A  Q   : A  N  G  L  L  V  T  E  R  I  W  R  R  I  L  S  R  R  Y  K  Q  K  T  E  R :   S  G  G  H  M  Y  A  W  D  Q  V  I  L  I  P  T  G  T  W  G  C  E  A  L  N  T  V  L  *  C  G  V  C  G  K  K  V  E  Q  V  S  Y  I  G  V  P  T  A  M  R  R  Q  Q  F  L  V  L  R :   L  S  S  G  A  A  F  L  Q  V  M  E  F  Y  S  I  L  V  R  C  S  H  H  L  S  N  L  L  L  H  *  D  *  R  G  S  *  V  A  Y  R :   I  L  S  T  S  S  C  M  L  Q  D  M  V  G  M  K  A  S  T  F  W  R  R  Q  E  C  I  *  G  L  S  A  T  L  R  N  T  D  Q  *  M  S  *  G  V  R  F  T  G  H  A  N  R  K  F  E  A  R  V  *  *  H  P  S  V  S  M  *  S  I  S  I  I  S  V  C  M  M  Y  I  Y </first_frame>
            <second_frame>  A  H  R  Y  D  G  R  G  C  F  F  *  P  F  N  P  F  E  N  K  F  D  S  L  G  L  C  A  S  S  Y  P  F  C  P  C  C  D  W   : Y  I  *  Y  C  Y  *  R  S  I  W  G  *  A  R  K  *  *  M  V  *  A  V  R  S  A  F  Q  M  A  T  S  V  S  N  Q  S  I  L  L  Q  V  G  Q  R  H  E  S  F  D  I  H  L  T  M  A  S :   *  P  S  K  I  R  R  V  F  L  *  P  S  S  C  G  I  C  C  T  *  W  S  D  S  P  L  :  R  R  Y  C  E  G  L  L  T  K  G  G  R  D  I  K  N  K  K  T  L  E  E  S  I  L  L  S  V  G  *   : A  S  *  H  *  T  I  Y  F  P  P  P  H  G  Q  *  Y  S  C  L  C  T  *  C  S  Y  S  D  N  L  L  L  R :   T  K  *  C  T  S  C  Y  K  *  L  *  G  F  S  E  S  S  C  V  P  T  S  S  Y  S  D  I  L  H  K  :  R  M  G  Y  W  *  Q  R  G  S  G  E  G  Y  Y  R  G  D  T  N  R  K  R  R   : G  V  V  D  I  C  M  L  G  T  R  *  S  S  S  Q  L  A  L  G  D  A  R  H  S  T  P  C  C  D  V  A  C  V  E  R  R  W  N  R  F  L  I  L  G  C  Q  L  L  *  E  G  N  S  S  *  C  *   : D  *  V  Q  A  R  P  S  S  R  *  W  S  F  I  L  S  W  S  G  V  L  I  I  S  A  T  C  C  F  T  E  T  R  E  A  L  E  W  L  T   : G  Y  *  V  P  Q  A  V  C  F  K  I  W  *  G  *  K  P  Q  P  F  G  E  D  R  N  V  S  R  A  *  A  L  H  F  G  T  Q  T  N  R  C  H  E  G  *  G  L  Q  D  M  P  I  V  N  L  K  L  E  F  D  D  T  H  L  Y  Q  C  K  A  S  Q  S  Y  R  F  V  *  C  I  F   </second_frame>
            <third_frame>   P  I  D  M  M  E  E  D  A  F  S  S  L  S  I  R  L  K  I  S  L  T  V  W  D  F  V  L  P  A  T  P  S  V  P  A  V  I  G  :  I  S  D  T  V  I  E  D  R  F  G  V  E  H  G  S  N  E  W  F  E  L  L  D  Q  H  F  K  W  L  L  Q  Y  R  I  S  P  Y  F  C  R  W  G  N  G  M  R  V  L  T  Y  T  S  P  W  P   : A  D  H  P  K  S  D  E  Y  F  S  D  P  R  L  A  A  Y  A  V  P  N  G  P  I  V  P  C :   G  D  I  A  K  D  Y  L  R  R  E  V  E  I  L  R  T  K  K  H  W  R  K  A  Y  F  Y  L  W  D  E  :  P  L  N  I  E  Q  Y  T  S  L  R  R  M  A  S  D  I  H  A  Y  A  P  D  A  R  I  L  T  T  Y  Y  C   : G  P  S  D  A  P  L  A  T  N  N  F  E  A  F  L  K  V  P  A  F  L  R  P  H  T  Q  I  Y  C  T  S :   E  W  V  I  G  N  R  E  D  L  A  K  D  I  I  A  E  I  Q  T  E  N  G  E  :  E  W  W  T  Y  V  C  L  G  P  G  D  P  H  P  N  W  H  L  G  M  R  G  T  Q  H  R  A  V  M  W  R  V  W  K  E  G  G  T  G  F  L  Y  W  G  A  N  C  Y  E  K  A  T  V  P  S  A  E  :  I  K  F  R  R  G  L  P  P  G  D  G  V  L  F  Y  P  G  Q  V  F  S  S  S  Q  Q  P  V  A  S  L  R  L  E  R  L  L  S  G  L  Q  :  D  I  E  Y  L  K  L  Y  A  S  R  Y  G  R  D  E  S  L  N  L  L  E  K  T  G  M  Y  L  G  P  E  R  Y  T  S  E  H  R  P  I  D  V  M  R  G  E  V  Y  R  T  C  Q  S  *  I  *  S  S  S  L  M  T  P  I  C  I  N  V  K  H  L  N  H  I  G  L  Y  D  V  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19544" stop="19660"/>
                    <exon start="20139" stop="20307"/>
                    <exon start="20498" stop="20579"/>
                    <exon start="20677" stop="20770"/>
                    <exon start="21453" stop="21549"/>
                    <exon start="22603" stop="22696"/>
                    <exon start="26868" stop="26940"/>
                    <exon start="28139" stop="28312"/>
                    <exon start="28437" stop="28559"/>
                    <exon start="29156" stop="29317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIDMMEEDAFSSLSIRLKISLTVWDFVLPATPSVPAVIGISDTVIEDRFGVEHGSNEWFELLDQHFKWLLQYRISPYFCRWGNGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPNGPIVPCGDIAKDYLRREVEILRTKKHWRKAYFYLWDEPLNIEQYTSLRRMASDIHAYAPDARILTTYYCGPSDAPLATNNFEAFLKVPAFLRPHTQIYCTSEWVIGNREDLAKDIIAEIQTENGEEWWTYVCLGPGDPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIKFRRGLPPGDGVLFYPGQVFSSSQQPVASLRLERLLSGLQDIEYLKLYASRYGRDESLNLLEKTGMYLGPERYTSEHRPIDVMRGEVYRTCQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19542" e_stop="19660"/>
            <exon e_start="20139" e_stop="20307"/>
            <exon e_start="20498" e_stop="20579"/>
            <exon e_start="20677" e_stop="20770"/>
            <exon e_start="21453" e_stop="21549"/>
            <exon e_start="22603" e_stop="22696"/>
            <exon e_start="26868" e_stop="26940"/>
            <exon e_start="28139" e_stop="28312"/>
            <exon e_start="28437" e_stop="28559"/>
            <exon e_start="28684" e_stop="28690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.847" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.120" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.976"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="19542" e_stop="19660" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.847">
            <gDNA_intron_boundary i_start="19661" i_stop="20138" i_length="478"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20139" e_stop="20307" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="20308" i_stop="20497" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20498" e_stop="20579" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.120" acc_prob="0.966">
            <gDNA_intron_boundary i_start="20580" i_stop="20676" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20677" e_stop="20770" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.990">
            <gDNA_intron_boundary i_start="20771" i_stop="21452" i_length="682"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21453" e_stop="21549" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21550" i_stop="22602" i_length="1053"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22603" e_stop="22696" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.929" acc_prob="0.899">
            <gDNA_intron_boundary i_start="22697" i_stop="26867" i_length="4171"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26868" e_stop="26940" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26941" i_stop="28138" i_length="1198"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28139" e_stop="28312" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.905" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28313" i_stop="28436" i_length="124"/>
          </intron>
          <exon e_serial="9" e_score="0.976">
            <gDNA_exon_boundary e_start="28437" e_stop="28559" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="28560" i_stop="28683" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="0.429">
            <gDNA_exon_boundary e_start="28684" e_stop="28690" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19542" stop="19660"/>
              <exon start="20139" stop="20307"/>
              <exon start="20498" stop="20579"/>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20206" stop="20307"/>
              <exon start="20498" stop="20579"/>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26940"/>
              <exon start="28139" stop="28242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20263" stop="20307"/>
              <exon start="20498" stop="20579"/>
              <exon start="20677" stop="20770"/>
              <exon start="21453" stop="21549"/>
              <exon start="22603" stop="22696"/>
              <exon start="26868" stop="26940"/>
              <exon start="28139" stop="28312"/>
              <exon start="28437" stop="28559"/>
              <exon start="28684" stop="28690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCCATAGATATGATGGAAGAGGATGCTTTTTCTAGCCTTTCAATCCGTTTGAAAATAAGTTTGACAGTCTGGGACTTTGTGCTTCCAGCTACCCCTTCTGTCCCTGCTGTGATTGGT : ATATCTGATACTGTTATTGAAGATCGATTTGGGGTTGAGCACGGAAGTAATGAATGGTTTGAGCTGTTAGATCAGCATTTCAAATGGCTACTTCAGTATCGAATCAGTCCATACTTCTGCAGGTGGGGCAACGGCATGAGAGTTTTGACATACACCTCACCATGGCCAG : CTGACCATCCAAAATCAGACGAGTATTTCTCTGACCCTCGTCTTGCGGCATATGCTGTACCTAATGGTCCGATAGTCCCCTG : CGGCGATATTGCGAAGGACTACTTACGAAGGGAGGTAGAGATATTAAGAACAAAAAAACATTGGAGGAAAGCATACTTCTATCTGTGGGATGAG : CCTCTTAACATTGAACAATATACTTCCCTCCGCCGCATGGCCAGTGATATTCATGCCTATGCACCTGATGCTCGTATTCTGACAACTTATTATTGCG : GACCAAGTGATGCACCTCTTGCTACAAATAACTTTGAGGCTTTTCTGAAAGTTCCTGCGTTCCTACGTCCTCATACTCAGATATATTGCACAAG : CGAATGGGTTATTGGTAACAGAGAGGATCTGGCGAAGGATATTATCGCGGAGATACAAACAGAAAACGGAGAG : GAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAG : ATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACCTGTTGCTTCACTGAGACTAGAGAGGCTCTTGAGTGGCTTACAG : AACAGAG</gDNA_template>
            <first_frame> G  P  *  I  *  W  K  R  M  L  F  L  A  F  Q  S  V  *  K  *  V  *  Q  S  G  T  L  C  F  Q  L  P  L  L  S  L  L  *  L  V :   Y  L  I  L  L  L  K  I  D  L  G  L  S  T  E  V  M  N  G  L  S  C  *  I  S  I  S  N  G  Y  F  S  I  E  S  V  H  T  S  A  G  G  A  T  A  *  E  F  *  H  T  P  H  H  G  Q  :  L  T  I  Q  N  Q  T  S  I  S  L  T  L  V  L  R  H  M  L  Y  L  M  V  R  *  S  P   : A  A  I  L  R  R  T  T  Y  E  G  R  *  R  Y  *  E  Q  K  N  I  G  G  K  H  T  S  I  C  G  M  S :   L  L  T  L  N  N  I  L  P  S  A  A  W  P  V  I  F  M  P  M  H  L  M  L  V  F  *  Q  L  I  I  A  :  D  Q  V  M  H  L  L  L  Q  I  T  L  R  L  F  *  K  F  L  R  S  Y  V  L  I  L  R  Y  I  A  Q   : A  N  G  L  L  V  T  E  R  I  W  R  R  I  L  S  R  R  Y  K  Q  K  T  E  R :   S  G  G  H  M  Y  A  W  D  Q  V  I  L  I  P  T  G  T  W  G  C  E  A  L  N  T  V  L  *  C  G  V  C  G  K  K  V  E  Q  V  S  Y  I  G  V  P  T  A  M  R  R  Q  Q  F  L  V  L  R :   L  S  S  G  A  A  F  L  Q  V  M  E  F  Y  S  I  L  V  R  C  S  H  H  L  S  N  L  L  L  H  *  D  *  R  G  S  *  V  A  Y  R :   T  E </first_frame>
            <second_frame>  A  H  R  Y  D  G  R  G  C  F  F  *  P  F  N  P  F  E  N  K  F  D  S  L  G  L  C  A  S  S  Y  P  F  C  P  C  C  D  W   : Y  I  *  Y  C  Y  *  R  S  I  W  G  *  A  R  K  *  *  M  V  *  A  V  R  S  A  F  Q  M  A  T  S  V  S  N  Q  S  I  L  L  Q  V  G  Q  R  H  E  S  F  D  I  H  L  T  M  A  S :   *  P  S  K  I  R  R  V  F  L  *  P  S  S  C  G  I  C  C  T  *  W  S  D  S  P  L  :  R  R  Y  C  E  G  L  L  T  K  G  G  R  D  I  K  N  K  K  T  L  E  E  S  I  L  L  S  V  G  *   : A  S  *  H  *  T  I  Y  F  P  P  P  H  G  Q  *  Y  S  C  L  C  T  *  C  S  Y  S  D  N  L  L  L  R :   T  K  *  C  T  S  C  Y  K  *  L  *  G  F  S  E  S  S  C  V  P  T  S  S  Y  S  D  I  L  H  K  :  R  M  G  Y  W  *  Q  R  G  S  G  E  G  Y  Y  R  G  D  T  N  R  K  R  R   : G  V  V  D  I  C  M  L  G  T  R  *  S  S  S  Q  L  A  L  G  D  A  R  H  S  T  P  C  C  D  V  A  C  V  E  R  R  W  N  R  F  L  I  L  G  C  Q  L  L  *  E  G  N  S  S  *  C  *   : D  *  V  Q  A  R  P  S  S  R  *  W  S  F  I  L  S  W  S  G  V  L  I  I  S  A  T  C  C  F  T  E  T  R  E  A  L  E  W  L  T   : E  Q   </second_frame>
            <third_frame>   P  I  D  M  M  E  E  D  A  F  S  S  L  S  I  R  L  K  I  S  L  T  V  W  D  F  V  L  P  A  T  P  S  V  P  A  V  I  G  :  I  S  D  T  V  I  E  D  R  F  G  V  E  H  G  S  N  E  W  F  E  L  L  D  Q  H  F  K  W  L  L  Q  Y  R  I  S  P  Y  F  C  R  W  G  N  G  M  R  V  L  T  Y  T  S  P  W  P   : A  D  H  P  K  S  D  E  Y  F  S  D  P  R  L  A  A  Y  A  V  P  N  G  P  I  V  P  C :   G  D  I  A  K  D  Y  L  R  R  E  V  E  I  L  R  T  K  K  H  W  R  K  A  Y  F  Y  L  W  D  E  :  P  L  N  I  E  Q  Y  T  S  L  R  R  M  A  S  D  I  H  A  Y  A  P  D  A  R  I  L  T  T  Y  Y  C   : G  P  S  D  A  P  L  A  T  N  N  F  E  A  F  L  K  V  P  A  F  L  R  P  H  T  Q  I  Y  C  T  S :   E  W  V  I  G  N  R  E  D  L  A  K  D  I  I  A  E  I  Q  T  E  N  G  E  :  E  W  W  T  Y  V  C  L  G  P  G  D  P  H  P  N  W  H  L  G  M  R  G  T  Q  H  R  A  V  M  W  R  V  W  K  E  G  G  T  G  F  L  Y  W  G  A  N  C  Y  E  K  A  T  V  P  S  A  E  :  I  K  F  R  R  G  L  P  P  G  D  G  V  L  F  Y  P  G  Q  V  F  S  S  S  Q  Q  P  V  A  S  L  R  L  E  R  L  L  S  G  L  Q  :  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19544" stop="19660"/>
                    <exon start="20139" stop="20307"/>
                    <exon start="20498" stop="20579"/>
                    <exon start="20677" stop="20770"/>
                    <exon start="21453" stop="21549"/>
                    <exon start="22603" stop="22696"/>
                    <exon start="26868" stop="26940"/>
                    <exon start="28139" stop="28312"/>
                    <exon start="28437" stop="28559"/>
                    <exon start="28684" stop="28689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1029</number_coding_nucleotides>
                  <number_encoded_amino_acids>343</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIDMMEEDAFSSLSIRLKISLTVWDFVLPATPSVPAVIGISDTVIEDRFGVEHGSNEWFELLDQHFKWLLQYRISPYFCRWGNGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPNGPIVPCGDIAKDYLRREVEILRTKKHWRKAYFYLWDEPLNIEQYTSLRRMASDIHAYAPDARILTTYYCGPSDAPLATNNFEAFLKVPAFLRPHTQIYCTSEWVIGNREDLAKDIIAEIQTENGEEWWTYVCLGPGDPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVPSAEIKFRRGLPPGDGVLFYPGQVFSSSQQPVASLRLERLLSGLQNR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38433" PGL_stop="41583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38433" e_stop="38827"/>
            <exon e_start="38912" e_stop="39308"/>
            <exon e_start="39407" e_stop="39624"/>
            <exon e_start="40368" e_stop="41583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="0.997"/>
          <exon-intron don_prob="0.959" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.995"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="38433" e_stop="38827" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="38828" i_stop="38911" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="38912" e_stop="39308" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.992">
            <gDNA_intron_boundary i_start="39309" i_stop="39406" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="39407" e_stop="39624" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39625" i_stop="40367" i_length="743"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="40368" e_stop="41583" e_length="1216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38433" stop="38827"/>
              <exon start="38912" stop="39308"/>
              <exon start="39407" stop="39624"/>
              <exon start="40368" stop="41583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39624"/>
              <exon start="40368" stop="41112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41234" stop="41549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGACAGCTTTCAAAAATAGTCTCTTCTCTTTCAAACTCTGTGTGTTCTAATCCAAAAAAACAAAACCGCCGCCATGTATGAACATTAAAGCTCTTCTTCCCATTTTTTTCTCTTCTTCAAGAAAAAAAAAGAACTTTCTTCTTTAGGGAACACAACAATTCCCAAAAATAAGTGTAGAATTTTTCCTAGTTTTGGGAATCGTTTATTGATTTTCTGGTGTAAACTGTGAAGAGGCTGAAAGGGGAGAAAACAAAGTATTAGCTGAAAAACATATGTAAAAATCTGAAGTTTTCTAAGCTATAAATATGGCAGAGATTGAAAAATCAGCTGAAGAATCAATCATACAGCAAAATTTTCCAGTAAAGAGGAAAAGGAATCTTCCTGGAAATCCTG : ATCCAGAAGCAGAAGTGATAGCTCTATCGCCGAGAACTCTTATGGCGACGAACCGATTTGTTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAGAATTTACAGCTTCATCGGAGAGGACACAACTTGCCATGGAAACTGCGGCAACGAACGAGTAATGAAGTGAAAAAACGTGTTTACGTTTGTCCAGAATCGTCATGCGTTCATCATGATCCTTCTAGAGCTTTAGGCGATCTCACTGGAATTAAGAAGCATTTCTGCAGAAAACATGGTGAGAAGAAGTTTAAATGTGAACGTTGCACCAAAAAATACGCTGTTCATTCCGATTGGAAAGCACACATGAAAACTTGTGGTACTAGAGAGTATCGTTGTGATTGTGGAACTTTATTTTCCAG : GAGGGATAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTCAAGAAAGTGCAAGATCTCATCAACCATTAATGGAGGATACAAATGCTGAAGGTGATTTGAAGGTTGATGAAGCTATAAACAAAACGGTGTCGTCTTCATCTAGTCCTCCACCACAACCTTTAACTCCATCAACTAGCGTTCTTTCTCCAGTTCTGTCCATTCAAAGTTCAG : AGTTGCCTGTAGAATATCAAAATCAAGGTGGAGTACAAATACAACAAGCACAGGGTACAACAACACCTGTTTCTACCACCCCTGTCATCACAATTTCCACTGCTGCTGCTAGTGGTCCTAGTAGTAGCAAGGTGTTTGCTAGTGTGTTTCCATCGTCGTCATCAGCTCAGCATGTTAACTCGTCTTACTCGGATATTCTACGTGCTATTGAGACCGAGCAAGTGATGGCTGTAGAGCCCATATCGCTCTCATTGTCATCTTCTCTTTACTTGTCTAATAATAGGGCAAGTTTATTCCAAGAACACACTGGTGGCCACGGCCACGGCCATGGCCAGCATTATGGTTCAGCAACAATGCAGCCAGCATTATCTGCAACTGCATTACTTCAAAAAGCAGCCCAAATGGGGTCAACAACTTCAAACAACTCGTTTCTCCGTGGCCTTGGATTGGCAATGTCACCGAGTACTTCTACACCGGAGGAGAATTCACTAGCAAGGAGGACTAATGCTCTTGGCCATGTGAAGCTAGAGAGCAATATTAATGCAGAGGTACCCGGGCTCGGGATACAACTTCATGGTCATTCAGGATTTACTGACTTGATGATGGGTCCATCCATATCTCATCAGACATCTATGATGTTCGGAAGCAAACCTCCGACTCTTGATTTTCTTGGTTTAGGAAATGGTGCTAGTGGAACTCCATCAAACGGATTTTCAGCGTTTTTAAGCTCAATGGAAGACGGATTTGGTGTTGTAGCTGAGCCTTGGGATGACCCTTCTGATAGAAAACCTGCTATGCTCTAGCTAGAGTTTAGTTGCATTAATGCAACGCCTGTACAAGGGCTTTGCTCGCGCGCTCATCACCACCTACCTACATTTCACATCTCGACACAGTGGAACGTGTAACCCGCCTGTCAGTGAAGCTCTCTATTCACATCCCCCTCAAAGTTTTTGAATTGGAGTTCAGTTTTTTGTTTGATATTTTATACATATGCAATAGTTGATAGGGATAGCTAAGTTATGTTCATAATCTTGATATTGCACCCTTTTGGTCTCTCAACCAAACATCATTATGAGATTTTAGTTTAATTAGGAGAGTATAGTAGATGGATCTAGTAGCTATTAGCTAGGTTTCTAAATTATTATGTAGTAATTATTATGTGAGAGAATAACTAAGTTCACAATGTGGATATTTCTCACTTGGGAAAATTTCTTTA</gDNA_template>
            <first_frame> Y  D  S  F  Q  K  *  S  L  L  F  Q  T  L  C  V  L  I  Q  K  N  K  T  A  A  M  Y  E  H  *  S  S  S  S  H  F  F  L  F  F  K  K  K  K  E  L  S  S  L  G  N  T  T  I  P  K  N  K  C  R  I  F  P  S  F  G  N  R  L  L  I  F  W  C  K  L  *  R  G  *  K  G  R  K  Q  S  I  S  *  K  T  Y  V  K  I  *  S  F  L  S  Y  K  Y  G  R  D  *  K  I  S  *  R  I  N  H  T  A  K  F  S  S  K  E  E  K  E  S  S  W  K  S  * :   S  R  S  R  S  D  S  S  I  A  E  N  S  Y  G  D  E  P  I  C  L  *  D  L  *  Q  R  F  S  K  R  S  E  F  T  A  S  S  E  R  T  Q  L  A  M  E  T  A  A  T  N  E  *  *  S  E  K  T  C  L  R  L  S  R  I  V  M  R  S  S  *  S  F  *  S  F  R  R  S  H  W  N  *  E  A  F  L  Q  K  T  W  *  E  E  V  *  M  *  T  L  H  Q  K  I  R  C  S  F  R  L  E  S  T  H  E  N  L  W  Y  *  R  V  S  L  *  L  W  N  F  I  F  Q  :  E  G  *  L  H  N  S  *  S  I  L  *  C  I  S  S  R  K  C  K  I  S  S  T  I  N  G  G  Y  K  C  *  R  *  F  E  G  *  *  S  Y  K  Q  N  G  V  V  F  I  *  S  S  T  T  T  F  N  S  I  N  *  R  S  F  S  S  S  V  H  S  K  F  R :   V  A  C  R  I  S  K  S  R  W  S  T  N  T  T  S  T  G  Y  N  N  T  C  F  Y  H  P  C  H  H  N  F  H  C  C  C  *  W  S  *  *  *  Q  G  V  C  *  C  V  S  I  V  V  I  S  S  A  C  *  L  V  L  L  G  Y  S  T  C  Y  *  D  R  A  S  D  G  C  R  A  H  I  A  L  I  V  I  F  S  L  L  V  *  *  *  G  K  F  I  P  R  T  H  W  W  P  R  P  R  P  W  P  A  L  W  F  S  N  N  A  A  S  I  I  C  N  C  I  T  S  K  S  S  P  N  G  V  N  N  F  K  Q  L  V  S  P  W  P  W  I  G  N  V  T  E  Y  F  Y  T  G  G  E  F  T  S  K  E  D  *  C  S  W  P  C  E  A  R  E  Q  Y  *  C  R  G  T  R  A  R  D  T  T  S  W  S  F  R  I  Y  *  L  D  D  G  S  I  H  I  S  S  D  I  Y  D  V  R  K  Q  T  S  D  S  *  F  S  W  F  R  K  W  C  *  W  N  S  I  K  R  I  F  S  V  F  K  L  N  G  R  R  I  W  C  C  S  *  A  L  G  *  P  F  *  *  K  T  C  Y  A  L  A  R  V  *  L  H  *  C  N  A  C  T  R  A  L  L  A  R  S  S  P  P  T  Y  I  S  H  L  D  T  V  E  R  V  T  R  L  S  V  K  L  S  I  H  I  P  L  K  V  F  E  L  E  F  S  F  L  F  D  I  L  Y  I  C  N  S  *  *  G  *  L  S  Y  V  H  N  L  D  I  A  P  F  W  S  L  N  Q  T  S  L  *  D  F  S  L  I  R  R  V  *  *  M  D  L  V  A  I  S  *  V  S  K  L  L  C  S  N  Y  Y  V  R  E  *  L  S  S  Q  C  G  Y  F  S  L  G  K  I  S  L </first_frame>
            <second_frame>  M  T  A  F  K  N  S  L  F  S  F  K  L  C  V  F  *  S  K  K  T  K  P  P  P  C  M  N  I  K  A  L  L  P  I  F  F  S  S  S  R  K  K  K  N  F  L  L  *  G  T  Q  Q  F  P  K  I  S  V  E  F  F  L  V  L  G  I  V  Y  *  F  S  G  V  N  C  E  E  A  E  R  G  E  N  K  V  L  A  E  K  H  M  *  K  S  E  V  F  *  A  I  N  M  A  E  I  E  K  S  A  E  E  S  I  I  Q  Q  N  F  P  V  K  R  K  R  N  L  P  G  N  P   : D  P  E  A  E  V  I  A  L  S  P  R  T  L  M  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  R  Q  R  T  S  N  E  V  K  K  R  V  Y  V  C  P  E  S  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  C  R  K  H  G  E  K  K  F  K  C  E  R  C  T  K  K  Y  A  V  H  S  D  W  K  A  H  M  K  T  C  G  T  R  E  Y  R  C  D  C  G  T  L  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  D  A  L  A  Q  E  S  A  R  S  H  Q  P  L  M  E  D  T  N  A  E  G  D  L  K  V  D  E  A  I  N  K  T  V  S  S  S  S  S  P  P  P  Q  P  L  T  P  S  T  S  V  L  S  P  V  L  S  I  Q  S  S   : E  L  P  V  E  Y  Q  N  Q  G  G  V  Q  I  Q  Q  A  Q  G  T  T  T  P  V  S  T  T  P  V  I  T  I  S  T  A  A  A  S  G  P  S  S  S  K  V  F  A  S  V  F  P  S  S  S  S  A  Q  H  V  N  S  S  Y  S  D  I  L  R  A  I  E  T  E  Q  V  M  A  V  E  P  I  S  L  S  L  S  S  S  L  Y  L  S  N  N  R  A  S  L  F  Q  E  H  T  G  G  H  G  H  G  H  G  Q  H  Y  G  S  A  T  M  Q  P  A  L  S  A  T  A  L  L  Q  K  A  A  Q  M  G  S  T  T  S  N  N  S  F  L  R  G  L  G  L  A  M  S  P  S  T  S  T  P  E  E  N  S  L  A  R  R  T  N  A  L  G  H  V  K  L  E  S  N  I  N  A  E  V  P  G  L  G  I  Q  L  H  G  H  S  G  F  T  D  L  M  M  G  P  S  I  S  H  Q  T  S  M  M  F  G  S  K  P  P  T  L  D  F  L  G  L  G  N  G  A  S  G  T  P  S  N  G  F  S  A  F  L  S  S  M  E  D  G  F  G  V  V  A  E  P  W  D  D  P  S  D  R  K  P  A  M  L  *  L  E  F  S  C  I  N  A  T  P  V  Q  G  L  C  S  R  A  H  H  H  L  P  T  F  H  I  S  T  Q  W  N  V  *  P  A  C  Q  *  S  S  L  F  T  S  P  S  K  F  L  N  W  S  S  V  F  C  L  I  F  Y  T  Y  A  I  V  D  R  D  S  *  V  M  F  I  I  L  I  L  H  P  F  G  L  S  T  K  H  H  Y  E  I  L  V  *  L  G  E  Y  S  R  W  I  *  *  L  L  A  R  F  L  N  Y  Y  V  V  I  I  M  *  E  N  N  *  V  H  N  V  D  I  S  H  L  G  K  F  L   </second_frame>
            <third_frame>   *  Q  L  S  K  I  V  S  S  L  S  N  S  V  C  S  N  P  K  K  Q  N  R  R  H  V  *  T  L  K  L  F  F  P  F  F  S  L  L  Q  E  K  K  R  T  F  F  F  R  E  H  N  N  S  Q  K  *  V  *  N  F  S  *  F  W  E  S  F  I  D  F  L  V  *  T  V  K  R  L  K  G  E  K  T  K  Y  *  L  K  N  I  C  K  N  L  K  F  S  K  L  *  I  W  Q  R  L  K  N  Q  L  K  N  Q  S  Y  S  K  I  F  Q  *  R  G  K  G  I  F  L  E  I  L  :  I  Q  K  Q  K  *  *  L  Y  R  R  E  L  L  W  R  R  T  D  L  F  V  R  F  V  T  K  V  F  K  E  I  R  I  Y  S  F  I  G  E  D  T  T  C  H  G  N  C  G  N  E  R  V  M  K  *  K  N  V  F  T  F  V  Q  N  R  H  A  F  I  M  I  L  L  E  L  *  A  I  S  L  E  L  R  S  I  S  A  E  N  M  V  R  R  S  L  N  V  N  V  A  P  K  N  T  L  F  I  P  I  G  K  H  T  *  K  L  V  V  L  E  S  I  V  V  I  V  E  L  Y  F  P   : G  G  I  A  S  *  L  I  E  H  F  V  M  H  *  L  K  K  V  Q  D  L  I  N  H  *  W  R  I  Q  M  L  K  V  I  *  R  L  M  K  L  *  T  K  R  C  R  L  H  L  V  L  H  H  N  L  *  L  H  Q  L  A  F  F  L  Q  F  C  P  F  K  V  Q  :  S  C  L  *  N  I  K  I  K  V  E  Y  K  Y  N  K  H  R  V  Q  Q  H  L  F  L  P  P  L  S  S  Q  F  P  L  L  L  L  V  V  L  V  V  A  R  C  L  L  V  C  F  H  R  R  H  Q  L  S  M  L  T  R  L  T  R  I  F  Y  V  L  L  R  P  S  K  *  W  L  *  S  P  Y  R  S  H  C  H  L  L  F  T  C  L  I  I  G  Q  V  Y  S  K  N  T  L  V  A  T  A  T  A  M  A  S  I  M  V  Q  Q  Q  C  S  Q  H  Y  L  Q  L  H  Y  F  K  K  Q  P  K  W  G  Q  Q  L  Q  T  T  R  F  S  V  A  L  D  W  Q  C  H  R  V  L  L  H  R  R  R  I  H  *  Q  G  G  L  M  L  L  A  M  *  S  *  R  A  I  L  M  Q  R  Y  P  G  S  G  Y  N  F  M  V  I  Q  D  L  L  T  *  *  W  V  H  P  Y  L  I  R  H  L  *  C  S  E  A  N  L  R  L  L  I  F  L  V  *  E  M  V  L  V  E  L  H  Q  T  D  F  Q  R  F  *  A  Q  W  K  T  D  L  V  L  *  L  S  L  G  M  T  L  L  I  E  N  L  L  C  S  S  *  S  L  V  A  L  M  Q  R  L  Y  K  G  F  A  R  A  L  I  T  T  Y  L  H  F  T  S  R  H  S  G  T  C  N  P  P  V  S  E  A  L  Y  S  H  P  P  Q  S  F  *  I  G  V  Q  F  F  V  *  Y  F  I  H  M  Q  *  L  I  G  I  A  K  L  C  S  *  S  *  Y  C  T  L  L  V  S  Q  P  N  I  I  M  R  F  *  F  N  *  E  S  I  V  D  G  S  S  S  Y  *  L  G  F  *  I  I  M  *  *  L  L  C  E  R  I  T  K  F  T  M  W  I  F  L  T  W  E  N  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38731" stop="38827"/>
                    <exon start="38912" stop="39308"/>
                    <exon start="39407" stop="39624"/>
                    <exon start="40368" stop="41170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AINMAEIEKSAEESIIQQNFPVKRKRNLPGNPDPEAEVIALSPRTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKFKCERCTKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARSHQPLMEDTNAEGDLKVDEAINKTVSSSSSPPPQPLTPSTSVLSPVLSIQSSELPVEYQNQGGVQIQQAQGTTTPVSTTPVITISTAAASGPSSSKVFASVFPSSSSAQHVNSSYSDILRAIETEQVMAVEPISLSLSSSLYLSNNRASLFQEHTGGHGHGHGQHYGSATMQPALSATALLQKAAQMGSTTSNNSFLRGLGLAMSPSTSTPEENSLARRTNALGHVKLESNINAEVPGLGIQLHGHSGFTDLMMGPSISHQTSMMFGSKPPTLDFLGLGNGASGTPSNGFSAFLSSMEDGFGVVAEPWDDPSDRKPAML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44834" PGL_stop="45446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44834" e_stop="45446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="44834" e_stop="45446" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44834" stop="45446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44835" stop="45289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGCAGCAACACTCCAGCACACCCTCAAATGAACTTGAAAATGAAAACTATACACCTTCTCGGGCAAAGCTCAATCCCAAAAATAACGCGTTCTGTAATTTGAGCTACTTTTAACCTTAGAGAAAACAGAGCAGCCATGCTCTTTCATTCATGGAGAAAATCTCTATGCAACAGAGGTAACTTCTTCCCTTTAATCCAACTGTTTCCTTTATCGCATAGCCATGTATCTATATTTCATTCTTGCGCTTCTGTTCCCTCTAAATATCCTTCGTTTCGCAAAAAGCCATCGGTTTCTAAGAAGCGTAAAGTTGTAATTTTTAGGGAATTCAGAGATGTGAATAGTTTAAATGACGCCGTTTGTGTTTTTCATCGATTGGTCCGTAAAGAACCAGTTCCTTCTGTTGTAGAGTTAGCAAAATTGTTAAGAGTGATGATTAATATGAAAGAATATTCTGTTGTTATTTCGTTTTTCGGAGAGATGAGGAAGTTAGGGATTCCCTTTGATGAGTATATCTTGACTATTGTGATTAATTCTTTTTGCTTGCTGGGTTGTGCTGAAAATGGTTTTTCGATATTGGGTGTTTTTTTCAAGAGTGGTGTTCAGTTTAATG</gDNA_template>
            <first_frame> F  C  S  N  T  P  A  H  P  Q  M  N  L  K  M  K  T  I  H  L  L  G  Q  S  S  I  P  K  I  T  R  S  V  I  *  A  T  F  N  L  R  E  N  R  A  A  M  L  F  H  S  W  R  K  S  L  C  N  R  G  N  F  F  P  L  I  Q  L  F  P  L  S  H  S  H  V  S  I  F  H  S  C  A  S  V  P  S  K  Y  P  S  F  R  K  K  P  S  V  S  K  K  R  K  V  V  I  F  R  E  F  R  D  V  N  S  L  N  D  A  V  C  V  F  H  R  L  V  R  K  E  P  V  P  S  V  V  E  L  A  K  L  L  R  V  M  I  N  M  K  E  Y  S  V  V  I  S  F  F  G  E  M  R  K  L  G  I  P  F  D  E  Y  I  L  T  I  V  I  N  S  F  C  L  L  G  C  A  E  N  G  F  S  I  L  G  V  F  F  K  S  G  V  Q  F  N  </first_frame>
            <second_frame>  F  A  A  T  L  Q  H  T  L  K  *  T  *  K  *  K  L  Y  T  F  S  G  K  A  Q  S  Q  K  *  R  V  L  *  F  E  L  L  L  T  L  E  K  T  E  Q  P  C  S  F  I  H  G  E  N  L  Y  A  T  E  V  T  S  S  L  *  S  N  C  F  L  Y  R  I  A  M  Y  L  Y  F  I  L  A  L  L  F  P  L  N  I  L  R  F  A  K  S  H  R  F  L  R  S  V  K  L  *  F  L  G  N  S  E  M  *  I  V  *  M  T  P  F  V  F  F  I  D  W  S  V  K  N  Q  F  L  L  L  *  S  *  Q  N  C  *  E  *  *  L  I  *  K  N  I  L  L  L  F  R  F  S  E  R  *  G  S  *  G  F  P  L  M  S  I  S  *  L  L  *  L  I  L  F  A  C  W  V  V  L  K  M  V  F  R  Y  W  V  F  F  S  R  V  V  F  S  L  M </second_frame>
            <third_frame>   L  Q  Q  H  S  S  T  P  S  N  E  L  E  N  E  N  Y  T  P  S  R  A  K  L  N  P  K  N  N  A  F  C  N  L  S  Y  F  *  P  *  R  K  Q  S  S  H  A  L  S  F  M  E  K  I  S  M  Q  Q  R  *  L  L  P  F  N  P  T  V  S  F  I  A  *  P  C  I  Y  I  S  F  L  R  F  C  S  L  *  I  S  F  V  S  Q  K  A  I  G  F  *  E  A  *  S  C  N  F  *  G  I  Q  R  C  E  *  F  K  *  R  R  L  C  F  S  S  I  G  P  *  R  T  S  S  F  C  C  R  V  S  K  I  V  K  S  D  D  *  Y  E  R  I  F  C  C  Y  F  V  F  R  R  D  E  E  V  R  D  S  L  *  *  V  Y  L  D  Y  C  D  *  F  F  L  L  A  G  L  C  *  K  W  F  F  D  I  G  C  F  F  Q  E  W  C  S  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44939" stop="45445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATFNLRENRAAMLFHSWRKSLCNRGNFFPLIQLFPLSHSHVSIFHSCASVPSKYPSFRKKPSVSKKRKVVIFREFRDVNSLNDAVCVFHRLVRKEPVPSVVELAKLLRVMINMKEYSVVISFFGEMRKLGIPFDEYILTIVINSFCLLGCAENGFSILGVFFKSGVQFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48906" PGL_stop="52102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48906" e_stop="49566"/>
            <exon e_start="50456" e_stop="50700"/>
            <exon e_start="51074" e_stop="51174"/>
            <exon e_start="51572" e_stop="52102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48906" e_stop="49566" e_length="661"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50456" e_stop="50700" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50701" i_stop="51073" i_length="373"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="51074" e_stop="51174" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51175" i_stop="51571" i_length="397"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="51572" e_stop="52102" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48906" stop="49186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48961" stop="49566"/>
              <exon start="50456" stop="50700"/>
              <exon start="51074" stop="51174"/>
              <exon start="51572" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49566"/>
              <exon start="50456" stop="50505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48992" stop="49433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48993" stop="49524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49034" stop="49553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51120" stop="51174"/>
              <exon start="51572" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51639" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51639" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCTCTTCCGCCGGCTGACTTTTTAAAGTAGTTTAGTTTATTATCAACTCACTATTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG : GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAG : CATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAGTTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATT : GTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</gDNA_template>
            <first_frame> F  D  L  F  R  R  L  T  F  *  S  S  L  V  Y  Y  Q  L  T  I  Y  S  F  F  Q  H  R  F  P  K  I  T  I  L  I  S  S  A  V  E  R  H  F  F  S  F  P  G  C  R  T  T  G  K  L  K  F  F  S  D  V  S  H  S  F  Y  D  F  A  I  S  S  R  N  V  P  F  Q  V  H  I  L  S  D  L  P  S  I  E  V  R  K  T  L  Q  E  A  R  N  Q  R  S  R  L  P  F  D  L  R  K  H  R  G  N  Q  T  E  D  *  *  S  *  I  E  I  N  S  V  Q  S  Q  H  T  A  S  N  C  S  S  L  L  Q  L  V  R  R  L  R  E  D  F  F  V  V  V  R  V  E  A  P  I  G  Y  F  *  P  G  Y  N  *  R  A  F  H  K  *  S  S  G  *  S  *  I  *  S  T  N  *  A  V  V  W  T  R  R  C  W  F  A  R  *  T  M  G  F  T  *  E  D  C  K  P  G  F  *  H  G  G  C  *   : G  L  G  T  G  Y  C  D  *  C  Y  Q  G  I  E  E  M  G  K  G  K  *  R  E  G  R  I  *  N  R  C  L  Q  R  I  E  *  S  L  S  *  G  Y  I  *  N  S  F  W  E  *  L  *  R  G  E  T  H  I  *  V  A  R  A  T  N  I  S  Y  F  A  G  N  T  K  R  L  P  S  W  I  *  :  H  C  I  K  S  G  K  I  K  L  E  K  K  F  S  E  F  V  R  V  T  T  F  Q  V  Q  R  I  *  M  I  S  R  L :   *  Q  *  Y  S  M  R  H  *  D  S  T  H  R  *  S  H  *  Q  E  E  L  L  K  T  S  S  W  E  T  L  K  F  L  R  I  L  N  F  M  L  H  *  L  L  C  I  M  T  L  R  Y  G  G  K  M  H  W  N  S  T  L  R  D  L  S  S  L  V  S  I  W  L  H  F  S  L  L  H  *  V  Q  E  F  V  L  G  K  T  *  P  W  L  K  P  K  S  S  W  Q  *  *  L  R  I  S  P  L  H  Y  H  L  H  M  F  M  L  Q  P  C  I  L  L  C  S  P  S  M  V  L  L  S  S  L  G  R  F  K  F  K  C  S  Y  S  S  L  S  D  E  F  V  H  *  R  Y  I  L  A  S  I  M  N  K  F  G  S  I  I  *  I  I  H  S  A  L  F   </first_frame>
            <second_frame>  L  I  S  S  A  G  *  L  F  K  V  V  *  F  I  I  N  S  L  F  I  H  F  F  N  I  D  S  P  K  S  Q  F  *  S  P  P  P  W  N  A  T  F  S  H  F  P  A  A  G  P  P  G  N  *  N  S  S  P  M  Y  L  T  V  F  T  I  L  L  F  L  P  V  T  F  L  F  K  F  I  Y  S  V  I  Y  L  P  L  K  F  E  K  H  F  R  K  Q  G  I  R  G  P  G  Y  R  L  I  Y  G  N  T  E  E  I  K  Q  K  I  S  E  A  E  S  K  S  I  P  F  N  H  N  I  L  H  R  I  A  P  H  Y  Y  N  W  S  A  V  Y  G  K  T  F  L  W  W  F  G  S  K  P  R  L  A  I  S  D  P  D  I  I  K  G  L  F  I  N  K  A  V  D  K  V  E  F  D  P  Q  T  K  Q  L  F  G  Q  G  V  V  G  L  R  G  E  Q  W  A  L  H  R  K  I  A  N  Q  A  F  N  M  E  V  V  K  :  A  W  V  P  D  I  V  T  S  V  I  K  A  L  K  K  W  E  K  E  N  E  E  K  E  E  F  E  I  D  V  F  K  E  L  N  D  L  S  A  E  V  I  S  R  T  A  F  G  S  S  F  E  E  G  K  R  I  F  E  L  Q  E  Q  Q  I  S  L  T  L  Q  A  I  R  S  V  Y  L  P  G  F  S :   I  A  S  R  V  A  R  *  S  S  R  R  S  F  P  S  L  *  G  *  Q  P  S  K  C  R  E  S  E  *  F  Q  D   : C  D  N  D  T  Q  *  D  I  E  T  L  P  T  G  S  R  I  D  K  R  N  F  *  R  H  Q  V  G  R  P  *  N  S  C  E  Y  S  I  L  C  C  T  S  C  C  A  S  *  H  *  D  M  G  E  R  C  T  G  I  Q  P  S  E  I  C  R  V  S  *  A  F  G  F  I  F  P  F  C  I  R  S  K  S  L  C  W  A  K  L  S  H  G  *  S  Q  N  H  P  G  N  D  S  *  E  F  L  P  C  I  I  T  F  I  C  S  C  S  N  H  A  S  Y  Y  A  A  P  V  W  C  S  C  P  L  *  E  D  L  S  L  N  V  A  T  R  H  *  V  M  S  L  S  I  D  D  I  S  *  L  Q  L  *  T  S  L  D  R  L  Y  E  S  F  I  L  L  Y  S  </second_frame>
            <third_frame>   *  S  L  P  P  A  D  F  L  K  *  F  S  L  L  S  T  H  Y  L  F  I  F  S  T  S  I  P  Q  N  H  N  F  N  L  L  R  R  G  T  P  L  F  L  I  S  R  L  P  D  H  R  E  T  E  I  L  L  R  C  I  S  Q  F  L  R  F  C  Y  F  F  P  *  R  S  F  S  S  S  Y  T  Q  *  F  T  F  H  *  S  S  K  N  T  S  G  S  K  E  S  E  V  P  A  T  V  *  S  T  E  T  Q  R  K  S  N  R  R  L  V  K  L  N  R  N  Q  F  R  S  I  T  T  Y  C  I  E  L  L  L  I  T  T  T  G  P  P  F  T  G  R  L  F  C  G  G  S  G  R  S  P  D  W  L  F  L  T  R  I  *  L  K  G  F  S  *  I  K  Q  W  I  K  L  N  L  I  H  K  L  S  S  C  L  D  K  A  L  L  V  C  E  V  N  N  G  L  Y  I  G  R  L  Q  T  R  L  L  T  W  R  L  L  R :   L  G  Y  R  I  L  *  L  V  L  S  R  H  *  R  N  G  K  R  K  M  K  R  R  K  N  L  K  *  M  S  S  K  N  *  M  I  S  Q  L  R  L  Y  L  E  Q  L  L  G  V  A  L  K  R  G  N  A  Y  L  S  C  K  S  N  K  Y  L  L  L  C  R  Q  Y  E  A  S  T  F  L  D  L   : A  L  H  Q  E  W  Q  D  K  A  R  E  E  V  F  R  V  C  K  G  N  N  L  P  S  A  E  N  L  N  D  F  K  I  :  V  T  M  I  L  N  E  T  L  R  L  Y  P  P  V  V  A  L  T  R  G  T  S  K  D  I  K  L  G  D  L  E  I  P  A  N  T  Q  F  Y  V  A  L  A  A  V  H  H  D  T  E  I  W  G  K  D  A  L  E  F  N  P  Q  R  F  V  E  S  R  K  H  L  A  S  F  F  P  F  A  L  G  P  R  V  C  V  G  Q  N  L  A  M  V  E  A  K  I  I  L  A  M  I  V  K  N  F  S  L  A  L  S  P  S  Y  V  H  A  P  T  M  H  L  T  M  Q  P  Q  Y  G  A  P  V  L  F  R  K  I  *  V  *  M  *  L  L  V  T  E  *  *  V  C  P  L  T  I  Y  L  S  F  N  Y  E  Q  V  W  I  D  Y  M  N  H  S  F  C  S  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49072" stop="49566"/>
                    <exon start="50456" stop="50700"/>
                    <exon start="51074" stop="51098"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSPMYLTVFTILLFLPVTFLFKFIYSVIYLPLKFEKHFRKQGIRGPGYRLIYGNTEEIKQKISEAESKSIPFNHNILHRIAPHYYNWSAVYGKTFLWWFGSKPRLAISDPDIIKGLFINKAVDKVEFDPQTKQLFGQGVVGLRGEQWALHRKIANQAFNMEVVKAWVPDIVTSVIKALKKWEKENEEKEEFEIDVFKELNDLSAEVISRTAFGSSFEEGKRIFELQEQQISLTLQAIRSVYLPGFSIASRVAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48906" e_stop="49566"/>
            <exon e_start="50456" e_stop="50700"/>
            <exon e_start="50826" e_stop="50918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48906" e_stop="49566" e_length="661"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="49567" i_stop="50455" i_length="889"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50456" e_stop="50700" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50701" i_stop="50825" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50826" e_stop="50918" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48906" stop="49186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49566"/>
              <exon start="50456" stop="50505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48991" stop="49553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48992" stop="49433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48993" stop="49524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49034" stop="49553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49253" stop="49566"/>
              <exon start="50456" stop="50700"/>
              <exon start="50826" stop="50918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49253" stop="49566"/>
              <exon start="50456" stop="50700"/>
              <exon start="50826" stop="50855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCTCTTCCGCCGGCTGACTTTTTAAAGTAGTTTAGTTTATTATCAACTCACTATTTATTCATTTTTTCAACATCGATTCCCCAAAATCACAATTTTAATCTCCTCCGCCGTGGAACGCCACTTTTTCTCATTTCCCGGCTGCCGGACCACCGGGAAACTGAAATTCTTCTCCGATGTATCTCACAGTTTTTACGATTTTGCTATTTCTTCCCGTAACGTTCCTTTTCAAGTTCATATACTCAGTGATTTACCTTCCATTGAAGTTCGAAAAACACTTCAGGAAGCAAGGAATCAGAGGTCCCGGCTACCGTTTGATCTACGGAAACACAGAGGAAATCAAACAGAAGATTAGTGAAGCTGAATCGAAATCAATTCCGTTCAATCACAACATACTGCATCGAATTGCTCCTCATTACTACAACTGGTCCGCCGTTTACGGGAAGACTTTTTTGTGGTGGTTCGGGTCGAAGCCCCGATTGGCTATTTCTGACCCGGATATAATTAAAGGGCTTTTCATAAATAAAGCAGTGGATAAAGTTGAATTTGATCCACAAACTAAGCAGTTGTTTGGACAAGGCGTTGTTGGTTTGCGAGGTGAACAATGGGCTTTACATAGGAAGATTGCAAACCAGGCTTTTAACATGGAGGTTGTTAAG : GCTTGGGTACCGGATATTGTGACTAGTGTTATCAAGGCATTGAAGAAATGGGAAAAGGAAAATGAAGAGAAGGAAGAATTTGAAATAGATGTCTTCAAAGAATTGAATGATCTCTCAGCTGAGGTTATATCTAGAACAGCTTTTGGGAGTAGCTTTGAAGAGGGGAAACGCATATTTGAGTTGCAAGAGCAACAAATATCTCTTACTTTGCAGGCAATACGAAGCGTCTACCTTCCTGGATTTAG : GTATTTGCCCACGAAAAATAACATGATGAGATGGAGAATAGAGAAAGAAACTCGAGAGTCAGTAAGGAGGCTGATTGAGAGTAGTAAAGGGAG</gDNA_template>
            <first_frame> F  D  L  F  R  R  L  T  F  *  S  S  L  V  Y  Y  Q  L  T  I  Y  S  F  F  Q  H  R  F  P  K  I  T  I  L  I  S  S  A  V  E  R  H  F  F  S  F  P  G  C  R  T  T  G  K  L  K  F  F  S  D  V  S  H  S  F  Y  D  F  A  I  S  S  R  N  V  P  F  Q  V  H  I  L  S  D  L  P  S  I  E  V  R  K  T  L  Q  E  A  R  N  Q  R  S  R  L  P  F  D  L  R  K  H  R  G  N  Q  T  E  D  *  *  S  *  I  E  I  N  S  V  Q  S  Q  H  T  A  S  N  C  S  S  L  L  Q  L  V  R  R  L  R  E  D  F  F  V  V  V  R  V  E  A  P  I  G  Y  F  *  P  G  Y  N  *  R  A  F  H  K  *  S  S  G  *  S  *  I  *  S  T  N  *  A  V  V  W  T  R  R  C  W  F  A  R  *  T  M  G  F  T  *  E  D  C  K  P  G  F  *  H  G  G  C  *   : G  L  G  T  G  Y  C  D  *  C  Y  Q  G  I  E  E  M  G  K  G  K  *  R  E  G  R  I  *  N  R  C  L  Q  R  I  E  *  S  L  S  *  G  Y  I  *  N  S  F  W  E  *  L  *  R  G  E  T  H  I  *  V  A  R  A  T  N  I  S  Y  F  A  G  N  T  K  R  L  P  S  W  I  *  :  V  F  A  H  E  K  *  H  D  E  M  E  N  R  E  R  N  S  R  V  S  K  E  A  D  *  E  *  *  R  E </first_frame>
            <second_frame>  L  I  S  S  A  G  *  L  F  K  V  V  *  F  I  I  N  S  L  F  I  H  F  F  N  I  D  S  P  K  S  Q  F  *  S  P  P  P  W  N  A  T  F  S  H  F  P  A  A  G  P  P  G  N  *  N  S  S  P  M  Y  L  T  V  F  T  I  L  L  F  L  P  V  T  F  L  F  K  F  I  Y  S  V  I  Y  L  P  L  K  F  E  K  H  F  R  K  Q  G  I  R  G  P  G  Y  R  L  I  Y  G  N  T  E  E  I  K  Q  K  I  S  E  A  E  S  K  S  I  P  F  N  H  N  I  L  H  R  I  A  P  H  Y  Y  N  W  S  A  V  Y  G  K  T  F  L  W  W  F  G  S  K  P  R  L  A  I  S  D  P  D  I  I  K  G  L  F  I  N  K  A  V  D  K  V  E  F  D  P  Q  T  K  Q  L  F  G  Q  G  V  V  G  L  R  G  E  Q  W  A  L  H  R  K  I  A  N  Q  A  F  N  M  E  V  V  K  :  A  W  V  P  D  I  V  T  S  V  I  K  A  L  K  K  W  E  K  E  N  E  E  K  E  E  F  E  I  D  V  F  K  E  L  N  D  L  S  A  E  V  I  S  R  T  A  F  G  S  S  F  E  E  G  K  R  I  F  E  L  Q  E  Q  Q  I  S  L  T  L  Q  A  I  R  S  V  Y  L  P  G  F  R :   Y  L  P  T  K  N  N  M  M  R  W  R  I  E  K  E  T  R  E  S  V  R  R  L  I  E  S  S  K  G   </second_frame>
            <third_frame>   *  S  L  P  P  A  D  F  L  K  *  F  S  L  L  S  T  H  Y  L  F  I  F  S  T  S  I  P  Q  N  H  N  F  N  L  L  R  R  G  T  P  L  F  L  I  S  R  L  P  D  H  R  E  T  E  I  L  L  R  C  I  S  Q  F  L  R  F  C  Y  F  F  P  *  R  S  F  S  S  S  Y  T  Q  *  F  T  F  H  *  S  S  K  N  T  S  G  S  K  E  S  E  V  P  A  T  V  *  S  T  E  T  Q  R  K  S  N  R  R  L  V  K  L  N  R  N  Q  F  R  S  I  T  T  Y  C  I  E  L  L  L  I  T  T  T  G  P  P  F  T  G  R  L  F  C  G  G  S  G  R  S  P  D  W  L  F  L  T  R  I  *  L  K  G  F  S  *  I  K  Q  W  I  K  L  N  L  I  H  K  L  S  S  C  L  D  K  A  L  L  V  C  E  V  N  N  G  L  Y  I  G  R  L  Q  T  R  L  L  T  W  R  L  L  R :   L  G  Y  R  I  L  *  L  V  L  S  R  H  *  R  N  G  K  R  K  M  K  R  R  K  N  L  K  *  M  S  S  K  N  *  M  I  S  Q  L  R  L  Y  L  E  Q  L  L  G  V  A  L  K  R  G  N  A  Y  L  S  C  K  S  N  K  Y  L  L  L  C  R  Q  Y  E  A  S  T  F  L  D  L   : G  I  C  P  R  K  I  T  *  *  D  G  E  *  R  K  K  L  E  S  Q  *  G  G  *  L  R  V  V  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49072" stop="49566"/>
                    <exon start="50456" stop="50700"/>
                    <exon start="50826" stop="50916"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSPMYLTVFTILLFLPVTFLFKFIYSVIYLPLKFEKHFRKQGIRGPGYRLIYGNTEEIKQKISEAESKSIPFNHNILHRIAPHYYNWSAVYGKTFLWWFGSKPRLAISDPDIIKGLFINKAVDKVEFDPQTKQLFGQGVVGLRGEQWALHRKIANQAFNMEVVKAWVPDIVTSVIKALKKWEKENEEKEEFEIDVFKELNDLSAEVISRTAFGSSFEEGKRIFELQEQQISLTLQAIRSVYLPGFRYLPTKNNMMRWRIEKETRESVRRLIESSKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51011" e_stop="51174"/>
            <exon e_start="51572" e_stop="52102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51011" e_stop="51174" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51175" i_stop="51571" i_length="397"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51572" e_stop="52102" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51011" stop="51174"/>
              <exon start="51572" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51120" stop="51174"/>
              <exon start="51572" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51639" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51639" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTACTTTGCTGGGAAGGAAACTACTTCTGTCTTATTAACTTGGACACTTCTTCTTCTAGCATTGCATCAAGAGTGGCAAGATAAAGCTCGAGAAGAAGTTTTCCGAGTTTGTAAGGGTAACAACCTTCCAAGTGCAGAGAATCTGAATGATTTCAAGATT : GTGACAATGATACTCAATGAGACATTGAGACTCTACCCACCGGTAGTCGCATTGACAAGAGGAACTTCTAAAGACATCAAGTTGGGAGACCTTGAAATTCCTGCGAATACTCAATTTTATGTTGCACTAGCTGCTGTGCATCATGACACTGAGATATGGGGGAAAGATGCACTGGAATTCAACCCTCAGAGATTTGTCGAGTCTCGTAAGCATTTGGCTTCATTTTTCCCTTTTGCATTAGGTCCAAGAGTTTGTGTTGGGCAAAACTTAGCCATGGTTGAAGCCAAAATCATCCTGGCAATGATAGTTAAGAATTTCTCCCTTGCATTATCACCTTCATATGTTCATGCTCCAACCATGCATCTTACTATGCAGCCCCAGTATGGTGCTCCTGTCCTCTTTAGGAAGATTTAAGTTTAAATGTAGCTACTCGTCACTGAGTGATGAGTTTGTCCATTGACGATATATCTTAGCTTCAATTATGAACAAGTTTGGATCGATTATATGAATCATTCATTCTGCTCTATTCAT</gDNA_template>
            <first_frame> H  F  T  L  L  G  R  K  L  L  L  S  Y  *  L  G  H  F  F  F  *  H  C  I  K  S  G  K  I  K  L  E  K  K  F  S  E  F  V  R  V  T  T  F  Q  V  Q  R  I  *  M  I  S  R  L :   *  Q  *  Y  S  M  R  H  *  D  S  T  H  R  *  S  H  *  Q  E  E  L  L  K  T  S  S  W  E  T  L  K  F  L  R  I  L  N  F  M  L  H  *  L  L  C  I  M  T  L  R  Y  G  G  K  M  H  W  N  S  T  L  R  D  L  S  S  L  V  S  I  W  L  H  F  S  L  L  H  *  V  Q  E  F  V  L  G  K  T  *  P  W  L  K  P  K  S  S  W  Q  *  *  L  R  I  S  P  L  H  Y  H  L  H  M  F  M  L  Q  P  C  I  L  L  C  S  P  S  M  V  L  L  S  S  L  G  R  F  K  F  K  C  S  Y  S  S  L  S  D  E  F  V  H  *  R  Y  I  L  A  S  I  M  N  K  F  G  S  I  I  *  I  I  H  S  A  L  F   </first_frame>
            <second_frame>  I  L  L  C  W  E  G  N  Y  F  C  L  I  N  L  D  T  S  S  S  S  I  A  S  R  V  A  R  *  S  S  R  R  S  F  P  S  L  *  G  *  Q  P  S  K  C  R  E  S  E  *  F  Q  D   : C  D  N  D  T  Q  *  D  I  E  T  L  P  T  G  S  R  I  D  K  R  N  F  *  R  H  Q  V  G  R  P  *  N  S  C  E  Y  S  I  L  C  C  T  S  C  C  A  S  *  H  *  D  M  G  E  R  C  T  G  I  Q  P  S  E  I  C  R  V  S  *  A  F  G  F  I  F  P  F  C  I  R  S  K  S  L  C  W  A  K  L  S  H  G  *  S  Q  N  H  P  G  N  D  S  *  E  F  L  P  C  I  I  T  F  I  C  S  C  S  N  H  A  S  Y  Y  A  A  P  V  W  C  S  C  P  L  *  E  D  L  S  L  N  V  A  T  R  H  *  V  M  S  L  S  I  D  D  I  S  *  L  Q  L  *  T  S  L  D  R  L  Y  E  S  F  I  L  L  Y  S  </second_frame>
            <third_frame>   F  Y  F  A  G  K  E  T  T  S  V  L  L  T  W  T  L  L  L  L  A  L  H  Q  E  W  Q  D  K  A  R  E  E  V  F  R  V  C  K  G  N  N  L  P  S  A  E  N  L  N  D  F  K  I  :  V  T  M  I  L  N  E  T  L  R  L  Y  P  P  V  V  A  L  T  R  G  T  S  K  D  I  K  L  G  D  L  E  I  P  A  N  T  Q  F  Y  V  A  L  A  A  V  H  H  D  T  E  I  W  G  K  D  A  L  E  F  N  P  Q  R  F  V  E  S  R  K  H  L  A  S  F  F  P  F  A  L  G  P  R  V  C  V  G  Q  N  L  A  M  V  E  A  K  I  I  L  A  M  I  V  K  N  F  S  L  A  L  S  P  S  Y  V  H  A  P  T  M  H  L  T  M  Q  P  Q  Y  G  A  P  V  L  F  R  K  I  *  V  *  M  *  L  L  V  T  E  *  *  V  C  P  L  T  I  Y  L  S  F  N  Y  E  Q  V  W  I  D  Y  M  N  H  S  F  C  S  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51013" stop="51174"/>
                    <exon start="51572" stop="51985"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYFAGKETTSVLLTWTLLLLALHQEWQDKAREEVFRVCKGNNLPSAENLNDFKIVTMILNETLRLYPPVVALTRGTSKDIKLGDLEIPANTQFYVALAAVHHDTEIWGKDALEFNPQRFVESRKHLASFFPFALGPRVCVGQNLAMVEAKIILAMIVKNFSLALSPSYVHAPTMHLTMQPQYGAPVLFRKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53661" PGL_stop="55386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53661" e_stop="53806"/>
            <exon e_start="55028" e_stop="55386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.281" acc_prob="0.998" e_score="0.959"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="53661" e_stop="53806" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.281" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53807" i_stop="55027" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="55028" e_stop="55386" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53661" stop="53806"/>
              <exon start="55028" stop="55386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGTTTCCATTGGGTATATATAGGGTTTTGTTGGTGAAATGAAAAGTTTTTTGAGTTGAACATTTTAGCTCCAACTCAATAGAACTTATTTGAAGAAGATTGGAATTTTTTTGATTTTTTTTTTGATTTTTTTGGATTGAAAAG : GTGGTTATGTTGTTTTCAAGCGAAGACCAAATTGATGTGTATTAACAGACGTTTGGGAGTACTGATATTTCCTGTGTTCTGTGATACTGGTTGTGTTTCTCTTATAAACGAGTGCGAGCAAATTTGTTGTAGTTGATAAACCAATATGCCTAGTAATTATCTTTTTAGAGTAGGTGGTGCATTGTGTCAGGGAATTAGGAAATCCATTTCTGGGCAAGAAAGGGGGCTTCAATTGGTGGAGATTTTTTCTGAAGAGCGGTTGTTGTTCGGGAAGTCCTTCTGTTCTGTGCCATCTGCAGGATTGTCTGACCTGCATGTGTTTGTAAGGCCTGGAGCTTTTGCTGCAGCACCGACAAATT</gDNA_template>
            <first_frame> R  S  F  H  W  V  Y  I  G  F  C  W  *  N  E  K  F  F  E  L  N  I  L  A  P  T  Q  *  N  L  F  E  E  D  W  N  F  F  D  F  F  F  D  F  F  G  L  K  R :   W  L  C  C  F  Q  A  K  T  K  L  M  C  I  N  R  R  L  G  V  L  I  F  P  V  F  C  D  T  G  C  V  S  L  I  N  E  C  E  Q  I  C  C  S  *  *  T  N  M  P  S  N  Y  L  F  R  V  G  G  A  L  C  Q  G  I  R  K  S  I  S  G  Q  E  R  G  L  Q  L  V  E  I  F  S  E  E  R  L  L  F  G  K  S  F  C  S  V  P  S  A  G  L  S  D  L  H  V  F  V  R  P  G  A  F  A  A  A  P  T  N  </first_frame>
            <second_frame>  E  V  S  I  G  Y  I  *  G  F  V  G  E  M  K  S  F  L  S  *  T  F  *  L  Q  L  N  R  T  Y  L  K  K  I  G  I  F  L  I  F  F  L  I  F  L  D  *  K   : G  G  Y  V  V  F  K  R  R  P  N  *  C  V  L  T  D  V  W  E  Y  *  Y  F  L  C  S  V  I  L  V  V  F  L  L  *  T  S  A  S  K  F  V  V  V  D  K  P  I  C  L  V  I  I  F  L  E  *  V  V  H  C  V  R  E  L  G  N  P  F  L  G  K  K  G  G  F  N  W  W  R  F  F  L  K  S  G  C  C  S  G  S  P  S  V  L  C  H  L  Q  D  C  L  T  C  M  C  L  *  G  L  E  L  L  L  Q  H  R  Q  I </second_frame>
            <third_frame>   K  F  P  L  G  I  Y  R  V  L  L  V  K  *  K  V  F  *  V  E  H  F  S  S  N  S  I  E  L  I  *  R  R  L  E  F  F  *  F  F  F  *  F  F  W  I  E  K  :  V  V  M  L  F  S  S  E  D  Q  I  D  V  Y  *  Q  T  F  G  S  T  D  I  S  C  V  L  *  Y  W  L  C  F  S  Y  K  R  V  R  A  N  L  L  *  L  I  N  Q  Y  A  *  *  L  S  F  *  S  R  W  C  I  V  S  G  N  *  E  I  H  F  W  A  R  K  G  A  S  I  G  G  D  F  F  *  R  A  V  V  V  R  E  V  L  L  F  C  A  I  C  R  I  V  *  P  A  C  V  C  K  A  W  S  F  C  C  S  T  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55167" stop="55385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNMPSNYLFRVGGALCQGIRKSISGQERGLQLVEIFSEERLLFGKSFCSVPSAGLSDLHVFVRPGAFAAAPTN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53745" stop="53806"/>
                    <exon start="55028" stop="55163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFEEDWNFFDFFFDFFGLKRWLCCFQAKTKLMCINRRLGVLIFPVFCDTGCVSLINECEQICCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60726" PGL_stop="63008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60726" e_stop="60918"/>
            <exon e_start="61694" e_stop="63008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="0.995"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="60726" e_stop="60918" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60919" i_stop="61693" i_length="775"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="61694" e_stop="63008" e_length="1315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60726" stop="60918"/>
              <exon start="61694" stop="63008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62112" stop="62740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62680" stop="62991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCTTGAAAAGTGAAGAGAAAATGGCGGGTCGTAGGGAGAAGTATGGTCAATCTATAAGAGGATCTCGAATTGCTGGAGCAATTGCGATCGGAGTTTTGTTGGGTTGTGTGTTTGCTTTCTTGTATCCTAATGGATTTTTTTCTCCCGATCCAAGGTCTCAAAGTCACCCTGTTTCTAAATCTAATCTTCAG : GTTGACTTGCCCAACTGTGAATCCACGGAGGGGGTAAACATGATGAAATCTGAATATAGGAAGTTGACTGAAAAGAATGCAGAGTTGCAAAAGCAGGTGAGAGAGCTAAATCAAAAGCTTCAGGCGGCTCAGCAGGGAAATGGTCGTACACAGGAGCAACTGGTGGTGTCGAGTCAACCTCAGAAAGCTGGACCTTTTGGAACTGTCAAAAGTTTGAGAACTAACCCTCCTGTTATGCCTGATGAGTCAGTGAACCCAAGATTAGCAAAGCTCTTGGCAGAGATTGCAGTTGGCAAAGAGGTCATAGTTGCACTTGCTAATTCAAATGTGAAATCCATGTTGGAGGTTTGGTTCAACAGTATTAAAAAAGTGGGTATCCCCAATTATCTGGTCGTGGCTTTAGATGACGCTATAGTGGAGTTCTGCAAGGAAAATGATGTCCCAGTTTATAAAAGGGACCCTGATGAGAATGTTGATTTTATTGGAAAAAGTGGAGGCAACCATGCTGTCTCAGGGTTGAAGTTCCGAATTTTGAGGGAATTTTTGCAGCTTGGTTACGGTGTCCTCCTGTCTGATGTCGATATTGTGTATTTGCAAAATCCTTTTGATCATTTATATCGTGATTCAGATGTTGAATCAATGTCAGATGGTCACAATAATATGACAGCTTATGGTTATAATGATGTTTTTGATGAACCATCAATGGGTTGGGCTCGATATGCACATACAATGAGGATATGGGTTTATAATTCTGGTTTCTTTTATATTCGGCCAACAATTCCTTCAATTGAGCTCTTAGATCGGGTTGCTGATCGGCTTACTACTCAGCCAAATTCCTGGGACCAGGCAGTTTTCAATGAAGAGCTGGCTTTTCCATCACATCCTGGGTATATTGGCCTTTACGCTTCCAGGAGAACAATGGATATCTACCTGTTCATGAATAGCAAGGTCCTATTCAAGACTGTAAGAAAAGATGCTAATCTGAAGAAGTTGAAACCAGTTATAGTTCACGTTAACTATCACCCGGACAAATTTCCTAGAATGAAAGCAGTTGTTGAGTACTATGTCAACGGCAAGCAGGATGCTCTGGATGCATTCCCAGATGGTTCAGTATAGTAGCAGCAGCTGAAATGGACCTTTAATTGAGATCTAGGCCAGTGATATTCTATGTCTTGCTATTTGTCTTTTCATACAGGTAGGCTCAGTTGATTCCCCTTTTGGATCAATGTGTAATACCAACCTCTTTTTTGAGAACTCAATGTGTAATACCAACTTCTTATCAACTACATTCAGAACTTGCATCTCTTTCACCACC</gDNA_template>
            <first_frame> C  L  E  K  *  R  E  N  G  G  S  *  G  E  V  W  S  I  Y  K  R  I  S  N  C  W  S  N  C  D  R  S  F  V  G  L  C  V  C  F  L  V  S  *  W  I  F  F  S  R  S  K  V  S  K  S  P  C  F  *  I  *  S  S   : G  *  L  A  Q  L  *  I  H  G  G  G  K  H  D  E  I  *  I  *  E  V  D  *  K  E  C  R  V  A  K  A  G  E  R  A  K  S  K  A  S  G  G  S  A  G  K  W  S  Y  T  G  A  T  G  G  V  E  S  T  S  E  S  W  T  F  W  N  C  Q  K  F  E  N  *  P  S  C  Y  A  *  *  V  S  E  P  K  I  S  K  A  L  G  R  D  C  S  W  Q  R  G  H  S  C  T  C  *  F  K  C  E  I  H  V  G  G  L  V  Q  Q  Y  *  K  S  G  Y  P  Q  L  S  G  R  G  F  R  *  R  Y  S  G  V  L  Q  G  K  *  C  P  S  L  *  K  G  P  *  *  E  C  *  F  Y  W  K  K  W  R  Q  P  C  C  L  R  V  E  V  P  N  F  E  G  I  F  A  A  W  L  R  C  P  P  V  *  C  R  Y  C  V  F  A  K  S  F  *  S  F  I  S  *  F  R  C  *  I  N  V  R  W  S  Q  *  Y  D  S  L  W  L  *  *  C  F  *  *  T  I  N  G  L  G  S  I  C  T  Y  N  E  D  M  G  L  *  F  W  F  L  L  Y  S  A  N  N  S  F  N  *  A  L  R  S  G  C  *  S  A  Y  Y  S  A  K  F  L  G  P  G  S  F  Q  *  R  A  G  F  S  I  T  S  W  V  Y  W  P  L  R  F  Q  E  N  N  G  Y  L  P  V  H  E  *  Q  G  P  I  Q  D  C  K  K  R  C  *  S  E  E  V  E  T  S  Y  S  S  R  *  L  S  P  G  Q  I  S  *  N  E  S  S  C  *  V  L  C  Q  R  Q  A  G  C  S  G  C  I  P  R  W  F  S  I  V  A  A  A  E  M  D  L  *  L  R  S  R  P  V  I  F  Y  V  L  L  F  V  F  S  Y  R  *  A  Q  L  I  P  L  L  D  Q  C  V  I  P  T  S  F  L  R  T  Q  C  V  I  P  T  S  Y  Q  L  H  S  E  L  A  S  L  S  P   </first_frame>
            <second_frame>  V  L  K  S  E  E  K  M  A  G  R  R  E  K  Y  G  Q  S  I  R  G  S  R  I  A  G  A  I  A  I  G  V  L  L  G  C  V  F  A  F  L  Y  P  N  G  F  F  S  P  D  P  R  S  Q  S  H  P  V  S  K  S  N  L  Q  :  V  D  L  P  N  C  E  S  T  E  G  V  N  M  M  K  S  E  Y  R  K  L  T  E  K  N  A  E  L  Q  K  Q  V  R  E  L  N  Q  K  L  Q  A  A  Q  Q  G  N  G  R  T  Q  E  Q  L  V  V  S  S  Q  P  Q  K  A  G  P  F  G  T  V  K  S  L  R  T  N  P  P  V  M  P  D  E  S  V  N  P  R  L  A  K  L  L  A  E  I  A  V  G  K  E  V  I  V  A  L  A  N  S  N  V  K  S  M  L  E  V  W  F  N  S  I  K  K  V  G  I  P  N  Y  L  V  V  A  L  D  D  A  I  V  E  F  C  K  E  N  D  V  P  V  Y  K  R  D  P  D  E  N  V  D  F  I  G  K  S  G  G  N  H  A  V  S  G  L  K  F  R  I  L  R  E  F  L  Q  L  G  Y  G  V  L  L  S  D  V  D  I  V  Y  L  Q  N  P  F  D  H  L  Y  R  D  S  D  V  E  S  M  S  D  G  H  N  N  M  T  A  Y  G  Y  N  D  V  F  D  E  P  S  M  G  W  A  R  Y  A  H  T  M  R  I  W  V  Y  N  S  G  F  F  Y  I  R  P  T  I  P  S  I  E  L  L  D  R  V  A  D  R  L  T  T  Q  P  N  S  W  D  Q  A  V  F  N  E  E  L  A  F  P  S  H  P  G  Y  I  G  L  Y  A  S  R  R  T  M  D  I  Y  L  F  M  N  S  K  V  L  F  K  T  V  R  K  D  A  N  L  K  K  L  K  P  V  I  V  H  V  N  Y  H  P  D  K  F  P  R  M  K  A  V  V  E  Y  Y  V  N  G  K  Q  D  A  L  D  A  F  P  D  G  S  V  *  *  Q  Q  L  K  W  T  F  N  *  D  L  G  Q  *  Y  S  M  S  C  Y  L  S  F  H  T  G  R  L  S  *  F  P  F  W  I  N  V  *  Y  Q  P  L  F  *  E  L  N  V  *  Y  Q  L  L  I  N  Y  I  Q  N  L  H  L  F  H  H  </second_frame>
            <third_frame>   S  *  K  V  K  R  K  W  R  V  V  G  R  S  M  V  N  L  *  E  D  L  E  L  L  E  Q  L  R  S  E  F  C  W  V  V  C  L  L  S  C  I  L  M  D  F  F  L  P  I  Q  G  L  K  V  T  L  F  L  N  L  I  F  R :   L  T  C  P  T  V  N  P  R  R  G  *  T  *  *  N  L  N  I  G  S  *  L  K  R  M  Q  S  C  K  S  R  *  E  S  *  I  K  S  F  R  R  L  S  R  E  M  V  V  H  R  S  N  W  W  C  R  V  N  L  R  K  L  D  L  L  E  L  S  K  V  *  E  L  T  L  L  L  C  L  M  S  Q  *  T  Q  D  *  Q  S  S  W  Q  R  L  Q  L  A  K  R  S  *  L  H  L  L  I  Q  M  *  N  P  C  W  R  F  G  S  T  V  L  K  K  W  V  S  P  I  I  W  S  W  L  *  M  T  L  *  W  S  S  A  R  K  M  M  S  Q  F  I  K  G  T  L  M  R  M  L  I  L  L  E  K  V  E  A  T  M  L  S  Q  G  *  S  S  E  F  *  G  N  F  C  S  L  V  T  V  S  S  C  L  M  S  I  L  C  I  C  K  I  L  L  I  I  Y  I  V  I  Q  M  L  N  Q  C  Q  M  V  T  I  I  *  Q  L  M  V  I  M  M  F  L  M  N  H  Q  W  V  G  L  D  M  H  I  Q  *  G  Y  G  F  I  I  L  V  S  F  I  F  G  Q  Q  F  L  Q  L  S  S  *  I  G  L  L  I  G  L  L  L  S  Q  I  P  G  T  R  Q  F  S  M  K  S  W  L  F  H  H  I  L  G  I  L  A  F  T  L  P  G  E  Q  W  I  S  T  C  S  *  I  A  R  S  Y  S  R  L  *  E  K  M  L  I  *  R  S  *  N  Q  L  *  F  T  L  T  I  T  R  T  N  F  L  E  *  K  Q  L  L  S  T  M  S  T  A  S  R  M  L  W  M  H  S  Q  M  V  Q  Y  S  S  S  S  *  N  G  P  L  I  E  I  *  A  S  D  I  L  C  L  A  I  C  L  F  I  Q  V  G  S  V  D  S  P  F  G  S  M  C  N  T  N  L  F  F  E  N  S  M  C  N  T  N  F  L  S  T  T  F  R  T  C  I  S  F  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60727" stop="60918"/>
                    <exon start="61694" stop="62809"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLKSEEKMAGRREKYGQSIRGSRIAGAIAIGVLLGCVFAFLYPNGFFSPDPRSQSHPVSKSNLQVDLPNCESTEGVNMMKSEYRKLTEKNAELQKQVRELNQKLQAAQQGNGRTQEQLVVSSQPQKAGPFGTVKSLRTNPPVMPDESVNPRLAKLLAEIAVGKEVIVALANSNVKSMLEVWFNSIKKVGIPNYLVVALDDAIVEFCKENDVPVYKRDPDENVDFIGKSGGNHAVSGLKFRILREFLQLGYGVLLSDVDIVYLQNPFDHLYRDSDVESMSDGHNNMTAYGYNDVFDEPSMGWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVADRLTTQPNSWDQAVFNEELAFPSHPGYIGLYASRRTMDIYLFMNSKVLFKTVRKDANLKKLKPVIVHVNYHPDKFPRMKAVVEYYVNGKQDALDAFPDGSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="66681" PGL_stop="65247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66681" e_stop="65247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="66681" e_stop="65247" e_length="1435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66681" stop="66097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66567" stop="66079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66567" stop="66318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66081" stop="65247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65962" stop="65565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTATGTTTCAGAATATAATCAATCACCAAGAAAGATTTGATTATGATCGCATCCCAGCAGTTGTGGAACTGTGCTTGCAAGCAGGGGCTATTCCAAGTGAAGAAATTGTATGCGGAAGTAGTTTGCCCTCTAGTGTTCCTTTTCAAGCTGACTCTTTGTCTGACGATGATTTGATGTTGTTGGGAAGAGAAACCTTGAAGGCATGGGAAGCACTTAGATCTGGAGTTCAGAGGCTATTGTTAGTATATCCAGCAAAGGTCTGTGAACATTGCTCAGAAGTTCATATAGGGCCTTCTGGACATAAGGCTCGTCTTTGTGGTGTATTTAAGTTTGAAAGTTGGCGAGGAAGTCACTTTTGGAAGAAGGCAGAAGTGGATCATTTGGTTCCTTCAAAAACCGTGTGGTACCGCCGACCCCAGGATCCTCCATTACTTCTGGATGACGGGCGGAACTACTATGGGCATGCTCCCGCTGTTGTTGATCTGTGTACTAAGGCTGGTATTATTGCTCCTTCCAAGTACCATTGCATGATGAAACTTGAAGGTCTATCAGCCCCGTCTCTGTGAAAGGAATGATGGGATCTTTCCTGCTCTTATTAATGCAGTTCAAAAAAACAACCGCAAGGTGGGTCTAAATTGGTTAATTCTTCTGAAGCCAAACTTACTTTTGTTATTCAGGCAACCCTAAAACTTGGATATAGAATGAAGATTGGGTGGGGTTGTGTTGCGCTCAAAATCGTCTCTGACACCAAAATATTTCATGAGGACAGGAATATCTTGTTGATATCCACAGGAGAATTACTTGTGTAATACTTGAGCAATTCTCATCAATGGAGCATTATATTTTGGTTGACTAGCCACTTTAATCCGTCTCTGGGTTCTTCAAGATCCAAATAGGGAAAATCGAAAGGAAGTACATTGATGCAGAAGGAAGAGAAAATGCAGCAGAAAGTGTACTCCTCATGGTCAGGAACACCATTTCTCAGGCAATATAGTTCGCATTGCATAGATTATGCGTCTTTAAGCATTTTTCAGTTAAAATATACATCAACTTTTTATGAGCGAAAGCAGTTTTAAGTTGATTGTCTCACAACAACTGTTCTTCAAGATAACTTTTGAGACTCCTCTCTGCTTTAGTGGAGTGAGGATGAAGCCTAACTAGGCTACGGAAATTGTCATCCTGTGTGAGATTCCTATACTTCCTGGTGATATGTAACATGATATCTGTAAGCAGGTGATTTGCAGTGAAATCGAAGTGGTGGATCTCTGTTTCGAAGAAACTATCTTTACAGGTTGAGTGTGTCCTCCAATTGAGTGTGTCCTCCAAGTGTTAAGAGTCATTTTGTAATAGATACTATCAACCCAGTGTCGTGTCTTTTGAACTCTTGAGTTGTTTTAATACATATAGTAACTTTTGTCGGTATAATGCAATAGG</gDNA_template>
            <first_frame> T  M  F  Q  N  I  I  N  H  Q  E  R  F  D  Y  D  R  I  P  A  V  V  E  L  C  L  Q  A  G  A  I  P  S  E  E  I  V  C  G  S  S  L  P  S  S  V  P  F  Q  A  D  S  L  S  D  D  D  L  M  L  L  G  R  E  T  L  K  A  W  E  A  L  R  S  G  V  Q  R  L  L  L  V  Y  P  A  K  V  C  E  H  C  S  E  V  H  I  G  P  S  G  H  K  A  R  L  C  G  V  F  K  F  E  S  W  R  G  S  H  F  W  K  K  A  E  V  D  H  L  V  P  S  K  T  V  W  Y  R  R  P  Q  D  P  P  L  L  L  D  D  G  R  N  Y  Y  G  H  A  P  A  V  V  D  L  C  T  K  A  G  I  I  A  P  S  K  Y  H  C  M  M  K  L  E  G  L  S  A  P  S  L  *  K  E  *  W  D  L  S  C  S  Y  *  C  S  S  K  K  Q  P  Q  G  G  S  K  L  V  N  S  S  E  A  K  L  T  F  V  I  Q  A  T  L  K  L  G  Y  R  M  K  I  G  W  G  C  V  A  L  K  I  V  S  D  T  K  I  F  H  E  D  R  N  I  L  L  I  S  T  G  E  L  L  V  *  Y  L  S  N  S  H  Q  W  S  I  I  F  W  L  T  S  H  F  N  P  S  L  G  S  S  R  S  K  *  G  K  S  K  G  S  T  L  M  Q  K  E  E  K  M  Q  Q  K  V  Y  S  S  W  S  G  T  P  F  L  R  Q  Y  S  S  H  C  I  D  Y  A  S  L  S  I  F  Q  L  K  Y  T  S  T  F  Y  E  R  K  Q  F  *  V  D  C  L  T  T  T  V  L  Q  D  N  F  *  D  S  S  L  L  *  W  S  E  D  E  A  *  L  G  Y  G  N  C  H  P  V  *  D  S  Y  T  S  W  *  Y  V  T  *  Y  L  *  A  G  D  L  Q  *  N  R  S  G  G  S  L  F  R  R  N  Y  L  Y  R  L  S  V  S  S  N  *  V  C  P  P  S  V  K  S  H  F  V  I  D  T  I  N  P  V  S  C  L  L  N  S  *  V  V  L  I  H  I  V  T  F  V  G  I  M  Q  *  </first_frame>
            <second_frame>  L  C  F  R  I  *  S  I  T  K  K  D  L  I  M  I  A  S  Q  Q  L  W  N  C  A  C  K  Q  G  L  F  Q  V  K  K  L  Y  A  E  V  V  C  P  L  V  F  L  F  K  L  T  L  C  L  T  M  I  *  C  C  W  E  E  K  P  *  R  H  G  K  H  L  D  L  E  F  R  G  Y  C  *  Y  I  Q  Q  R  S  V  N  I  A  Q  K  F  I  *  G  L  L  D  I  R  L  V  F  V  V  Y  L  S  L  K  V  G  E  E  V  T  F  G  R  R  Q  K  W  I  I  W  F  L  Q  K  P  C  G  T  A  D  P  R  I  L  H  Y  F  W  M  T  G  G  T  T  M  G  M  L  P  L  L  L  I  C  V  L  R  L  V  L  L  L  L  P  S  T  I  A  *  *  N  L  K  V  Y  Q  P  R  L  C  E  R  N  D  G  I  F  P  A  L  I  N  A  V  Q  K  N  N  R  K  V  G  L  N  W  L  I  L  L  K  P  N  L  L  L  L  F  R  Q  P  *  N  L  D  I  E  *  R  L  G  G  V  V  L  R  S  K  S  S  L  T  P  K  Y  F  M  R  T  G  I  S  C  *  Y  P  Q  E  N  Y  L  C  N  T  *  A  I  L  I  N  G  A  L  Y  F  G  *  L  A  T  L  I  R  L  W  V  L  Q  D  P  N  R  E  N  R  K  E  V  H  *  C  R  R  K  R  K  C  S  R  K  C  T  P  H  G  Q  E  H  H  F  S  G  N  I  V  R  I  A  *  I  M  R  L  *  A  F  F  S  *  N  I  H  Q  L  F  M  S  E  S  S  F  K  L  I  V  S  Q  Q  L  F  F  K  I  T  F  E  T  P  L  C  F  S  G  V  R  M  K  P  N  *  A  T  E  I  V  I  L  C  E  I  P  I  L  P  G  D  M  *  H  D  I  C  K  Q  V  I  C  S  E  I  E  V  V  D  L  C  F  E  E  T  I  F  T  G  *  V  C  P  P  I  E  C  V  L  Q  V  L  R  V  I  L  *  *  I  L  S  T  Q  C  R  V  F  *  T  L  E  L  F  *  Y  I  *  *  L  L  S  V  *  C  N  R </second_frame>
            <third_frame>   Y  V  S  E  Y  N  Q  S  P  R  K  I  *  L  *  S  H  P  S  S  C  G  T  V  L  A  S  R  G  Y  S  K  *  R  N  C  M  R  K  *  F  A  L  *  C  S  F  S  S  *  L  F  V  *  R  *  F  D  V  V  G  K  R  N  L  E  G  M  G  S  T  *  I  W  S  S  E  A  I  V  S  I  S  S  K  G  L  *  T  L  L  R  S  S  Y  R  A  F  W  T  *  G  S  S  L  W  C  I  *  V  *  K  L  A  R  K  S  L  L  E  E  G  R  S  G  S  F  G  S  F  K  N  R  V  V  P  P  T  P  G  S  S  I  T  S  G  *  R  A  E  L  L  W  A  C  S  R  C  C  *  S  V  Y  *  G  W  Y  Y  C  S  F  Q  V  P  L  H  D  E  T  *  R  S  I  S  P  V  S  V  K  G  M  M  G  S  F  L  L  L  L  M  Q  F  K  K  T  T  A  R  W  V  *  I  G  *  F  F  *  S  Q  T  Y  F  C  Y  S  G  N  P  K  T  W  I  *  N  E  D  W  V  G  L  C  C  A  Q  N  R  L  *  H  Q  N  I  S  *  G  Q  E  Y  L  V  D  I  H  R  R  I  T  C  V  I  L  E  Q  F  S  S  M  E  H  Y  I  L  V  D  *  P  L  *  S  V  S  G  F  F  K  I  Q  I  G  K  I  E  R  K  Y  I  D  A  E  G  R  E  N  A  A  E  S  V  L  L  M  V  R  N  T  I  S  Q  A  I  *  F  A  L  H  R  L  C  V  F  K  H  F  S  V  K  I  Y  I  N  F  L  *  A  K  A  V  L  S  *  L  S  H  N  N  C  S  S  R  *  L  L  R  L  L  S  A  L  V  E  *  G  *  S  L  T  R  L  R  K  L  S  S  C  V  R  F  L  Y  F  L  V  I  C  N  M  I  S  V  S  R  *  F  A  V  K  S  K  W  W  I  S  V  S  K  K  L  S  L  Q  V  E  C  V  L  Q  L  S  V  S  S  K  C  *  E  S  F  C  N  R  Y  Y  Q  P  S  V  V  S  F  E  L  L  S  C  F  N  T  Y  S  N  F  C  R  Y  N  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66681" stop="66115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMFQNIINHQERFDYDRIPAVVELCLQAGAIPSEEIVCGSSLPSSVPFQADSLSDDDLMLLGRETLKAWEALRSGVQRLLLVYPAKVCEHCSEVHIGPSGHKARLCGVFKFESWRGSHFWKKAEVDHLVPSKTVWYRRPQDPPLLLDDGRNYYGHAPAVVDLCTKAGIIAPSKYHCMMKLEGLSAPSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0170F02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66081" stop="65872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSSKKQPQGGSKLVNSSEAKLTFVIQATLKLGYRMKIGWGCVALKIVSDTKIFHEDRNILLISTGELLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 78 chains have been computed
$ 
$ memory statistics:
$ 69080 bytes spliced alignments in total
$ 35 spliced alignments have been stored
$ 1973 bytes was the average size of a spliced alignment
$ 15272 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1909 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 83 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:30:03
-->
