<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:26:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320372" ref_strand="+" ref_description="SGN-U320372        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional factor B3 family protein, similar to reproductive meristem gene 1 from (Brassica oleracea var. botrytis) GI:3170424, (Arabidopsis thaliana) GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain | chr4:15343333-15345167 REVERSE | Aliases: F28M20.120, F28M20_120(evalue: 1e-21, score=101) genbank/nr: gi|15236040|ref|NP_194897.1| transcriptional factor B3 family [Arabidopsis thaliana] gi|7486319|pir||T05101 hypothetical protein F28M20.120 - Arabidopsis thaliana gi|3281859|emb|CAA19754.1| putative protein [Arabidopsis thaliana] gi|7270072|emb|CAB79887.1| putative protein [Arabidopsis thaliana](evalue: 7e-20, score=101)">
      <seq>tgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgcttgtattaccagaggctggcatgatttcttttcaagcaacaagctaaaagtaggcgatgtttgcctcttccaacttgatcgctcaaaaagcgactcaaattccattgccatcgatgttcgtgttttgtaggctgcagacttttcttttatctttattcttttgatttttactagttagtgttaccttgtaaacttatttcattaggtataggttctttttaaattgacttgattggctgatcaacaacaagtagtactctagctgctgcagagtaattaggcagtgttatatgttgagaagcaaaaatgctgatgaataagttgcatcaagaaaataatcttagaggtaactcaagccagaaggagagatcgaaggtcattccaacgtctatttagtggacaatatgggaagaaagggacaaaagatgctttgaaagataatcagtcatatccagaagatgaagttgaagtgtttggtacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15038" stop="12449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14642" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="419" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="529" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="12749" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="1142" r_length="613" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U320372" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1143</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="12749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGATCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTG</genome_strand>
        <mrna_strand>TGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGGTCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGGACAAAAGATGCTTTGAAAGATAATC-AGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337101" ref_strand="+" ref_description="SGN-U337101        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transcriptional factor B3 family protein, low similarity to reproductive meristem gene 1 from (Brassica oleracea var. botrytis) GI:3170424, (Arabidopsis thaliana) GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain | chr4:15331146-15333327 FORWARD | Aliases: F28M20.160, F28M20_160(evalue: 2e-09, score=59.7) genbank/nr: gi|15236032|ref|NP_194893.1| transcriptional factor B3 family [Arabidopsis thaliana] gi|7486323|pir||T05105 hypothetical protein F28M20.160 - Arabidopsis thaliana gi|3281863|emb|CAA19758.1| putative protein [Arabidopsis thaliana] gi|7270068|emb|CAB79883.1| putative protein [Arabidopsis thaliana](evalue: 2e-07, score=59.7)">
      <seq>aatcgattgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttgtaagatactactgccatttctttctatttcttcataattttttttttttttgggtggtatcagttttctatatgaacggaagagaaacttccagaatttctggtgtttttgatagtatattccaatttttgttcaattcacctggtattgcagacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15045" stop="13900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14745" g_stop="14200" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U337101" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14745" e_stop="14200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAA-TTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAA</genome_strand>
        <mrna_strand>AATCGATTGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323245" ref_strand="+" ref_description="SGN-U323245        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting protein 45, putative / VPS45p, putative, identical to vacuolar protein sorting homolog VPS45p (Arabidopsis thaliana) gi:2921406:gb:AAC39472 | chr1:28988919-28992877 FORWARD | Aliases: T14N5.2, T14N5_2(evalue: 1e-98, score=356) genbank/nr: gi|18411376|ref|NP_565150.1| vacuolar protein sorting homolog [Arabidopsis thaliana] gi|28201912|sp|O49048|VP45_ARATH Vacuolar protein-sorting protein 45 homolog (AtVPS45) gi|7447776|pir||T00445 vacuolar protein-sorting protein VPS45 - Arabidopsis thaliana gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana](evalue: 8e-97, score=356)">
      <seq>gtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgaaaatatagaatcacagtctaaatggggatacttggattctgcagaagtacataacgagctgagtttgctgatcaaaattcccataaatacattgtgtagccactgtaatcatcgtctttcatagcttccgcgttctgcccaagtgagacggttttgagaccacctcatctgtgtgccacttttcatgtctagatttgttgtgtacatgtagtgttctcatattcctaagatacttctcttgacttgtagtcttgtagcatatctgttctcatgtcccgactgttatttggaatcacataaagcctacatatggtacggtacatcttacagtagtttctgtgaaggtagttatttaatgttatgtttatttgtcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24628" stop="15998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24328" g_stop="24306" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="179" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="287" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="409" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="541" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="652" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16659" g_stop="16298" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="1014" r_length="362" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U323245" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1014</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24328" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16659" e_stop="16298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTT</genome_strand>
        <mrna_strand>GTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG.........................................................................................TCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATCAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCCTACATATGGTACGGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323244" ref_strand="+" ref_description="SGN-U323244        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting protein 45, putative / VPS45p, putative, identical to vacuolar protein sorting homolog VPS45p (Arabidopsis thaliana) gi:2921406:gb:AAC39472 | chr1:28988919-28992877 FORWARD | Aliases: T14N5.2, T14N5_2(evalue: 3e-125, score=444) genbank/nr: gi|18411376|ref|NP_565150.1| vacuolar protein sorting homolog [Arabidopsis thaliana] gi|28201912|sp|O49048|VP45_ARATH Vacuolar protein-sorting protein 45 homolog (AtVPS45) gi|7447776|pir||T00445 vacuolar protein-sorting protein VPS45 - Arabidopsis thaliana gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana](evalue: 2e-123, score=444)">
      <seq>aaatttgtagacaactacccagaataccgaaaaatgcaagggaatgtttctaagcacgtgacactggttacggaaatgagcaaaatagttgaagagcgaaaactgatgttggtttcacagacggaacaagagttggcttgcaatggtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgaaaatatagaatcacagaagtacataacgagctgagtttgctgatcaaaatcccataaatacattgtgtagccactggtatcatcgtctttcatagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24773" stop="16248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24473" g_stop="24306" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="324" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="432" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="554" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="686" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="797" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16748" i_stop="16632" i_length="117">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16631" g_stop="16548" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="880" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U323244" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24473" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16631" e_stop="16548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTC</genome_strand>
        <mrna_strand>AAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG.....................................................................................................................AAGTACATAACGAGCTGAGTTTGCTGATCAAAA-TCCCATAAATACATTGTGTAGCCACTGGTATCATCGTCTTTCATAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337805" ref_strand="+" ref_description="SGN-U337805        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting protein 45, putative / VPS45p, putative, identical to vacuolar protein sorting homolog VPS45p (Arabidopsis thaliana) gi:2921406:gb:AAC39472 | chr1:28988919-28992877 FORWARD | Aliases: T14N5.2, T14N5_2(evalue: 2e-36, score=149) genbank/nr: gi|18411376|ref|NP_565150.1| vacuolar protein sorting homolog [Arabidopsis thaliana] gi|28201912|sp|O49048|VP45_ARATH Vacuolar protein-sorting protein 45 homolog (AtVPS45) gi|7447776|pir||T00445 vacuolar protein-sorting protein VPS45 - Arabidopsis thaliana gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana](evalue: 2e-34, score=149)">
      <seq>cccagcatcaaccacttctattccaatctatggagaacatcaccaggggtcgactgatagatgtggactacccttatgtaagaaatcactttcagctagcatggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggatgctctacagaactttccaaactctggagattggtttatacttggaggttcttcccttttaaattctaaaagattcttgaaggaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="20674" stop="16542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20374" g_stop="20272" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="235" r_length="132" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16859" g_stop="16842" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="253" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U337805" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20374" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGA</genome_strand>
        <mrna_strand>CCCAGCATCAACCACTTCTATTCCAATCTATGGAGAACATCACCAGGGGTCGACTGATAGATGTGGACTACCCTTATGTAAGAAATCACTTTCAGCTAGCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGATGCTCTACAGAACTTTCCAAACTCTGGAGATTGGTTTATACTTGGAGGTTCTTCCCTTTTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341108" ref_strand="+" ref_description="SGN-U341108        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | vacuolar protein sorting protein 45, putative / VPS45p, putative, identical to vacuolar protein sorting homolog VPS45p (Arabidopsis thaliana) gi:2921406:gb:AAC39472 | chr1:28988919-28992877 FORWARD | Aliases: T14N5.2, T14N5_2(evalue: 9e-11, score=64.7) genbank/nr: gi|18411376|ref|NP_565150.1| vacuolar protein sorting homolog [Arabidopsis thaliana] gi|28201912|sp|O49048|VP45_ARATH Vacuolar protein-sorting protein 45 homolog (AtVPS45) gi|7447776|pir||T00445 vacuolar protein-sorting protein VPS45 - Arabidopsis thaliana gi|3540194|gb|AAC34344.1| AtVPS45p [Arabidopsis thaliana] gi|15215684|gb|AAK91388.1| At1g77140/T14N5_2 [Arabidopsis thaliana] gi|20855922|gb|AAM26638.1| At1g77140/T14N5_2 [Arabidopsis thaliana](evalue: 7e-09, score=64.7)">
      <seq>cctccaaagattagctgagatctgaaacaattttttccactgaattcaccagatcaatttctctgcatatttttggatttgtattgctgaaatcatacaaggagtttaaaaaaaaatggtacttgtagcagcggtgagggactatatcaatcgcatattgcaagacatttctgggatgaaagtcctcattcttgattcttctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatggctaaatttgtagacaactacccagaataccgaaaaatgcaagggaatgtttctaaacacgtgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="32398" stop="24110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32098" g_stop="31894" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26577" g_stop="26497" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="286" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26496" i_stop="24485" i_length="2012">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24484" g_stop="24410" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="359" r_length="73" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U341108" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32098" e_stop="31894"/>
          <exon e_start="26577" e_stop="26497"/>
          <exon e_start="24484" e_stop="24410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACGGTTTGTTCTTTTCTTTCCAATTTAAAGAAACCCTTTTGTCTGCTTCTTTGTTTGTGCATATGTGGTTTGTAAATTATTAATTTTTGTGATGATAGTGAATGTTACATTGAGGTTGATGAGGGTTGTTGTCTGATCTGATAATGGGTAAGTGTGGGGGGATAATTCAAGTTCAGTGCAATATAACTTCTTAAATGTCGTCTTTTTGAGTGATAAATCCTGTGATCTGATGCTTTTTTTGTTTGAGTTAATATGTAATTACCAATCAACAACAACAATATAGTCAGTGAAATTCCAGTAAGTGGGGTTTGGGGAAGGTAGAGCGTATGCAGACAACTAGCTTGAGGAGGTAGAAAGGCAGTTTTTGAAAGACCTCGGCTCAAGTGCATCAAAACCAACATGTAGTTACCAAAGAAAGAAAAAAAGAACTCTTGAGCTTCAATCAGTTTATCAAACAGTCAACTACTTTTATATTAGTTGGGTTAGCTAAGTGAATCATTTGTACCCATTCTGTATCTATTGAGCTTTGTTTCATTTTGTACTAAACATTGTCTTTTAAGACAACTTAGGAGTTTTTTAAAGACCAGAATTCTCTGAATAGCATCCTTATAAAGATATATAGGTCTAACCAAGAATTGTTAGCAATGTGGTCAATGAAACACTAAAGGAAAATGGAAGTGCTCATTGCTGAGGCTACATTAACAATTTGATCATTGAGGATATGGGGTAGATTTGAGATACAGACTAGTATTAATAAATTCCTAACTCATCAGATATTTGCTTAATACATCTGAAAAAGGAGAAGAAAGCATAGAAGGTGTTATCATTGGTTGTGTTAGTGATGGATCCTCGCCCCAGAGATCTTATGAAGACTCTGGTGGTGCATGTGTGTGATAGGGCCCCACATAAGCGCCAAAGTCATAGAGATGTCATGGAAGTGATAAGCAAAGATGCGAAACCCTTTCTTGTTGGTGAAGTTATGAGGTTGGATGAGGTGACTAGACTCTAGGTGATGTTCACACCTTACCGTGCTAGTTTGTGTTTGACGCACTGTTGTTTATAAATTTGATATCGGAGCAGCCATTATACTTTCAAAGAGATATAAGCTGCTGTTTATGAATTCTGAAGATAAAGGATCAAAATGTTGTTTCTTGCTGGAGTAGATTCAGGCATGATTTGGAACTTGGAAGATCTGAATGATGCCTAAGGCATCATGAGACTCTATATAGCTGGAAGACATATCAGGAGCTTATCAAAGCAGTCACAGTTTGCATTTTGGGAAGGGTGGATGGAGAAATGATAGATGTTTTATATGAAGAATGAATGAAGAAGAGAAACCTTTTAGTGTTTGAAGTCCGAATGCTTATCGTTTTTGGTTTTAGGTGTAATCTAGTTGTAAAATGATATATATATATTGTAATGATTTTGTTATTTCCATACATAGGTTGGGGTGAGTAGATGTTTGTACTTTCTACAGATTAAGCTCCCATTTGGTGTTACTTACTTATGCGCTTGAGTGGAGCATTGTTTTGTTTTTAGTGACATGACATGATTGAAATGTCACTGCACAACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTAGAGTTTGGAACCCCTTGCCAGCGAAAGCAAAGGGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTGCCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCTGTGCGCACCCAAAAGGGTAGCAGTTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAATGTCACTGCACAACTAGTACGATTTAGAAGTTTTATGATTCACTAGTCGTGAATGCTCTCTACAACAACAAACCAAATATGAGGCATCATACCCTAGGCAAATCCTGAATCAGGCAAAGATGGGAAATGTACTGCGTATGTAAGGAAATAAGCATTAGACTCTACTGATGCACTTTGAAGCCGTGTGGTTTAGATCCAAAGTGGACAATATCACCAGTGGGCTGGGCTAGTTGCCTAATAGATGAAAACCCTGTAACTCCTTTCCAATTGGATTTCTTCTCAGTTCAATATCTTTGTCTCCAATGTGTTGCCTACCATGTTGGCTTCTTTTCTAGCAAAAGCTGCCTGTTCTGGAAGATTTTATGCAACCAACTTATTAATGGCCTTAGTCTGTAGGAAGATGAATAGAATATGCTTTATTATATATGTTATGGAGACTAAACGAAGAAAAAAGAGGAGACTTAGAAGGATATGATAAACGCTAATATGAACAAGTGAACTTCTGGAAGCCTTACGCCTGTGGCAGCCGCTTACAAGAATACAATTTGGAAAAAGTATTTGTTATCTTTGGGAATTCAACTGTGTATGTAGTTGAAAATTGGAAATAGTAAGAGAACAAAAAACTGGTCTGATCATCTTGGGAGATGCCAAATCAAAATTCATTTCCTATTTTATGTATTGCATGGTAACAGATTGTTATAAAGATTTACTCTTCTAGAAGAATTTTTAATGATCAGGAGGTGGATGAAGCTTGTGAAACATTGAATTTATTAAGGCCAATTAAACAGGATGAGAACAACAAACATAGGTAAATTTTGGTTGGCGGGTAATCATGGTGTATTTTTACCTTACCTTCTTAGGAAAATAAGTAATAGTGGTGCATTCTCTGTGCAAGTTGCTACAAAATCTAGCTGAAAATTGGAAAGTTGAGTGGCCATGGGAAGTGATTTGGAAAACAAAAGCTCTTCCAAAGAGGCTTGTTTTTGGTTGTTTGGCTACAAATAATGCTTGCCTAACGTTGGACACTTCACAAAGAAGTGGAATTTCATCCTGTAGCAAATGTAATGTTTTGTTTGTGAAATAGCAGGGGAAACCACTGATTCTTCTACTGCATTTTAACTAAACCCGACAATTTTGGACATCATTTCTGTATATTTTTTGGGTGTAGTACGTTATGCCCTAGGATGTCAAGAATCTAATGTCAAGCTGGCAGGAATAGAGCATTGGGAACAATCTCAAACGAATTTGTTGGACTTCCCCATAATGTATCGCGTGGAATATTTGGCTGGAAAGAGATGAGAGATGTTCCGAAGAAAAGAATCTACATTTATCTCTAGTTGAATCTGAATGTATTCATAGTTTGTGCCTCCGGTGCACCAACACCAGATGCAGAAACTGGAACCAGAGGTGGACCCACATGGAAGGGTGATGGGTCATAGAACCCTGTTAACTTCGGAAAAGATCTTGTATATGTGTTATACCTTGATAAATGATCATATATCTTGTTAGGTACCAAGAGACACAAATGTTGATCAGGTGCACTGGTCCAACTAGTTGCTTAGTCCCTCTGCGCAAGTGTGATCACCAGTGTTCGTTGCATTCTTCTTGTCATTCTTTTTTTTTTAATTTTTTTTTTAAAAAGCATATAAAATGCGTACGCAGCGAGTTTCAAAGAGGAGTTTAATATGTAAAGTGGATTCACATCCATCAAACCGCAGGATGAGCCACTGTTTTTCCCGTTTGATATTTATCAATCCAACTACATCAGGTTTTTTTGTGCGAAATGAAATTTTCGATGAAGGGTGTCGCATGACACTGCTTCCACTAATGTGCATCCGCCTCTGGTGGTGCCGCCGTCATGTTCAAATCCTGGGTCCGCATGATCATCTTTTTGGTTTTTGAACTCCACGATGGCAAAGATATAATGAAGTCATTGTGATTGTCTTTTTCTGTACACTTCTGCAATATTTTCTTGGTACTATCTTAAATAAAATCATTTTTACATTATACCTAAAAAAGAGTATGTGTGTTGCATGTGCAACAACTTTCTTGGTGGAAGTTAGTTCTCTACTGTAAGGGTGTATTAGGTTTGGATTCTGGATTCTGTAGGATGGTTTGCTTTAAAATACAAGCTCTTTCCTCTTCTAATTAGATTATCAATTGGATACATCAGTTTGGTGTGGGATGGTTTTATGGAGGATAGTCTTCTTTGACATTTAAGCCTTTCTTTTTTGAAAACTCAATTCAGCCTTTTCTTTTTCTACCTATATGTACACACTTTTTATAGATAGGTATAGTGTCAACCTTATTGAAAATACCTGCATAAAGTGAATGCCAGGAAAGATTACGACCAAAAGGATGAGCCATTGCAAGTTATTTCATGCACTTAGAAGTCAACAATGGTCAAGCTGTCATTTACATCTTAAAGGGCCATGTTGCACCAAAGCCTAAGCAAAATGTACAATTGCACCAAGAATATAATCTTCTTTTCCTTGAAAAATCTGTGGTTGCAGTAAAATTGTGCACCAGAAAGAATAGGAGCACCACTTATACCTAGAATGTTGAAGACCATATCTCTAAACTGAGAATTATACTTGCGGTGAAGAACGAAGTGGTTAATGTTCTCTTCCTTTTCTTGCAAAGACAACATCTGTTGCTCAGCAGAACCGCTTTTCTGTTAATTGTTAGAAGGAAGATAAGCCTCTTTAATATCAACCAAATGATATTTCACTTTGTATGAAGCTTTACTCAACCAAATGGTTTTCCAGGGCCACAGAGGAATAGGTGCTGGTTTTTCCAACCGAGTGTAGCAGCTTCTAACGATGAAGGCATCTATAAAGGTAAAATTTTTCTCTTGGATTGGTCCTACAGTGTATTAGACCCATTTTTCACATGCATTAAATAGTGACATAGTGTATGTAGACAATGGGTCTATACACTGTTAGAACCCATCTTCCGTCCAAGAGAAAGATTTTACTTTTTTCCAATTCGATGGTTTCTCTTCACACCCTTTTTTGTAGTATTTCATCCCAAATAGAAATAGAATTTGCTTTAGCCCCAAGAGGAAGTCCAAAAATATATGGTTGGCAAATAATCAATGTTACATCCCAAAGTTTCTTCTAGATGGTTAATATTCTGAATCACTTTCTCAGGAAAACGACTATTTTTGGAGTAGTTGATTGCTTATTTCTACATTCTTTTGGTAGTTAAGTTGGTAAAATATGGCCATAAATGATGTAATTCTGTTTAACAATCTAGTAGAAGCTTTACCAGAATAATAATTAATTTTGTTGGATTCTCATGATGTTAAGTGCAAGTTTAGTTTTAGTTGGTTATATCTGCAAAATGTCTTCCCGTGTTAATGTTATCCATTCATAAATGTGTTGCCAAATCAGGTGTAGAACTTAATAAACCTGAGGTCAATTATGTTATTGTTGAGTCTCATATCTCATCAATTCTGAGAAGTGCAATACAGAGTGGTGTTTACTTTTCACTCTTGATGAGCAGGTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATCGTTGATGGAATGTCTGCAGTTTTCTTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCTGTAAGCACGTCAGCTGTTTCTTTCTTTTCCCTCAACTTCAATTTTTCGTTCTTTGTAGCCTAACAAGTTCTATTATTAGGTTTATTTCATTTCCCCTGCTTAGGGTCGAAGGTATAGTTGGTTTTGGATATTTGAGATTGGAAAAGGAAAAAGTTGAACATGTGTTTCATTCATATTGCAGAAGCTGATGTACCAGCAGGAGAGTGGCCTTTTTGATTTCAGAAGAACAGAAGTGTCTCCGTTGTTGCTAATAATTGATAGGCGGGATGACCCCGTGACTGCACTTCTTAATCAGTGGACCTATCAGGTATGGGTAGTCAGTAAGTTCTCCACGTTTGTCATTTCTAACAAATTGTGCCTCCCCCTCTTCTTCTTCTTCAAGTCACCTCGGAGTGTCACATAATGCTTCTTGTTTGTTTATGTACTTCTACAGGCAATGGTTCATGAGTTGATTGGTATTCAAGATAATAAGGTCAACCTGAAAAACGTTGGCAAGTTGCCAAAAGATCAACAGGTCAAAAAGCTCTTTCTTCTTGTATCTAAATACTACCTTGTTGTCTTTTCAACAGTAATTCATTTGCTGTTGATTTTTATGCTTTCAGGAGGTTGTACTGTCATCTGAGCAAGATGCATTTTTCAAAGCAAATATGTATGAGAACTTCGGAGATATTGGAATGAATATTAAGAAAATGGTGGACGACTTCCAACAAGTGGCAAAAAGTAACCAGAATATCCAGACGATAGGTTTGTATTGTAGCTTGGGTTGTACAGCAAGTGTTTCTGTTGCAATTCACTCAAACATGGTATTTTTCTACTAAAAAGGAAGCTTCTGTTTATAATGTCTGCATCTTTGCAGAGGACATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACAC</genome_strand>
        <mrna_strand>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAGTTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................--GCCATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAACACGTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320550" ref_strand="+" ref_description="SGN-U320550        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:10354240-10356905 REVERSE | Aliases: T28I24.6, T28I24_6(evalue: 3e-103, score=372) genbank/nr: putative(evalue: 3e-110, score=402)">
      <seq>ttcatttcaatcccaactatttattcttaccttcttctcagggccttccgatctactgtttcacctctgtttttgaattccaatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccagaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgagggcattgcgagttttaccaatgtttctgttgcctggcttatccttcattacatattcagcgattggaagttttacaaggatgtgtgaacgtaaggaccagaaaactctagaaaaactacgagctgaaaggcaagccaagattgaggaactgaaagagaagacaaattactatataacgcaacagctcattcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacggtgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgggttagccaggaaagaggacttcccatacataacctactattgccctcattgccatgccctaaataggcctaagcagcttgatgatcgtgtctctggtacaagtacccctaaccttggttccacaacttctttggctgatgttgattcggtcaaacaagttagtggatctactccggataaaatacccgcatcagcaagtggcagtcctgtagcagctccagtggaaacagaaggtgataacatagtgtccagtgcttctaacagctagtagatggggagttttgaatagagtcgtgcaggcgagtgctttttctccctatatatgtgtagcggggttttatttttttcttttttcttggtaatgtgtaactctctgttgtatacatagtagaaaacatattcaacgattcatacggtagcttccttgaaacttttctacagacgcaatatacctcaattttcttttgtttgagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctggggggggggccgggacccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42371" stop="33877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42071" g_stop="41929" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="420" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39130" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="565" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35530" g_stop="35421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="675" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35171" g_stop="34754" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="1093" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34655" g_stop="34180" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1569" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1583" polyA_stop="1603"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U320550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1571</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42071" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39130"/>
          <exon e_start="35530" e_stop="35421"/>
          <exon e_start="35171" e_stop="34754"/>
          <exon e_start="34655" e_stop="34180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGTGTAAGTAATTAATGGTTGTTAGCTAACCGAAGTTCACATACTACTCATTTCATTGGGATGTCTTACATACTCATTTACCCCTTTTCCTTACTGTCTCTGCCTTTTGATGCTGAATGTGAAATAGAACTTCGATTTTTATGGCAAAATGATAATTGCCTGAGAGATGACCAGCTTTTCTGGGGTTGTTTTAACTTGGTTAAATAAATGTGGTATACATGATAGAGCCAGTGTCGCTCAAGTAACAAATTAAGCATGGATGATTAATTCCCTGTTGCTAACATGTAATGCCTTGATTAAGTAACATAATTTGGTGGAGGGTGGGGTGTATGTAACATAAGTAGCGTGTGAGAACAAAAAAAGTAAGTCCAAGTCAGTATATCTTTTTCATTTACAACAACAACATACCAGTGTGGTCCAACCAGTGGGGTTTGGGGAGGGTGGGGTGTATGTAAACCTTACTCCTACTTATGTGGGGTTAGAGGTTGTTTTCAATAGACTTTCGGCTCGTTTGAAAAAGATGCAAGACTAAATAACTATGGTGGATGATTGAAGAAAGAGAAGTACTACAACAACATACCTAGTATGATCCCACAAGTAGGGTTCTGGGGAAGAAAGAAAAATACTAACAACAGAATAGTAAAAATAAGCAAAGTAATAACAATAGTAATCAAATTGGAGAAACAAGATAATGCTAACATAATAATGAAAATAATACCGGGTAAGAGAGCTGATTGCTTCTATCCAATTACTAAAATGGGACAAGGAAGTCAGCAGACATCAGTCTCTAGTGATGAACCAGGATATCTTTAAGAGTGGTAGTCACATCTTCCAACATCTGACAGGTAATTCCATTATACCTGCAAAAGTTCAGATTGCTCAAATAAAGCAAGACTATCACTTGATGAAAAGGGAGGAAGATCATGTATTAAACTGCAAACTGGCCAAGTCCTTTCAAGTTAAAGACTCCCGGACAGAGTTCTTCTGGATGTGTTTCCTCCCATAAGAAAGAAAAGATTACTAAGAATTTCCTTTTATATTTTCCTTTTCTTACATTTTCTTTCTTTTATTCTTTATTTTCTTTTTCTTCCTTTCCCATGCTACTACCTTCTCCACCAGTACCACCACCTTCCCTATTAATGCTAATCTTCCGTTACCCTTTGGGTTAGCACAATTTTAAACCCCCGCTCCTGTGCAATAGCTAGCAAACCACATAGGAGAGGGTACCAACATTAGGCAAGTCCGATGCGACGAGCTTGACCCAGATGGCAAACCCCTTTCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCAAAGGGTATTTTAAACCCTATTTATGTTCAAAACTAAACCAATGAAGCAACCATTTTTAGTTTGGGAACGGAGGAGAGGAACTGACTGGTGACCTCCATGGAATGGAGGAAAGAAATTGCTGGTTAATCGTCAGATTTCATTCTAGTATGTCAGGTTATTTTTCGATGGGAGTTCAGGTTAATTATTGTATTTGCTGGCTTGGAAGTTTTCTAGTAAAACAAGTTGTAAAAGTGTTGTTCATCCAATTTTGTTCAAGTTTTTCGTCCTTATTGCTTGTGACTCACTGTACAACTGAGCTTTGAGATTATTTTTTCTTTTCTAGGTAGAGTATCAAAGATTTTGTTGGTTCTACTCCCAAGTATGTTTATTTCGCTAAACCAATTATGTAAATGATTGTTTCTGTTTTCTACACATGCTACTGATGGGTATTTCAGTGGTGAAGTGGTGGTTTGGGTGGTAAACGGTTGGAGGAAGAAAATGTTGGAAAGAAAGAAAGAACTGCAAGAAGACAGATAGAAGGGCATAAGGTGAATAACGAGTCACAGAGAGAGGCAGCTAACAGCGGAAGAAAGAGAGAGGTTGCTGACAGCAGAAGTAAGAGAGGGAAAAAATATAAACTAATAGACATAAATAAGAGGAAAAATGGAAATAGAAGGTTATGAAGTTGGCATGTGAAAACAAGGATTTGCATGAAAAGCACTTGCGTTCTTAATACTGGGATTGACCCAAAAATAGGGTAATATACAAAATCTAGTGTCTTTTTGGACATCAGGGATTATCTTAGGAAAGCTGTGTGTATTTTTCCAAAAAAAAAAAGGTGAGAGGGAAGGAGAACCAAGCAAACAATAGACAAGAAGGAAAATAAAGGAAAAGGGGATGAAAATTGAAAACAACAAGGCAGAAGCTAGAGTACATTTTTCAGAGCTGCCGTCGGGTTTGACTTAATGGCTGATCTTTTTAAAAAAGTATAAAGTGGTCTAAGGTTAGTGCGAACCAAGAAAATACACTGATTGAATCAACTTTAGAGCCAGTGTATTTTCTTATTTGGGCCACAAATCAATTTATTTTTGCAAGAAACAAGGTTTATCTTTAGTTATAAACAAAGCAAAGAAAAATTCAATAAATTGGACTAACCTTGACCACTTAACACAATTTAAAAGAGACAAGTTTATATTGAGAACACTTGAAGTAATTAAATAGATTGATACTAGCCACATTGTTAACCAGCAAAAAATATATAACTAATTCTAAGTAGGTATATGTATTTACATTCATTTGCAGCACACCTTCTTTCATCCATATTCTTTTTCTCCAAAACATATTGATATCTCCAAATCAGAAAATTTAAGAGACGACGAATCCAACCTCTACAACCATAGGCCATTGAATACTTGCACCTGTGTCCGTGGATCCATGCAATATAGGTTTCATGAATTCATTCGCTGTGATCCTTGTAGAATGCATGCTGTCATTTCCCTTTTTGCTTAAGCTTGTGTGGTATTGGATATTGCAGTTGTGTGCAAACCCTTCTTTCTAGCCTACAGAAATTTCTTTTGGACATTTTCTTTTGGGGGTGTGGGGTGTGGGGTTTGGGGTTGGGGGGGGGGGTATGGACTACTATAGTTGAAGCAGACATTGTTGTGTGGGAAATTATGATGATGAAAAGGAACCATGAAGATACTGAATTGATTGGTAACTGGACTGTAGCAGAAAGTTAGTGGCTGTAGAAGCAGAGGAAACTCTGCTTTTTAAAGTTACTTACAACCTAAAGAAAAACTTATGTAAAATTCAGATGAAAACCTGATTATTTTGATGAAGCTATAATGGCATATCAGAGCTCATAGATTTGATTTTGCACGTATTCAAATGGTTGAGAGTATATTTGATTTTTCTTTCTGATTAATGTTAGGCTCTCAAACAACATGAAATTGTCCATGACCTGTATTTTAAGGTCACCTTGTATGATGTTATTGAAAGATACAACTTACCAATCCCACAAGTGGGAAAAGGGCAGTCTGGTGCACAAAGCATCCAGTGTTTGCTGAGATGTTTTTGAAAATAGTATGCAAAAATTTATATCTTACTTCATTCCAGGGAAGTTTCCTTTTGGCTTTTAAAGATCTTCCTATTTGTCTATTCAGCCTCGTGGCTTTCACTGTATTTGACAGGTTGTCCTTGGTCATGATGGCCTTAGAAGAATAGTGTTTCTTGACTCACTTATACGTTATCCTTTATGTGTTCGTGCAGGTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAA</genome_strand>
        <mrna_strand>TTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337146" ref_strand="+" ref_description="SGN-U337146        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:15122235-15123492 FORWARD | Aliases: F6E21.10, F6E21_10(evalue: 9e-54, score=207) genbank/nr: putative(evalue: 2e-52, score=209)">
      <seq>actatataacgcaacagctcattcaggtgatagcccatatgcaaggttttgggcttatacaagtttcacatgttattaaccatgagtactgtgatcaaataatctttcttgtgttaagaaataagaaggaaaaaaagaaccatgaaattgcactctgagagacttatttagtattacatttctcactgttttgtccttgcctctatcgtcgtgaatttccaaaaaaaccttttttttaacaatttccaagcatcattgttgaatcttttgtgcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacggtgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgggttagccaggaaagaggacttcccatacataacctactattgccctcattgccatgccctaaataggcctaagcagcttgatgatcgtgtctctggtacaagtacccctaaccttggttccacaacttctttggctgatgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="35746" stop="34209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35446" g_stop="34754" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34509" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="840" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U337146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35446" e_stop="34754"/>
          <exon e_start="34655" e_stop="34509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</genome_strand>
        <mrna_strand>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323420" ref_strand="+" ref_description="SGN-U323420        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: unknown(evalue: 5e-11, score=72)">
      <seq>caatttttgagtgttttttgctactttgtatttgtttttgatctgtttcactgactcaaatcaaatcttgattctttggcattatctcacaacttcccatctacccccagagaatcagctgaatcaagaactgatttttagattatgttctcttgattctttgaaatgggaacttgattttcagttttccaattcagatgtttgtcttcttaagctggaaaacttgaaaaaggaaaccccagaatggatgaagtttagctggtggaccacttagtcctattgaacctagacagaggatttctgtattcacgtatccaaatatgcttcatgaaagaacataaatattgctgatattttctatcaagggccactatgggtgaaaatgcaaaaaagcgaaagtctttgtgggatgctgaagaagagagtccaccgaaatatgaggagtggggacctccaaaacctgaaaattcatggcagtccaaaagtagatcaggttggtcgtctggggacaatgttacaggaactgacgatttgaggaaggataactatcgattcaagagcatgtctccagcttttgaaaggcgggaaaggcgaagcaatagccactctccagataatggtcgggcccagtctcacagatacgttggcagagccaggagcaggggacggggaaggggagaaggtaggagcaggagtcgcagcaggggacgggacaaatttaggaccaggagcagaagcaggagccgggacaggggtagtatgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatatatcttcccaggtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttggaggatgagctgaacagaaatcggagtagaggtacaattacttgcaggaattttgtgaaaagcaactgtcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgattactatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="48848" stop="65027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49148" g_stop="49458" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49459" i_stop="63415" i_length="13957">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63416" g_stop="63743" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="638" r_length="328" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63744" i_stop="64166" i_length="423">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64167" g_stop="64727" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="1198" r_length="560" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U323420" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1200</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49148" e_stop="49458"/>
          <exon e_start="63416" e_stop="63743"/>
          <exon e_start="64167" e_stop="64727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTGAGTGTTTTTTCCTACTTTGTATTTGTTTTTGATCTGTTTCACGGACTCAAACCAAATCTTGATTCTTTGGCATTTTCTCACAACTTCCCGTCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCGAATGTTTGTCTTCCTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGAGGAAGTTTAGCTGGTGTACCACCTAGTCCTATTGAACGTAGACAGAGGCTTTCTGTATTCACGTAAGTATCTAGCTAGGTCTCTACTTGTTGAATTTCCATTGATTTTGATTGAAGTTACTCTGCTGATTTGCTTACTTTTTGTCTTCGTTTACGTATCTGGGTGTGCTTATTTTGCTGTTTGAGCATTTGGGTCAAGATGGGTTTTTGGTTTTAGATTTGGGGAATGGAGTTGAGTACTGAAATTCCAGTGGAATCAAGTTCGTTTTTTTTTTGCTTACTTTCATTTACTTCTGAGCATAATTTGGGGGAAATCATAAGGGCGGGTTGGGTTTGGTTGTGCTAGTTTACGGAAATTTTATTTGATAGAATTTTGCATCCAACTGTCACCCAGGTCAGAGTTTGGGGCATTGGGTATAGTATAAGCTCACTTCTTTTTGGGATGATATTGGTATGTGCTGTTAATTCTTGTGCAATAGGTAGATCTCGAAGCATTTAATATCATCGAAGTTTAATCGTAGAAATTACATAGCCTAAATGTGAAATGAAGAAGATATCTTGAAGAGACTATATGGCACTATTTTTTATCATCTCTGCTTCACCTAATTTGTGTCTGATAAGTATCTAGTCATAATAGATCACACCTTTTAGTTGTTCACACCTTTTAGTTGTTCTGACAGCAGCCTGTGATGTGAGATAGTTATGCAACTGCTTCTGTTCTGCTTTTTTTGCATGACATCTCAGCTGATTGAGTTATTTTCTTCCATGTGTAGTCTCTATTTAGTTGTCTGACTGCTAGTATTTTCTGTTTTATCATTTTCTGTATGCTTGCTGACTTTATGGAAAATTTGGGTAATGAATACCTGCTCAACTGAGAAAAATATTTAAGTTAGGAGCCTTGTTGAGAGCTTGTATTCAAGGTGAAAATATAAGATGTAGCAATCTAGAAGTGCTTACATGATGTGCGTTTTCAACTACTTTCTTTTGTTTCCTAATACCGAAATCCTATTCCTAATGAGTTTTACCTTACATTAGATGACTCCCAATCAATAATGATATGTGTTTAGATTAAGAGGAAGAGGATGTAATGGAAGGGTATCCTTTGTAATAAGTTTTTTTTCTTCCATTCTTTTTTTTCGAAACTGTAACATTTGTATTTCACAGAGTACTTAGGTAGTACTGAAAAACCATATTTACAAAAGCAGAAAGTAAGTATAATCTATCCAAAAACTGAACCAAATCTAAATGGATCCTAAAACATCTATGATTGACTCAGTTTCATTGGAGTAGACATTTGTACACCAAAAGCAGAACAACAAAATACACTTAAGCTTACTTCCTACAAGTTGTTGTTCCTATTCTCAAAACATCTCTCGTTTCTCTCCCTCCATATAGTCCACCAAATACTAGCAGGGATCGTCCACCATCTTTCTCTGTTTGTAGCCCTAACTCCAGCCATCTCCCGACCGAATAGAGTCTCATCAATTTTGCTAGGCAGACACCAAGATATGTCTCTGAGATTAAGGAAAGTCTGCTACAGTTGCCCAGTGAAGTTGCAATGTAAGAATAGATGTCTCACTGTCTCATTAGCCTTCCCACACAAGGAACATCTATTACATAGAGAGATTCCTCTCTTGGCCACATTATCCAATGTCAAGACTGCCTCCTTAGCTAGTAGCCATGTAAAGCATGCCACTTTGTGTGGCACTTTGGTCCTCTAGATTTGCTTCCAAGGCCATTTGAAGTCTTGAATGCCACCAATAATTATTTGTTTGTATCCTTCTTTCACCTTGTAACTACCTTTGTTGTGCCCCTGCCACCATAAAAAATCCTCGCCTGTTTGTATACCTTGGAAACTCTCCAGAACCTTAAACAATTCAAGTATTCTGGGAATTTCCCAGTCATTCAAATTTCTTCTGAAAATCAGATCCCAGCCTTGTTGTGTCCACATTTCACCGACAGTCTTCTGTTGGTGTTGAGCCAGTGTAAAGATGTCAGGGAAACGATCTTTGAGGCTCATACCACCCAACCATTTATCGAACCAGAAACTGGTTTTCTGCCATTTTGTACCTTGACAGTTGACTGGGTACTGGGCCAAAATATTCGGATGGATTTCCAAAGGCTAATCCATAGGGGGTATTTACCTCTTTGGTTACCCATTTATTTAGCTCCTCGTACTTGTGGTTGATCACCCTATACCATAGTGCTTGGTCCTCCTGATGATACCTCCATAACCATTTCATCTTAAGAGCTTTGCTATGGTTTTTAAGATTCTTGATACCTAATCCACCTTGCATCTTACTTATAATGATGTTCTTCCACTTGACTAAGTGAAAACCTTTTCTTTCCTTATTTCCTTGCCACAAGAAGTTTCTTCTAATTTTGTCCAACCTCTGAACTACTGACTGAGGAATATGGAAGATAGATAGTATATATGTTGGTAGAGCATCCAGAACAGAGAACAAAGTTTATCAGTGTTAATCTACCTCCCAAGGAGAGGTATTGTGATCTCCATCTGGCTAGTTTCTTTTCACATTTCTCCACTATTGGGTTCCAAATGTCTATGGCTCCAGACTTTGCCTCCAAAGGCATGCCCAAGTATACTGATGGCAGAGTACCTATCACTCCTCCCAAGGGTTGTGAGAGGTGCTCCATATTCGGAACCACATTAATTGGATACAAATGGCTTTTGTTCCAGTTTATATGTAGTCCAAATATGGCTTCAAAGTAGACTAGTATAAGTCTCAAAATCAGCAATTGCTCCTCCTCAGTCCCACAAAATATTAGTGTATCATCAGCATACTGTAGGTGTATGATCTCCATGCTATTCCCGAAACCTTACTGATTTCAGATCCTTGTATTCTTCCAGTTGTCTTGGCTATCTTCAACATATTGTTAAGCCCCTCCATAGCTATGATGAACAAGAAGGGTGATAAAGGATCCCCTTGCCTGACTCCTCTGCATGCATTGAAGAAGCCTTCGGGAGACCCATTGATGATTACTGAAAACTTAACAGTTGAAATACAAAACTTGATCCAACCGATCCATCTGCTACCAAATCCCATTTGTCTCCTCATACTTAGAATGAAATCCCAATTCACATGGTCATATGCTTTCTCAACATCAAGTTTGCATAGTATACCAGGTTTCTTCTGGGACACTCTAGAATCAATTGCTTCATTAGCAATGAGCACTGCATCCATGATGTGTCTGCCTTTGATAAAAGCCGTCTGTTTTTTGTGTACCAACTTATCCACAACTCTCTTCAACCTTCTCTATCAAAACCTTGGACATTAGCTTATAGAAGCTCCAATTAAGCTGATGGGTCTGAAGTTCTTGAGTTCCTTCGCTCCGATCTTCTTAGGAATCAATGCTATATAGGTTGCATTATAGCTCTTTTCAAACATCCCAGTTGAGTGAAAATTGTGAAAAGCCCCCATAATGTCATGCTTAATGATCTCCCAACATTTTAGAAAGAACCTCATTGTGTATCCATCAGGACTAGGGGCTTTGTCTATAGCACACTTTTTTAAACACTCAAGTACTTCTTGTTCCTTGAAATCTGCCTGTAATGCTTCATTTTCACCCTCTGTAATGGTAGGATGGTTGCTGATATTTCCAGAGGGTCTCCAATCTTCAGGTTCTATATACAATTTTTTGTAGAAAGAAATAATTTCTTCTTTGATTCTATTTGGCTCTGTTATAGTCTCTCCCTGAACTTCCAGTTGATCAATATTGTTGCATCTCTTGTGGGCATTAGCTGTTTGGTGGAAGAACTTTGTATTCCTATCCCCTTCCTTGAGCCACAAAGCCCTCGATCTCTATCTCCAGGCCACTTCCTCATTCTTCAAACACCCCTCATACTCTATGAAAAGTGTGGCTTTTTTTTCTATCTCCTCCTCAGTTAACACTCTGTTGCTCTGATGTGATTCTAACTCAACCATCTGATTGAGAAGGTTGTTCTTTTGCAATTTCAGATTACCTTGTTATTTCTGCTCCATTCTTTCAATTTCCCTTTGAGGGCTTTGAGTTTGCATGCTAAGATGTAATCTGGCTTCCTATAGAATTCGAAATCATTCCACCAAACCTTGGTTCTATCAACAAATCCTTCTTGTGTCAGCCACCAATTTTCGAACTTAAAATAGGATTTAGATTGTTCCCAATGCCCACATAGCAAGGCTATAGGAACATGATCAGAAGTCACTGTTTGCATAATAGTTTGCTTTATGTTGGAGAAAAGATTATTCCATTCTATTGAAACTATAATCCTGTCTATCCTGGATGCTGTGATATGGCTATCACCCTTGTACCAGGTATACCGTCCACCACTTAATTGCAGATCAATGAGGTTCACGTCTTCAATGCATTATGAGAACTCTGTCATTGCTGAGTTTAACCTGTTGCATTCCTTTTTTTCAGAAGAAAATCTACAGACATTAAAGTCACCACAAACAGCCCATGGACCATCCATCAAGCCTCTTACATCAGCCAGTTCTTCCTATACAACCCTCCTCTCCACTTTATTATTCGGAGCATACACTCCGGTTATATGACATTCAAAATTGCTTGTCTGAGTAAGAACATCTGCAGGCTAATCTGAGGATGGTAGATAGGCAGTGATAAGCAATCCATCTTGGATCTTTTCTTTGATGAAATGACAGTCAATGTCAAAGTGTTTTGTTCTCTCATGAAACATAGAATTGGCTGCAATTTGTAATGCTGAAGTACTATCTGAATAAACAGGTACTGGTAGGGAGATGACAACACCTAACTCCTGAAACAAACCAACAGCCCAAACAACTTCTGCAACAGTTGAGGCCATGGCTCTGTACTCAGCCTCAGTTGAGCTTCTGGAGACTGTAACCTGCTTCTTGGACTTCCATGAGACAGGAGAATCTCCATATTTGATTAAGTATCTAGTGATTGACCTTCTGCTGTTGATACATGAACCCCAATCAGCATCACAAAACACCTGCAAATTATTTCCACCAGTAGATGACATTAGAATTCCTAGACCTGGTGCTGTCTTCAAATACCTGACCAATCTGAGTGCTGCATCCATATGTGAGGCCTTTGGTGCATGCATGAACTGACTCAAACATTGAACTGCAAATGATATGTCTGGCCTAGTGGTTGTGAGATACAACAACCTCCCAATCAACCTTTGATAGCTTGTAGGGTCTTCAAGGAGTGTATCAATATGTGCAGGATTTATGTGAGAATCAAACTCTGTGGTAGTGAGTTTAGATTCAGCTCCATAGGTGTTGACACTGGTTTAGCACCTGATAGTCCCATGTCTGCTAATGACTCCAAAGTGTACTTCCTCTGATGTATGAGAATCCCAGCTTCACTTCTAGCAAACTCCAACCCAAGGAAGTAGCTTAGTTCCCTTAGGTCTTTAATCTTGAATGCATGTTGCAAGACTATCTTGGTTTCATGAATCATACTGTAATCACTTCCCCTCATCAGTAAATCATCTACATAAATCAATACAACCACCAATTTATTTTCTTCCTCTTAGTAAACAAAGAATAGTCTCTAGTGATCTGTATGAAGCCTGAATCAATCAAGGTAGTGGTGAGTTTAATGTTCCACTTTCTTGAAGCTTGTTTAAGACCATAGAGAGACTTCAACAATCTAGATGCTTGATCACTGCCTACCTTTGTATACACTTAAACTTGTATAAAATTGAACAAGTAGACACATTTGTGCTATATGACATGATACACATACAATGCCGTAAAAGACATAAATTGCCATGTAGGGTGTCATGCAGTACGAATGTGTCAATTTGTTCAATTTTATACAAGTTTAAGTGCCTACTTGTGCACACCCAAAGTTAAAGGTCATAGTTGTCAGCTGACGCCAAGTTAAATGTCATGTTTATCTATTATGCCTTTAATAATATAAATGTTGTTTATATAACAATATACTTCAATAAGGTATTCAGTATTTAAACCATATTGAATGCCAAAAAAATTTAAAATGTATATCATATACCATACCAAATATTATAATATCAAAATCACGATATCTAAAAATTTCGATATATACCATACCATGACCACTCCTACCCTTCAACAAACTAAATAGATCAAAGAAACTCTCTAATTTTGAGTGTGCAAAGACGTACGTAAATTTGGTATAGAGTTGATTAAGCATATATTTTACTTGGTGGCACACATAAATTGTCACATTATGACGTGTGTATCTAATAATTCAATTTTATACCATATAAAATAGGAGGACATATGTATGCCAATAATCTATGATAGATTTATAGATTGTGTAAGGTGAGAAAAATGACCAAAATACCCCTATAGTGACTATCATTCAGCTAATACCTCTCTTACAGACCCAGTAGTTCATGTGTAGAGAGGTTGCGAAGACTTATAGGCCATAGACGAACTCCTTCAAATAATCTTTTTCTTCTACAATTCTCTCACATTCTCTCTTTCACTCTCTACTCTTGAGGGATTTTTTTATATAGAAGATTTCAGAACAAAGGGTACTGACCTTTGACATGTTAGCAAGTGGAGGACAAATGATATTTAATTTAAGGGATCTTAATTTTAGGAAATGGGTTAAAATAGAGTGTAGTGGACATAGATATAGCGGACCCAAACTAGTTTAAGATTGATTTATGCTTGTTGTTGGTTGAATTTGTACTGTGGTTGGGACTTGGACAATTTAATTTGTTGGATAGTATTCTGGGGATTCTGCATATAGACTAGATCTGAAGCTTGATTACTGGAATGTGGGTAATTAGCTTTGTCAATTGCTCCTAATCTGTTTGCCGGAAGTGATGAACAACTGTTCTTGAGTTGTTTGCCCGAAGCATTAAATTCGTTCATTTATATGAGGAGTTCACTACTCTTCTCATATACTTCCAGATGAAGTGTGGCTAGTATTAAAAAGAAGAAGTATTGATTAAGAGCACTATTTGAAATACTCTAAGCTATAGCATGTCCTTATTGGCGGTACTGCCGTATTGGTGAGTTGTTGCTCTTGCTCAAAGGCTAGTAAAGTTACAAAAGATAGGAAAAGGGATTTGAAGTTTCTCTAAAGAGTAACTAGTGTTGTAGAGGAGGATCATGTCGGAGAATTACTGAGATCAGTCATGCAGCCTTATAGAGCAACTCTACAAAGGAGTGTAATGAAAGGGTGGGCAGGTTTGACATAGTTATCAGATTTAAGTAAATAAAGCCATAATTTTTTTTGTGTCAATAAACAAATTTTATTGATAGCAAAAATTAGCCAAGCACTAAGCTAGTGAACATTAAAAAGTGAGAGGTCCTCCTATACCAAAAAAAGATAGCCTTTTATTTGGAAATAAAGCCAGAAATTGTGAACTTCTGAAAATGGTGCAACTATATTCTTTTTTTTTGTAACACTTGTCTCTTTGTCATCAAATGTCTTGCCTACGAACAGTAGTACTTAGTCTTGTATGCCAGCAACATAGAGATTAAAATTTATTTGGACCTGAATTTCGAAAGGAATTTGCAGTGCTAGGTGATGGAAGAGCTCAACAAGGTGATCTAATCATTCTACAAGCAAAAAAATATCAATTATCGATAATAACAGCCCAAATGAGAAGTCCGGGAGATGATATTTTCTCAATCTAAGTCTTTCTATAACATATTACTTGAAAGAGAACGAACACTTCCCTTACACTTCAGTTGGGTTACCAGAGCTTCAAGAAATTCACCTTTCTTAACTTGATGAACTGCACGGAAAGTCATCTTTACTTCATCAATAAAAGATCTGCATGGAAAGCCATCCACACAGAAGAATGGAGGAGTAAAATTTATAAAAATTGGTGTTTCATATGTAGGACTGCAATAGAGAATGTTAATAATTGTTGCTTCATGGTTCGACACAAACATGTTATGGTGCATGGTGTGGAAGGTGTTTGAAATTGAATTTATGACATCAACAATAGTTAGAGAGACTACTAGGGTGGATATTTAGAAGGACGAGGCTGAAAATGAGATTGTTGAAGTTAGCTCCTTGTTTCATGTATCTTGGATAATATAAACACGAACAAACAGAAGAGAATTTGAAGGAACTGAAAGACCCTTGTAAATGGTTTTGGGTGGGTATTTATTGGTGTATTGGCAAGTTCAGTTCCCTCATGGAATTTGATGAAAGACTTCCAATATAATTTGTGTTTGTTAAAGTTCACTGGTATTATTGTTAATCATCCTTAATTAGGCAAGGCTTGAATGATATTATCGGTCATTTGCGCTTCACTGATGCACATTTGGATGGTTATATCGGTTCTGCTTCTTTTGACGTGATGACATGGTTGTTCACCATCAGAAGTAGCAGTAGCAGACTAGCTGTAGCATGCTGTATAAAGTCAAAGCTAGTAGAAGTTGGAGAGTCGGGATAACAAAAGAGGCAGAAGAGAAGAAAAGGAATATAAAAAGAAGAGGCCATTATTCAACACCAAAGTATTAGTCAAAAGAAATTTGGGTACGACTTTATTACCAAGAATAACTTGGGGATGTTTTTACTATATGCGTCGGAGATTGTTGAATGTGAAACTAATAGACCCGTCATGACTTTTATTTTTGAGAATTAAAAAGGAAGACCTGTCATGACTTGATTCATCAAGTGCAATAATTGACATAAATAAAGTTTATATTTAGCTGCTACTGAAAAGCCAAATGAGCCCATTAATTATAGAAGTATATATCCACTGGATGATTTAAGGTTCAATAGAAGTTCTTTGGTCAAATTGTCTTCAGAGATGAGTGCTGGAATCACATCTTATATTTAGGCTCGCAAAATGGTTGCATCTTCTATGGACGTGCATTAGCTGGCAACATCAGATATACATTTTAAGTGATGGCCTTAGGATGCAACATAACCTCTCACCAGTGTTCTATTCAGCTGCAACTGGTATTCTAGCCATTAAGTTGTCTTGTTGCCCTAAATAGCAGTCATAGGACTACTCTTGTAGTTTCTCGCTCTTCAATTTCTGTGACTATTTTCTATGTTGTGTAGTTTGTTTGTAGTATTATTTTGTTATAGAACTGTTAGTTACTTTCTGTTATTTTTGTTACTATTTATTGTCCATACTCCATTGTACTTTCATTATGTCTTTGCCTAGACTCTCTGTCTTGAGAAGGGGATCTATTAGAATCAACCTCTCTACATCACTTCTGAGGTAGAGATGAGGTATGCGTACATACTGCCTTCTCCAGAACCCACTGGGTGGACTTCACTAGGTATGTTGTTGTTTAAGTTGTTTGTGACGAGTGTGAAGTCTGTCAACAAAATTTAAAGGATTGACAACCCCATTGATGCCTCATCCTGCTCAAAATACTTACTGCTTCCATTTTGTGGAAGGCCGTACATCGTTCAGTTCATAGAAAGTTGGAAATTTTTGTGTCTGGTTCAGAACTTGTAGAAGAACCAAGTGATGCTGGACCATTAGCAACTGCGTTTTAAGTTTCCGAATCTCCTGAAGCCTAAGCAAAGTAAATTTAGTTAGGATAAAGAACCTTTCCAACAGTCAGAAGTGATTGACTATAATGATTTGGAGATATGAATAGAGTTGTTATCTTCAAGTGCTATAACATGAAATTTGTTCTGGTTCTTATTCTGTTAATGGCGGTAGTTGCTAGTTGTTTGTTGTGTTCTTGGATCACTAGTTTGTGTAGCTAATTTTGTTGGATATTCTTTCTTCTCTTGGATTTATTGGGGATTGGTGTTGCTGTCCCTAATTTTTTGGGGATCTTCGTGGAACATTTATTATCTTACTTTCTTATATCAATCAAACAAAAGAAATGTAGTTACTTTATTTTGGTCCTTCTATTTGTATGTATAGCAATTATTCTATTGCTGCTGTCTCTAGAGCTTGGGTCTAGTGGTAGGTGTGCAATACGTGACATTTTAGGTGCACCTGAGGGGTTTGAATTCCTGCCGCATGCAAACACCTGATATTTAAGTGAAGAGGAGTAGAGGGGGGACCCGTTATCCACCAAGTCTCAAATTGTTTGTCATTAGCTCTCAGGTTTTTTCTAGGTTGTAAAATAATTATTGCATAGCTAGAAAATAATATTAATATTGTATTGTTGAACCATGTTTAGAAAACCTATTGTTTTGTTGAAACACTTTTCTTTGGAGAACGGTAACTTGAGTTTTACTTTTTACTATATTAGAAAAGGTTTCTTCAACATGTGTGTTTTGTATCTTTTAATTTAAATCTGGGGATTTCTTTGTCATTTTAGTACTTCACTATACCTTATGTGTCTTGTAAAGCTATATTGAATTGACACGTTATTATCATGTGTGTGTTGTTATTAATGTATGGTTTCATCTTTCCACTTCTCCCTTCACCGCTATGTATTCCTAGGAATCATAGAACCTCAAATCTTATCTGTTTGTTTCCATCATTCATCCTGGGTAAGGCTCCTCCAAATTTCTTTGATGTTTTCCTAACATTTCCATTTTTTTCAGAACTATAATGGTTGGTTTTCCCATGGTTGTTGTAATTGTTAACCTTAAACAACTATGATGATAAAAATGATCACTTATGTTTGAAGGTAGATTCAAAGTAGTCCCTTAGCTATGCAGTTATCAGTTTTAATTCAACATCTGAGTATCTTCATATTTCCTTCTATTCTTATTTGGGTTTGTTGTTGATGTTCAATTCTGTTTGTGCTTTGGAGACCCCAATAATTTGAATCGTAGTGGCTTCAATTTTTTGTTTCCTTATTTTGTTTTTTCACCGCCTCCTTTTGCATTTTCTGGATGCTATTTTCTCTATTTTTTCAATTTCAATTTTTGTTTTGACTTTTGTTATTTGATACTTTTAGGTTCTGAAATTATTTTCACTTACAGTGTGAAGTTAACTATCGGCTGCTACTTCTATCAGATTTTCAGCTACGGATATGTCATGTTTTCTTCCTCCCGTTGTTCCAATTTTTCTTTTTATCGTGCATTAGTTTTCTCTTTCTTGATTGAGTTGTAGATAATGGTATGCTAATACTCGAGTGGAAGAGTGAGATCAAGAATTAAGGATCACTTTTTAAGTTAATTTCTTGTCACTTTGAGATTATGAAATTGGCATTTGGTGAACTGAATTGTTATTTTTTACACTCCAAATTTTGTGAAGTTCTCAAATATTATCTTATTGTCTCCTTTATTGTACATTTTTTGTCATTTTAGTTATTAGTTGAGGGTACAATTCATTACATTGTATCTAACTACAAGTGCATATTACATTCTTATGGGAATATTAAAATATAACATGTCTATTACATTGCTAGAAACAAGAAAATTTTGCACTTTTTATAACATCAGGCAAGATTACAATTCCCTTGCACCCTCATCACCTATGTGGTGTAGCAAAATCCAAATCACATATGCACCAATTTGATAATGAGATCAGCTCATGAGGCGCTAGATGGGTATCTAGAATACCATGGAGACTGGACAGATTCAGCTTCAGAAATTTTAGCACCAAATGAATTATTAAAGTGTTTCAAGTAATGCAATGTCTACTAAAAGCATACTAGAAAAATCGTACCTGATAACCATCCATATTAGCTGCATTTAGACGACCACCCTCTTGTAGTAAGAGCTCAGCAACTTGCACTACTCCTCGAACAACACTCCAGTCCAATGTTGTTTGCTCTGTATGATCTGCAACATTTACATGTCATCCCTGCTGCCAAGCGCATCACCATCACTAGCCATCAATTCCCTACCAACCAAAAAGTTAAGGAATAATAAACACACAACTAAAGAATAGCAATCAACATAAAAGTCGATAATTCTGTCTTATTAATAGTACTTAATTCCTTTATTAGAATTATATAGACCTAGACATACCTAAGTGATTTCATACCGCTGATCCAACTAGTGGGATTGAAGGCAAGCTGAATTATTGATTCATTGATTGTTACTTGATACCGGGTACTTGTATGAATTTCTTTTGGGCTTTTTGCTTTCAACAACTATGTTCAGCTGGTTCTTGATCTGAAGTGGACGTGTTTGGGGAAATTTAAACAAAATAGGAGGTTACAAGTACCTTCTCTTAGAGACACTACTGAAAATTCATATTAGTGAGTTTGAAATATCAACTTTGATTTCTACATAAATTGACGACTTCAACTAACTTCATTAATGAATGGTAAGTCCTATAGGGATATAGTAGTGGTTTACCTGTAAGATCATTCCTATGAAGAATGAAATTCTTGGTTGTCTGGTTTGTTTTCCTTTGGTCAACCTACAAATGCATGTTGGAATGAAATAATGTGGTAATGACTACGTTGTTGCTCACTGCTTGAATAATGTCATTGTTCCATAATCGATGAGCTTTCGATCACCAAGGTTGAGCATCCTACTTTGATGATGTTCATTTTATTTGTGTATAGTTGACACTTCTTAAAAATCATATTTGCATGAATGATCAACCTTGCATTCATGTACATTCTCACAATAACATGAAGAGAGTTCTTCTATATACATACCTAAACTTTCAATTTCACCAATTACTGAACTTACTTTAATCTGCGTTCTTGCTATTTAAATCCCAAGGTTTAGGCTACAATGAATACAATTGTTATAAGTTTTAAAGGATGTAGGTGAATATAATAAGAGCAGATAGGTTCTATAAGGATTGGTGTATTGGAAGATTGAGTTGGATGATTTTGATTTTTGAGTTGGATGACTCTGAAATTTTCTGTTGAAGCAGTTTTTGTTGACAGAGTTTTTCAGGTCTAGAGTTTCAGAAATTGAGAAAACAGTTAGGAGACCTCGAATGACTGCCACTTATAATAGTCTGATTAATTTGTATGGAAGGCCTGCAAATGTGTTTAATGAGATGTTGAAAATCTGATTTTGGACACTGTAACATTTAATACTATGATTTTTGTTTCTGTAAGTCATGGCTTCCTGAAAAAGGTGAAAGTTTTGGAGAACAAGATGGAGTAGGGAGGAATATTTCCTAACACTAAAACATACAACATCTTCCTGTTTCTTTATGCTAATGCAGGTAAGATTGATAGGATTCTTTGGTGGCACAAAAAGACAAGTACAATATGTGAAAAGCCGATGTTTATATATATATATATATATATGCTCATATTTAGCTCGTAAAAATATGTCAATGTAGCACGAGCCATTTCTGCCTAGTATTAAAGAAAACTAATACTTCTAGCAACTAGACTCAAAAATATTATGACCTACCTACTCTTGAGTGCAATTTCTGATTCTTAGCATAGACTTGTCTTGGCTGAGAGATCAATCAAGAGGTCACTACTGCATCAGATTGACTCTGTCAGTGTGTCGTTCCGTTACTCTCTCCTCTACATGTTTGTTTTTTCCCAATAAATCAATCAATTTATTAATACCAGCTTTAGAGGATATATCAGTTGTACGAATCCTTTATATCAATCACGTTCTATTAGGGCCCATTTGATTGTAGTACTCAATAATCGATATAAAATTAAACTTGAGGATCTGTACATTGACACTTGTAACACCAACATAAAGCTCTCTAACAAAAGTAAAAACACCTGACAATCATTAAATCCAATGTATGTGTAATAACATCTTAATTTTGACTAATTGATATTGCCTTCATGTAACATTTTTTTCTTCTTTTTCTATTGTTGATTTGCAAGAGATCATAGCTCTATTGTCCCCTTTAGCATATTATATTACCGCACCTATTGACAAGTGTATTTGGAACTTTACATAGGGACATGACACTATTTCATGGGATCTTCTCTCGTTTTCTCATTTATGTATGCTACTTGCATATTCATCTTGAGTTTCATATTTCTACAACACATATTCTGCATATTTTAAGTTTAGTGGTCAAACATTCACTCTTATCTGGAACTTGTATTTTATTTTGTTGTTATTCCATTTTTTTGAATTACGATAATCAATCTTCTATGGAAGTAATCCAGAAAGGGCGCATGATAGAATCTTTTTTGTTACTGCTTTGAGGCTGCTTGATCCACTGAAATAGTAAAATCATGTCTATACTTTTCAGGTCTCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAGAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGGCAGTCCAAAAGTAGATCAGGTTGGTCGTCTGGGGACAATGTTACAGGAACTGAAGATTTGAGGAAGGATAACTATCATTACAAGAGCATGTCTCCAGCTTTTGAAAGGCGGGAAAGGCGAAGCAATAGCCACTCTCCAGATAATGGTCGGGCCCAGTCTCACAGGTCTGCTCACAATATTTGGTTTAATGATGCATCATACTCATCATTATCAAAAGATAATTGATTCCTTATTTGTAAAAGGTATTAGCTCTCAAGTAAGGTTGTTACTTGGGTTTGAGATGCATTTCATGTATCAAAATTTGCAAAGAAAGAAGCTCTAGCTGGCGGGACGTCACTACTTTACCTTCTTTTATATTTCAGTTTTACTTGCTCCGAAGTGTGTACAAGTTCATTTGATTTTCCATCATTCGTGTTTGGTGCTCTCTCCCTTTTACCTGATCTCCCCTTTGGGTTGAGGGGGAAGGGAAGAGGGTATTGGGCTAGAAGACATGGTTGATCATACTTCTACTAATATGTTGTGGTTTGTTTGTTTCTCATTTGATAGATACGTCGGCAGAGCCAGGAGCAGGAGCCGGGGAAGGGGAGA-AGGTAGGAGCAGGAGTC-GCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACA</genome_strand>
        <mrna_strand>CAATTTTTGAGTGTTTTTTGCTACTTTGTATTTGTTTTTGATCTGTTTCACTGACTCAAATCAAATCTTGATTCTTTGGCATTATCTCACAACTTCCCATCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCAGATGTTTGTCTT-CTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGATGAAGTTTAGCTGGTGGACCACTTAGTCCTATTGAACCTAGACAGAGGATTTCTGTATTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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................................ATACGT-TG-GCA-GAGCCAGGAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAATTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324435" ref_strand="+" ref_description="SGN-U324435        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains similarity to zinc finger proteins (CCCH type) | chr3:6413623-6415835 REVERSE | Aliases: K24M9.13(evalue: 9e-25, score=111) genbank/nr: gi|15230154|ref|NP_188494.1| hypothetical protein [Arabidopsis thaliana] gi|9294325|dbj|BAB02222.1| gene_id:K24M9.13~unknown protein [Arabidopsis thaliana](evalue: 7e-23, score=111)">
      <seq>tcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgattactatgacaagggcactcggagtacatcctttgagcatggtcaggacaatcaagcaaccagaaccgggaaatcactttgtgagtactttgctgcaggaaagtgctacaaggataattgtgaattctctcacgatgccacatcaagaaatcatgaaattaggcccttggatgacattggtgagcaagtacatcaaatggaatcctgtccagcatctatgataaagaaattagaggaaggactgcaagaagcccaactacaaagtgtcttaaatccctctggtccttctggaatgctaccttcaaatcccatttcttcacttgttcatgctctatatggtcagaccaatcctgagatgagggttctagataactatcatcctccagatggcttagagctgaatacatctggcaactttaagttgcccccggacaattcattctatttggatagagatagtattaaggttcccatggaccaagtgaatcaaacatctactgttgatcctgaacttggagataatgatcaaattgatgaagtgaagcagcaggagaatgaattagttgaagttgatgggaaggataaattagctccgggggagtccaaggatgtgcaagaaaatgatcatccaggagctatgaatctgcatggaaaggttgaggagggaagtggtaacaaagatgaaaaggtgatgcgattattcaaaaacgctctaatagagttcgtcaaggagatcctaaaacccatttggaaagaaggtaagatgagcagagaagttcataaaacaattgttaagaaggtggttgataaggtgactggtgcgattcaaggagaacaagtccctaagacgcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgaggtgccggactccccttctcttctggaaaaatcaaattcaataaggacttgattttccaacatgtactggaaggtttagttatgttagatatctttgtttgctgaaatcacatatcctcatagtgttcactagtgtgatagatttggtttagcaagcttgttttctgttattccgaccatttattttccgatttaccatgtttgagctatatgtaattggccttcctttcttatagattcaatcatatggtagttgtcctgatttctcagtctccctgcttattcgcttgttcgttttcttgttgagtcgattgtagttttaacttttatgattttattaataagtaccttgtttgtctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="64369" stop="66443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64669" g_stop="65626" g_length="958"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="958" r_length="958" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66066" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1273" r_length="315" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1355" polyA_stop="1364"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U324435" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>1255</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64669" e_stop="65626"/>
          <exon e_start="65770" e_stop="66066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATAT-C-C-------TCA-TAGTGTGATAGATTTGGTTTAGCAAGC-TGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGC-AT-TAT-A-T-G--TTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGC</genome_strand>
        <mrna_strand>TCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAGATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGGAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAGCTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGTGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAAATCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTTCACTAGTGTGATAGATTTGGTTTAGCAAGCTTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCTATATGTAATTGGCCTTCCTTTCTTATAGATTCAATCATATGGTAGTTGTCCTGATTTCTCAGTCTCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324436" ref_strand="+" ref_description="SGN-U324436        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains similarity to zinc finger proteins (CCCH type) | chr3:6413623-6415835 REVERSE | Aliases: K24M9.13(evalue: 5e-19, score=90.9) genbank/nr: hypothetical(evalue: 3e-17, score=90.9)">
      <seq>gaaaaggtgatgcgattattcaaaaacgctctaatagagttcgtcaaggagatcctaaaacccatttggaaagaaggtaagatgagcagagaagttcataaaacaattgttaagaaggtggttgataaggtgactggtgcgattcaaggagaacaagtccctaagacgcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgaggtgccggactccccttctcttctggaaaattcaaattcaataaggacttgattttccaacatgtactggaaggtttagttatgttagatatctttgtttgctgaaatcacatatcctcatagtgtgatagatttggtttagcaagctgttttctgttattccgaccatttattttccgatttaccatgtttgagcattatatgttcctttcttatagattcaatcacatggtagttgtgctgatttctcagtctccctgcgttttcttgttgagtcgattgtagtcttaacttctttatgattttattagtgagtaccttgtttgtctgaaannnnnaannaannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="65099" stop="66438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65399" g_stop="65626" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66137" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="596" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66138" i_stop="66283" i_length="146">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66284" g_stop="66313" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="626" r_length="30" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U324436" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65399" e_stop="65626"/>
          <exon e_start="65770" e_stop="66137"/>
          <exon e_start="66284" e_stop="66313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATAATATTCGGGTGTGTTCCAGTCTTTTACTAGTTGGAGTTTTTAGTTCATTTTCTTTCCTTATTTTATAAACTAGTTTCTGAGTACGTGCGTTGCATGTGTGTCCATTACAACGATTAAGTATATATCATTAGTAATAAAACAACAATTACAAAAAAAATAAAATAAAATAAAAA</genome_strand>
        <mrna_strand>GAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGAA..................................................................................................................................................ANNNNNAANNAANNNAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="70692" stop="69657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70392" g_stop="69933" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70392" e_stop="69933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACTATACACACAAAAAAAATAGTTTAATTTTTAATTTTTTAAACTAAGAAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTACAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTTAATAATTTTTTT--AAAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCTACTTTTATAACGAGGG-TATATCAGCTCCAAATGATAAAGTTGAGGGGTATATCAGACCCTTTGATCTATTCCAAATAATATAATTG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTT-TTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332323" ref_strand="+" ref_description="SGN-U332323        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycogenin glucosyltransferase (glycogenin)-related, contains similarity to glycogenin-1 from Mus musculus (SP:Q9R062), Rattus norvegicus (SP:O08730), Homo sapiens (SP:P46976) | chr1:28983788-28986185 REVERSE | Aliases: T14N5.1, T14N5_1(evalue: 3e-46, score=182) genbank/nr: gi|22330689|ref|NP_177838.2| glycogenin glucosyltransferase (glycogenin) - related [Arabidopsis thaliana] gi|17065238|gb|AAL32773.1| Unknown protein [Arabidopsis thaliana] gi|21387185|gb|AAM47996.1| unknown protein [Arabidopsis thaliana](evalue: 3e-44, score=182)">
      <seq>tgtaactggaatgtgggtaagttgcaggagtttgcaagtgatgtggcacacaggacgtggtggaaggtccatgatgccatgccagataacttacataaatattgtttgcttcgatcccactctaatgcagccttctgtttagagtgggatcgaagagaagctgagaaagctaactattcagatggtcattggaagatcaaaataaaagacccacgtttggaaacttgttttgaagaattttgcttctgggaaagcatgttatggcactggggggaaacaaactggacagataatgccacctcttcaccaacacctcccatggtcaatactgcttcactttcttctttgtaactaggaggttctgttgctatacctcgctcgtctgtaagtaatacggagtcacaacttgaatgtcaaccaatggccattagtacgcatggtgttcgcacttgccctacccttgaatatagtccactctgcagctgtgttgcttcaattgcttctcatcttttcttgtttcctatacgactgttttctcttgtcctcaagagatgttcttttcttaattgtccttttacttaagttataaggggagcattggagcaaacaattaagttgtctccgtatggattcgttctgtgggaacaccccttgatgcttgagtcagggtaggcagactacattaaaccccttggaatgtggcccttcctcagaccatgcgtgaacatgtgatgtttcgcgcacctggttgtcctttttctttataatagtggtaaaggtattgtattgaagttcagcaaaatgctgcaacgaggagtcactgtctcattgagaaatctgtttgttttgaggcaccatattactgttgtagtgagtgtacaaacgaagcagacttacactatttatgtatgttgttgattgtagaaacccaatttttcatcaaaggaggtttggatgaatcacttgaatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="78338" stop="79906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78638" g_stop="79601" g_length="964"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="970" r_length="970" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="973" polyA_stop="988"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U332323" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>964</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78638" e_stop="79601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGT-CTAAAC--A-GAAGGCTGC--ATTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</genome_strand>
        <mrna_strand>TGTAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTCGATCCCACTCTAATGCAGCCTTCTGTTTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341081" ref_strand="+" ref_description="SGN-U341081        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 5e-24, score=114)">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="91817" stop="92918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92117" g_stop="92618" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U341081" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92117" e_stop="92618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATGACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTTCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGGTAGTAGAACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTCAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326341" ref_strand="+" ref_description="SGN-U326341        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: SCPL42 | serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase II-3 precursor (SP:P52711) (CP-MII.3. (Hordeum vulgare) | chr5:16905461-16908420 FORWARD | Aliases: K5J14.4, K5J14_4, SCPL42(evalue: 4e-29, score=121) genbank/nr: gi|15238328|ref|NP_199039.1| serine carboxypeptidase -related [Arabidopsis thaliana] gi|10177009|dbj|BAB10197.1| serine carboxypeptidase II-like [Arabidopsis thaliana] gi|13605557|gb|AAK32772.1| AT5g42240/K5J14_4 [Arabidopsis thaliana] gi|23505957|gb|AAN28838.1| At5g42240/K5J14_4 [Arabidopsis thaliana](evalue: 3e-27, score=121)">
      <seq>tttttaacctcatcataacaccaccgcacaactcaccaaccccaagaaccaaatacctgcaaactctcattctatcctacttcttacctatttagttttcttgttaataattatctatatatagtaaaaaatagctttctgtttataaagtttccggaattcacgtgcttttcttatccccttttcctctttttcttataaagatttgattttatttttaataacagaggatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagagaaggatttagtgaaggcattgcctggacaacctaaggttggttttaggcaatatgcagggtatgtagatgtggatgtgaaagctgggaggagtttgttttactactttgttgaagctgaggtgaaacctgatgagaaacctctaactctttggctcaatggagggccaggttgctcatcaattggtggaggtgcttttacagagttgggaccattctttccacaggtgacggtagaggacttcgaagaattcaaaatcatggaataaagctcaaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112050" stop="113947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112350" g_stop="112887" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113538" g_stop="113645" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="642" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113745" g_stop="113756" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="653" r_length="11" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U326341" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112350" e_stop="112887"/>
          <exon e_start="113538" e_stop="113645"/>
          <exon e_start="113745" e_stop="113756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAGGTGTGTTCTTTTTTTTTTTAACTTTTTAACTTTTGTTGATTCATTCTAAAGAAATGTGACTAGGAATTTTCTGTGTACTTTCATGTAGTTTATTTGGTAGTACTATTTGCTTGGGGTTTGAGCTTTTGTTTTTTGTTTGTTTGTTGTGTGTTGCTTCTTTTTTTTTTTAAATGGCTTTATGTATTCTTTTGATGTTTGGACCAAGTGTCACAAGCTTACAAGAGATTGAATTTGATATAGTGAGTTGGAGCTTAAAACTGTATATGAATTGAACCAATCTAGCGCTTCAATAATTAGAGTGAACTTGTAATAGAGTGAAAGTTTACATCTTAAATGAGTGCTGCCATTAAACTAAACAATTACATACTCGGTGTAATTTCACAAGTGGGGTCTAGGAGGGTGATCTGTATGCAGCCTTACCCCTCCGATACACCGTTGGCTTAACTGAAGCATATAGAAAATAATGGAGGAAAAGAACAGTAGCAGAGTCAAGAAAACTATAATGTCAAGAACAGTAAGCCTGATACTAAACTAGTGAAAATAAATTGCAGAAATGTACTTTTTTCTGTACTTCTCTTATGCTATGAATTTGGTAAATTATGTCAAGGCAAGAGTCAAGAACACTAAAATGTCTCATGTTTATGTTTCAGGGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAGGTATGCTAAGTAGGGTAGGGAGTAGCTGATTATAACATGTTTAGAACATTATCGAGTAATGAAAATGAACTTACCACTTCATGTCTTTGTCTACTGTAGCATCAAATCTCC</genome_strand>
        <mrna_strand>TTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCAAACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTT-CCACAGGTGACGGTAGAGGACTTCGAAG-AATTCAAAATCATGGAATAAAG...................................................................................................C-TCAAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338333" ref_strand="+" ref_description="SGN-U338333        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: SCPL42 | serine carboxypeptidase S10 family protein, similar to Serine carboxypeptidase II-3 precursor (SP:P52711) (CP-MII.3. (Hordeum vulgare) | chr5:16905461-16908420 FORWARD | Aliases: K5J14.4, K5J14_4, SCPL42(evalue: 4e-40, score=162) genbank/nr: gi|15238328|ref|NP_199039.1| serine carboxypeptidase -related [Arabidopsis thaliana] gi|10177009|dbj|BAB10197.1| serine carboxypeptidase II-like [Arabidopsis thaliana] gi|13605557|gb|AAK32772.1| AT5g42240/K5J14_4 [Arabidopsis thaliana] gi|23505957|gb|AAN28838.1| At5g42240/K5J14_4 [Arabidopsis thaliana](evalue: 3e-38, score=162)">
      <seq>caaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcctttcttacccccttttccttttcctgttataaagatttgatttttttagtaagagagcatgtgaatgagcttaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtagtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcatggtatgtagaagtggatgtgaaagctgggaggagtttgttttactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112099" stop="113132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112399" g_stop="112832" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-U338333" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112399" e_stop="112832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTT</genome_strand>
        <mrna_strand>CAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCCTTTCTTACCCCCTTTTCCTTTTCCTGTTATAAAGATTTGA--TT-TTTTTAGTAAGAGAGCATGTGAATGAGCTTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTAGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCATGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14745" PGL_stop="12749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14745" e_stop="14200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="14745" e_stop="14200" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14745" stop="14200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAA</gDNA_template>
            <first_frame> N  R  L  L  R  R  I  *  R  C  S  L  L  R  Q  N  F  R  L  A  D  V  S  S  R  L  W  C  L  V  F  T  L  N  L  *  D  T  T  A  I  S  F  Y  F  F  I  I  F  F  F  L  G  G  I  S  F  L  Y  E  R  K  R  N  F  Q  N  F  W  C  F  *  *  Y  I  P  I  F  V  Q  F  T  W  Y  C  R  Q  F  H  Q  L  F  F  R  S  *  K  G  I  I  *  K  R  G  Q  *  *  R  A  K  I  Y  G  M  L  K  L  I  D  P  R  R  A  L  S  R  L  I  R  V  G  R  N  L  C  K  I  M  T  *  E  L  E  I  L  L  C  L  S  T  W  V  I  C  V  S  V  L  H  F  L  I  Q  L  A  V  I  R  S  C  W  R  R  V  K  *  Y  L  P  R  R  K </first_frame>
            <second_frame>  I  D  C  S  D  E  F  N  D  A  V  F  F  A  R  T  S  D  *  Q  T  F  L  Q  G  Y  G  A  W  F  S  L  *  T  C  K  I  L  L  P  F  L  S  I  S  S  *  F  F  F  F  W  V  V  S  V  F  Y  M  N  G  R  E  T  S  R  I  S  G  V  F  D  S  I  F  Q  F  L  F  N  S  P  G  I  A  D  N  S  T  S  F  F  S  E  A  K  R  G  *  F  R  K  G  D  N  N  K  G  Q  R  Y  M  E  C  *  N  *  S  I  R  E  G  H  Y  L  V  *  *  G  L  G  G  I  C  A  K  S  *  P  K  S  W  R  F  C  C  V  *  A  L  G  *  Y  A  F  Q  C  Y  T  S  *  F  N  W  L  *  *  E  V  V  G  E  E  *  S  S  T  F  P  G  E   </second_frame>
            <third_frame>   S  I  A  P  T  N  L  T  M  Q  S  S  S  P  E  L  P  I  S  R  R  F  F  K  V  M  V  P  G  F  H  S  K  L  V  R  Y  Y  C  H  F  F  L  F  L  H  N  F  F  F  F  G  W  Y  Q  F  S  I  *  T  E  E  K  L  P  E  F  L  V  F  L  I  V  Y  S  N  F  C  S  I  H  L  V  L  Q  T  I  P  P  A  F  F  P  K  L  K  G  D  N  L  E  K  G  T  I  I  K  G  K  D  I  W  N  V  E  I  N  R  S  E  K  G  I  I  S  F  D  K  G  W  E  E  F  V  Q  N  H  D  L  R  V  G  D  F  A  V  F  E  H  L  G  D  M  R  F  S  V  T  L  L  D  S  T  G  C  D  K  K  L  L  E  K  S  E  V  V  P  S  Q  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14566" stop="14201"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEEKLPEFLVFLIVYSNFCSIHLVLQTIPPAFFPKLKGDNLEKGTIIKGKDIWNVEINRSEKGIISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRFSVTLLDSTGCDKKLLEKSEVVPSQEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14738" e_stop="14642"/>
            <exon e_start="14488" e_stop="14167"/>
            <exon e_start="13603" e_stop="13494"/>
            <exon e_start="13362" e_stop="12749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.987" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14738" e_stop="14642" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="14488" e_stop="14167" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13603" e_stop="13494" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.921">
            <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="13362" e_stop="12749" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="12749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT : ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG : AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG : CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGATCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTG</gDNA_template>
            <first_frame> C  S  D  E  F  N  D  A  V  F  F  A  R  T  S  D  *  Q  T  F  L  Q  G  Y  G  A  W  F  S  L  *  T   : Y  N  S  T  S  F  F  S  E  A  K  R  G  *  F  R  K  G  D  N  N  K  G  Q  R  Y  M  E  C  *  N  *  S  I  R  E  G  H  Y  L  V  *  *  G  L  G  G  I  C  A  K  S  *  P  K  S  W  R  F  C  C  V  *  A  L  G  *  Y  A  F  Q  C  Y  T  S  *  F  N  W  L  *  *  E  V  V  G  E  E  *  S  S  T  F  P  G  E  K  E  K  G  E  I  C  S  A  R  N  R :   E  K  E  S  *  G  R  S  T  S  L  P  M  H  E  R  K  F  *  V  H  G  K  N  K  R  I  *  R  E  K  T  F  S  L  Y   : A  Y  T  H  R  V  L  S  V  K  C  T  L  S  E  Y  N  H  D  V  N  R  P  V  G  *  I  M  S  C  E  S  E  N  L  Q  W  W  E  D  S  I  C  L  Y  Y  Q  R  L  A  *  F  L  F  K  Q  Q  A  K  S  R  R  C  L  P  L  P  T  *  S  L  K  K  R  L  K  F  H  C  H  R  C  S  C  F  V  G  C  R  L  F  F  Y  L  Y  S  F  D  F  Y  *  L  V  L  P  C  K  L  I  S  L  G  I  G  S  F  *  I  D  L  I  G  *  S  T  T  S  S  T  L  A  A  A  E  *  L  G  S  V  I  C  *  E  A  K  M  L  M  N  K  L  H  Q  E  N  N  L  R  G  N  S  S  Q  K  E  R  S  K  I  I  P  T  S  I  *  W  T  I  W  E  E  R  N  K  R  C  F  E  D  K  S  S  H  I  Q  K  M  K  L  K  C  L  V  L  L </first_frame>
            <second_frame>  A  P  T  N  L  T  M  Q  S  S  S  P  E  L  P  I  S  R  R  F  F  K  V  M  V  P  G  F  H  S  K  L  :  T  I  P  P  A  F  F  P  K  L  K  G  D  N  L  E  K  G  T  I  I  K  G  K  D  I  W  N  V  E  I  N  R  S  E  K  G  I  I  S  F  D  K  G  W  E  E  F  V  Q  N  H  D  L  R  V  G  D  F  A  V  F  E  H  L  G  D  M  R  F  S  V  T  L  L  D  S  T  G  C  D  K  K  L  L  E  K  S  E  V  V  P  S  Q  E  K  K  K  K  V  K  S  A  Q  P  G  I   : E  K  R  K  V  E  G  D  Q  P  H  Y  Q  C  M  K  G  S  S  E  F  T  A  R  I  K  E  Y  N  V  R  K  R  S  P  Y  M  :  H  I  P  T  E  F  C  Q  S  N  A  L  F  Q  N  T  T  M  T  L  T  G  P  S  G  K  S  C  P  V  S  L  R  I  C  N  G  G  K  T  L  Y  A  C  I  T  R  G  W  H  D  F  F  S  S  N  K  L  K  V  G  D  V  C  L  F  Q  L  D  R  S  K  S  D  S  N  S  I  A  I  D  V  R  V  L  *  A  A  D  F  S  F  I  F  I  L  L  I  F  T  S  *  C  Y  L  V  N  L  F  H  *  V  *  V  L  F  K  L  T  *  L  A  D  Q  Q  Q  V  V  L  *  L  L  Q  S  N  *  A  V  L  Y  V  E  K  Q  K  C  *  *  I  S  C  I  K  K  I  I  L  E  V  T  Q  A  R  R  R  D  R  R  S  F  Q  R  L  F  S  G  Q  Y  G  K  K  G  T  K  D  A  L  K  I  N  Q  V  I  S  R  R  *  S  *  S  V  W  Y  F   </second_frame>
            <third_frame>   L  R  R  I  *  R  C  S  L  L  R  Q  N  F  R  L  A  D  V  S  S  R  L  W  C  L  V  F  T  L  N  L :   Q  F  H  Q  L  F  F  R  S  *  K  G  I  I  *  K  R  G  Q  *  *  R  A  K  I  Y  G  M  L  K  L  I  D  P  R  R  A  L  S  R  L  I  R  V  G  R  N  L  C  K  I  M  T  *  E  L  E  I  L  L  C  L  S  T  W  V  I  C  V  S  V  L  H  F  L  I  Q  L  A  V  I  R  S  C  W  R  R  V  K  *  Y  L  P  R  R  K  R  K  R  *  N  L  L  S  P  E  *  :  R  K  G  K  L  R  E  I  N  L  T  T  N  A  *  K  E  V  L  S  S  R  Q  E  *  K  N  I  T  *  E  N  V  L  L  I  C :   I  Y  P  Q  S  F  V  S  Q  M  H  S  F  R  I  Q  P  *  R  *  Q  A  R  R  V  N  H  V  L  *  V  *  E  F  A  M  V  G  R  L  Y  M  L  V  L  P  E  A  G  M  I  S  F  Q  A  T  S  *  K  *  A  M  F  A  S  S  N  L  I  A  Q  K  A  T  Q  I  P  L  P  S  M  F  V  F  C  R  L  Q  T  F  L  L  S  L  F  F  *  F  L  L  V  S  V  T  L  *  T  Y  F  I  R  Y  R  F  F  L  N  *  L  D  W  L  I  N  N  K  *  Y  S  S  C  C  R  V  I  R  Q  C  Y  M  L  R  S  K  N  A  D  E  *  V  A  S  R  K  *  S  *  R  *  L  K  P  E  G  E  I  E  D  H  S  N  V  Y  L  V  D  N  M  G  R  K  E  Q  K  M  L  *  R  *  I  K  S  Y  P  E  D  E  V  E  V  F  G  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14737" stop="14642"/>
                    <exon start="14488" stop="14167"/>
                    <exon start="13603" stop="13494"/>
                    <exon start="13362" stop="13105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APTNLTMQSSSPELPISRRFFKVMVPGFHSKLTIPPAFFPKLKGDNLEKGTIIKGKDIWNVEINRSEKGIISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRFSVTLLDSTGCDKKLLEKSEVVPSQEKKKKVKSAQPGIEKRKVEGDQPHYQCMKGSSEFTARIKEYNVRKRSPYMHIPTEFCQSNALFQNTTMTLTGPSGKSCPVSLRICNGGKTLYACITRGWHDFFSSNKLKVGDVCLFQLDRSKSDSNSIAIDVRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32098" PGL_stop="16298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32098" e_stop="31894"/>
            <exon e_start="26577" e_stop="26497"/>
            <exon e_start="24484" e_stop="24306"/>
            <exon e_start="22114" e_stop="21959"/>
            <exon e_start="21376" e_stop="21269"/>
            <exon e_start="20393" e_stop="20272"/>
            <exon e_start="17205" e_stop="17074"/>
            <exon e_start="16859" e_stop="16749"/>
            <exon e_start="16631" e_stop="16548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.389" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.641" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="32098" e_stop="31894" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.389">
            <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26577" e_stop="26497" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26496" i_stop="24485" i_length="2012"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24484" e_stop="24306" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22114" e_stop="21959" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.641" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21376" e_stop="21269" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20393" e_stop="20272" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17205" e_stop="17074" e_length="132"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16859" e_stop="16749" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.958">
            <gDNA_intron_boundary i_start="16748" i_stop="16632" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="0.952">
            <gDNA_exon_boundary e_start="16631" e_stop="16548" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32098" stop="31894"/>
              <exon start="26577" stop="26497"/>
              <exon start="24484" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24473" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16631" stop="16548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG : GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATT : AGGACATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG : GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG : CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG : GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG : GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG : ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG : AAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTC</gDNA_template>
            <first_frame> P  P  K  I  S  *  D  L  K  Q  F  F  P  L  N  S  P  D  Q  F  L  C  I  F  L  D  L  Y  C  *  N  H  T  R  N  L  K  K  N  G  T  C  S  S  G  E  G  L  Y  Q  S  H  I  A  R  H  F  W  D  E  S  P  H  S  *  F  F  Y   : G  *  F  C  *  C  C  V  L  S  V  R  A  S  E  E  G  G  V  P  G  G  A  G  R  F  Y   : *  D  M  A  K  F  V  D  N  Y  P  E  Y  R  K  M  Q  G  N  V  S  K  H  V  T  L  V  T  E  M  S  K  I  V  E  E  R  K  L  M  L  V  S  Q  T  E  Q  E  L  A  C  N  G  G  Q  G  A  A  F  E  :  A  V  T  N  L  L  N  N  D  N  I  S  D  V  D  R  L  R  L  V  M  L  Y  A  L  R  Y  E  K  E  S  P  V  Q  L  M  Q  L  F  N  K  L  A  S  R  S  P  K  Y  K  P  G  :  L  V  Q  F  L  L  K  Q  A  G  V  D  K  R  T  G  D  L  Y  G  N  R  D  L  L  N  I  A  R  N  M  A  R  G  L  K  :  G  V  E  N  V  Y  T  Q  H  Q  P  L  L  F  Q  T  M  E  N  I  T  R  G  R  L  R  D  V  D  Y  P  Y  V  G  N  H  F  Q  Q  A  R :   P  Q  E  V  V  I  F  V  V  G  G  T  T  Y  E  E  S  R  S  V  A  L  Q  N  S  T  N  S  G  I  R  F  I  L  G  G  S  S  L  L  N  S  K  R :   F  L  K  D  L  E  E  A  Q  R  I  A  R  I  S  T  N  M  L  *  I  L  D  S  T  V  P  C  E  N  L  K  I  *  N  H  R :   S  T  *  R  A  E  F  A  D  E  N  S  H  K  Y  I  V  *  P  L  *  S  S  S  F  I  A   </first_frame>
            <second_frame>  L  Q  R  L  A  E  I  *  N  N  F  F  H  *  I  H  Q  I  N  F  S  A  Y  F  W  I  C  I  A  E  I  I  Q  G  I  *  K  K  M  V  L  V  A  A  V  R  D  Y  I  N  R  I  L  Q  D  I  S  G  M  K  V  L  I  L  D  S  S  T  :  V  S  S  V  S  V  V  Y  S  Q  S  E  L  L  K  K  E  V  F  L  V  E  L  V  D  S  I  :  R  T  W  L  N  L  *  T  T  T  Q  N  T  E  K  C  K  G  M  F  L  S  T  *  H  W  L  R  K  *  A  K  *  L  K  S  E  N  *  C  W  F  H  R  R  N  K  S  W  L  A  M  V  D  K  G  Q  H  S  R :   L  *  Q  I  Y  *  I  M  I  I  S  L  M  L  T  A  C  A  L  S  C  C  T  P  C  A  M  R  R  R  V  L  F  N  *  C  S  Y  S  T  N  *  H  L  G  R  P  S  I  S  L  G :   *  C  N  S  F  *  S  K  Q  E  L  I  R  E  L  E  I  C  T  G  T  E  I  S  *  T  L  H  V  T  W  L  V  G  S  R :   G  L  R  M  C  I  P  S  I  N  H  F  Y  S  K  L  W  R  T  S  P  G  V  D  *  E  M  W  T  T  L  M  *  E  I  T  F  S  K  Q   : G  H  R  K  W  *  F  S  L  L  V  G  Q  H  M  K  S  H  V  R  L  L  Y  R  T  L  R  T  L  A  F  V  L  Y  L  V  V  L  P  F  *  I  L  K   : D  S  *  R  T  L  K  K  L  R  E  S  L  V  *  A  P  I  C  F  E  F  W  T  L  Q  Y  L  V  K  I  *  K  Y  R  I  T   : E  V  H  N  E  L  S  L  L  M  K  I  P  I  N  T  L  C  S  H  C  N  H  R  L  S  *  L  </second_frame>
            <third_frame>   S  K  D  *  L  R  S  E  T  I  F  S  T  E  F  T  R  S  I  S  L  H  I  F  G  F  V  L  L  K  S  Y  K  E  F  K  K  K  W  Y  L  *  Q  R  *  G  T  I  S  I  A  Y  C  K  T  F  L  G  *  K  S  S  F  L  I  L  L  R :   L  V  L  L  V  L  C  T  L  S  Q  S  F  *  R  R  R  C  S  W  W  S  W  *  I  L  L :   G  H  G  *  I  C  R  Q  L  P  R  I  P  K  N  A  R  E  C  F  *  A  R  D  T  G  Y  G  N  E  Q  N  S  *  R  A  K  T  D  V  G  F  T  D  G  T  R  V  G  L  Q  W  W  T  R  G  S  I  R   : G  C  D  K  S  I  E  *  *  *  Y  L  *  C  *  P  P  A  P  C  H  A  V  R  L  A  L  *  E  G  E  S  C  S  T  N  A  A  I  Q  Q  I  S  I  S  V  A  Q  V  *  A  W   : A  S  A  I  P  S  K  A  S  R  S  *  *  E  N  W  R  S  V  R  E  Q  R  S  P  E  H  C  T  *  H  G  S  W  A  Q   : G  G  *  E  C  V  Y  P  A  S  T  T  S  I  P  N  Y  G  E  H  H  Q  G  S  T  E  R  C  G  L  P  L  C  R  K  S  L  S  A  S  K  :  A  T  G  S  G  D  F  R  C  W  W  D  N  I  *  R  V  T  F  G  C  S  T  E  L  Y  E  L  W  H  S  F  Y  T  W  W  F  F  P  S  K  F  *  K  :  I  L  E  G  P  *  R  S  S  E  N  R  S  Y  K  H  Q  Y  A  L  N  F  G  L  Y  S  T  L  *  K  S  E  N  I  E  S  Q  :  K  Y  I  T  S  *  V  C  *  *  K  F  P  *  I  H  C  V  A  T  V  I  I  V  F  H  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24482" stop="24306"/>
                    <exon start="22114" stop="21959"/>
                    <exon start="21376" stop="21269"/>
                    <exon start="20393" stop="20272"/>
                    <exon start="17205" stop="17074"/>
                    <exon start="16859" stop="16799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMAKFVDNYPEYRKMQGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNDNISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMENITRGRLRDVDYPYVGNHFQQARPQEVVIFVVGGTTYEESRSVALQNSTNSGIRFILGGSSLLNSKRFLKDLEEAQRIARISTNML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31989" stop="31894"/>
                    <exon start="26577" stop="26497"/>
                    <exon start="24484" stop="24464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVLVAAVRDYINRILQDISGMKVLILDSSTVSSVSVVYSQSELLKKEVFLVELVDSIRTWLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24328" e_stop="24306"/>
            <exon e_start="22114" e_stop="21959"/>
            <exon e_start="21376" e_stop="21269"/>
            <exon e_start="20393" e_stop="20272"/>
            <exon e_start="17205" e_stop="17074"/>
            <exon e_start="16859" e_stop="16749"/>
            <exon e_start="16659" e_stop="16298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.641" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.542" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24328" e_stop="24306" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22114" e_stop="21959" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.641" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21376" e_stop="21269" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20393" e_stop="20272" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17205" e_stop="17074" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16859" e_stop="16749" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.542">
            <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="16659" e_stop="16298" e_length="362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16659" stop="16298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGACAAGGGGCAGCATTCGAG : GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG : CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG : GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG : GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG : ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG : TCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTT</gDNA_template>
            <first_frame> V  D  K  G  Q  H  S  R :   L  *  Q  I  Y  *  I  M  I  I  S  L  M  L  T  A  C  A  L  S  C  C  T  P  C  A  M  R  R  R  V  L  F  N  *  C  S  Y  S  T  N  *  H  L  G  R  P  S  I  S  L  G :   *  C  N  S  F  *  S  K  Q  E  L  I  R  E  L  E  I  C  T  G  T  E  I  S  *  T  L  H  V  T  W  L  V  G  S  R :   G  L  R  M  C  I  P  S  I  N  H  F  Y  S  K  L  W  R  T  S  P  G  V  D  *  E  M  W  T  T  L  M  *  E  I  T  F  S  K  Q   : G  H  R  K  W  *  F  S  L  L  V  G  Q  H  M  K  S  H  V  R  L  L  Y  R  T  L  R  T  L  A  F  V  L  Y  L  V  V  L  P  F  *  I  L  K   : D  S  *  R  T  L  K  K  L  R  E  S  L  V  *  A  P  I  C  F  E  F  W  T  L  Q  Y  L  V  K  I  *  K  Y  R  I  T   : V  *  M  G  I  L  G  F  C  R  S  T  *  R  A  E  F  A  D  E  N  S  H  K  Y  I  V  *  P  L  *  S  S  S  F  I  A  S  A  F  C  P  S  E  T  V  L  R  P  P  H  L  C  A  T  F  H  V  *  I  C  C  V  H  V  V  F  S  Y  S  *  D  T  S  L  D  L  *  S  C  S  I  S  V  L  M  S  R  L  L  F  G  I  T  *  S  L  H  M  V  Q  Y  I  L  Q  *  F  L  *  R  *  L  F  N  V  M  F  I  C  P  L </first_frame>
            <second_frame>  W  T  R  G  S  I  R   : G  C  D  K  S  I  E  *  *  *  Y  L  *  C  *  P  P  A  P  C  H  A  V  R  L  A  L  *  E  G  E  S  C  S  T  N  A  A  I  Q  Q  I  S  I  S  V  A  Q  V  *  A  W   : A  S  A  I  P  S  K  A  S  R  S  *  *  E  N  W  R  S  V  R  E  Q  R  S  P  E  H  C  T  *  H  G  S  W  A  Q   : G  G  *  E  C  V  Y  P  A  S  T  T  S  I  P  N  Y  G  E  H  H  Q  G  S  T  E  R  C  G  L  P  L  C  R  K  S  L  S  A  S  K  :  A  T  G  S  G  D  F  R  C  W  W  D  N  I  *  R  V  T  F  G  C  S  T  E  L  Y  E  L  W  H  S  F  Y  T  W  W  F  F  P  S  K  F  *  K  :  I  L  E  G  P  *  R  S  S  E  N  R  S  Y  K  H  Q  Y  A  L  N  F  G  L  Y  S  T  L  *  K  S  E  N  I  E  S  Q  :  S  K  W  G  Y  L  D  S  A  E  V  H  N  E  L  S  L  L  M  K  I  P  I  N  T  L  C  S  H  C  N  H  R  L  S  *  L  P  R  S  A  Q  V  R  R  F  *  D  H  L  I  C  V  P  L  F  M  S  R  F  V  V  Y  M  *  C  S  H  I  P  K  I  L  L  L  T  C  S  L  V  A  Y  L  F  S  C  P  D  C  Y  L  E  S  H  K  A  Y  I  W  Y  S  T  S  Y  S  S  F  C  E  G  S  Y  L  M  L  C  L  F  V  P   </second_frame>
            <third_frame>   G  Q  G  A  A  F  E  :  A  V  T  N  L  L  N  N  D  N  I  S  D  V  D  R  L  R  L  V  M  L  Y  A  L  R  Y  E  K  E  S  P  V  Q  L  M  Q  L  F  N  K  L  A  S  R  S  P  K  Y  K  P  G  :  L  V  Q  F  L  L  K  Q  A  G  V  D  K  R  T  G  D  L  Y  G  N  R  D  L  L  N  I  A  R  N  M  A  R  G  L  K  :  G  V  E  N  V  Y  T  Q  H  Q  P  L  L  F  Q  T  M  E  N  I  T  R  G  R  L  R  D  V  D  Y  P  Y  V  G  N  H  F  Q  Q  A  R :   P  Q  E  V  V  I  F  V  V  G  G  T  T  Y  E  E  S  R  S  V  A  L  Q  N  S  T  N  S  G  I  R  F  I  L  G  G  S  S  L  L  N  S  K  R :   F  L  K  D  L  E  E  A  Q  R  I  A  R  I  S  T  N  M  L  *  I  L  D  S  T  V  P  C  E  N  L  K  I  *  N  H  S :   L  N  G  D  T  W  I  L  Q  K  Y  I  T  S  *  V  C  *  *  K  F  P  *  I  H  C  V  A  T  V  I  I  V  F  H  S  F  R  V  L  P  K  *  D  G  F  E  T  T  S  S  V  C  H  F  S  C  L  D  L  L  C  T  C  S  V  L  I  F  L  R  Y  F  S  *  L  V  V  L  *  H  I  C  S  H  V  P  T  V  I  W  N  H  I  K  L  T  Y  G  T  V  H  L  T  V  V  S  V  K  V  V  I  *  C  Y  V  Y  L  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24326" stop="24306"/>
                    <exon start="22114" stop="21959"/>
                    <exon start="21376" stop="21269"/>
                    <exon start="20393" stop="20272"/>
                    <exon start="17205" stop="17074"/>
                    <exon start="16859" stop="16799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQGAAFEAVTNLLNNDNISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMENITRGRLRDVDYPYVGNHFQQARPQEVVIFVVGGTTYEESRSVALQNSTNSGIRFILGGSSLLNSKRFLKDLEEAQRIARISTNML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42071" PGL_stop="34180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42071" e_stop="41929"/>
            <exon e_start="41030" e_stop="40752"/>
            <exon e_start="39274" e_stop="39130"/>
            <exon e_start="35530" e_stop="35421"/>
            <exon e_start="35171" e_stop="34754"/>
            <exon e_start="34655" e_stop="34180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.728" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="42071" e_stop="41929" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="41030" e_stop="40752" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39274" e_stop="39130" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35530" e_stop="35421" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.728" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35171" e_stop="34754" e_length="418"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34655" e_stop="34180" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42071" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39130"/>
              <exon start="35530" stop="35421"/>
              <exon start="35171" stop="34754"/>
              <exon start="34655" stop="34180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAG : GAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAG : GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT : GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAG : AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG : GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAA</gDNA_template>
            <first_frame> F  I  S  I  P  T  I  Y  S  Y  L  L  L  R  A  F  R  S  T  V  S  P  L  F  L  N  S  N  I  S  F  A  N  R  S  A  S  E  H  S  A  I  D  R  L  *  S  R :   K  W  L  L  S  L  Q  K  N  I  L  M  L  L  R  L  N  L  W  H  H  L  L  I  M  K  K  R  Q  K  R  R  K  R  R  D  F  F  R  *  Y  G  I  V  Y  L  G  P  K  R  M  I  L  R  R  D  C  S  I  F  P  R  R  R  L  L  L  L  P  E  S  I  S  D  P  K  I  G  E  G  *  R  G  I  S  L  Y  F  L  *  F  L  R :   L  L  Q  W  V  M  L  S  *  Q  H  D  P  L  S  *  T  G  K  *  G  H  C  E  F  Y  Q  C  F  C  C  L  A  Y  P  S  L  H  I  Q  R  L  E  V  L  Q  G  C  :  V  N  V  R  T  R  K  L  *  K  N  Y  E  L  K  G  K  P  R  L  R  N  *  K  R  R  Q  I  T  I  *  R  N  S  S  F  R :   D  M  T  P  T  Q  Q  L  R  Q  L  Q  P  L  S  L  H  P  S  L  V  Q  I  L  A  *  K  C  M  W  E  M  T  L  S  I  M  S  L  P  G  R  A  T  V  L  K  L  C  N  L  M  G  *  E  I  G  S  R  P  G  L  V  V  Q  R  V  L  *  *  I  I  L  V  Q  K  C  F  N  R  H  S  L  K  V  L  I  *  C  S  I  S  K  Q  L  L  S  I  T  I  Q  Q  V  P  A  H  K  M  E  D  G  L  H  E  L  Q  H  C  L  W  E  R  I  Q  P  S  H  M  H  S  S  V  A  I  A  I  C  T  M  :  G  *  P  G  K  R  T  S  H  T  *  P  T  I  A  L  I  A  M  P  *  I  G  L  S  S  L  M  I  V  S  L  V  Q  V  P  L  T  L  V  P  Q  L  L  W  L  M  L  I  R  S  N  K  L  V  D  L  L  R  I  K  Y  P  H  Q  Q  V  A  V  L  *  Q  L  Q  W  K  Q  K  V  I  T  *  C  P  V  L  L  T  A  S  R  W  G  V  L  N  R  V  V  Q  A  S  A  F  S  P  Y  I  C  V  A  G  F  Y  F  F  L  F  S  W  *  C  V  T  L  C  C  I  H  S  R  K  H  I  Q  R  F  I  R  *  L  P  *  N  F  S  T  D  A  I  Y  L  N  F  L  L  F  E   </first_frame>
            <second_frame>  S  F  Q  S  Q  L  F  I  L  T  F  F  S  G  P  S  D  L  L  F  H  L  C  F  *  I  P  I  F  L  S  P  I  D  L  L  Q  S  I  Q  Q  S  I  G  F  N  P   : G  N  G  C  *  A  Y  K  R  T  Y  *  C  C  *  D  *  T  C  G  I  I  Y  *  *  *  R  K  D  K  K  E  E  K  E  G  I  F  F  D  D  M  E  *  F  I  *  V  Q  K  G  *  F  *  E  E  I  A  A  Y  F  Q  G  G  G  C  C  Y  C  Q  N  Q  *  A  I  P  K  L  E  K  D  D  E  A  S  H  C  T  F  C  D  F  *   : G  Y  C  S  G  L  C  Y  H  D  N  T  I  P  *  A  E  L  E  N  E  G  I  A  S  F  T  N  V  S  V  A  W  L  I  L  H  Y  I  F  S  D  W  K  F  Y  K  D  V :   *  T  *  G  P  E  N  S  R  K  T  T  S  *  K  A  S  Q  D  *  G  T  E  R  E  D  K  L  L  Y  N  A  T  A  H  S   : E  I  *  P  R  P  S  S  *  G  S  C  S  H  C  P  C  I  Q  A  W  Y  R  Y  W  L  E  S  V  C  G  R  *  H  *  A  *  C  P  Y  R  E  E  Q  R  C  *  S  C  A  I  *  W  A  E  K  *  E  A  G  Q  V  *  *  S  R  E  C  C  N  R  S  S  W  C  R  N  A  S  T  G  T  A  *  R  F  *  Y  D  A  A  S  A  N  S  C  *  A  L  Q  S  N  R  F  Q  H  T  R  W  R  M  D  C  T  N  C  S  I  A  C  G  R  G  S  N  P  V  I  C  T  H  L  W  Q  L  P  Y  A  Q  W :   V  S  Q  E  R  G  L  P  I  H  N  L  L  L  P  S  L  P  C  P  K  *  A  *  A  A  *  *  S  C  L  W  Y  K  Y  P  *  P  W  F  H  N  F  F  G  *  C  *  F  G  Q  T  S  *  W  I  Y  S  G  *  N  T  R  I  S  K  W  Q  S  C  S  S  S  S  G  N  R  R  *  *  H  S  V  Q  C  F  *  Q  L  V  D  G  E  F  *  I  E  S  C  R  R  V  L  F  L  P  I  Y  V  *  R  G  F  I  F  F  F  F  L  G  N  V  *  L  S  V  V  Y  I  V  E  N  I  F  N  D  S  Y  G  S  F  L  E  T  F  L  Q  T  Q  Y  T  S  I  F  F  C  L  R  </second_frame>
            <third_frame>   H  F  N  P  N  Y  L  F  L  P  S  S  Q  G  L  P  I  Y  C  F  T  S  V  F  E  F  Q  Y  F  F  R  Q  S  I  C  F  R  A  F  S  N  R  S  A  L  I  Q  :  E  M  A  A  E  P  T  K  E  H  I  D  V  A  E  T  E  P  V  A  S  S  T  D  N  E  E  K  T  K  K  K  K  K  K  G  F  F  S  M  I  W  N  S  L  F  R  S  K  K  D  D  F  E  K  R  L  Q  H  I  S  K  E  E  A  A  V  I  A  R  I  N  K  R  S  Q  N  W  R  R  M  T  R  H  L  I  V  L  S  V  I  F  E  :  V  I  A  V  G  Y  A  I  M  T  T  R  S  L  E  L  N  W  K  M  R  A  L  R  V  L  P  M  F  L  L  P  G  L  S  F  I  T  Y  S  A  I  G  S  F  T  R  M   : C  E  R  K  D  Q  K  T  L  E  K  L  R  A  E  R  Q  A  K  I  E  E  L  K  E  K  T  N  Y  Y  I  T  Q  Q  L  I  Q  :  R  Y  D  P  D  P  A  A  K  A  A  A  A  T  V  L  A  S  K  L  G  T  D  T  G  L  K  V  Y  V  G  D  D  T  K  H  N  V  P  T  G  K  S  N  G  V  E  V  V  Q  S  N  G  L  R  N  R  K  Q  A  R  S  S  S  P  E  S  A  V  I  D  H  P  G  A  E  M  L  Q  Q  A  Q  L  E  G  S  D  M  M  Q  H  Q  Q  T  V  V  E  H  Y  N  P  T  G  S  S  T  Q  D  G  G  W  I  A  R  I  A  A  L  L  V  G  E  D  P  T  Q  S  Y  A  L  I  C  G  N  C  H  M  H  N   : G  L  A  R  K  E  D  F  P  Y  I  T  Y  Y  C  P  H  C  H  A  L  N  R  P  K  Q  L  D  D  R  V  S  G  T  S  T  P  N  L  G  S  T  T  S  L  A  D  V  D  S  V  K  Q  V  S  G  S  T  P  D  K  I  P  A  S  A  S  G  S  P  V  A  A  P  V  E  T  E  G  D  N  I  V  S  S  A  S  N  S  *  *  M  G  S  F  E  *  S  R  A  G  E  C  F  F  S  L  Y  M  C  S  G  V  L  F  F  S  F  F  L  V  M  C  N  S  L  L  Y  T  *  *  K  T  Y  S  T  I  H  T  V  A  S  L  K  L  F  Y  R  R  N  I  P  Q  F  S  F  V  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42069" stop="41929"/>
                    <exon start="41030" stop="40752"/>
                    <exon start="39274" stop="39130"/>
                    <exon start="35530" stop="35421"/>
                    <exon start="35171" stop="34754"/>
                    <exon start="34655" stop="34387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFNPNYLFLPSSQGLPIYCFTSVFEFQYFFRQSICFRAFSNRSALIQEMAAEPTKEHIDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLELNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTSLADVDSVKQVSGSTPDKIPASASGSPVAAPVETEGDNIVSSASNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35446" e_stop="34754"/>
            <exon e_start="34655" e_stop="34509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35446" e_stop="34754" e_length="693"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34655" e_stop="34509" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35446" stop="34754"/>
              <exon start="34655" stop="34509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG : GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</gDNA_template>
            <first_frame> T  I  *  R  N  S  S  F  R  *  *  P  I  C  K  V  L  G  L  Y  K  F  H  M  L  L  T  M  S  T  V  I  K  *  S  F  L  C  *  E  I  R  R  K  K  R  T  M  K  L  H  S  E  R  L  I  *  Y  Y  I  S  H  C  F  V  L  A  S  I  V  V  N  F  Q  K  N  L  F  F  N  N  F  Q  A  S  L  L  N  L  L  C  R  D  M  T  P  T  Q  Q  L  R  Q  L  Q  P  L  S  L  H  P  S  L  V  Q  I  L  A  *  K  C  M  W  E  M  T  L  S  I  M  S  L  P  G  R  A  T  V  L  K  L  C  N  L  M  G  *  E  I  G  S  R  P  G  L  V  V  Q  R  V  L  *  *  I  I  L  V  Q  K  C  F  N  R  H  S  L  K  V  L  I  *  C  S  I  S  K  Q  L  L  S  I  T  I  Q  Q  V  P  A  H  K  M  E  D  G  L  H  E  L  Q  H  C  L  W  E  R  I  Q  P  S  H  M  H  S  S  V  A  I  A  I  C  T  M  :  G  *  P  G  K  R  T  S  H  T  *  P  T  I  A  L  I  A  M  P  *  I  G  L  S  S  L  M  I  V  S  L  V  Q  V  P  L  T  L  V  P  Q  L  L  W  L  M  L  I </first_frame>
            <second_frame>  L  Y  N  A  T  A  H  S  G  D  S  P  Y  A  R  F  W  A  Y  T  S  F  T  C  Y  *  P  *  V  L  *  S  N  N  L  S  C  V  K  K  *  E  G  K  K  E  P  *  N  C  T  L  R  D  L  F  S  I  T  F  L  T  V  L  S  L  P  L  S  S  *  I  S  K  K  T  F  F  L  T  I  S  K  H  H  C  *  I  F  C  A  E  I  *  P  R  P  S  S  *  G  S  C  S  H  C  P  C  I  Q  A  W  Y  R  Y  W  L  E  S  V  C  G  R  *  H  *  A  *  C  P  Y  R  E  E  Q  R  C  *  S  C  A  I  *  W  A  E  K  *  E  A  G  Q  V  *  *  S  R  E  C  C  N  R  S  S  W  C  R  N  A  S  T  G  T  A  *  R  F  *  Y  D  A  A  S  A  N  S  C  *  A  L  Q  S  N  R  F  Q  H  T  R  W  R  M  D  C  T  N  C  S  I  A  C  G  R  G  S  N  P  V  I  C  T  H  L  W  Q  L  P  Y  A  Q  W :   V  S  Q  E  R  G  L  P  I  H  N  L  L  L  P  S  L  P  C  P  K  *  A  *  A  A  *  *  S  C  L  W  Y  K  Y  P  *  P  W  F  H  N  F  F  G  *  C  *   </second_frame>
            <third_frame>   Y  I  T  Q  Q  L  I  Q  V  I  A  H  M  Q  G  F  G  L  I  Q  V  S  H  V  I  N  H  E  Y  C  D  Q  I  I  F  L  V  L  R  N  K  K  E  K  K  N  H  E  I  A  L  *  E  T  Y  L  V  L  H  F  S  L  F  C  P  C  L  Y  R  R  E  F  P  K  K  P  F  F  *  Q  F  P  S  I  I  V  E  S  F  V  Q  R  Y  D  P  D  P  A  A  K  A  A  A  A  T  V  L  A  S  K  L  G  T  D  T  G  L  K  V  Y  V  G  D  D  T  K  H  N  V  P  T  G  K  S  N  G  V  E  V  V  Q  S  N  G  L  R  N  R  K  Q  A  R  S  S  S  P  E  S  A  V  I  D  H  P  G  A  E  M  L  Q  Q  A  Q  L  E  G  S  D  M  M  Q  H  Q  Q  T  V  V  E  H  Y  N  P  T  G  S  S  T  Q  D  G  G  W  I  A  R  I  A  A  L  L  V  G  E  D  P  T  Q  S  Y  A  L  I  C  G  N  C  H  M  H  N   : G  L  A  R  K  E  D  F  P  Y  I  T  Y  Y  C  P  H  C  H  A  L  N  R  P  K  Q  L  D  D  R  V  S  G  T  S  T  P  N  L  G  S  T  T  S  L  A  D  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35207" stop="34754"/>
                    <exon start="34655" stop="34510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPSIIVESFVQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTSLADVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49148" PGL_stop="66313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49148" e_stop="49458"/>
            <exon e_start="63416" e_stop="63743"/>
            <exon e_start="64167" e_stop="65626"/>
            <exon e_start="65770" e_stop="66137"/>
            <exon e_start="66284" e_stop="66313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.807" e_score="0.958"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="49148" e_stop="49458" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.807">
            <gDNA_intron_boundary i_start="49459" i_stop="63415" i_length="13957"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="63416" e_stop="63743" e_length="328"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63744" i_stop="64166" i_length="423"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="64167" e_stop="65626" e_length="1460"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="65770" e_stop="66137" e_length="368"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66138" i_stop="66283" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="66284" e_stop="66313" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49148" stop="49458"/>
              <exon start="63416" stop="63743"/>
              <exon start="64167" stop="64727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64669" stop="65626"/>
              <exon start="65770" stop="66066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65399" stop="65626"/>
              <exon start="65770" stop="66137"/>
              <exon start="66284" stop="66313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTTTGAGTGTTTTTTCCTACTTTGTATTTGTTTTTGATCTGTTTCACGGACTCAAACCAAATCTTGATTCTTTGGCATTTTCTCACAACTTCCCGTCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCGAATGTTTGTCTTCCTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGAGGAAGTTTAGCTGGTGTACCACCTAGTCCTATTGAACGTAGACAGAGGCTTTCTGTATTCAC : GTCTCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAGAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGGCAGTCCAAAAGTAGATCAGGTTGGTCGTCTGGGGACAATGTTACAGGAACTGAAGATTTGAGGAAGGATAACTATCATTACAAGAGCATGTCTCCAGCTTTTGAAAGGCGGGAAAGGCGAAGCAATAGCCACTCTCCAGATAATGGTCGGGCCCAGTCTCACAG : AAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG : GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGAT : AATTACAAAAAAAATAAAATAAAATAAAAA</gDNA_template>
            <first_frame> Q  F  L  S  V  F  S  Y  F  V  F  V  F  D  L  F  H  G  L  K  P  N  L  D  S  L  A  F  S  H  N  F  P  S  T  P  R  E  S  A  E  S  R  T  D  F  *  I  M  F  S  *  F  F  E  M  G  T  *  F  S  V  F  Q  F  E  C  L  S  S  L  S  W  K  T  *  K  R  K  P  Q  N  G  G  S  L  A  G  V  P  P  S  P  I  E  R  R  Q  R  L  S  V  F  T :   S  P  N  M  L  H  E  R  T  *  I  L  L  I  F  S  I  K  G  H  Y  G  *  K  C  K  K  A  K  V  F  V  G  C  *  R  R  E  S  T  E  I  *  G  V  G  T  S  K  T  *  K  F  M  A  V  Q  K  *  I  R  L  V  V  W  G  Q  C  Y  R  N  *  R  F  E  E  G  *  L  S  L  Q  E  H  V  S  S  F  *  K  A  G  K  A  K  Q  *  P  L  S  R  *  W  S  G  P  V  S  Q  :  K  V  G  A  G  V  A  A  G  D  G  E  G  E  K  V  G  A  G  V  A  A  G  D  G  T  S  L  G  P  G  A  E  A  G  A  G  T  G  V  V  *  E  F  R  I  G  V  V  V  L  I  I  L  N  V  I  H  M  H  Q  V  I  E  E  L  A  F  I  Y  L  P  R  Y  A  E  I  L  Q  R  G  I  V  G  E  A  V  I  A  G  S  F  I  *  I  L  P  V  I  G  M  K  V  I  Q  R  T  T  C  Q  K  D  W  V  V  D  L  S  V  G  I  S  Q  G  I  M  I  V  K  V  L  G  T  N  Q  G  T  C  F  L  I  C  I  I  W  R  M  S  *  T  E  I  G  V  E  V  Q  L  L  A  G  I  L  *  K  A  T  V  A  G  V  H  H  A  D  F  L  M  M  V  P  Q  V  I  T  M  T  R  A  L  G  V  H  P  L  S  M  V  R  T  I  K  Q  P  E  P  G  N  H  F  V  S  T  L  L  Q  E  S  A  T  R  I  I  V  N  S  L  T  M  P  H  Q  E  I  M  K  L  G  P  W  M  T  L  V  S  K  Y  I  K  W  N  P  V  Q  H  L  *  *  R  N  *  R  K  D  C  K  K  P  N  Y  K  V  S  *  I  P  L  V  L  L  E  C  Y  L  Q  I  P  F  L  H  L  F  M  L  Y  M  V  R  P  I  L  R  *  G  F  *  I  T  I  I  L  Q  M  A  *  S  *  I  H  L  A  T  L  S  C  P  R  T  I  H  S  I  W  I  E  I  V  L  R  F  P  W  T  K  *  I  K  H  L  L  L  I  L  N  L  E  I  M  I  K  L  M  K  *  S  S  R  R  M  N  *  L  K  L  M  E  R  I  N  *  L  R  G  S  P  R  M  C  K  K  M  I  I  Q  E  L  *  I  C  M  E  R  L  R  R  E  A  V  T  K  M  K  R  *  C  D  Y  S  K  T  L  *  *  S  S  S  R  R  S  *  N  P  F  G  K  K  V  R  *  A  E  K  F  I  K  Q  L  L  R  R  W  L  I  R  *  L  V  R  F  K  E  N  K  S  L  R  R  K  R  R  *  S  N  I  C  P  I  Q  S  L  K  L  P  N  L  Y  R :   H  M  W  S  D  F  *  R  M  K  L  E  V  P  D  S  P  S  L  L  E  N  S  N  S  I  R  T  *  F  S  N  M  Y  W  K  V  *  L  C  *  I  S  L  F  A  E  I  T  Y  P  H  S  V  I  D  L  V  *  Q  A  V  F  C  Y  S  D  H  L  F  S  D  L  P  C  L  S  I  I  C  S  F  L  I  D  S  I  T  W  *  L  C  *  F  L  S  L  P  A  F  S  C  *  V  D  C  S  L  N  F  F  M  I  L  L  V  S  T  L  F  V  *   : *  L  Q  K  K  *  N  K  I  K  </first_frame>
            <second_frame>  N  F  *  V  F  F  P  T  L  Y  L  F  L  I  C  F  T  D  S  N  Q  I  L  I  L  W  H  F  L  T  T  S  R  L  P  P  E  N  Q  L  N  Q  E  L  I  F  R  L  C  S  L  D  S  L  K  W  E  L  D  F  Q  F  S  N  S  N  V  C  L  P  *  A  G  K  L  E  K  G  N  P  R  M  E  E  V  *  L  V  Y  H  L  V  L  L  N  V  D  R  G  F  L  Y  S   : R  L  Q  I  C  F  M  K  E  H  K  Y  C  *  Y  F  L  S  R  A  T  M  G  E  N  A  K  K  R  K  S  L  W  D  A  E  E  E  S  P  P  K  Y  E  E  W  G  P  P  K  P  E  N  S  W  Q  S  K  S  R  S  G  W  S  S  G  D  N  V  T  G  T  E  D  L  R  K  D  N  Y  H  Y  K  S  M  S  P  A  F  E  R  R  E  R  R  S  N  S  H  S  P  D  N  G  R  A  Q  S  H  R :   R  *  E  Q  E  S  Q  Q  G  T  G  K  G  R  R  *  E  Q  E  S  Q  Q  G  T  G  Q  V  *  D  Q  E  Q  K  Q  E  P  G  Q  G  *  Y  E  S  S  E  *  E  S  *  S  S  *  Y  *  T  *  S  I  C  I  R  *  *  K  S  *  P  S  Y  I  F  P  G  M  Q  K  F  C  S  G  E  L  *  E  R  Q  *  L  Q  V  H  S  S  R  F  C  Q  S  *  G  *  R  S  F  R  G  Q  L  V  R  K  I  G  *  S  T  *  A  W  A  Y  L  K  V  *  *  *  *  R  S  W  V  P  I  K  G  H  A  S  *  Y  A  S  F  G  G  *  A  E  Q  K  S  E  *  R  Y  N  Y  L  Q  E  F  C  E  K  Q  L  S  L  G  C  I  M  Q  I  F  S  *  W  C  L  R  *  L  L  *  Q  G  H  S  E  Y  I  L  *  A  W  S  G  Q  S  S  N  Q  N  R  E  I  T  L  *  V  L  C  C  R  K  V  L  Q  G  *  L  *  I  L  S  R  C  H  I  K  K  S  *  N  *  A  L  G  *  H  W  *  A  S  T  S  N  G  I  L  S  S  I  Y  D  K  E  I  R  G  R  T  A  R  S  P  T  T  K  C  L  K  S  L  W  S  F  W  N  A  T  F  K  S  H  F  F  T  C  S  C  S  I  W  S  D  Q  S  *  D  E  G  S  R  *  L  S  S  S  R  W  L  R  A  E  Y  I  W  Q  L  *  V  A  P  G  Q  F  I  L  F  G  *  R  *  Y  *  G  S  H  G  P  S  E  S  N  I  Y  C  *  S  *  T  W  K  *  *  S  N  *  *  S  E  A  A  G  E  *  I  S  *  S  *  W  K  G  *  I  S  S  G  G  V  Q  G  C  A  R  K  *  S  S  R  N  Y  E  S  A  W  K  G  *  G  G  K  R  *  Q  R  *  K  G  D  A  I  I  Q  K  R  S  N  R  V  R  Q  G  D  P  K  T  H  L  E  R  R  *  D  E  Q  R  S  S  *  N  N  C  *  E  G  G  *  *  G  D  W  C  D  S  R  R  T  S  P  *  D  A  R  E  D  R  A  I  S  V  P  F  K  A  *  N  Y  Q  T  C  T   : G  I  C  G  A  T  S  E  E  *  S  L  R  C  R  T  P  L  L  F  W  K  I  Q  I  Q  *  G  L  D  F  P  T  C  T  G  R  F  S  Y  V  R  Y  L  C  L  L  K  S  H  I  L  I  V  *  *  I  W  F  S  K  L  F  S  V  I  P  T  I  Y  F  P  I  Y  H  V  *  A  L  Y  V  P  F  L  *  I  Q  S  H  G  S  C  A  D  F  S  V  S  L  R  F  L  V  E  S  I  V  V  L  T  S  L  *  F  Y  *  *  V  P  C  L  S  D  :  N  Y  K  K  N  K  I  K  *  K </second_frame>
            <third_frame>   I  F  E  C  F  F  L  L  C  I  C  F  *  S  V  S  R  T  Q  T  K  S  *  F  F  G  I  F  S  Q  L  P  V  Y  P  Q  R  I  S  *  I  K  N  *  F  L  D  Y  V  L  L  I  L  *  N  G  N  L  I  F  S  F  P  I  R  M  F  V  F  L  K  L  E  N  L  K  K  E  T  P  E  W  R  K  F  S  W  C  T  T  *  S  Y  *  T  *  T  E  A  F  C  I  H  :  V  S  K  Y  A  S  *  K  N  I  N  I  A  D  I  F  Y  Q  G  P  L  W  V  K  M  Q  K  S  E  S  L  C  G  M  L  K  K  R  V  H  R  N  M  R  S  G  D  L  Q  N  L  K  I  H  G  S  P  K  V  D  Q  V  G  R  L  G  T  M  L  Q  E  L  K  I  *  G  R  I  T  I  I  T  R  A  C  L  Q  L  L  K  G  G  K  G  E  A  I  A  T  L  Q  I  M  V  G  P  S  L  T   : E  G  R  S  R  S  R  S  R  G  R  G  R  G  E  G  R  S  R  S  R  S  R  G  R  D  K  F  R  T  R  S  R  S  R  S  R  D  R  G  S  M  R  V  Q  N  R  S  R  S  P  H  N  T  K  R  D  P  Y  A  S  G  D  R  R  A  S  L  H  I  S  S  Q  V  C  R  N  F  A  A  G  N  C  R  R  G  S  D  C  R  F  I  H  L  D  S  A  S  H  R  D  E  G  H  S  E  D  N  L  S  E  R  L  G  S  R  P  E  R  G  H  I  S  R  Y  N  D  S  E  G  P  G  Y  Q  S  R  D  M  L  P  D  M  H  H  L  E  D  E  L  N  R  N  R  S  R  G  T  I  T  C  R  N  F  V  K  S  N  C  R  W  G  A  S  C  R  F  S  H  D  G  A  S  G  D  Y  Y  D  K  G  T  R  S  T  S  F  E  H  G  Q  D  N  Q  A  T  R  T  G  K  S  L  C  E  Y  F  A  A  G  K  C  Y  K  D  N  C  E  F  S  H  D  A  T  S  R  N  H  E  I  R  P  L  D  D  I  G  E  Q  V  H  Q  M  E  S  C  P  A  S  M  I  K  K  L  E  E  G  L  Q  E  A  Q  L  Q  S  V  L  N  P  S  G  P  S  G  M  L  P  S  N  P  I  S  S  L  V  H  A  L  Y  G  Q  T  N  P  E  M  R  V  L  D  N  Y  H  P  P  D  G  L  E  L  N  T  S  G  N  F  K  L  P  P  D  N  S  F  Y  L  D  R  D  S  I  K  V  P  M  D  Q  V  N  Q  T  S  T  V  D  P  E  L  G  N  N  D  Q  I  D  E  V  K  Q  Q  E  N  E  L  V  E  V  D  G  K  D  K  L  A  P  G  E  S  K  D  V  Q  E  N  D  H  P  G  T  M  N  L  H  G  K  V  E  E  G  S  G  N  K  D  E  K  V  M  R  L  F  K  N  A  L  I  E  F  V  K  E  I  L  K  P  I  W  K  E  G  K  M  S  R  E  V  H  K  T  I  V  K  K  V  V  D  K  V  T  G  A  I  Q  G  E  Q  V  P  K  T  Q  E  K  I  E  Q  Y  L  S  H  S  K  P  K  I  T  K  L  V  Q  :  A  Y  V  E  R  L  L  K  N  E  A  *  G  A  G  L  P  F  S  S  G  K  F  K  F  N  K  D  L  I  F  Q  H  V  L  E  G  L  V  M  L  D  I  F  V  C  *  N  H  I  S  S  *  C  D  R  F  G  L  A  S  C  F  L  L  F  R  P  F  I  F  R  F  T  M  F  E  H  Y  M  F  L  S  Y  R  F  N  H  M  V  V  V  L  I  S  Q  S  P  C  V  F  L  L  S  R  L  *  S  *  L  L  Y  D  F  I  S  E  Y  L  V  C  L  I :   I  T  K  K  I  K  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63641" stop="63743"/>
                    <exon start="64167" stop="65626"/>
                    <exon start="65770" stop="65805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRITIITRACLQLLKGGKGEAIATLQIMVGPSLTEGRSRSRSRGRGRGEGRSRSRSRGRDKFRTRSRSRSRDRGSMRVQNRSRSPHNTKRDPYASGDRRASLHISSQVCRNFAAGNCRRGSDCRFIHLDSASHRDEGHSEDNLSERLGSRPERGHISRYNDSEGPGYQSRDMLPDMHHLEDELNRNRSRGTITCRNFVKSNCRWGASCRFSHDGASGDYYDKGTRSTSFEHGQDNQATRTGKSLCEYFAAGKCYKDNCEFSHDATSRNHEIRPLDDIGEQVHQMESCPASMIKKLEEGLQEAQLQSVLNPSGPSGMLPSNPISSLVHALYGQTNPEMRVLDNYHPPDGLELNTSGNFKLPPDNSFYLDRDSIKVPMDQVNQTSTVDPELGNNDQIDEVKQQENELVEVDGKDKLAPGESKDVQENDHPGTMNLHGKVEEGSGNKDEKVMRLFKNALIEFVKEILKPIWKEGKMSREVHKTIVKKVVDKVTGAIQGEQVPKTQEKIEQYLSHSKPKITKLVQAYVERLLKNEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49158" stop="49361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFPTLYLFLICFTDSNQILILWHFLTTSRLPPENQLNQELIFRLCSLDSLKWELDFQFSNSNVCLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63437" stop="63640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNINIADIFYQGPLWVKMQKSESLCGMLKKRVHRNMRSGDLQNLKIHGSPKVDQVGRLGTMLQELKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="70392" PGL_stop="69933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70392" e_stop="69933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="70392" e_stop="69933" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70392" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACTATACACACAAAAAAAATAGTTTAATTTTTAATTTTTTAAACTAAGAAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTACAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTTAATAATTTTTTTAAAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCTACTTTTATAACGAGGGTATATCAGCTCCAAATGATAAAGTTGAGGGGTATATCAGACCCTTTGATCTATTCCAAATAATATAATTG</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  F  L  I  F  *  T  K  K  *  K  K  T  T  K  *  E  *  E  I  Q  I  I  T  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  I  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  L  L  L  *  R  G  Y  I  S  S  K  *  *  S  *  G  V  Y  Q  T  L  *  S  I  P  N  N  I  I  </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  L  Y  T  Q  K  K  *  F  N  F  *  F  F  K  L  R  N  E  R  K  Q  Q  N  K  N  K  K  F  K  *  L  Q  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  L  I  I  F  L  K  K  L  *  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  Y  F  Y  N  E  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  D  L  F  Q  I  I  *  L </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  Y  T  H  K  K  N  S  L  I  F  N  F  L  N  *  E  M  K  E  N  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  *  *  F  F  *  K  N  Y  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  V  Y  Q  L  Q  M  I  K  L  R  G  I  S  D  P  L  I  Y  S  K  *  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="78638" PGL_stop="79601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78638" e_stop="79601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="78638" e_stop="79601" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78638" stop="79601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGTCTAAACAGAAGGCTGCATTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</gDNA_template>
            <first_frame> C  N  W  N  V  G  K  L  Q  E  F  A  S  D  V  A  H  R  T  W  W  K  V  H  D  A  M  P  D  N  L  H  K  Y  C  L  L  R  S  K  Q  K  A  A  L  E  W  D  R  R  E  A  E  K  A  N  Y  S  D  G  H  W  K  I  K  I  K  D  P  R  L  E  T  C  F  E  E  F  C  F  W  E  S  M  L  W  H  W  G  E  T  N  W  T  D  N  A  T  S  S  P  T  P  P  M  V  N  T  A  S  L  S  S  L  *  L  G  G  S  V  A  I  P  R  S  S  V  S  N  T  E  S  Q  L  E  C  Q  P  M  A  I  S  T  H  G  V  R  T  C  P  T  L  E  Y  S  P  L  C  S  C  V  A  S  I  A  S  H  L  F  L  F  P  I  R  L  F  S  L  V  L  K  R  C  S  F  L  N  C  P  F  T  *  V  I  R  G  A  L  E  Q  T  I  K  L  S  P  Y  G  F  V  L  W  E  H  P  L  M  L  E  S  G  *  A  D  Y  I  K  P  L  G  M  W  P  F  L  R  P  C  V  N  M  *  C  F  A  H  L  V  V  L  F  L  Y  N  S  G  K  G  I  V  L  K  F  S  K  M  L  Q  R  G  V  T  V  S  L  R  N  L  F  V  L  R  H  H  I  T  V  V  V  S  V  Q  T  K  Q  T  Y  T  I  Y  V  C  C  *  L  *  K  P  N  F  S  S  K  E  V  W  M  N  H  L  N  </first_frame>
            <second_frame>  A  T  G  M  W  V  S  C  R  S  L  Q  V  M  W  H  T  G  R  G  G  R  S  M  M  P  C  Q  I  T  Y  I  N  I  V  C  L  G  L  N  R  R  L  H  *  S  G  I  E  E  K  L  R  K  L  T  I  Q  M  V  I  G  R  S  K  *  K  T  H  V  W  K  L  V  L  K  N  F  A  S  G  K  A  C  Y  G  T  G  G  K  Q  T  G  Q  I  M  P  P  L  H  Q  H  L  P  W  S  I  L  L  H  F  L  L  C  N  *  E  V  L  L  L  Y  L  A  R  L  *  V  I  R  S  H  N  L  N  V  N  Q  W  P  L  V  R  M  V  F  A  L  A  L  P  L  N  I  V  H  S  A  A  V  L  L  Q  L  L  L  I  F  S  C  F  L  Y  D  C  F  L  L  S  S  R  D  V  L  F  L  I  V  L  L  L  K  L  *  G  E  H  W  S  K  Q  L  S  C  L  R  M  D  S  F  C  G  N  T  P  *  C  L  S  Q  G  R  Q  T  T  L  N  P  L  E  C  G  P  S  S  D  H  A  *  T  C  D  V  S  R  T  W  L  S  F  F  F  I  I  V  V  K  V  L  Y  *  S  S  A  K  C  C  N  E  E  S  L  S  H  *  E  I  C  L  F  *  G  T  I  L  L  L  *  *  V  Y  K  R  S  R  L  T  L  F  M  Y  V  V  D  C  R  N  P  I  F  H  Q  R  R  F  G  *  I  T  *  M </second_frame>
            <third_frame>   Q  L  E  C  G  *  V  A  G  V  C  K  *  C  G  T  Q  D  V  V  E  G  P  *  C  H  A  R  *  L  T  *  I  L  F  A  *  V  *  T  E  G  C  I  R  V  G  S  K  R  S  *  E  S  *  L  F  R  W  S  L  E  D  Q  N  K  R  P  T  F  G  N  L  F  *  R  I  L  L  L  G  K  H  V  M  A  L  G  G  N  K  L  D  R  *  C  H  L  F  T  N  T  S  H  G  Q  Y  C  F  T  F  F  F  V  T  R  R  F  C  C  Y  T  S  L  V  C  K  *  Y  G  V  T  T  *  M  S  T  N  G  H  *  Y  A  W  C  S  H  L  P  Y  P  *  I  *  S  T  L  Q  L  C  C  F  N  C  F  S  S  F  L  V  S  Y  T  T  V  F  S  C  P  Q  E  M  F  F  S  *  L  S  F  Y  L  S  Y  K  G  S  I  G  A  N  N  *  V  V  S  V  W  I  R  S  V  G  T  P  L  D  A  *  V  R  V  G  R  L  H  *  T  P  W  N  V  A  L  P  Q  T  M  R  E  H  V  M  F  R  A  P  G  C  P  F  S  L  *  *  W  *  R  Y  C  I  E  V  Q  Q  N  A  A  T  R  S  H  C  L  I  E  K  S  V  C  F  E  A  P  Y  Y  C  C  S  E  C  T  N  E  A  D  L  H  Y  L  C  M  L  L  I  V  E  T  Q  F  F  I  K  G  G  L  D  E  S  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78638" stop="78982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNWNVGKLQEFASDVAHRTWWKVHDAMPDNLHKYCLLRSKQKAALEWDRREAEKANYSDGHWKIKIKDPRLETCFEEFCFWESMLWHWGETNWTDNATSSPTPPMVNTASLSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78983" stop="79213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGGSVAIPRSSVSNTESQLECQPMAISTHGVRTCPTLEYSPLCSCVASIASHLFLFPIRLFSLVLKRCSFLNCPFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79408" stop="79599"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYCIEVQQNAATRSHCLIEKSVCFEAPYYCCSECTNEADLHYLCMLLIVETQFFIKGGLDESLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="92117" PGL_stop="92618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92117" e_stop="92618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="92117" e_stop="92618" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92117" stop="92618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATGACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTTCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGGTAGTAGAACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTCAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  L  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  P  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  P  L  L  W  L  A  M  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  G  S  R  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  Q  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  R  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  L  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  L  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  F  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  V  V  E  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  T  *  *  K  N  I  F  Q  G  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  D  P  F  K  S  S  E  I  S  S  I  L  S  S  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  N  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  S  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92146" stop="92376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQGYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDDPFKSSEISSILSSMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="112350" PGL_stop="113756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112350" e_stop="112887"/>
            <exon e_start="113538" e_stop="113645"/>
            <exon e_start="113745" e_stop="113756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.887" acc_prob="0.948" e_score="0.972"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="112350" e_stop="112887" e_length="538"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="113538" e_stop="113645" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.948">
            <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.917">
            <gDNA_exon_boundary e_start="113745" e_stop="113756" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112350" stop="112887"/>
              <exon start="113538" stop="113645"/>
              <exon start="113745" stop="113756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112399" stop="112832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAG : GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAG : CATCAAATCTCC</gDNA_template>
            <first_frame> F  L  T  S  S  *  H  H  R  T  T  H  Q  P  Q  E  P  N  T  C  I  L  S  F  Y  P  T  S  Y  L  F  S  F  L  V  N  N  Y  L  Y  I  V  K  N  S  F  L  F  I  K  F  P  E  F  T  C  F  S  Y  P  L  F  L  F  F  L  *  R  F  D  F  I  F  N  N  R  G  C  E  *  A  *  F  L  K  C  F  R  E  K  E  G  K  D  *  I  F  M  R  F  S  E  M  G  V  W  W  F  C  G  L  V  I  L  G  L  V  I  G  G  K  G  Y  P  E  K  D  L  V  K  A  L  P  G  Q  P  K  V  G  F  R  Q  Y  A  G  Y  V  D  V  D  V  K  A  G  R  S  L  F  Y  Y  F  V  E  A  E  V  K  P  D  E  K  P  L  T  L  W  L  N  G   : G  P  G  C  S  S  I  G  G  G  A  F  T  E  L  G  P  F  F  P  T  G  D  G  R  G  L  R  R  N  S  K  S  W  N  K   : A  S  N  L  </first_frame>
            <second_frame>  F  *  P  H  H  N  T  T  A  Q  L  T  N  P  K  N  Q  I  P  A  Y  S  H  S  I  L  L  L  T  Y  L  V  F  L  L  I  I  I  Y  I  *  *  K  I  A  F  C  L  *  S  F  R  N  S  R  A  F  L  I  P  F  S  S  F  S  Y  K  D  L  I  L  F  L  I  T  E  D  V  N  E  P  N  F  *  S  V  L  E  K  K  R  V  K  I  E  S  L  *  G  L  V  R  W  V  C  G  G  F  V  D  W  S  F  W  V  W  *  L  E  E  K  G  I  Q  R  R  I  *  *  R  H  C  L  D  N  L  R  L  V  L  G  N  M  Q  G  M  *  M  W  M  *  K  L  G  G  V  C  F  T  T  L  L  K  L  R  *  N  L  M  R  N  L  *  L  F  G  S  M  E  :  G  Q  V  A  H  Q  L  V  E  V  L  L  Q  S  W  D  H  S  F  P  Q  V  T  V  E  V  F  E  E  I  Q  N  H  G  I  K  :  H  Q  I  S </second_frame>
            <third_frame>   F  N  L  I  I  T  P  P  H  N  S  P  T  P  R  T  K  Y  L  H  T  L  I  L  S  Y  F  L  P  I  *  F  S  C  *  *  L  S  I  Y  S  K  K  *  L  S  V  Y  K  V  S  G  I  H  V  L  F  L  S  P  F  P  L  F  L  I  K  I  *  F  Y  F  *  *  Q  R  M  *  M  S  L  I  F  E  V  F  *  R  K  R  G  *  R  L  N  L  Y  E  V  *  *  D  G  C  V  V  V  L  W  I  G  H  F  G  F  G  N  W  R  K  R  V  S  R  E  G  F  S  E  G  I  A  W  T  T  *  G  W  F  *  A  I  C  R  V  C  R  C  G  C  E  S  W  E  E  F  V  L  L  L  C  *  S  *  G  E  T  *  *  E  T  S  N  S  L  A  Q  W  R :   A  R  L  L  I  N  W  W  R  C  F  Y  R  V  G  T  I  L  S  H  R  *  R  *  R  S  S  K  K  F  K  I  M  E  *  S :   I  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112635" stop="112887"/>
                    <exon start="113538" stop="113645"/>
                    <exon start="113745" stop="113755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFMRFSEMGVWWFCGLVILGLVIGGKGYPEKDLVKALPGQPKVGFRQYAGYVDVDVKAGRSLFYYFVEAEVKPDEKPLTLWLNGGPGCSSIGGGAFTELGPFFPTGDGRGLRRNSKSWNKASNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 34256 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2141 bytes was the average size of a spliced alignment
$ 14952 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1869 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:27:10
-->
