<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 04:03:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E369678" ref_strand="-" ref_description="SGN-E369678 [TUS-25-N18]">
      <seq>gctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="5332" stop="2709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5032" g_stop="4953" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3563" g_stop="3434" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="359" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3349" g_stop="3006" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="703" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E369678" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369678" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5032" e_stop="4953"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3434"/>
          <exon e_start="3349" e_stop="3006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</genome_strand>
        <mrna_strand>GCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E220147" ref_strand="-" ref_description="SGN-E220147 [cLEL-12-O23]">
      <seq>taactctatagtcgaatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="3830" stop="2709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3530" g_stop="3434" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3349" g_stop="3017" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="430" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="447"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E220147" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3530" e_stop="3434"/>
          <exon e_start="3349" e_stop="3017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</genome_strand>
        <mrna_strand>TAACTCTATAGTCGAATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E236057" ref_strand="+" ref_description="SGN-E236057 [cLED-16-N3]">
      <seq>gtaaacttgggctaggaaggggcagttagcagattttttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacatttactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="4425" stop="2931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4125" g_stop="4089" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4088" i_stop="3991" i_length="98">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="186" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3563" g_stop="3434" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="316" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3349" g_stop="3231" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="436" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E236057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4125" e_stop="4089"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3434"/>
          <exon e_start="3349" e_stop="3231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACA-TTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTT</genome_strand>
        <mrna_strand>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTT..................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E214148" ref_strand="+" ref_description="SGN-E214148 [cLEC-80-P12]">
      <seq>ctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtttgtccaaccctatccacaattaaatctaaaaaaagctgtctcgtgactctttctgctaaggactcctgtgcgacaaatcagatgcagttgatggaaagcttacctgatccttcttttcaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggncttcaaactcatcagtgatggctgattctttgggcttggagtcaccttcacgattttcgagacttactcagcccaccatgattgatgagaacttgatttctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="5710" stop="2994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5410" g_stop="4953" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="607" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3563" g_stop="3434" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="736" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.814" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3349" g_stop="3294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="790" r_length="54" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E214148" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5410" e_stop="4953"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3434"/>
          <exon e_start="3349" e_stop="3294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGG</genome_strand>
        <mrna_strand>CTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGNCTTCAAACTCATCAGTGATGGCTGATTCTTTGGGCTTGGAGTCACCTT-CACG....................................................................................ATTTTCGAGAC-TTACTCAGCCCACC-ATGATTGATGAGAACTTGATTTCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E261699" ref_strand="+" ref_description="SGN-E261699 [cLEG-61-B5]">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggaatagcttgtatcggnttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8173" stop="3540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7873" g_stop="7620" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="4953" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="787" r_length="151" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3563" g_stop="3554" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="797" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E261699" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7873" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="4953"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGG-ATAGCTTGTATCGG-TTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGAATAGCTTGTATCGGNTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E369679" ref_strand="+" ref_description="SGN-E369679 [TUS-25-N18]">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8173" stop="3624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7873" g_stop="7620" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="4953" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3924" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="703" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E369679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7873" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="4953"/>
          <exon e_start="3990" e_stop="3924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E273352" ref_strand="+" ref_description="SGN-E273352 [cLEN-3-J13]">
      <seq>cagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacgggtataaaatctcaatgaaaactaatatgcatttttgatattgtttggtgatgagtttcatcaaagtttgttttaagtgagtgatttgactaaacaaatttggcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8027" stop="4545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7727" g_stop="7620" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="271" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="4845" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="598" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E273352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7727" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="4845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</genome_strand>
        <mrna_strand>CAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAAGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E301648" ref_strand="+" ref_description="SGN-E301648 [cLEW-23-C16]">
      <seq>ctggaggtggattgaggtcacatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcatatttcaagatagagcccataacgaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtgattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8173" stop="4697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7873" g_stop="7620" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="4997" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="592" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E301648" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7873" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="4997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTG</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCACATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCATATTTCAAGATAGAGCCCATAACGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTGATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E255283" ref_strand="+" ref_description="SGN-E255283 [cLEG-30-C9]">
      <seq>cacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8122" stop="4769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7822" g_stop="7620" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="366" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5069" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="469" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E255283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7822" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="5069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAA</genome_strand>
        <mrna_strand>CACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E318635" ref_strand="+" ref_description="SGN-E318635 [cTOB-9-B6]">
      <seq>gatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8000" stop="4790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7700" g_stop="7620" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5295" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="345" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5294" i_stop="5172" i_length="123">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5090" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="427" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E318635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7700" e_stop="7620"/>
          <exon e_start="5558" e_stop="5295"/>
          <exon e_start="5171" e_stop="5090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</genome_strand>
        <mrna_strand>GATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG...........................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E295033" ref_strand="+" ref_description="SGN-E295033 [cLET-40-G19]">
      <seq>aggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagcttcagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcgatcactggatctcaagctctcacatccacaggtattcatcagcacaagctagttgatggatctgatattgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtggctggtatacgaacacatgaaaatgtggtggacaagctacttgaacgtgtctgtaattaagcatgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8002" stop="4800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7702" g_stop="7620" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5295" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="347" r_length="264" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5294" i_stop="5172" i_length="123">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5100" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="420" r_length="73" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E295033" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7702" e_stop="7620"/>
          <exon e_start="5558" e_stop="5295"/>
          <exon e_start="5171" e_stop="5100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGT-TCTGTAATTAAGCATGAAAAC</genome_strand>
        <mrna_strand>AGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTTCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCGATCACTGGATCTCAAGCTCTCACATCCACAGGTATTCATCAGCACAAGCTAGTTGATGGATCTGATATTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG...........................................................................................................................GTGGCTGGTATACGAACACATGAAAATGTGGTGGACAAGCTACTTGAACGTGTCTGTAATTAAGCATGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E252288" ref_strand="+" ref_description="SGN-E252288 [cLEG-12-H9]">
      <seq>actttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8384" stop="5003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8084" g_stop="8057" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7956" g_stop="7620" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="365" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5558" g_stop="5303" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="621" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E252288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8084" e_stop="8057"/>
          <exon e_start="7956" e_stop="7620"/>
          <exon e_start="5558" e_stop="5303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATC</genome_strand>
        <mrna_strand>ACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E200964" ref_strand="+" ref_description="SGN-E200964 [cLEC-5-G15]">
      <seq>ttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8412" stop="5158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8112" g_stop="8057" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7956" g_stop="7620" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5558" g_stop="5458" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="494" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E200964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8112" e_stop="8057"/>
          <exon e_start="7956" e_stop="7620"/>
          <exon e_start="5558" e_stop="5458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAG</genome_strand>
        <mrna_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E335551" ref_strand="+" ref_description="SGN-E335551 [cTOE-2-J9]">
      <seq>tctcgagtttttttttttttttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatctttggttttcttgatagtaatcatgaggataaaaagtagtaccgagctcttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcngaaagttgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="9018" stop="7738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8718" g_stop="8057" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7956" g_stop="7942" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="681" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E335551" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8718" e_stop="8057"/>
          <exon e_start="7956" e_stop="7942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCT-GTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATC-TTGGTTTTCTTGATAGTAATCATGAGGAT-AAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG-GTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAAC</genome_strand>
        <mrna_strand>TCTCGAGTTTTTTTTTTTTTTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTTGGTTTTCTTGATAGTAATCATGAGGATAAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCNGA....................................................................................................AAGTTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E214143" ref_strand="+" ref_description="SGN-E214143 [cLEC-80-N10]">
      <seq>caaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatcttggttttcttgatagtaatcatgaggataaaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="9124" stop="7823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8824" g_stop="8123" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E214143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8824" e_stop="8123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAG</genome_strand>
        <mrna_strand>CAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E317991" ref_strand="+" ref_description="SGN-E317991 [cTOA-30-L11]">
      <seq>acaagtaattttggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttnggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="9440" stop="8287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9140" g_stop="8587" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E317991" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9140" e_stop="8587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTT-GGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATAT</genome_strand>
        <mrna_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTNGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E317878" ref_strand="+" ref_description="SGN-E317878 [cTOA-30-L12]">
      <seq>ttgtggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctagcggtggaaataatcttaccttaatccaaactatgatgatttcactttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="9432" stop="8293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9132" g_stop="8593" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E317878" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9132" e_stop="8593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGA</genome_strand>
        <mrna_strand>TTGTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAGCGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCACTTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E248186" ref_strand="+" ref_description="SGN-E248186 [cLEF-55-G22]">
      <seq>gtcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaagaaactatgttgaatatttaaatgaaaatgagataaaggatgcatggcttgatagtgttgatactgagaaaacatattctgggaagaaagctatcaagatatcaaatgaagatgagattcaagaccttacatcagaacaactaggaaagatgaagaggcgaattgctgatgtgctcgaaccaggagaaacagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="17394" stop="15201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17095" g_stop="16980" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16979" i_stop="15859" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15858" g_stop="15733" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="242" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15732" i_stop="15656" i_length="77">
            <donor d_prob="0.812" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15655" g_stop="15503" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="395" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E248186" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17095" e_stop="16980"/>
          <exon e_start="15858" e_stop="15733"/>
          <exon e_start="15655" e_stop="15503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</genome_strand>
        <mrna_strand>GTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAAGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E725632" ref_strand="+" ref_description="SGN-E725632 [LA04BE07]">
      <seq>accgctctctcttcaatttgccccttcattttttttcctttctgaatccttcatatcaattgccgattacgccatggaagaaggttcatcgcgacgtgccaaacgtcccttcgttgaggacgatgactccaataaagctccagagcagaagcgtgtaaggttcccaaagggtaagaaggcaaagcagggcgataccacgattgatgggtgtgaagataaacctagtgggcggacagatcctcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaggaaactatgttgaatatttaaatgaaaatgagantaaggatgcatggcttgatagtgttgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="19440" stop="15328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19140" g_stop="18997" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18996" i_stop="17191" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17190" g_stop="16980" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="355" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16979" i_stop="15859" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15858" g_stop="15733" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15732" i_stop="15656" i_length="77">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15655" g_stop="15628" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="509" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E725632" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19140" e_stop="18997"/>
          <exon e_start="17190" e_stop="16980"/>
          <exon e_start="15858" e_stop="15733"/>
          <exon e_start="15655" e_stop="15628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGAGTAACTATTTCCTTCCTTCTTTCTTTTTATTTTTTATTTTTGAAAAATTTCATGTGATTTTGTGCCCTAATTTATTCTGAACATACTTAGGGATTCTGCACAGATGAAAGCTCATATTCATTTGTTATATTGATTTCGGAATATAAAATTTGAGCTGTAAGTTTGTGATTTCTTAGTAAATAATATTTTGTATATGTTTGAAACATAGTGGTGAAACCCCAAGGGTGTGGCTTAGTGATTAATGAAGTGGTTGAGAATTCTGAGGTCTTATAAAACTCAGGGAAGACAACAAAGTTATTTGGTGGGAGGTGGGACGTATCCAATGTATTTGGATACCAAGGTCATTAAAATTAACAAAAAACTTCTCAAAGGGTGTGGCTTAGTGGTCAAGGGAGGTGGGTTGAGCATCATGAGGTCTAATGTTCAATTTCTAGTAGAGACAAAAATGCTAGATGATTTTTTTCTATTTGTCCTAGTTTTGGTGGACAGAGTTACCTGATAGTTGTTAATGGTGAGAGGTGGAATTAGTTGAGGTGTGGGAAAACTGGCGTGAACACCACAATCATAATAAAAACATAATGCGAAAGGAAACCAATTTATTTTACCATTGAAATTTAATGACATTGATTTCATAAAAAAGTGAATAAGGAAGGGTGTGATCTAGTGGTTAATGAAGTGAGTTGAGAACCATGAGGTCTAAGGTTCAAATTCCAACATAGAGAAGAAAAGTGATTTCTTTCTACCTGTCCTAGCCTTGAGGATAGAGTTACTTTATAGCTGTTTTGGTGGGGAGCGACAGATATCTATGTAATTAGTTAAGGTGCGCATAAGCTGGTCTAGTAACTACAGTTGTCTAAAAAACGAAAGAAGTGAACTAGGGGGAGTATTTTGTATCAATAGAAAGATAAAAATAGATAAATAAGTAAGGAAGCTCATTTTTGTTTTTATAACTCAATTAATTCTATCCTATGGGATCTCTACTACCTCCCATCCACATAGATATCACTTTACTGTGTCAATTGAGGCTTAAATAGATAGGGAGAATACACATAGTATTTTTTGCTTCTGCTGGGATTGATTTATTATGTCATTATTGTAAGAATTTTAGGAGCTTCCCAGAGGAGTTCAGGAGTATGTACTTGGATTTGCTTTCTTTCAGCTGCTATCTATTTTTGTTATTCTGCAAATGCGCCCAGATTCTATTAGCTTGTTTTTTCCTAATCTGAATTACCGTTGATTTCATATATGATGTGAACCTGGAGCAAAAATCTAGTGGGAATGGGTGGATTGTGTATTCTTAGTACCTAGAAAATGTCTAATAAAGAAGGGTGTGTTTGGCCTTGAGAGAACTATGCAAGAAAATACTTTATTTGTTGGAGATTTAAGGAATTATACAGTGACTATGCCTCATGCCCAAACTAATTGGATTAGTTATATGTAATCTCTATATCTATTTACTCTAACTGTGATCATTTCATTCCAGTGCTCAATAGTTTGTCTTTGAAGATAAAGTAGACTGCTTTCTTTTTCAGATTAGAGGTTGTATTTTGTTGTTGAGACTGTCATGAGTTTAGTACGAGAAAAAATAGATCTTTTTTACCTACTGTTATTTTCCTTGTAAAGATAATGTGTTTCATGAGACAGCAATAGCAAGTAATACAACTTCAAATAGCGTTTTTTTTTTCCATGTGACGTCTGCCATGCTCTATGACAACCTCATTTGTTGGGTTCAAAATAGTTTCATTTATGATGCTGGATTTTAAGGATGTTTGCATTGACATGTTGCTTTCTTCCTCAACATCACAGGCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTG</genome_strand>
        <mrna_strand>ACCGCTCTCTCTTCAATTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGANTAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E369657" ref_strand="-" ref_description="SGN-E369657 [TUS-25-J14]">
      <seq>gcatttccctgaaaaagtttatgagtctaaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtttcatagctgcattgtgcatagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="44033" stop="42491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43733" g_stop="43688" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="169" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43325" g_stop="42803" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="692" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="710"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E369657" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369657" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43733" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="42803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</genome_strand>
        <mrna_strand>GCATTTCCCTGAAAAAGTTTATGAGTCTAAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E713762" ref_strand="+" ref_description="SGN-E713762 [FB09CD01]">
      <seq>cttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="43887" stop="42518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43587" g_stop="43479" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43325" g_stop="42818" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="617" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E713762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43587" e_stop="43479"/>
          <exon e_start="43325" e_stop="42818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTT</genome_strand>
        <mrna_strand>CTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E546310" ref_strand="-" ref_description="SGN-E546310 [TUS-69-J19]">
      <seq>agagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagcttacgagtctgaagagaatttgcgcaagtgtgctgagtctgccttggaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaacaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctggctgaccaaagatgaactgttggaatactttcctgagcaagctgaattcctgaacaagatgatcatcagctgatgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatggcttggactgctggagacagatttttatgtctcgacagtctgactagcgtgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaagaactctgaagtagtgatgaattcagtatgaatatgcttttgtagatgcacgatttcatctcgtgtcgtaaaataaacagaacanaattacatgttgcagccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45092" stop="42536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44792" g_stop="44754" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="238" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="361" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43325" g_stop="42833" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="853" r_length="492" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E546310" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546310" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44792" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="42833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACA-AATTACATGTTGCAGCCTTAACGA</genome_strand>
        <mrna_strand>AGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGCTTACGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTGGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAACAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGCTGACCAAAGATGAACTGTTGGAATACTTTCCTGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGATGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAAT-GGCTTGGACTGCTGGAGACAGATTTTTATGTCTCGACAGTCTGACTAGCGTGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAGAACTCTGAAGTAGTGATGAA-TTCAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGTGTCGTAAAATAAACAGAACANAATTACATGTTGCAGCCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E353373" ref_strand="+" ref_description="SGN-E353373 [cTOS-15-M18]">
      <seq>agaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagcctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="43913" stop="42536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43701" g_stop="43688" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="137" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43325" g_stop="42838" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="625" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E353373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43701" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="42838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTT</genome_strand>
        <mrna_strand>AGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E540533" ref_strand="-" ref_description="SGN-E540533 [TUS-60-N19]">
      <seq>tcaagaattttgtttcgttgagggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaagttgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45119" stop="42621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="276" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="399" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43325" g_stop="42910" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="815" r_length="416" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E540533" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="42910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</genome_strand>
        <mrna_strand>GTTTCGTTGAGGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGTTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E234972" ref_strand="-" ref_description="SGN-E234972 [cLEL-6-A23]">
      <seq>tgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="43495" stop="42595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43195" g_stop="42910" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="315"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E234972" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234972" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43195" e_stop="42910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</genome_strand>
        <mrna_strand>TGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E540536" ref_strand="+" ref_description="SGN-E540536 [TUS-60-N19]">
      <seq>tttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45824" stop="42798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45524" g_stop="45363" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="427" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="550" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43098" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="777" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E540536" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45524" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCA</genome_strand>
        <mrna_strand>TTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTC-AACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E369658" ref_strand="+" ref_description="SGN-E369658 [TUS-25-J14]">
      <seq>aaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45747" stop="42822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45447" g_stop="45363" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="226" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="350" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="473" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43122" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="677" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E369658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45447" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAA</genome_strand>
        <mrna_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E213384" ref_strand="+" ref_description="SGN-E213384 [cLEC-71-C20]">
      <seq>aaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtgacaaagatgaattgttggaatactttcctgagcaagctgaattcctgaacaagatgatcatcagctgatgtttgtttctgctcaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="42861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="160" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="226" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="301" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="425" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="548" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43161" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="712" r_length="164" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E213384" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGA-CAAAGATGAATTGTTGGAATACTTTCCTGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGATGTTTGTTTCTGCTCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E267684" ref_strand="+" ref_description="SGN-E267684 [cLEI-12-A24]">
      <seq>caaaatcgatcctactgtatgtgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtgacaaaagatgaattgttggaatacttttcctgagcaagctgaattcctgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45701" stop="42898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45401" g_stop="45363" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="105" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="180" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="304" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="427" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43198" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="556" r_length="129" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E267684" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45401" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC-TTTCCCGAGCAAGCTGAATTCCTGAACAA</genome_strand>
        <mrna_strand>CAAAATCGATCCTACTGTATGTGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGACAAAAGATGAATTGTTGGAATACTTTTCCTGAGCAAGCTGAATTCCTGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E248848" ref_strand="+" ref_description="SGN-E248848 [cLEF-49-K23]">
      <seq>aaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45747" stop="42927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45447" g_stop="45363" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="226" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="350" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="473" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43227" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="572" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E248848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45447" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC</genome_strand>
        <mrna_strand>AAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E268276" ref_strand="+" ref_description="SGN-E268276 [cLEM-3-A12]">
      <seq>acacattcacggagaaattttaatttgggtttttagggtttgtgaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaatttgatattagaaagtgtgatgattttgtctgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45844" stop="42950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45502" g_stop="45363" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="205" r_length="141" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="271" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="346" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="470" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="593" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43250" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="669" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E268276" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45502" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGCTGTTC-ATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGA</genome_strand>
        <mrna_strand>GTCTGCTGGTCGATCTGTGACATCTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTTGATATTAGAAAGTGTGATGATTTTGTCTGGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E325293" ref_strand="+" ref_description="SGN-E325293 [cTOC-1-H3]">
      <seq>gtttgtgaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctgtcaatcaagcgcttcttcttcaaatcccaagtcattgcagtcaacaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="42984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="168" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="234" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="309" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="433" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="556" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43284" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="598" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E325293" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTCATTGCAGTCAACAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E316469" ref_strand="+" ref_description="SGN-E316469 [cTOA-25-C9]">
      <seq>tctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttccagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaataagtcggatactaggggaaaaggtgattatcgaattgattataaaccagctccgcgaatctcacaagcagataagactaatgatcaaagggcattacagcgagcactagacaggagactctatcttctaggccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaaggttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttggtggaaacgcccctatgggtcatatggtcatactacccactgaagactagaaaattctgtcaatcaagcgcttcttcctcaaatcccaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="43169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45501" g_stop="45363" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.620" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="405" r_length="124" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="528" r_length="123" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43301" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="553" r_length="25" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E316469" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45501" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGTTC-ATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTA</genome_strand>
        <mrna_strand>TCTGCTGGTCGATCTGTGACATCTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCCAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAATAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCGAATTGATTATAAACCAGCTCCGCGAATCTCACAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGGCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGGTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGGTGGAAACGCCCCTATGGGTCATATGGTCATACTACCCACTGAAGACTAGAAAATTCTGTCAATCAAG.........................................................................................................................................................CGCTTCTTCCTCAAATCCCAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E391665" ref_strand="+" ref_description="SGN-E391665 [TUS-24-O17]">
      <seq>aatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagaggggggggggcggtgtgctgagtctgccctagaatctttcattggaaatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagaacagaaaattctgtccatcaagcgcttcttcttcaaatcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="43005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="225" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="300" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="424" r_length="124" r_score="0.895"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.80"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="547" r_length="123" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="43305" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="568" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E391665" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="43305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAA</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGGGGGGGGGGCGG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAAATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGAACAGAAAATTCTGTCCATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E314036" ref_strand="+" ref_description="SGN-E314036 [cTOA-19-C13]">
      <seq>gaaaatgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccactgaagacaagaaaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="43190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="162" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="427" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43488" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="541" r_length="114" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E314036" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACTGAAGACAAGAAAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E336151" ref_strand="+" ref_description="SGN-E336151 [cTOE-12-O3]">
      <seq>tcactttcagtactgtggaatttgggtttttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45852" stop="43205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45552" g_stop="45363" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="256" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="455" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43505" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="552" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E336151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45552" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTG</genome_strand>
        <mrna_strand>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E247388" ref_strand="+" ref_description="SGN-E247388 [cLEF-46-B13]">
      <seq>atgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatattttgttggaaacgcccctatgggtcatatggtcatacaacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="43206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="158" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="423" r_length="124" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43506" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="519" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E247388" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAACGCCCCTATGGGTCATATGGTCATACAACCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E290360" ref_strand="+" ref_description="SGN-E290360 [cLES-20-C24]">
      <seq>ttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtcaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagcggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaacggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45823" stop="43215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45523" g_stop="45363" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="302" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="426" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43515" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="513" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E290360" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45523" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATG</genome_strand>
        <mrna_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTCAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGCGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E378266" ref_strand="+" ref_description="SGN-E378266 [TUS-24-O17]">
      <seq>atgcagaggtgctgttcgtctgctggtcgatctgtgacatctaaacgatggttttcttcatcaagcactgataaaattgttgcttcagtgctcttcgagagattaccagttatagttcccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaagtttatgagtctgaagagaacttgcgncagtgtgctgagtctgccctagaatctttcattggagatctttcacatacatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45799" stop="43248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45480" g_stop="45363" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="158" r_length="118" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="423" r_length="124" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43548" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E378266" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45480" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTT</genome_strand>
        <mrna_strand>CTAAACGATGGTTTTCTTCATCAAGCACTGATAAAATTGTTGCTTCAGTGCTCTTCGAGAGATTACCAGTTATAGTTCCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGTTTATGAGTCTGAAGAGAACTTGCGNCAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACATACATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E267651" ref_strand="+" ref_description="SGN-E267651 [cLEI-12-A11]">
      <seq>caaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcagtatcgacgagagtatccagaaagttttctgaagaagtcggatactaggggaaaaggtgattatcaaattgattataaaccagctccgcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaggagactctatcttctagtccatggtaccacacatggtagtggaaagcccgtctggcattttcctgaaaaaggttatgagtctgaagagaacttgcgcaagtgtgctgagtctgccctagaatctttcattggagatctttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45701" stop="43258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45401" g_stop="45363" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="105" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="180" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.620" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="304" r_length="124" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43558" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="348" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E267651" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45401" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACA</genome_strand>
        <mrna_strand>CAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAGTATCGACGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCGGATACTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCGCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAGGAGACTCTATCTTCTAGTCCATGGTACCACACATGGTAGTGGAAAGCCCGTCTGGCATTTTCCTGAAAAAGGTTATGAGTCTGAAGAGAACTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCCTAGAATCTTTCATTGGAGATCTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E546270" ref_strand="+" ref_description="SGN-E546270 [TUS-69-I19]">
      <seq>gaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatgaagtaaatctacaaaagaaaatagtttcttttgtccaaaattttgcagtggtttctaatgcttaggagataatgtgtaatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45812" stop="44680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45512" g_stop="44980" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E546270" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45512" e_stop="44980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</genome_strand>
        <mrna_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGAAGTAAATCTACAAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E308984" ref_strand="+" ref_description="SGN-E308984 [cLEY-23-H19]">
      <seq>gcaagaccactcttgcaagaaacctctacagaagtcctcgtatagtcaatacctggcctacacgtgcttggatatgtgtttctcaagagtacaacacaatggatcttcttaagactatcataaaatccatccaaggttgcaccatgggaactctaggattgttggaaaagatggatgaaagagatctagaaaatcaccttcgtgatctactgaaagaacgcaaataccttgtagtggttgatgatatatggcagagagaagcatgggaaagtttgaaaagagcattcccggatggcgagaagggcagcagagtcattattaccacgcgcaaagaggatgttgctgaaagagcagacgacagaggttttgttcataaacttcgtttcctaagccaagaagaaagttgggatctcttttgcaggaaactacttgatgttcgagcaatggttccagaaatggaaagtctagctgaggatatggtggaaaagtgtagaggcttacctcttgcgattgttgtattgagcggactactttcgcataaaaaggggctaaacgaatggaaaaaggtgaaagatcacctttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="47489" stop="48674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47789" g_stop="48374" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E308984" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47789" e_stop="48374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTACACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTAGGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAA</genome_strand>
        <mrna_strand>GCAAGACCACTCTTGCAAGAAACCTCTACAGAAGTCCTCGTATAGTCAATACCTGGCCTACACGTGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTTGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAATCACCTTCGTGATCTACTGAAAGAACGCAAATACCTTGTAGTGGTTGATGATATATGGCAGAGAGAAGCATGGGAAAGTTTGAAAAGAGCATTCCCGGATGGCGAGAAGGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATGTTGCTGAAAGAGCAGACGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGCCAAGAAGAAAGTTGGGATCTCTTTTGCAGGAAACTACTTGATGTTCGAGCAATGGTTCCAGAAATGGAAAGTCTAGCTGAGGATATGGTGGAAAAGTGTAGAGGCTTACCTCTTGCGATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGGGCTAAACGAATGGAAAAAGGTGAAAGATCACCTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E255576" ref_strand="+" ref_description="SGN-E255576 [cLEG-36-A22]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctctttgccagacatcatcaaccaccacaaggtatttgcgttctttcaatagatcacgaaggtggttttctagatctctttcatccatcttttccaacaatcctagagttcccatggtgcgaccttggatggattttatgatagtcttaagaagatccattgtgttgtactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="48812" stop="47572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48512" g_stop="47872" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E255576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48512" e_stop="47872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E258424" ref_strand="+" ref_description="SGN-E258424 [cLEG-47-M4]">
      <seq>gtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactctcccatgcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="48812" stop="47744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48512" g_stop="48044" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E258424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48512" e_stop="48044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</genome_strand>
        <mrna_strand>GTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E258522" ref_strand="+" ref_description="SGN-E258522 [cLEG-47-C16]">
      <seq>gtgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcaacgatatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="48813" stop="47819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48514" g_stop="48119" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E258522" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48514" e_stop="48119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTT</genome_strand>
        <mrna_strand>GTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAACGATATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E271747" ref_strand="+" ref_description="SGN-E271747 [cLEM-23-P4]">
      <seq>tacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaattccaagactgagagagttgctgagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="57880" stop="56719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57580" g_stop="57019" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E271747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57580" e_stop="57019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</genome_strand>
        <mrna_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E271623" ref_strand="+" ref_description="SGN-E271623 [cLEM-23-A23]">
      <seq>tacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="57880" stop="56749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57580" g_stop="57049" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E271623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57580" e_stop="57049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAA</genome_strand>
        <mrna_strand>TACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E329078" ref_strand="+" ref_description="SGN-E329078 [cTOC-24-H9]">
      <seq>gtcgccgataatcagtggattttcacctatttgagggtgtactttgaggaaggtgaatgctcaaattcgtcattctttttagtggaaaaatacatctcgagatgatggaaattgaaattgcgtccctttaccactacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatgcggagtgaatgtgacagcaagcaagcaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="60716" stop="56796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60416" g_stop="60382" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60381" i_stop="57680" i_length="2702">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57679" g_stop="57096" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="619" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E329078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60416" e_stop="60382"/>
          <exon e_start="57679" e_stop="57096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAGGTAAGAATCGAACCCCATAGCTGTGAATTTAGCTTATAATCTTCATATATATGAAGTACAGTTGAATTAGGGATGAAATTGTGACGGGATAACTTTGGTAATTGTGGGTTTTCATTTCAAGCATATTTAATTGTATTTTGTTGTCCGATTGATATGCAAATCGAGTGTAAAGTTTCTGTTAGCTTATCATACCATTGTCTACTTGTCTGTTTTAAGCCATACGGACACTTTTTGAGTCTCCACACTAGTCATGGAGCATCCACTTAGACTTCTCCATGCAAGTTTCCATGGGGAACGCATTATTGACATCTAGTTCCACTCGATGTACGGAGTCTACCTTGGAGATCCGATTAAATTCGGATGACACACGACAAGGTCCACTTAGAGGTGGCGCTCCCAACAAGATTTTTCTCTATAGCTAGGGCTTGAAGGAGACCTCTGGATAAGGGTGAAACACTCCCACCAGTACACCACAACCCATGTTGGTTATTGACATCTATTTGATAAAGCTACTATCCTTGTTTGACAACTACATTGATTAAAGTCTCCACAATGGTCAAGATGACCATTGGTGAAAATGTTTCAATGTAGTCAAGTGTACCCTTTGCCCACCAACCTAGCCTTGAACCTTGCTACACTTCCATGTCCGCTGTGTTTGATCTTGTAAACCCACCTACAACCCATTGCCTTCTTTCCTGCAGGTAGATTAGCCGAATGCTAAGTTTGGTTAGCATATAAAGTCTAAAATTACCGTGTCATGGTTGGTTGCCATGCAGGATTCATAGCTACTCTCTCATAGTAATTAGGTTCTCTTATCATAAGAAATGTTTTGCATAACCGGCTGGCTATCAGGATCCAGTGAGATGAGGGGAATTTTTCCAGTGTTGGTGAAAAGGGCACTGAGAGATGGAGAAGGTTCTTAGACCTGGTCTTTCAGAAGGGGAAGATAATAGACAAATTCCATCAAATGAGGTGGGGTATTGTGGATCCTACATCCTAGAGTATCTCCTAGGAGCAGGTATGTCTAAGTGGCTACTAGAAGTGGATGGTGGCAAGGTCTTATCAAAGAAGGATGATTGATGAGGTTGATAGGATGATAGACTTTGATCTGCAAGTAAAGGAGCGTATCGGTAGGACTGGCAGTGTGAAGTATCAATCTGTTAGAGTCAAGAGGAGCAGTAACAGAAGGTGGAGTGTTCTTGGTGTGCAATTGACATTCATCTAAAGTATGTAATTCTGTATAACATTGATATCACACATAGCTGTGGTCTTACAAGTATCACACATTTAGACAAACAATTATTCATAGGTTGAGAGCTTCAAAAAAAATATTTCATAGGTTGAGAAAAAGCAACAGGAACATAAAGTGAAACATGACATGACTCAGTAAATTGGCACTTCGCGCAGAGAAAGTATATTATGAAGTTGGGTTTGATGTCTAAATTCTGTGTTGCTTTATGGATTCATTTGACGAATTGAGTAATTTTACTGGGAATTGCTGGACTTGAACTGTGACATTTTTTTTCCTTCACAAAAAACATGATTTTGGAAGTTTTATTGTTAACAGTGAGCATCTATGTTCTATGGATTTTAATTTCTTTTCTCATCCCAAAGAAATCAAAACAAGATATAAGAAAAAGAGAGCAAAACAATAGAAAAAACTCCAACGCAGCTTCAAAACTTTTTTTTTTTTGGTATTCAGTATCTAAGTGACATGTACTTTCTCAACTGACTCTTGTGAAAAACTGATGTGTGACATCTTTTTTCTGTTTTGTTGGTATTTTGTAGTGGTATTTAGTGTCATTTATGTCATTGATGCAATCTTGATATTAATTACTAGCATGAAATGAATGTGACACATCATTTAATTAGACGGAAGATGGATTAAAGAGGAAGCCATCTGGAAGAAGGCCCTATGTCGAAAACATTTAAACAGTTACACTCTTTAGTGTGTGTTCATCGGAACTGGGGGTTAACCATGATGTTTTCCAACTCGATGAGTTTCTCCATATCGAGCAATTAATAGTCTTAATAATCAGATTCAACAGTAACATATTACATAAAACATTATCTTAAATGTGGATAAGCAAGATAACTTACCGCAGACCAATTAATTTATGTTAACACTAGCATTTATGCATAGAATGCCAAAACCAATTCTCTTCAAACCAATTCCACACGCACAAAAAGAAATTAAACACTACTGAAGACATTGACTCTCTTTGGCAGCCCTGAAATAATCAGCAAAGCGGCAGAAACCTGTTTAATGCTTTTACAATCCAACTTCATTTATGCATATGTCTTCAAGTGCTTGTCAAAAATGGATCAATAAAAGACAGCTTCTTTTCCCGTTTTACCCAAATTGTAAGACACTTTTTAACATAATAACTAGTAGTCAATAAAAACGAAAAGATTTATCAATTATTTAAAATAATGATTTAACTATAATGTTCAAGGCATTATAGTTACATCTAATTTTTTTTATAGATTATGTGGGGAAGGTACAATCCTCAAAAATATTGTACATAGTTTTGAAAATTTTATAATTTCTCTTCAAAGTTATATATGTTATTACTACTGATTCTTGTGTGCTTACTGGTACCCGCTTCATAAGGACTTCCTATAATATAAGCCCAAAGTTTGTGGTTGATGCTTAATCATGGGAAAGAGGATTTATTTTCTCCTTTTGTCTACTTTTACAGGGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGT</genome_strand>
        <mrna_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGCGGAGTGAATGTGACAGCAAGCAAGCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E539888" ref_strand="+" ref_description="SGN-E539888 [TUS-59-O2]">
      <seq>tcgttatcgaggggggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattangtttcatctcttaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="63236" stop="68227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63536" g_stop="64083" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64084" i_stop="67721" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67722" g_stop="67927" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="753" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E539888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63536" e_stop="64083"/>
          <exon e_start="67722" e_stop="67927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCAT</genome_strand>
        <mrna_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTANGTTTCATCTCTT-AAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E539885" ref_strand="-" ref_description="SGN-E539885 [TUS-59-O2]">
      <seq>gggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattaggtttcatctcttaaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcatcaatcgcgaattttgcggattgttttagtccttgtgcagttgatctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="63249" stop="68277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63549" g_stop="64083" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64084" i_stop="67721" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67722" g_stop="67974" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="788" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="803"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E539885" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539885" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63549" e_stop="64083"/>
          <exon e_start="67722" e_stop="67974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</genome_strand>
        <mrna_strand>GGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E288154" ref_strand="+" ref_description="SGN-E288154 [cLES-7-B13]">
      <seq>acgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggtgtttgagcaattgatccagaatttggcagataatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctctctaccattttgttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattctgagatggggtcacgatgtgatacagatgccttgtaagcatgtttatcataaggattgtctcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="63254" stop="64198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63554" g_stop="63898" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E288154" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63554" e_stop="63898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCA-GATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTG</genome_strand>
        <mrna_strand>ACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGTGTTTGAGCAATTGATCCAGAATTTGGCAGATAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCTCTACCAT-TTTGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTCTGAGATGGGGTCACGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTCTCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E314139" ref_strand="+" ref_description="SGN-E314139 [cTOA-21-M17]">
      <seq>gatcttgtatttttttacatatttgttgttttggggctctgttttttttttttttgcttccatgaatcgagctttttctattacttgaaacttcaactgaacctgctttattgatttgtaaaagttttttttcttcttttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttcttctttgttggggtttgctcaattcagctcataaatcccatattggtgctctatttggacctgattttcaattatttgttgttttttatttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="78478" stop="79558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78778" g_stop="79258" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E314139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78778" e_stop="79258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTC</genome_strand>
        <mrna_strand>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E545942" ref_strand="+" ref_description="SGN-E545942 [TUS-69-A20]">
      <seq>actactatttttacatactatttgtttttgttttctactttgttaggctcattctcttgctttactttacaagagtggtgaatctttgattttgttaagtgttttgacatatttgttgtattggggctctgttttttttctcctatgaatagagctttttctattacttgaaacttcaactgaagctgctttctttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttttctttgttggggtttgctcaattcagctcataaatcccatattactactctatttggacttgattttctattatttgttgtttttttctttgttggggtttgctcaattcagctcacaaatcccatattagtactctattttggatttgattttcaattattgttgggttttgtttgttgataaatcccagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgctgcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcggtcagctgagcctttcattatagctgctactggtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="78407" stop="79801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78789" g_stop="79501" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="780" r_length="679" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E545942" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78789" e_stop="79501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTG-TTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTG</genome_strand>
        <mrna_strand>TTTTGACATATTTGTTGTATTGGGGCTCTG------TTTTTTTT-CTCCTATGAATAGAGCTTTTTCTATTACTTGAAACTTCAACTGAA---GC-----TG-CTT-T----------------C-TTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTT-TTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTACTACTCTATTTGGACTTGATTTTCTATTATTTGTTGTTTTTTTCTTTGTTGGGGTTTGCTCAATTCAGCTCACAAATCCCATATTAGTACTCTATTTTGGATTTGATTTTCAATTATTGTTGGGTTTTGTTTGTTGATAAATCCCAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCTGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGGTCAGCTGAGCCTTTCATTATAGCTGCTACTGGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E339484" ref_strand="+" ref_description="SGN-E339484 [cTOF-4-P12]">
      <seq>tttttttttttttttgcttccatgaatcgagctttttctattacttgaaacttcaactgaacctgctttattgatttgtaaaagttttttttcttcttttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttcttctttgttggggtttgctcaattcagctcataaatcccatattggtgctctatttggacctgattttcaattatttgttgttttttatttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgcggcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcgtcaagctgagccttcaattatagctgctactggtactggtactattcctgctagtttctcgactgtatctgtatcggtacggaactcaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="78519" stop="79857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78818" g_stop="79557" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E339484" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78818" e_stop="79557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E541078" ref_strand="+" ref_description="SGN-E541078 [TUS-61-K24]">
      <seq>gggcccccctcgagactagttctctctcagctcaaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="78770" stop="79651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79090" g_stop="79351" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="291" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E541078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79090" e_stop="79351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTG</genome_strand>
        <mrna_strand>CTCA-AATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E541080" ref_strand="+" ref_description="SGN-E541080 [TUS-61-K24]">
      <seq>tttttttttttttttttttgagtaggaaagtttaagctcacaactgatatagtttcaacaaattacagaattgaattcaacggaaaccgccatggtttccttacaaaacattcatgtggaactacaggttttcatagtccacactgatcccctattatatcttgttacaatgtgatcaaagcagcttattgtgaggtctgcaaacaacagaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgcttgtgtttcgtgttatcgtcccacagcttacaacaccaaaactcggtgaacgtaaactcttgacaaatgagatatagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctagttcatttctcactcactagaacctagcaacaaatttctcatctaacacaaacaagaacattaaaacacatttatacgatatattaacaacaataacgataacaataacaataacaataatcatatcttcaacgtccgtcgtcgtctcttctcccggaagagggctgtggaggacctgatagagaagctagcaaattgagatgcccttgagtcattggtaagtaattcccaactctagcagctgaagcctcacccatctgctgctgaaagaatctagaactctgcgaacttaacgctgccgcggctgcagctgctgcagccgcggaggttggcaccatcatttcaggtggcggtgccgccgcnaagctccaaatttgaccaaatcangcctagctggaacagcccaaaaccagctgtgggaccacagcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90858" stop="79410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80529" g_stop="79710" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E541080" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80529" e_stop="79710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAAATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCNAAGCTCCAAATTTGACC-AAATCANGCCTAGCTGGAACAGCCCAAAA-CCAGCTGTGGGA-CCACAGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E545941" ref_strand="-" ref_description="SGN-E545941 [TUS-69-A20]">
      <seq>gaaatgatggtgccgacctccgcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcgggtcctccacagccttcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgaaaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcataataagctgctttgatcacattgtaacaagagataataggggatcagtgtggactatgaaaacttgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcatttctgtaatttgttgaaactatatcagttgtgagcttaaactttcctactcaaaagattgctatggacttcaatttattactgaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="79501" stop="90863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79801" g_stop="80548" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80549" i_stop="81195" i_length="647">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81196" g_stop="81213" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="774" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E545941" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545941" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79801" e_stop="80548"/>
          <exon e_start="81196" e_stop="81213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATG---A---TTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTT--ACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTCAACTTACATTGTGTTATCTTGAATGGGTGCTATAATTAGATGTTTTCGACATCTCAATGATTGAGTTGACACCATACTGTATAAAATGAAATGGTTCATTTATTGCATTACTGGTTACACGTGTCGACTGATCAACTAATGCATGGGACAGTGTGAAGTTGAAACATGAAATGCTGTGGAGGCGAACGTATAAGGAGGATAGAACTCTAAATTTCTATACTCAAGCTTTCTTAGATTGGTTATGGACCAGATAATCTTGCTACAGCTTGATGTTTATTCTATGTATAAATGTGCGATGTGTGCCATAGATTCGAAATGGAACAGCTCAAAGTTTCAACAGAAAGAGTATTTGATGATTATTTACGTTAATGATCTTCATGCTATATAAGTTCCTCAGTACCACTCAGAAGATTAAACTGTAGTTGTTAAAAATGTTATAGTATATCATACATTTATGGATGACATGATGCCGTATTCTATCATGTGCTGCTTCAACATGGAGGAGGAAGGAGTTACACTGCAGCATCTGGGAGGATTCTGCTCTGCAGCATCTGAGATTAACGACACCTATCAGCTTTAATTTTGCATCAGATTAGGTAAGATGTGGTTATATTCGCTTTACTTGTGATTCTTTTTGAATCTTATTAGTTTAGAAGATAAAGCATATAGAT</genome_strand>
        <mrna_strand>GAAATGATGGTGCCGACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCGGGTCCTCCACAGCCTTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAAAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCATAATAAGCTGCTTTGATCACATTGTAACAAGAGATAATAGGGGATCAGTGTGGACTATGAAAACTTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCATTTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTGAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E281884" ref_strand="+" ref_description="SGN-E281884 [cLES-2-D15]">
      <seq>gcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="79522" stop="80588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79822" g_stop="80288" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E281884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79822" e_stop="80288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTT</genome_strand>
        <mrna_strand>GCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E732455" ref_strand="+" ref_description="SGN-E732455 [LB02AH06]">
      <seq>gattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcacaataagctgctttgatcacattgtaacaagatataataggggatcagtgtggactatgaaaacctgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcaattctgtaatttgttgaaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="79571" stop="80782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79871" g_stop="80489" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E732455" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79871" e_stop="80489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTG</genome_strand>
        <mrna_strand>GATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E293361" ref_strand="+" ref_description="SGN-E293361 [cLET-18-B23]">
      <seq>ttttttttttttttttttgagtaggaaagtttaagctcacaactgatatagtttcaacaaattacagaattgaattcaacggaaaccgccatggtttccttacaaaacattcatgtggaactacaggttttcatagtccacactgatcccctattatatcttgttacaatgtgatcaaagcagcttattgtgaggtctgcaaacaacagaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgctggtgtttcgtgttatcgtcccacagcttacaacaccaaaactcggtgaacgtaaactcttgacaaatgagatatagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctagttcatttctcactcactagaacctagcaacaaatttctcatctaacacaaacaagaacattaaaacacatttatacgatatattaacaacaataacgataacaataacaataacaataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90858" stop="79722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80528" g_stop="80022" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E293361" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80528" e_stop="80022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTGGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E226551" ref_strand="+" ref_description="SGN-E226551 [cLEL-26-J4]">
      <seq>tttttttttttttttttttttttttagttccaacaaattacagaattgaattcaacggaaaccgccatggtttccttacaaaacattcatgtggaactacaggttttcatagcccacactgatcccctattatatcttgttacaatgggatcaaagcagcttattgggaggtctgcaaacaacaaaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgcttgtgtttcgggtatatcgccccacagcttacaacaccaaaactcggtgaacgtaaactcttgacaaatgagatttagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctagttcatttttcactcactagaacctagcaacaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90858" stop="79808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80504" g_stop="80108" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E226551" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80504" e_stop="80108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGT-TATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTAGTTCCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGCCCACACTGATCCCCTATTATATCTTGTTACAATGGGATCAAAGCAGCTTATTGGGAGGTCTGCAAACAACAAAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGGGTATATCGCCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATTTAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTTTCACTCACTAGAACCTAGCAACAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E545948" ref_strand="+" ref_description="SGN-E545948 [TUS-69-A24]">
      <seq>taaattgaagtccatagcaatcttttgagtaggaaagtttaagctcacaactgatatagtttcaacaaattacagaaatgaattcaacggaaaccgccatggtttccttacaaaacattcatggggaactacaagttttcatagtccacactgatcccctattatctcttgttacaatgggatcaaagcagcttattatgaggtctgcaaacaacggaacaaaccccaccaaattcatcatcacaagcaacaacttcccctgatgcttgtgtttcgtggtatcgtcccacagcttacaacaccaaaactcggtgaacgtgtaaactcttgacaaatgagatatagcaaacaaacctaatcctagcaataattcatgaaattgaacaagcccctaattcatttttcactcactagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="80836" stop="79822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80536" g_stop="80122" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E545948" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80536" e_stop="80122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGAAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAAC--GTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAAC</genome_strand>
        <mrna_strand>TAAATTGAAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAAATGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGGGGAACTACAAGTTTTCATAGTCCACACTGATCCCCTATTATCTCTTGTTACAATGGGATCAAAGCAGCTTATTATGAGGTCTGCAAACAACGGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGGTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAATTCATTTTTCACTCACTAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E344770" ref_strand="+" ref_description="SGN-E344770 [cTOF-21-P15]">
      <seq>taagattttagaacgtagaaaaccacaattttcaaaagctaatcccaaattccaaaaattttccgatcggagatttttttttccgatcagaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgaggttgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaatatttacgcaaccagtattccactgcaacaacatctctggatttgtagatccggttgttccagataatgaaaacagtgccttgtactccacacatacattcaagattttgttcaggatggtggttgtgggactttcgtgccattatttttcaacttaatcgcctctgtgagacgagctcagcaacagtctggggtacagccacgggcagaccctctccaagctgcacaaactccagttgatgagatgattagacatgcttatgtcgatcccaatgatccaacgaaaatcttcttgcagcagcctactccagagtcgcacttaggcgtcgntcataccaatcacaacctgcttaaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="83924" stop="86997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84224" g_stop="84439" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85008" g_stop="85110" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="318" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85111" i_stop="85853" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85854" g_stop="85925" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="390" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85926" i_stop="86272" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86273" g_stop="86478" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="595" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86479" i_stop="86591" i_length="113">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86592" g_stop="86697" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="699" r_length="104" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E344770" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84224" e_stop="84439"/>
          <exon e_start="85008" e_stop="85110"/>
          <exon e_start="85854" e_stop="85925"/>
          <exon e_start="86273" e_stop="86478"/>
          <exon e_start="86592" e_stop="86697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGCGTATGTCAACGTTGCTTTCTCCTTTTTACAACGACATTAGTTAACGATCCTTTCCCCCCCTCAATATGCTAACTGGTTTTACTGAATTCTTATGGTGTTTGTTGATTTTGCAGTTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</genome_strand>
        <mrna_strand>TAAGATTTTAGAACGTAG-AAAACCACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTC-AGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC.................................................................................................................TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGC-ACTTAGGCGTCGNTCATACCAATCACAACCTGCTT-AAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E688005" ref_strand="+" ref_description="SGN-E688005 [T3_tus_85_B15]">
      <seq>gagactgtttgttatcagtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctcttttgttactcttactattatattaacaagttactatggcgctccttcagtatctgctgtaactagaccaacatatgcataatgtgcaattcagaatggcgattccaagtataacgattagcgatatttcttttgttgcttctttttgaggctgaacaaaactttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaaatacgatccttctcctatgaaactgtactgtttgtttctaaagctttgacatgttaattgaatggtattatgacatgatttatatctgatttgtatattaagcacaacattgctagatacaacatctgctaggaagcatgttatggcatatattgttcggatatttgttaagatgcatgacatgaattcgtgttcatctgttctatgtttttgttcagagaaataatctggtaagttggtgacttttgctgaacaagaagttacaaaactgagaaatgtaagctacatttgctttgacaaagtttatttacctttttttcttctgcagctttttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="84690" stop="86165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84990" g_stop="85865" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E688005" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84990" e_stop="85865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGAC-TTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</genome_strand>
        <mrna_strand>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTTGCTGAACAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTTCTTCTGCAGCTTTTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E333932" ref_strand="+" ref_description="SGN-E333932 [cTOD-24-D9]">
      <seq>agactgtttgttatcagtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctctttttgtactcttactattatattaacaagtactatggcgctcccttcagtatctgctgtaactagacccaacatatgcataatgtgcaattcagaatggcgatttccagtataacgattagcgatatttcttttgttgcttctttttgaggctgaaacaaacttttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaatacgatccttctcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="84691" stop="85844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84991" g_stop="85544" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E333932" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84991" e_stop="85544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCT-CCTTCAGTATCTGCTGTAACTAGA-CCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTG-AACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTAT</genome_strand>
        <mrna_strand>AGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTTGTACTCTTACTATTATATTAACAAG-TACTATGGCGCTCCCTTCAGTATCTGCTGTAACTAGACCCAACATATGCATAATGTGCAATTCAGAATGGCGATTTCCAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAAACAAACTTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTG-AATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTC-AATACGATCCTTCTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E746071" ref_strand="+" ref_description="SGN-E746071 [GI|47105331]">
      <seq>gacaacaaaaaaattagaagaaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91160" stop="25336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90861" g_stop="90574" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="462" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="87108" g_length="1154"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="1616" r_length="1154" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87107" i_stop="86952" i_length="156">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.316" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86951" g_stop="86931" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1617" r_stop="1637" r_length="21" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E746071" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90861" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="87108"/>
          <exon e_start="86951" e_stop="86931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTGACAGTCAAATTGTCTCCACGTGATATAAGTCACGTGTTCAATCTGTAGAAAACTGGAAATAATCACTAA</genome_strand>
        <mrna_strand>GACAACAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACAG............................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E744505" ref_strand="+" ref_description="SGN-E744505 [GI|642910]">
      <seq>ggcacgagggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaactttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactagatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcactattttacctcctgtatttaaagcattttttggtcacttgagtacatctgtactatatattaacaagaggagtcttggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91100" stop="86700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90805" g_stop="90574" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="402" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="87000" g_length="1262"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="1664" r_length="1262" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E744505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1668</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90805" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="87000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</genome_strand>
        <mrna_strand>GGCACGAG-GGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCA---TCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTAGATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCACTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E339460" ref_strand="+" ref_description="SGN-E339460 [cTOF-4-D18]">
      <seq>gactgctggaattccacgcttaagcggttacaaggacagggaacatacgaaccacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttacctcctgtatttaaagcattttttggtcnnnnaaaanaaaaaaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="87857" stop="86747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87557" g_stop="87041" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="529"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E339460" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87557" e_stop="87041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAA-CACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGA</genome_strand>
        <mrna_strand>GACTGCTGGAATTC-CACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACCACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCNNNNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E229048" ref_strand="-" ref_description="SGN-E229048 [cLEL-29-F7]">
      <seq>atgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="87762" stop="86773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87462" g_stop="87074" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E229048" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229048" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87462" e_stop="87074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTAC</genome_strand>
        <mrna_strand>ATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E228760" ref_strand="-" ref_description="SGN-E228760 [cLEL-29-F7]">
      <seq>atgcaaaccagagtgatacagaaaattttggcagattctatagagggatgctggaggaaggtgtttactttgcgccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattaatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="87666" stop="86775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87366" g_stop="87081" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="310"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E228760" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228760" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87366" e_stop="87081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATT</genome_strand>
        <mrna_strand>ATGCAAACCAGAGTGATACAGAAAATTTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCGCCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E554638" ref_strand="+" ref_description="SGN-E554638 [cTSC-4-O9]">
      <seq>gttacaaaatcaccttttattcaacagaacaaaaacttaaaaaggaaaatctctccatctagcatacaaaaagaaatatagtggttaaatttgcttcaaaactttttcagctgcagctacagtcctttgaatatcctctggagtgtgtgctaagctagtaaatccagcctcaaactgtgatggtgcaaagtaaacaccttcctccagcatccctctatagaatctgccaaatttttctgtatcactcttctttgcatccgaaaagttatagatgggaccatccgcgaagaagaagccaaacatcccccttatggagccaccacacattgcatgaccggtcttctttccagcatccaagattccttgtgtaagttccgcggtgatcttgtccaagtgttcgtatgttccctgtccttgtaaccgcttaagcgtgtgaattccagcagtcatggccaatgggtttccacttagggtgccagcttgatacattggtcctgcaggtgctaccatctccattatatcccgtcttcctccgtaagcacctactggcaagccaccgccaataatcttcccgagtgttgtcaaatctggagttattccaaaatactcttgagcaccgccatatgccaatctaaatccagtcatgacttcgtcgaaaataagaagtgcatcattctctttggtgatcttgcgaatggcagcaagaaattctagcttaggtgggatgaagccagcatttccgactacaggctcgaaaattacagcggctatttctcctttgtggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="86810" stop="88196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87110" g_stop="87896" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E554638" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87110" e_stop="87896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAGAATTACAGCGGCTATTTCTCCTTTGT-GCTCC</genome_strand>
        <mrna_strand>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAAAATTACAGCGGCTATTTCTCCTTTGTGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E548191" ref_strand="+" ref_description="SGN-E548191 [TUS-58-O21]">
      <seq>ccttttattcaactttaccaaaacttaaaaaggaaaatctctccatctagcatacaaaaagaaatatagtggttaaatttgcttcaaaactttttcagctgcagctacagtcctttgaatatcctctggagtgtgtgctaagctagtaaatccagcctcaaactgtgatggtgcaaagtaaacaccttcctccagcatccctctatagaatctgccaaatttttctgtatcactcttctttgcatccgaaaagttatagatgggaccatccgcgaagaagaagccaaacatcccccttatggagccaccacacattgcatgaccggtcttctttccagcatccaagattccttgtgtaagttccgcggtgatcttgtccaagtgttcgtatgttccctgtccttgtaaccgcttaagcgtgtgaattccagcagtcatggccaatgggtttccacttagggtgccagcttgatacattggtcctgcaggtgctaccatctccattatatcccgtcttcctccgtaagcacctactggcaagccaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="86838" stop="87968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87122" g_stop="87668" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-E548191" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87122" e_stop="87668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCG</genome_strand>
        <mrna_strand>CCTTTTATTCAACTTTACCAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E731952" ref_strand="+" ref_description="SGN-E731952 [LA28CF09]">
      <seq>ccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaagtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaatttaaccactagatttctttttgtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88346" stop="86870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88046" g_stop="87170" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E731952" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88046" e_stop="87170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCT</genome_strand>
        <mrna_strand>CCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAAGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGC-AATTTAACCACTAGATTTCTTTTTGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E268562" ref_strand="+" ref_description="SGN-E268562 [cLEI-13-B5]">
      <seq>gcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatgtactagcttagcacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88101" stop="86951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87801" g_stop="87251" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E268562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87801" e_stop="87251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACT</genome_strand>
        <mrna_strand>GCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATGTACTAGCTTAGCACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E730594" ref_strand="+" ref_description="SGN-E730594 [LA24CD09]">
      <seq>ccattggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaaatttggcagattctatagagggatgctggaggaaggtgtttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88491" stop="86997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88192" g_stop="87297" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="897" r_length="897" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E730594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88192" e_stop="87297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAG-AAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTT</genome_strand>
        <mrna_strand>CCATTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E702532" ref_strand="+" ref_description="SGN-E702532 [FA18DH11]">
      <seq>cagatatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataaggggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaaagagtgatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88485" stop="87046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88185" g_stop="87346" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E702532" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88185" e_stop="87346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAA-GGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAG-AAGAGTGATACAG</genome_strand>
        <mrna_strand>CAGATATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAAGAGTGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E698411" ref_strand="+" ref_description="SGN-E698411 [FA06AH07]">
      <seq>cggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaagaatcttggatgctggaaaaaagaccggccatgcaatgtgtggtggctccataaaggggatgtttggcttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88478" stop="87098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88179" g_stop="87398" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E698411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88179" e_stop="87398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTC</genome_strand>
        <mrna_strand>CGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAAGAATCTTGGATGCTGGAAAAAAGACCGGCCATGCAATGTGTGGTGGCTCCATAAAGGGGATGTTTGGCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E291007" ref_strand="+" ref_description="SGN-E291007 [cLET-8-F12]">
      <seq>ttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88302" stop="87281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88002" g_stop="87581" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E291007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88002" e_stop="87581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACC</genome_strand>
        <mrna_strand>TTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E314876" ref_strand="+" ref_description="SGN-E314876 [cTOA-31-G5]">
      <seq>ttgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacnacactcgggaagattattggcggtggcttgccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="89386" stop="87355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89086" g_stop="89034" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88261" g_stop="87655" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="660" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E314876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89086" e_stop="89034"/>
          <exon e_start="88261" e_stop="87655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAG</genome_strand>
        <mrna_strand>TTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACNACACTCGGGAAGATTATTGGCGGTGGCTTGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E265387" ref_strand="+" ref_description="SGN-E265387 [cLEI-9-K5]">
      <seq>ttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttgcaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcgggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88519" stop="87379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88219" g_stop="87679" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E265387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88219" e_stop="87679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTC-GGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGA</genome_strand>
        <mrna_strand>TTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTGCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E700113" ref_strand="+" ref_description="SGN-E700113 [FA12AF09]">
      <seq>ggcctcttggggaccagctataattggtcatgcggatgatgaggtgctatcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcacgagtattttggaataactcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="89372" stop="87398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89076" g_stop="89034" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88261" g_stop="87698" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="607" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E700113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89076" e_stop="89034"/>
          <exon e_start="88261" e_stop="87698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCA</genome_strand>
        <mrna_strand>GGCCTCTTGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTATCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCACGAGTATTTTGGAATAACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E728310" ref_strand="+" ref_description="SGN-E728310 [LA17BF03]">
      <seq>gcattctttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagagatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90922" stop="87499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90622" g_stop="90574" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="223" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="87799" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="686" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E728310" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90622" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="87799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCA</genome_strand>
        <mrna_strand>GCATTCTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAGATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E320345" ref_strand="+" ref_description="SGN-E320345 [cTOB-22-I13]">
      <seq>agaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgangagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90926" stop="87523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90626" g_stop="90574" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="227" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="87825" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="664" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E320345" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90626" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="87825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAA</genome_strand>
        <mrna_strand>AGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGANGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E267726" ref_strand="+" ref_description="SGN-E267726 [cLEI-12-B3]">
      <seq>gacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctgatccatttcttgttaaagcaggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="89452" stop="87541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89152" g_stop="89034" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88261" g_stop="87841" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="540" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E267726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89152" e_stop="89034"/>
          <exon e_start="88261" e_stop="87841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTG</genome_strand>
        <mrna_strand>GACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E718502" ref_strand="+" ref_description="SGN-E718502 [FC04DD12]">
      <seq>atggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="88480" stop="87597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88180" g_stop="87897" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E718502" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88180" e_stop="87897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGA</genome_strand>
        <mrna_strand>ATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E318948" ref_strand="+" ref_description="SGN-E318948 [cTOB-11-P20]">
      <seq>tctgaagaagctttcagcaaatccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaattcgagggttgttaccatggtcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90900" stop="87733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90600" g_stop="90574" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="201" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88033" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E318948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90600" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTG</genome_strand>
        <mrna_strand>TCTGAAGAAGCTTTCAGCAAATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E267421" ref_strand="+" ref_description="SGN-E267421 [cLEI-8-C18]">
      <seq>tgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91075" stop="87761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90775" g_stop="90574" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88061" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="577" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E267421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90775" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAA</genome_strand>
        <mrna_strand>TGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E200164" ref_strand="+" ref_description="SGN-E200164 [cLEB-7-B23]">
      <seq>gcacgaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91100" stop="87771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90802" g_stop="90574" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="403" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88071" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="594" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E200164" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90802" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAA</genome_strand>
        <mrna_strand>GCACGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E343611" ref_strand="+" ref_description="SGN-E343611 [cTOF-20-B1]">
      <seq>gaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91116" stop="87772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90816" g_stop="90574" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="417" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88072" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="607" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E343611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90816" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTA</genome_strand>
        <mrna_strand>GAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E295005" ref_strand="+" ref_description="SGN-E295005 [cLET-17-N8]">
      <seq>tctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="90963" stop="87783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90663" g_stop="90574" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="264" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88083" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="443" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E295005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90663" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCAC</genome_strand>
        <mrna_strand>TCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E317523" ref_strand="+" ref_description="SGN-E317523 [cTOB-17-A3]">
      <seq>aaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaatatacactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91141" stop="87884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90841" g_stop="90574" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="442" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88184" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="520" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E317523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90841" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCA</genome_strand>
        <mrna_strand>AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAATATACACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E325340" ref_strand="+" ref_description="SGN-E325340 [cTOC-1-J12]">
      <seq>aagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91100" stop="87888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90800" g_stop="90574" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="401" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88188" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="475" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E325340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90800" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACT</genome_strand>
        <mrna_strand>AAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E697701" ref_strand="+" ref_description="SGN-E697701 [FA03DE05]">
      <seq>cgaataggaagagttggtaacaatggctgctgtaaatggtgtatgactttcatggccatcaaaattgaccaaaaatcaaacacccaaatgggcgtttttctccatctcaccgtcgatgcaacccatcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaactttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcagatgatgaggtgctagcagcattggttgaaacaatgaagaaaggaaccagtttcggcgctccatgtctccttgaaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91101" stop="87890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90802" g_stop="90574" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="401" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88190" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="473" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E697701" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90802" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGG-GTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACA</genome_strand>
        <mrna_strand>CGAATAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTATGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGCGTTTTTCTCCATCTCACCGTCGATGCAACCCA---TCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACTTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCAGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGTTGAAACAATGAAGAAAGGAACCAGTTTCGGCGCTCCATGTCTCCTTGAAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E322880" ref_strand="+" ref_description="SGN-E322880 [cTOB-30-L20]">
      <seq>aagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcngtgctccatgtctcccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91118" stop="87896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90818" g_stop="90574" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="419" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88196" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="486" r_length="67" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E322880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90818" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCT-CCTTGAA</genome_strand>
        <mrna_strand>AAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCNGTGCTCCATGTCTCCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E317415" ref_strand="+" ref_description="SGN-E317415 [cTOA-28-F5]">
      <seq>aagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaagtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91094" stop="87898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90794" g_stop="90574" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="395" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88198" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="459" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E317415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90794" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTG</genome_strand>
        <mrna_strand>AAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E289808" ref_strand="+" ref_description="SGN-E289808 [cLET-9-D17]">
      <seq>tcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91120" stop="87934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90820" g_stop="90574" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="421" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88234" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="449" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E289808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90820" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGA</genome_strand>
        <mrna_strand>TCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E324578" ref_strand="+" ref_description="SGN-E324578 [cTOC-9-N21]">
      <seq>gagttggtaacaatggctgctgtaaatggtggaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaagagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaaaggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgctgatgatgaggtgctagcagcattggctgaaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91092" stop="87934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90792" g_stop="90574" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="393" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="88234" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="421" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E324578" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90792" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="88234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGA</genome_strand>
        <mrna_strand>GAGTTGGTAACAATGGCTGCTGTAAATGGTGGAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAAGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCTGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/sgn_ests_tomato" ref_id="SGN-E283308" ref_strand="+" ref_description="SGN-E283308 [cLER-12-N11]">
      <seq>tttttaacaatggctgctgctaatggagtatgactttcatggccatcaaaattgaccaaaaatcaaacacccaagatgggagtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91089" stop="90318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90789" g_stop="90618" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-E283308" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90789" e_stop="90618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAA-ATGGG-GTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAA</genome_strand>
        <mrna_strand>TTTTTAACAATGGCTGCTGCTAATGGAGTATGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAGATGGGAGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>98</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9140" PGL_stop="3006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9140" e_stop="8057"/>
            <exon e_start="7956" e_stop="7620"/>
            <exon e_start="5558" e_stop="5396"/>
            <exon e_start="5171" e_stop="4953"/>
            <exon e_start="3990" e_stop="3842"/>
            <exon e_start="3563" e_stop="3434"/>
            <exon e_start="3349" e_stop="3006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9140" e_stop="8057" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7620" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="5396" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="4953" e_length="219"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3842" e_length="149"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3563" e_stop="3434" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="3349" e_stop="3006" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9140" stop="8587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8824" stop="8123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8718" stop="8057"/>
              <exon start="7956" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8112" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7873" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7873" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4953"/>
              <exon start="3990" stop="3924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7873" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7822" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="5069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5032" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3434"/>
              <exon start="3349" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369678" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3530" stop="3434"/>
              <exon start="3349" stop="3017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N  I  *  H   </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V  I  Y  N  T  </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  Y  I  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8484" stop="8057"/>
                    <exon start="7956" stop="7620"/>
                    <exon start="5558" stop="5396"/>
                    <exon start="5171" stop="5149"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGGWYRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9140" e_stop="8057"/>
            <exon e_start="7956" e_stop="7620"/>
            <exon e_start="5558" e_stop="4953"/>
            <exon e_start="3990" e_stop="3842"/>
            <exon e_start="3563" e_stop="3434"/>
            <exon e_start="3349" e_stop="3006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9140" e_stop="8057" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7620" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="4953" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3842" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3563" e_stop="3434" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3349" e_stop="3006" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9140" stop="8587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8824" stop="8123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8718" stop="8057"/>
              <exon start="7956" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8112" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5410" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3434"/>
              <exon start="3349" stop="3294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5032" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3434"/>
              <exon start="3349" stop="3006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369678" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3530" stop="3434"/>
              <exon start="3349" stop="3017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAATATATAACACGC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R  F  V  Q  P  Y  P  Q  L  N  L  K  K  A  V  S  *  L  F  L  L  R  T  P  V  R  Q  I  R  C  S  *  W  K  A  Y  L  I  L  L  F  R  W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V  I  Y  N  T  </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y  G  L  S  N  P  I  H  N  *  I  *  K  K  L  S  R  D  S  F  C  *  G  L  L  C  D  K  S  D  A  V  D  G  K  L  T  *  S  F  F  S  G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  Y  I  T  R </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  V  C  P  T  L  S  T  I  K  S  K  K  S  C  L  V  T  L  S  A  K  D  S  C  A  T  N  Q  M  Q  L  M  E  S  L  P  D  P  S  F  Q  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N  I  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8484" stop="8057"/>
                    <exon start="7956" stop="7620"/>
                    <exon start="5558" stop="4953"/>
                    <exon start="3990" stop="3842"/>
                    <exon start="3563" stop="3434"/>
                    <exon start="3349" stop="3254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVCPTLSTIKSKKSCLVTLSAKDSCATNQMQLMESLPDPSFQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9140" e_stop="8057"/>
            <exon e_start="7956" e_stop="7620"/>
            <exon e_start="5558" e_stop="5295"/>
            <exon e_start="5171" e_stop="5090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.612" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9140" e_stop="8057" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7620" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="5295" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.612" acc_prob="0.747">
            <gDNA_intron_boundary i_start="5294" i_stop="5172" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="5090" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9140" stop="8587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8824" stop="8123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8718" stop="8057"/>
              <exon start="7956" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8112" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7702" stop="7620"/>
              <exon start="5558" stop="5295"/>
              <exon start="5171" stop="5100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7700" stop="7620"/>
              <exon start="5558" stop="5295"/>
              <exon start="5171" stop="5090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8484" stop="8057"/>
                    <exon start="7956" stop="7620"/>
                    <exon start="5558" stop="5295"/>
                    <exon start="5171" stop="5091"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1110</number_coding_nucleotides>
                  <number_encoded_amino_acids>370</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVAGIGTNENMVDKLLQRSVIKHENNRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9140" e_stop="8057"/>
            <exon e_start="7956" e_stop="7620"/>
            <exon e_start="5558" e_stop="5396"/>
            <exon e_start="5171" e_stop="4845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9140" e_stop="8057" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7620" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="5396" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="5171" e_stop="4845" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9140" stop="8587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8824" stop="8123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8718" stop="8057"/>
              <exon start="7956" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8112" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="5458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7873" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7822" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="5069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7727" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACC</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  V  *  N  L  N  E  N  *  Y  A  F  L  I  L  F  G  D  E  F  H  Q  G  L  F  *  V  S  D  L  T  K  Q  I  W  H  T </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G  Y  K  I  S  M  K  T  N  M  H  F  *  Y  C  L  V  M  S  F  I  K  V  C  F  K  *  V  I  *  L  N  K  F  G  T   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T  G  I  K  S  Q  *  K  L  I  C  I  F  D  I  V  W  *  *  V  S  S  R  F  V  L  S  E  *  F  D  *  T  N  L  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8484" stop="8057"/>
                    <exon start="7956" stop="7620"/>
                    <exon start="5558" stop="5396"/>
                    <exon start="5171" stop="5149"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGGWYRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="4125" e_stop="4089"/>
            <exon e_start="3990" e_stop="3842"/>
            <exon e_start="3563" e_stop="3434"/>
            <exon e_start="3349" e_stop="3017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.000" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="4125" e_stop="4089" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4088" i_stop="3991" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3842" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3563" e_stop="3434" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3349" e_stop="3017" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4125" stop="4089"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3434"/>
              <exon start="3349" stop="3231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3530" stop="3434"/>
              <exon start="3349" stop="3017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220147" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTAAT</gDNA_template>
            <first_frame> V  N  L  G  *  E  G  A  V  S  R  F   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M  *  </first_frame>
            <second_frame>  *  T  W  A  R  K  G  Q  L  A  D  L  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  N </second_frame>
            <third_frame>   K  L  G  L  G  R  G  S  *  Q  I  C :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4121" stop="4089"/>
                    <exon start="3990" stop="3842"/>
                    <exon start="3563" stop="3434"/>
                    <exon start="3349" stop="3254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWARKGQLADLLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19140" PGL_stop="15503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19140" e_stop="18997"/>
            <exon e_start="17190" e_stop="16980"/>
            <exon e_start="15858" e_stop="15733"/>
            <exon e_start="15655" e_stop="15503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="19140" e_stop="18997" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="18996" i_stop="17191" i_length="1806"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17190" e_stop="16980" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16979" i_stop="15859" i_length="1121"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="15858" e_stop="15733" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15732" i_stop="15656" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15655" e_stop="15503" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19140" stop="18997"/>
              <exon start="17190" stop="16980"/>
              <exon start="15858" stop="15733"/>
              <exon start="15655" stop="15628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17095" stop="16980"/>
              <exon start="15858" stop="15733"/>
              <exon start="15655" stop="15503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA : GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG : GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG : GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</gDNA_template>
            <first_frame> T  A  L  S  S  L  C  P  F  I  F  F  P  F  *  I  L  H  I  N  C  R  L  R  H  G  R  R  F  I  A  T  C  Q  T  S  L  R  *  G  R  *  L  Q  *  S  S  R  :  A  E  A  C  K  V  P  K  G  *  E  G  K  A  G  R  Y  H  D  *  W  V  *  R  *  T  *  W  A  D  R  S  S  Q  C  S  Q  R  A  F  G  T  A  E  S  N  N  S  G  T  P  *  *  R  K  R  R  *  N  S  *  H  I  A  G  R  S  G  I  *   : G  K  *  N  I  H  *  *  W  D  C  N  R  T  F  *  S  E  *  R  E  R  R  R  L  F  *  C  I  R  K  L  C  *  I  F  K  *  K  *  D  K   : G  C  M  A  *  *  C  *  Y  *  E  N  I  F  W  E  E  S  Y  Q  D  I  K  *  R  *  D  S  R  P  Y  I  R  T  T  R  K  D  E  E  A  N  C  *  C  A  R  T  R  R  N  </first_frame>
            <second_frame>  P  L  S  L  H  F  A  P  S  F  F  F  L  S  E  S  F  I  S  I  A  D  Y  A  M  E  E  G  S  S  R  R  A  K  R  P  F  V  E  D  D  D  S  N  K  A  P  E :   Q  K  R  V  R  F  P  K  G  K  K  A  K  Q  G  D  T  T  I  D  G  C  E  D  K  P  S  G  R  T  D  P  R  N  A  A  K  E  R  S  A  R  R  N  Q  I  T  A  E  L  L  D  E  E  N  E  G  E  I  A  D  I  S  R  A  E  V  E  Y  E  :  E  N  E  T  F  I  D  D  G  I  A  I  E  P  F  N  L  N  K  E  R  E  E  G  Y  F  D  A  S  G  N  Y  V  E  Y  L  N  E  N  E  I  K  :  D  A  W  L  D  S  V  D  T  E  K  T  Y  S  G  K  K  A  I  K  I  S  N  E  D  E  I  Q  D  L  T  S  E  Q  L  G  K  M  K  R  R  I  A  D  V  L  E  P  G  E  T </second_frame>
            <third_frame>   R  S  L  F  T  L  P  L  H  F  F  S  F  L  N  P  S  Y  Q  L  P  I  T  P  W  K  K  V  H  R  D  V  P  N  V  P  S  L  R  T  M  T  P  I  K  L  Q   : S  R  S  V  *  G  S  Q  R  V  R  R  Q  S  R  A  I  P  R  L  M  G  V  K  I  N  L  V  G  G  Q  I  L  A  M  Q  P  K  S  V  R  H  G  G  I  K  *  Q  R  N  S  L  M  K  K  T  K  V  K  *  L  T  Y  R  G  Q  K  W  N  M  R :   K  M  K  H  S  L  M  M  G  L  Q  *  N  L  L  I  *  I  K  R  E  K  K  V  I  L  M  H  Q  E  T  M  L  N  I  *  M  K  M  R  *  R :   M  H  G  L  I  V  L  I  L  R  K  H  I  L  G  R  K  L  S  R  Y  Q  M  K  M  R  F  K  T  L  H  Q  N  N  *  E  R  *  R  G  E  L  L  M  C  S  N  Q  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19139" stop="18997"/>
                    <exon start="17190" stop="16980"/>
                    <exon start="15858" stop="15733"/>
                    <exon start="15655" stop="15503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSLHFAPSFFFLSESFISIADYAMEEGSSRRAKRPFVEDDDSNKAPEQKRVRFPKGKKAKQGDTTIDGCEDKPSGRTDPRNAAKERSARRNQITAELLDEENEGEIADISRAEVEYEENETFIDDGIAIEPFNLNKEREEGYFDASGNYVEYLNENEIKDAWLDSVDTEKTYSGKKAIKISNEDEIQDLTSEQLGKMKRRIADVLEPGET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45552" PGL_stop="42803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45552" e_stop="45363"/>
            <exon e_start="44819" e_stop="44754"/>
            <exon e_start="44335" e_stop="44261"/>
            <exon e_start="43811" e_stop="43688"/>
            <exon e_start="43601" e_stop="43479"/>
            <exon e_start="43325" e_stop="42803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45552" e_stop="45363" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44819" e_stop="44754" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.977">
            <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44335" e_stop="44261" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.620">
            <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43811" e_stop="43688" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43601" e_stop="43479" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43325" e_stop="42803" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45552" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45524" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45523" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45502" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45501" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45480" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45447" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45447" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45401" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="43198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45401" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="42910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540533" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44792" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="42833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546310" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43733" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="42803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369657" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43701" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="42838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43587" stop="43479"/>
              <exon start="43325" stop="42818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43195" stop="42910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234972" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTTCAGTACTGTGGAATTTGGGTTTTTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC : GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG : GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG : TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG : CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</gDNA_template>
            <first_frame> S  L  S  V  L  W  N  L  G  F  *  G  L  *  K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F   : R  F  V  G  G  S  N  I  G  E  S  I  Q  K  V  F  *  R  S  L  I  P   : G  E  K  V  I  I  K  L  I  I  N  Q  L  L  E  S  Q  K  Q  I  R  L  M  I  K   : G  H  Y  S  E  H  *  T  R  D  S  I  F  *  S  M  V  P  H  K  V  V  E  S  L  S  G  I  S  L  K  K  F  M  S  L  K  R  I  C  A  S :   V  L  S  L  P  *  N  L  S  L  E  I  F  H  I  H  I  L  L  E  M  P  L  W  V  I  W  S  C  N  P  L  K  T  R  K  S  L  Q  S  S :   A  S  S  S  N  P  K  L  L  Q  P  T  N  L  I  L  G  N  V  M  I  L  S  G  *  P  K  M  N  C  W  N  T  F  P  S  K  L  N  S  *  T  R  *  S  S  A  D  V  S  F  C  S  N  F  R  L  R  R  I  A  E  I  V  L  I  *  K  I  H  F  F  P  Q  M  Q  W  A  W  T  A  G  D  *  F  L  C  L  D  S  L  T  S  M  P  F  I  K  S  C  R  I  L  N  I  G  Y  L  N  Y  D  S  L  L  P  Q  L  S  P  I  L  F  V  R  S  Y  A  K  N  S  E  I  V  M  N  F  S  M  N  M  L  L  *  M  H  D  F  I  S  R  H  K  I  N  K  T  N  Y  M  L  Q  P  *  R  V  A  S  F  V  S  *  L  H  C </first_frame>
            <second_frame>  H  F  Q  Y  C  G  I  W  V  F  R  V  Y  E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  :  V  S  L  E  A  A  I  S  A  R  V  S  R  K  F  S  E  E  V  *  Y  Q  :  G  K  R  *  L  S  N  *  L  *  T  S  S  S  N  L  R  S  R  *  D  *  *  S  K  :  V  I  T  A  S  T  R  Q  E  T  L  S  S  S  P  W  Y  H  T  R  *  W  K  A  C  L  A  F  P  *  K  S  L  *  V  *  R  E  F  A  Q   : V  C  *  V  C  L  R  I  F  H  W  R  S  F  T  Y  I  F  C  W  K  C  P  Y  G  S  Y  G  H  A  T  H  *  R  Q  E  N  P  F  N  Q   : A  L  L  L  Q  I  P  S  Y  C  S  Q  Q  I  *  Y  *  E  M  *  *  F  C  L  G  D  Q  R  *  T  V  G  I  L  S  R  A  S  *  I  P  E  Q  D  D  H  Q  L  T  L  V  S  A  Q  T  S  G  F  V  G  *  R  K  *  F  *  S  E  K  S  I  S  S  R  K  C  N  G  L  G  L  L  E  T  D  F  Y  V  S  T  V  *  L  A  C  H  S  S  S  P  V  E  F  *  T  *  D  T  *  I  M  I  A  F  C  L  S  Y  H  Q  S  S  L  *  E  A  M  L  K  T  L  K  *  S  *  I  L  V  *  I  C  F  C  R  C  T  I  S  S  R  V  I  K  *  T  K  Q  I  T  C  C  S  L  N  E  L  R  A  L  F  H  S  C  I   </second_frame>
            <third_frame>   T  F  S  T  V  E  F  G  F  L  G  F  M  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S :   F  R  W  R  Q  Q  Y  R  R  E  Y  P  E  S  F  L  K  K  S  D  T  R :   G  K  G  D  Y  Q  I  D  Y  K  P  A  P  R  I  S  E  A  D  K  T  N  D  Q  R :   S  L  Q  R  A  L  D  K  R  L  Y  L  L  V  H  G  T  T  Q  G  S  G  K  P  V  W  H  F  P  E  K  V  Y  E  S  E  E  N  L  R  K  :  C  A  E  S  A  L  E  S  F  I  G  D  L  S  H  T  Y  F  V  G  N  A  P  M  G  H  M  V  M  Q  P  T  E  D  K  K  I  P  S  I  K  :  R  F  F  F  K  S  Q  V  I  A  A  N  K  F  D  I  R  K  C  D  D  F  V  W  V  T  K  D  E  L  L  E  Y  F  P  E  Q  A  E  F  L  N  K  M  I  I  S  *  R  *  F  L  L  K  L  Q  A  S  *  D  S  G  N  S  F  D  L  K  N  P  F  L  P  A  N  A  M  G  L  D  C  W  R  L  I  F  M  S  R  Q  S  D  *  H  A  I  H  Q  V  L  *  N  F  E  H  R  I  P  K  L  *  *  P  S  A  S  A  I  T  N  P  L  C  E  K  L  C  *  K  L  *  N  S  H  E  F  *  Y  E  Y  A  F  V  D  A  R  F  H  L  A  S  *  N  K  Q  N  K  L  H  V  A  A  L  T  S  C  E  L  C  F  I  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45550" stop="45363"/>
                    <exon start="44819" stop="44754"/>
                    <exon start="44335" stop="44261"/>
                    <exon start="43811" stop="43688"/>
                    <exon start="43601" stop="43479"/>
                    <exon start="43325" stop="43182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSTVEFGFLGFMKMQRCCSSAIGKRWFSSFNNDKIVASVLFERLPVVVPKIDPTVYAFQEFSFRWRQQYRREYPESFLKKSDTRGKGDYQIDYKPAPRISEADKTNDQRSLQRALDKRLYLLVHGTTQGSGKPVWHFPEKVYESEENLRKCAESALESFIGDLSHTYFVGNAPMGHMVMQPTEDKKIPSIKRFFFKSQVIAANKFDIRKCDDFVWVTKDELLEYFPEQAEFLNKMIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45512" e_stop="44980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="45512" e_stop="44980" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45512" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</gDNA_template>
            <first_frame> E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  V  S  F  F  F  F  S  V  Q  L  L  H  E  I  E  V  *  S  I  P  F  V  I  Q  L  Q  *  F  T  F  R  A  I  I  A  G  S  Y  N  R  M  I  K  T  F  T  S  V  D  F  F  F  R  F  S  E  T  V  L  V  N  *  G  L  R  G  T  L  I  C  L  L  E  K  N  S  A  K  K  Q  *  F  Y  A  L  V  R  S  N  Y  E  S  S  L  F  C  K  F  D  E  V  N  L  R  K  K  I  V  S  F  V  Q  N  F  A  V  V  S  N  A  *  E  I  M  C  N  E   </first_frame>
            <second_frame>  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S  *  V  F  S  F  F  L  F  N  C  C  T  K  S  K  C  N  Q  S  L  L  *  S  N  Y  N  D  L  L  L  E  R  *  L  L  V  R  I  I  E  *  S  K  H  L  L  V  L  I  F  F  F  A  F  Q  K  L  C  W  L  I  R  D  *  G  V  L  *  Y  V  C  L  R  K  I  V  L  K  N  N  N  F  M  P  *  S  G  Q  I  M  N  L  R  Y  F  V  S  L  M  K  *  I  Y  E  R  K  *  F  L  L  S  K  I  L  Q  W  F  L  M  L  R  R  *  C  V  M  K  </second_frame>
            <third_frame>   K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F  R  K  F  F  L  F  F  C  S  I  V  A  R  N  R  S  V  I  N  P  F  C  N  P  I  T  M  I  Y  F  *  S  D  N  C  W  F  V  *  *  N  D  Q  N  I  Y  *  C  *  F  F  F  S  L  F  R  N  C  A  G  *  L  G  I  K  G  Y  F  D  M  F  A  *  E  K  *  C  *  K  T  I  I  L  C  L  S  Q  V  K  L  *  I  F  A  I  L  *  V  *  *  S  K  S  T  K  E  N  S  F  F  C  P  K  F  C  S  G  F  *  C  L  G  D  N  V  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0127E11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47789" PGL_stop="48374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47789" e_stop="48374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="47789" e_stop="48374" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47789" stop="48374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGACCACTCTTGCAAGAAACCTCTACAAAAATCCTAATATATCCTCTCGCTTCCCTACACACGCTTGGATATGTGTTTCTCAAGAGTACAACACAATGGATCTTCTTAAGACTATCATAAAATCCATCCAAGGTCGCACCATGGGAACTCTAGGATTGTTGGAAAAGATGGATGAAAGAGATCTAGAAAACCACCTTCGTGATCTATTGAAAGAACGCAAATACCTTGTGGTGGTTGATGATGTCTGGCAAAGAGAAGCATGGGAGAGTTTGAAAAGAGCATTCCCGGATGACAAGAATGGCAGCAGAGTCATTATTACCACGCGCAAAGAGGATATCGCTGAAAGAGCAGCCGACAGAGGTTTTGTTCATAAACTTCGTTTCCTAAGTCAAGAAGAAAGTTGGGATCTCTTTCTTAGGAAACTACTTGATGTTCGAGCAATGGTTGCAGAAATGGAAAGTCTAGCTAAGGATATGGTGGAAAAGTGTAGAGGTTTACCTCTTGCAATTGTTGTATTGAGCGGACTACTTTCGCATAAAAAGGATCTAGATGAATGGCAAAAGGTGAAAGATCACCTTTGGAA</gDNA_template>
            <first_frame> A  R  P  L  L  Q  E  T  S  T  K  I  L  I  Y  P  L  A  S  L  H  T  L  G  Y  V  F  L  K  S  T  T  Q  W  I  F  L  R  L  S  *  N  P  S  K  V  A  P  W  E  L  *  D  C  W  K  R  W  M  K  E  I  *  K  T  T  F  V  I  Y  *  K  N  A  N  T  L  W  W  L  M  M  S  G  K  E  K  H  G  R  V  *  K  E  H  S  R  M  T  R  M  A  A  E  S  L  L  P  R  A  K  R  I  S  L  K  E  Q  P  T  E  V  L  F  I  N  F  V  S  *  V  K  K  K  V  G  I  S  F  L  G  N  Y  L  M  F  E  Q  W  L  Q  K  W  K  V  *  L  R  I  W  W  K  S  V  E  V  Y  L  L  Q  L  L  Y  *  A  D  Y  F  R  I  K  R  I  *  M  N  G  K  R  *  K  I  T  F  G  </first_frame>
            <second_frame>  Q  D  H  S  C  K  K  P  L  Q  K  S  *  Y  I  L  S  L  P  Y  T  R  L  D  M  C  F  S  R  V  Q  H  N  G  S  S  *  D  Y  H  K  I  H  P  R  S  H  H  G  N  S  R  I  V  G  K  D  G  *  K  R  S  R  K  P  P  S  *  S  I  E  R  T  Q  I  P  C  G  G  *  *  C  L  A  K  R  S  M  G  E  F  E  K  S  I  P  G  *  Q  E  W  Q  Q  S  H  Y  Y  H  A  Q  R  G  Y  R  *  K  S  S  R  Q  R  F  C  S  *  T  S  F  P  K  S  R  R  K  L  G  S  L  S  *  E  T  T  *  C  S  S  N  G  C  R  N  G  K  S  S  *  G  Y  G  G  K  V  *  R  F  T  S  C  N  C  C  I  E  R  T  T  F  A  *  K  G  S  R  *  M  A  K  G  E  R  S  P  L  E </second_frame>
            <third_frame>   K  T  T  L  A  R  N  L  Y  K  N  P  N  I  S  S  R  F  P  T  H  A  W  I  C  V  S  Q  E  Y  N  T  M  D  L  L  K  T  I  I  K  S  I  Q  G  R  T  M  G  T  L  G  L  L  E  K  M  D  E  R  D  L  E  N  H  L  R  D  L  L  K  E  R  K  Y  L  V  V  V  D  D  V  W  Q  R  E  A  W  E  S  L  K  R  A  F  P  D  D  K  N  G  S  R  V  I  I  T  T  R  K  E  D  I  A  E  R  A  A  D  R  G  F  V  H  K  L  R  F  L  S  Q  E  E  S  W  D  L  F  L  R  K  L  L  D  V  R  A  M  V  A  E  M  E  S  L  A  K  D  M  V  E  K  C  R  G  L  P  L  A  I  V  V  L  S  G  L  L  S  H  K  K  D  L  D  E  W  Q  K  V  K  D  H  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47791" stop="48372"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTTLARNLYKNPNISSRFPTHAWICVSQEYNTMDLLKTIIKSIQGRTMGTLGLLEKMDERDLENHLRDLLKERKYLVVVDDVWQREAWESLKRAFPDDKNGSRVIITTRKEDIAERAADRGFVHKLRFLSQEESWDLFLRKLLDVRAMVAEMESLAKDMVEKCRGLPLAIVVLSGLLSHKKDLDEWQKVKDHLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48514" PGL_stop="47872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48514" e_stop="47872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48514" e_stop="47872" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48514" stop="48119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="47872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTG</gDNA_template>
            <first_frame> L  C  F  Q  P  *  P  L  D  L  L  E  T  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  V  I  V  C  W  R  F  Q  Q  I  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  A  I  H  L  D  P  F  Y  A  K  V  V  R  S  I  Q  Q  L  Q  E  V  N  L  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  Q  P  L  L  E  H  Q  V  V  S  *  E  R  D  P  N  F  L  L  D  L  G  N  E  V  Y  E  Q  N  L  C  R  L  L  F  Q  R  Y  P  L  C  A  W  *  *  *  L  C  C  H  S  C  H  P  G  M  L  F  S  N  S  P  M  L  L  F  A  R  H  H  Q  P  P  Q  G  I  C  V  L  S  I  D  H  E  G  G  F  L  D  L  F  H  P  S  F  P  T  I  L  E  F  P  W  C  D  L  G  W  I  L  *  *  S  *  E  D  P  L  C  C  T  L  </first_frame>
            <second_frame>  C  V  F  S  L  D  H  S  I  F  W  K  H  T  K  V  E  K  T  L  L  E  L  N  *  Q  I  I  V  A  *  *  *  Y  V  G  D  F  N  R  F  I  F  F  N  A  L  P  K  V  I  F  H  L  L  P  F  I  *  I  L  F  M  R  K  *  S  A  Q  Y  N  N  C  K  R  *  T  S  T  L  F  H  H  I  L  S  *  T  F  H  F  C  N  H  C  S  N  I  K  *  F  P  K  K  E  I  P  T  F  F  L  T  *  E  T  K  F  M  N  K  T  S  V  G  C  S  F  S  D  I  L  F  A  R  G  N  N  D  S  A  A  I  L  V  I  R  E  C  S  F  Q  T  L  P  C  F  S  L  P  D  I  I  N  H  H  K  V  F  A  F  F  Q  *  I  T  K  V  V  F  *  I  S  F  I  H  L  F  Q  Q  S  *  S  S  H  G  A  T  L  D  G  F  Y  D  S  L  K  K  I  H  C  V  V  L  L </second_frame>
            <third_frame>   V  F  S  A  L  T  T  R  S  S  G  N  I  P  K  *  R  K  H  C  L  S  S  I  D  K  S  L  *  L  S  D  S  M  L  E  I  S  T  D  L  S  S  L  M  L  F  Q  R  *  S  F  T  F  C  H  S  S  R  S  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  A  T  I  A  R  T  S  S  S  F  L  R  K  R  S  Q  L  S  S  *  L  R  K  R  S  L  *  T  K  P  L  S  A  A  L  S  A  I  S  S  L  R  V  V  I  M  T  L  L  P  F  L  S  S  G  N  A  L  F  K  L  S  H  A  S  L  C  Q  T  S  S  T  T  T  R  Y  L  R  S  F  N  R  S  R  R  W  F  S  R  S  L  S  S  I  F  S  N  N  P  R  V  P  M  V  R  P  W  M  D  F  M  I  V  L  R  R  S  I  V  L  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="47874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKPLSAALSAISSLRVVIMTLLPFLSSGNALFKLSHASLCQTSSTTTRYLRSFNRSRRWFSRSLSSIFSNNPRVPMVRPWMDFMIVLRRSIVLYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60416" PGL_stop="57019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60416" e_stop="60382"/>
            <exon e_start="57679" e_stop="57019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60416" e_stop="60382" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="60381" i_stop="57680" i_length="2702"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57679" e_stop="57019" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60416" stop="60382"/>
              <exon start="57679" stop="57096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57580" stop="57019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57580" stop="57049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</gDNA_template>
            <first_frame> V  A  D  N  Q  W  I  F  T  Y  L  R :   V  Y  F  E  E  G  E  C  S  N  S  S  F  F  L  V  E  K  Y  I  S  R  *  W  K  L  K  L  R  P  F  T  T  T  Y  K  L  V  K  L  I  L  S  C  F  R  Y  N  F  *  L  E  Y  S  E  C  P  P  F  S  R  L  S  S  F  Y  S  T  R  N  S  S  A  R  V  V  L  Q  K  K  S  N  Q  N  N  G  *  S  G  C  S  *  Q  G  W  N  K  E  V  A  S  V  D  V  C  Y  I  C  C  *  S  S  K  G  K  S  Q  N  *  *  S  R  Q  *  *  Y  Y  R  E  G  D  C  H  S  E  T  E  K  *  K  D  *  G  *  K  G  N  I  H  *  G  V  V  H  S  A  S  N  M  P  N  N  K  K  K  Q  K  K  I  K  P  T  K  *  L  L  *  *  *  K  H  F  N  G  E  *  M  *  Q  Q  A  S  K  W  *  W  R  G  S  Y  V  E  E  T  E  T  E  N  E  E  F  Q  D  *  E  S  C  *  D  G </first_frame>
            <second_frame>  S  P  I  I  S  G  F  S  P  I  *   : G  C  T  L  R  K  V  N  A  Q  I  R  H  S  F  *  W  K  N  T  S  R  D  D  G  N  *  N  C  V  P  L  P  L  R  I  S  W  S  S  *  F  *  V  V  F  G  T  T  F  S  L  N  I  L  S  V  L  L  S  L  D  *  V  A  F  T  L  Q  E  I  H  L  L  E  *  F  C  K  R  K  A  I  K  I  M  D  D  R  V  V  L  D  K  G  G  T  R  K  L  P  Q  W  M  F  A  T  S  A  A  D  Q  V  K  E  K  A  K  T  D  K  V  D  N  N  N  T  T  E  K  E  I  V  T  Q  K  Q  K  N  R  R  I  K  D  K  K  E  T  F  T  E  E  S  S  T  Q  L  P  I  C  Q  T  T  K  R  S  R  R  K  L  N  L  P  N  D  Y  C  N  D  E  S  T  S  M  G  S  E  C  D  S  K  Q  A  S  G  D  G  E  V  P  M  L  R  R  Q  K  Q  K  T  K  N  S  K  T  E  R  V  A  E  M   </second_frame>
            <third_frame>   R  R  *  S  V  D  F  H  L  F  E  :  G  V  L  *  G  R  *  M  L  K  F  V  I  L  F  S  G  K  I  H  L  E  M  M  E  I  E  I  A  S  L  Y  H  Y  V  *  A  G  Q  A  D  F  E  L  F  S  V  Q  L  L  A  *  I  F  *  V  S  S  F  L  S  T  E  *  L  L  L  Y  K  K  F  I  C  *  S  S  S  A  K  E  K  Q  S  K  *  W  M  I  G  L  F  L  T  R  V  E  Q  G  S  C  L  S  G  C  L  L  H  L  L  L  I  K  *  R  K  K  P  K  L  I  K  *  T  I  I  I  L  Q  R  R  R  L  S  L  R  N  R  K  I  E  G  L  R  I  K  R  K  H  S  L  R  S  R  P  L  S  F  Q  Y  A  K  Q  Q  K  E  A  E  E  N  *  T  Y  Q  M  I  I  V  M  M  K  A  L  Q  W  G  V  N  V  T  A  S  K  Q  V  V  M  E  R  F  L  C  *  G  D  R  N  R  K  R  R  I  P  R  L  R  E  L  L  R  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57452" stop="57021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKRKAIKIMDDRVVLDKGGTRKLPQWMFATSAADQVKEKAKTDKVDNNNTTEKEIVTQKQKNRRIKDKKETFTEESSTQLPICQTTKRSRRKLNLPNDYCNDESTSMGSECDSKQASGDGEVPMLRRQKQKTKNSKTERVAEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="63536" PGL_stop="67974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63536" e_stop="64083"/>
            <exon e_start="67722" e_stop="67974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63536" e_stop="64083" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64084" i_stop="67721" i_length="3638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67722" e_stop="67974" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63536" stop="64083"/>
              <exon start="67722" stop="67927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63549" stop="64083"/>
              <exon start="67722" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539885" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63554" stop="63898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</gDNA_template>
            <first_frame> S  L  S  R  G  V  T  G  V  V  V  S  K  C  R  R  I  M  G  T  I  S  L  D  R  G  L  S  N  *  S  R  I  W  Q  K  M  I  Q  T  D  M  G  L  L  R  R  R  E  Q  R  W  R  G  S  L  P  S  K  L  M  R  N  *  C  V  L  N  W  H  S  V  L  F  V  R  M  I  L  R  W  G  Q  M  *  Y  R  C  L  V  S  M  F  I  I  R  I  V  S  Y  R  G  L  S  C  T  V  L  A  R  F  V  A  M  S  C  Q  R  M  S  L  R  M  R  T  G  K  E  T  M  M  G  T  R  A  G  M  V  L  L  L  E  V  G  D  Q  G  E  G  L  L  Q  Y  H  C  H  G  L  W  E  A  L  E  H  H  L  A  R  D  D  P  S  L  V  G  S  G  T  G  S  L  I  R :   W  Y  P  C  L  Q  V  V  S  W  M  T  K  L  E  E  L  L  G  R  *  L  E  N  A  T  K  V  K  D  *  V  S  S  L  K  T  *  I  Q  G  L  H  K  P  Q  I  V  L  Q  D  V  C  L  N  V  L  H  Q  M  S  K  V  F  I  Y  A  S  S  I  A  N  F  A  D  C  F  S  P  C  A  V  D  L </first_frame>
            <second_frame>  R  Y  R  G  G  *  R  G  *  W  S  P  N  A  G  E  L  W  G  L  F  H  W  T  G  V  *  A  I  D  P  E  F  G  R  K  *  S  K  P  I  W  D  S  S  G  V  E  S  S  G  G  G  A  P  Y  H  Q  S  *  *  G  I  D  A  F  *  T  G  T  V  C  C  L  *  G  *  F  *  D  G  V  R  C  D  T  D  A  L  *  A  C  L  S  *  G  L  Y  H  T  V  A  *  V  A  Q  F  L  P  G  L  S  L  *  V  A  N  G  *  A  *  E  *  E  Q  A  K  R  Q  *  W  G  L  E  R  G  W  F  C  F  W  K  W  G  I  R  E  K  V  Y  Y  N  I  I  A  M  A  F  G  K  L  W  S  I  I  *  P  G  M  I  R  V  S  W  A  A  E  Q  G  V  *  L   : G  G  I  L  A  C  R  L  Y  H  G  *  Q  S  W  R  S  C  W  V  D  N  *  K  M  L  Q  R  *  R  I  R  F  H  L  L  K  H  R  Y  R  V  Y  T  N  P  R  *  Y  C  K  M  F  V  *  M  F  C  I  R  C  P  K  F  S  F  M  L  H  Q  S  R  I  L  R  I  V  L  V  L  V  Q  L  I   </second_frame>
            <third_frame>   V  I  E  G  G  N  G  G  S  G  L  Q  M  P  A  N  Y  G  D  Y  F  I  G  P  G  F  E  Q  L  I  Q  N  L  A  E  N  D  P  N  R  Y  G  T  P  P  A  S  R  A  A  V  E  G  L  P  T  I  K  V  D  E  E  L  M  R  S  E  L  A  Q  C  A  V  C  K  D  D  F  E  M  G  S  D  V  I  Q  M  P  C  K  H  V  Y  H  K  D  C  I  I  P  W  L  E  L  H  S  S  C  P  V  C  R  Y  E  L  P  T  D  E  P  E  N  E  N  R  Q  R  D  N  D  G  D  S  S  G  D  G  S  A  S  G  S  G  G  S  G  R  R  F  T  T  I  S  L  P  W  P  L  G  S  F  G  A  S  S  S  Q  G  *  S  E  S  R  G  Q  R  N  R  E  S  N  *  :  V  V  S  L  L  A  G  C  I  M  D  D  K  V  G  G  V  V  G  *  I  I  R  K  C  Y  K  G  K  G  L  G  F  I  S  *  N  I  D  T  G  S  T  Q  T  P  D  S  I  A  R  C  L  S  E  C  F  A  S  D  V  Q  S  F  H  L  C  F  I  N  R  E  F  C  G  L  F  *  S  L  C  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63538" stop="64044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEGGNGGSGLQMPANYGDYFIGPGFEQLIQNLAENDPNRYGTPPASRAAVEGLPTIKVDEELMRSELAQCAVCKDDFEMGSDVIQMPCKHVYHKDCIIPWLELHSSCPVCRYELPTDEPENENRQRDNDGDSSGDGSASGSGGSGRRFTTISLPWPLGSFGASSSQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="78778" PGL_stop="79557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78778" e_stop="79557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="78778" e_stop="79557" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78778" stop="79258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78789" stop="79501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78818" stop="79557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79090" stop="79351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTTGTATTTTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATCTGTATCGGTACGGAACTCAACTGCA</gDNA_template>
            <first_frame> D  L  V  F  F  Y  I  F  V  V  L  G  L  C  F  F  F  F  C  F  H  E  S  S  F  F  Y  Y  L  K  L  Q  L  N  L  L  Y  *  F  V  K  V  F  F  L  L  L  F  G  V  L  F  N  *  A  L  F  S  R  A  W  *  I  C  C  F  S  S  L  L  G  F  A  Q  F  S  S  *  I  P  Y  W  C  S  I  W  T  *  F  S  I  I  C  C  F  L  F  V  G  V  C  S  I  Q  L  T  I  P  V  L  V  L  Y  F  G  F  D  F  R  L  L  L  G  F  V  C  *  *  I  L  V  I  F  H  H  Y  R  F  C  C  *  C  F  E  L  L  M  S  T  S  A  E  G  N  G  A  I  I  D  P  Q  R  Q  Q  Q  Q  A  P  T  G  V  G  T  N  G  A  L  T  V  K  K  P  P  V  K  D  R  H  S  K  V  D  G  R  G  R  R  I  R  M  P  I  V  C  A  A  R  V  F  Q  L  T  R  E  L  G  H  K  S  D  G  Q  T  I  E  W  L  L  R  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  S  F  S  T  V  S  V  S  V  R  N  S  T  A </first_frame>
            <second_frame>  I  L  Y  F  F  T  Y  L  L  F  W  G  S  V  F  F  F  F  A  S  M  N  R  A  F  S  I  T  *  N  F  N  *  T  C  F  I  D  L  *  K  F  F  F  F  F  C  L  G  F  C  L  I  E  L  C  F  P  E  L  G  E  F  V  V  F  L  L  C  W  G  L  L  N  S  A  H  K  S  H  I  G  A  L  F  G  P  D  F  Q  L  F  V  V  F  Y  L  L  G  F  A  Q  F  S  S  Q  F  P  Y  *  Y  S  I  L  D  L  I  F  D  Y  C  W  V  L  F  V  D  K  S  *  *  F  S  T  T  T  V  F  A  A  S  V  L  S  F  *  C  R  R  L  Q  R  E  M  E  L  *  L  I  L  R  G  N  N  N  R  R  L  L  G  L  V  Q  M  V  L  *  Q  *  K  N  R  R  *  K  T  G  I  V  R  L  M  V  E  E  D  V  *  G  C  Q  L  Y  V  R  Q  E  F  F  S  L  L  V  N  W  V  I  N  P  M  D  K  L  L  N  G  C  F  V  K  L  S  L  Q  L  *  L  L  L  V  L  V  L  F  L  L  V  S  R  L  Y  L  Y  R  Y  G  T  Q  L   </second_frame>
            <third_frame>   S  C  I  F  L  H  I  C  C  F  G  A  L  F  F  F  F  L  L  P  *  I  E  L  F  L  L  L  E  T  S  T  E  P  A  L  L  I  C  K  S  F  F  S  S  F  V  W  G  F  V  *  L  S  S  V  F  Q  S  L  V  N  L  L  F  F  F  F  V  G  V  C  S  I  Q  L  I  N  P  I  L  V  L  Y  L  D  L  I  F  N  Y  L  L  F  F  I  C  W  G  L  L  N  S  A  H  N  S  R  I  S  T  L  F  W  I  *  F  S  I  I  V  G  F  C  L  L  I  N  P  S  N  F  P  P  L  P  F  L  L  L  V  F  *  A  S  N  V  D  V  C  R  G  K  W  S  Y  N  *  S  S  E  A  T  T  T  G  A  Y  W  G  W  Y  K  W  C  F  N  S  E  K  T  A  G  K  R  P  A  *  *  G  *  W  *  R  K  T  Y  K  D  A  N  C  M  C  G  K  S  F  S  A  Y  S  *  I  G  S  *  I  R  W  T  N  Y  *  M  A  A  S  S  S  *  A  F  N  Y  S  C  Y  W  Y  W  Y  Y  S  C  *  F  L  D  C  I  C  I  G  T  E  L  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79201" stop="79557"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFELLMSTSAEGNGAIIDPQRQQQQAPTGVGTNGALTVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTVSVSVRNSTA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78899" stop="79108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFFFFCLGFCLIELCFPELGEFVVFLLCWGLLNSAHKSHIGALFGPDFQLFVVFYLLGFAQFSSQFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80536" PGL_stop="79710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80536" e_stop="79710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="80536" e_stop="79710" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80536" stop="80122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80529" stop="79710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80528" stop="80022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80504" stop="80108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTGAAGTCCATAGCAATCTTTTGAGTAGGAAAGTTTAAGCTCACAACTGATATAGTTTCAACAAATTACAGAATTGAATTCAACGGAAACCGCCATGGTTTCCTTACAAAACATTCATGTGGAACTACAGGTTTTCATAGTCCACACTGATCCCCTATTATATCTTGTTACAATGTGATCAAAGCAGCTTATTGTGAGGTCTGCAAACAACAGAACAAACCCCACCAAATTCATCATCACAAGCAACAACTTCCCCTGATGCTTGTGTTTCGTGTTATCGTCCCACAGCTTACAACACCAAAACTCGGTGAACGTAAACTCTTGACAAATGAGATATAGCAAACAAACCTAATCCTAGCAATAATTCATGAAATTGAACAAGCCCCTAGTTCATTTCTCACTCACTAGAACCTAGCAACAAATTTCTCATCTAACACAAACAAGAACATTAAAACACATTTATACGATATATTAACAACAATAACGATAACAATAACAATAACAATAATCATATCTTCAACGTCCGTCGTCGTCTCTTCTCCCGGAAGAGGGCTGTGGAGGACCTGATAGAGAAGCTAGCAAATTGAGATGCCCTTGAGTCATTGGTAAGTAATTCCCAACTCTAGCAGCTGAAGCCTCACCCATCTGCTGCTGAAAGAATCTAGAACTCTGCGAACTTAACGCTGCCGCGGCTGCAGCTGCTGCAGCCGCGGAGGTTGGCACCATCATTTCAGGTGGCGGTGCCGCCGCAAAGCTCCAAATTTGACCAAAATCAGGCCTAGCTGGAACAGCCCAAAACCCAGCTGTGGGACCCACAGCAGTA</gDNA_template>
            <first_frame> *  I  E  V  H  S  N  L  L  S  R  K  V  *  A  H  N  *  Y  S  F  N  K  L  Q  N  *  I  Q  R  K  P  P  W  F  P  Y  K  T  F  M  W  N  Y  R  F  S  *  S  T  L  I  P  Y  Y  I  L  L  Q  C  D  Q  S  S  L  L  *  G  L  Q  T  T  E  Q  T  P  P  N  S  S  S  Q  A  T  T  S  P  D  A  C  V  S  C  Y  R  P  T  A  Y  N  T  K  T  R  *  T  *  T  L  D  K  *  D  I  A  N  K  P  N  P  S  N  N  S  *  N  *  T  S  P  *  F  I  S  H  S  L  E  P  S  N  K  F  L  I  *  H  K  Q  E  H  *  N  T  F  I  R  Y  I  N  N  N  N  D  N  N  N  N  N  N  N  H  I  F  N  V  R  R  R  L  F  S  R  K  R  A  V  E  D  L  I  E  K  L  A  N  *  D  A  L  E  S  L  V  S  N  S  Q  L  *  Q  L  K  P  H  P  S  A  A  E  R  I  *  N  S  A  N  L  T  L  P  R  L  Q  L  L  Q  P  R  R  L  A  P  S  F  Q  V  A  V  P  P  Q  S  S  K  F  D  Q  N  Q  A  *  L  E  Q  P  K  T  Q  L  W  D  P  Q  Q   </first_frame>
            <second_frame>  K  L  K  S  I  A  I  F  *  V  G  K  F  K  L  T  T  D  I  V  S  T  N  Y  R  I  E  F  N  G  N  R  H  G  F  L  T  K  H  S  C  G  T  T  G  F  H  S  P  H  *  S  P  I  I  S  C  Y  N  V  I  K  A  A  Y  C  E  V  C  K  Q  Q  N  K  P  H  Q  I  H  H  H  K  Q  Q  L  P  L  M  L  V  F  R  V  I  V  P  Q  L  T  T  P  K  L  G  E  R  K  L  L  T  N  E  I  *  Q  T  N  L  I  L  A  I  I  H  E  I  E  Q  A  P  S  S  F  L  T  H  *  N  L  A  T  N  F  S  S  N  T  N  K  N  I  K  T  H  L  Y  D  I  L  T  T  I  T  I  T  I  T  I  T  I  I  I  S  S  T  S  V  V  V  S  S  P  G  R  G  L  W  R  T  *  *  R  S  *  Q  I  E  M  P  L  S  H  W  *  V  I  P  N  S  S  S  *  S  L  T  H  L  L  L  K  E  S  R  T  L  R  T  *  R  C  R  G  C  S  C  C  S  R  G  G  W  H  H  H  F  R  W  R  C  R  R  K  A  P  N  L  T  K  I  R  P  S  W  N  S  P  K  P  S  C  G  T  H  S  S  </second_frame>
            <third_frame>   N  *  S  P  *  Q  S  F  E  *  E  S  L  S  S  Q  L  I  *  F  Q  Q  I  T  E  L  N  S  T  E  T  A  M  V  S  L  Q  N  I  H  V  E  L  Q  V  F  I  V  H  T  D  P  L  L  Y  L  V  T  M  *  S  K  Q  L  I  V  R  S  A  N  N  R  T  N  P  T  K  F  I  I  T  S  N  N  F  P  *  C  L  C  F  V  L  S  S  H  S  L  Q  H  Q  N  S  V  N  V  N  S  *  Q  M  R  Y  S  K  Q  T  *  S  *  Q  *  F  M  K  L  N  K  P  L  V  H  F  S  L  T  R  T  *  Q  Q  I  S  H  L  T  Q  T  R  T  L  K  H  I  Y  T  I  Y  *  Q  Q  *  R  *  Q  *  Q  *  Q  *  S  Y  L  Q  R  P  S  S  S  L  L  P  E  E  G  C  G  G  P  D  R  E  A  S  K  L  R  C  P  *  V  I  G  K  *  F  P  T  L  A  A  E  A  S  P  I  C  C  *  K  N  L  E  L  C  E  L  N  A  A  A  A  A  A  A  A  A  A  E  V  G  T  I  I  S  G  G  G  A  A  A  K  L  Q  I  *  P  K  S  G  L  A  G  T  A  Q  N  P  A  V  G  P  T  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0127E11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79801" PGL_stop="81213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79801" e_stop="80548"/>
            <exon e_start="81196" e_stop="81213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.435" e_score="0.963"/>
          <exon-only e_score="0.611"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="79801" e_stop="80548" e_length="748"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.435">
            <gDNA_intron_boundary i_start="80549" i_stop="81195" i_length="647"/>
          </intron>
          <exon e_serial="2" e_score="0.611">
            <gDNA_exon_boundary e_start="81196" e_stop="81213" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79801" stop="80548"/>
              <exon start="81196" stop="81213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79822" stop="80288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79871" stop="80489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACTCAACTTA : AAGATAAAGCATATAGAT</gDNA_template>
            <first_frame> E  M  M  V  P  T  S  A  A  A  A  A  A  A  A  A  A  L  S  S  Q  S  S  R  F  F  Q  Q  Q  M  G  E  A  S  A  A  R  V  G  N  Y  L  P  M  T  Q  G  H  L  N  L  L  A  S  L  S  G  P  P  Q  P  S  S  G  R  R  D  D  D  G  R  *  R  Y  D  Y  C  Y  C  Y  C  Y  R  Y  C  C  *  Y  I  V  *  M  C  F  N  V  L  V  C  V  R  *  E  I  C  C  *  V  L  V  S  E  K  *  T  R  G  L  F  N  F  M  N  Y  C  *  D  *  V  C  L  L  Y  L  I  C  Q  E  F  T  F  T  E  F  W  C  C  K  L  W  D  D  N  T  K  H  K  H  Q  G  K  L  L  L  V  M  M  N  L  V  G  F  V  L  L  F  A  D  L  T  I  S  C  F  D  H  I  V  T  R  Y  N  R  G  S  V  W  T  M  K  T  C  S  S  T  *  M  F  C  K  E  T  M  A  V  S  V  E  F  N  S  V  I  C  *  N  Y  I  S  C  E  L  K  L  S  Y  S  K  D  C  Y  G  L  Q  F  I  T  Q  L   : K  D  K  A  Y  R  </first_frame>
            <second_frame>  K  *  W  C  Q  P  P  R  L  Q  Q  L  Q  P  R  Q  R  *  V  R  R  V  L  D  S  F  S  S  R  W  V  R  L  Q  L  L  E  L  G  I  T  Y  Q  *  L  K  G  I  S  I  C  *  L  L  Y  Q  V  L  H  S  P  L  P  G  E  E  T  T  T  D  V  E  D  M  I  I  V  I  V  I  V  I  V  I  V  V  N  I  S  Y  K  C  V  L  M  F  L  F  V  L  D  E  K  F  V  A  R  F  *  *  V  R  N  E  L  G  A  C  S  I  S  *  I  I  A  R  I  R  F  V  C  Y  I  S  F  V  K  S  L  R  S  P  S  F  G  V  V  S  C  G  T  I  T  R  N  T  S  I  R  G  S  C  C  L  *  *  *  I  W  W  G  L  F  C  C  L  Q  T  S  Q  *  A  A  L  I  T  L  *  Q  D  I  I  G  D  Q  C  G  L  *  K  P  V  V  P  H  E  C  F  V  R  K  P  W  R  F  P  L  N  S  I  L  *  F  V  E  T  I  S  V  V  S  L  N  F  P  T  Q  K  I  A  M  D  F  N  L  L  L  N  L  :  K  I  K  H  I  D </second_frame>
            <third_frame>   N  D  G  A  N  L  R  G  C  S  S  C  S  R  G  S  V  K  F  A  E  F  *  I  L  S  A  A  D  G  *  G  F  S  C  *  S  W  E  L  L  T  N  D  S  R  A  S  Q  F  A  S  F  S  I  R  S  S  T  A  L  F  R  E  K  R  R  R  R  T  L  K  I  *  L  L  L  L  L  L  L  S  L  L  L  L  I  Y  R  I  N  V  F  *  C  S  C  L  C  *  M  R  N  L  L  L  G  S  S  E  *  E  M  N  *  G  L  V  Q  F  H  E  L  L  L  G  L  G  L  F  A  I  S  H  L  S  R  V  Y  V  H  R  V  L  V  L  *  A  V  G  R  *  H  E  T  Q  A  S  G  E  V  V  A  C  D  D  E  F  G  G  V  C  S  V  V  C  R  P  H  N  K  L  L  *  S  H  C  N  K  I  *  *  G  I  S  V  D  Y  E  N  L  *  F  H  M  N  V  L  *  G  N  H  G  G  F  R  *  I  Q  F  C  N  L  L  K  L  Y  Q  L  *  A  *  T  F  L  L  K  R  L  L  W  T  S  I  Y  Y  S  T  * :   R  *  S  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80185" stop="80418"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLYLICQEFTFTEFWCCKLWDDNTKHKHQGKLLLVMMNLVGFVLLFADLTISCFDHIVTRYNRGSVWTMKTCSST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79801" stop="80016"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMMVPTSAAAAAAAAAALSSQSSRFFQQQMGEASAARVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84224" PGL_stop="86697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84990" e_stop="85865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="84990" e_stop="85865" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84990" stop="85865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84991" stop="85544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</gDNA_template>
            <first_frame> E  T  V  C  Y  Q  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F  G  M  L  Y  F  Y  V  F  L  P  S  S  D  F  A  N  T  T  C  *  P  T  L  F  T  H  D  W  Y  S  F  S  V  D  Q  R  R  K  S  R  K  L  S  F  V  T  L  T  I  I  L  T  S  Y  Y  G  A  P  S  V  S  A  V  T  R  P  T  Y  A  *  C  A  I  Q  N  G  D  S  K  Y  N  D  *  R  Y  F  F  C  C  F  F  L  R  L  N  K  T  L  C  M  I  C  F  *  I  L  *  F  C  S  L  F  E  I  H  F  R  K  S  Y  F  T  M  C  N  S  E  W  R  V  V  E  Q  I  Y  H  F  G  Q  I  R  S  F  S  Y  E  T  V  L  F  V  S  K  A  L  T  C  *  L  N  G  I  M  T  *  F  I  S  D  L  Y  I  K  H  N  I  A  R  Y  N  I  C  *  E  A  C  Y  G  I  Y  C  S  D  I  C  *  D  A  *  H  E  F  V  F  I  C  S  M  F  L  F  R  E  I  I  W  *  V  G  D  F  A  E  Q  E  V  T  K  L  R  N  V  S  Y  I  C  F  D  K  V  Y  L  P  F  F  I  L  Q  L  F  V  S </first_frame>
            <second_frame>  R  L  F  V  I  S  V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  V  C  Y  T  S  M  S  F  Y  R  P  P  I  L  Q  T  P  H  A  N  Q  L  Y  S  L  M  T  G  I  V  F  L  W  I  R  E  E  N  R  E  N  S  L  L  L  L  L  L  L  Y  *  Q  V  T  M  A  L  L  Q  Y  L  L  *  L  D  Q  H  M  H  N  V  Q  F  R  M  A  I  P  S  I  T  I  S  D  I  S  F  V  A  S  F  *  G  *  T  K  L  C  V  *  Y  A  S  E  S  C  S  F  V  L  S  L  K  Y  I  L  E  S  R  I  L  L  C  A  I  Q  N  G  A  *  *  S  R  Y  I  T  L  V  K  Y  D  P  S  P  M  K  L  Y  C  L  F  L  K  L  *  H  V  N  *  M  V  L  *  H  D  L  Y  L  I  C  I  L  S  T  T  L  L  D  T  T  S  A  R  K  H  V  M  A  Y  I  V  R  I  F  V  K  M  H  D  M  N  S  C  S  S  V  L  C  F  C  S  E  K  *  S  G  K  L  V  T  L  L  S  K  K  L  Q  N  *  E  M  *  A  T  F  A  L  T  K  F  I  Y  L  F  S  F  C  S  F  L  F   </second_frame>
            <third_frame>   D  C  L  L  S  V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  W  Y  V  I  L  L  C  L  F  T  V  L  R  F  C  K  H  H  M  L  T  N  S  I  H  S  *  L  V  *  F  F  C  G  S  E  K  K  I  A  K  T  L  F  C  Y  S  Y  Y  Y  I  N  K  L  L  W  R  S  F  S  I  C  C  N  *  T  N  I  C  I  M  C  N  S  E  W  R  F  Q  V  *  R  L  A  I  F  L  L  L  L  L  F  E  A  E  Q  N  F  V  Y  D  M  L  L  N  P  V  V  L  F  S  L  *  N  T  F  *  K  V  V  F  Y  Y  V  Q  F  R  M  A  R  S  R  A  D  I  S  L  W  S  N  T  I  L  L  L  *  N  C  T  V  C  F  *  S  F  D  M  L  I  E  W  Y  Y  D  M  I  Y  I  *  F  V  Y  *  A  Q  H  C  *  I  Q  H  L  L  G  S  M  L  W  H  I  L  F  G  Y  L  L  R  C  M  T  *  I  R  V  H  L  F  Y  V  F  V  Q  R  N  N  L  V  S  W  *  L  C  *  A  R  S  Y  K  T  E  K  C  K  L  H  L  L  *  Q  S  L  F  T  F  F  H  S  A  A  F  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84991" stop="85263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLFVISVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLVCYTSMSFYRPPILQTPHANQLYSLMTGIVFLWIREENRENSLLLLLLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84224" e_stop="84439"/>
            <exon e_start="85008" e_stop="85110"/>
            <exon e_start="85854" e_stop="85925"/>
            <exon e_start="86273" e_stop="86478"/>
            <exon e_start="86592" e_stop="86697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="84224" e_stop="84439" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85008" e_stop="85110" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.971">
            <gDNA_intron_boundary i_start="85111" i_stop="85853" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85854" e_stop="85925" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="85926" i_stop="86272" i_length="347"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="86273" e_stop="86478" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86479" i_stop="86591" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="86592" e_stop="86697" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84224" stop="84439"/>
              <exon start="85008" stop="85110"/>
              <exon start="85854" stop="85925"/>
              <exon start="86273" stop="86478"/>
              <exon start="86592" stop="86697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</gDNA_template>
            <first_frame> *  D  F  R  T  *  K  N  N  N  F  Q  K  L  I  P  N  S  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F   : A  F  C  F  *  *  N  I  Y  A  T  S  I  P  L  Q  Q  H  L  W  I  C  R  S   : G  C  S  R  *  *  K  Q  C  L  V  L  H  T  Y  I  Q  D  F  V  Q  G  W  W  L  W  D  F  R  A  I  I  F  Q  L  N  R  L  C  E  T  S  S  A  T  V  W  G  T  A  T  G  R  P  S  P  S  C  T  N  S  S  *  *  D  D  *  T  C  :  L  C  R  S  Q  *  S  N  E  N  L  L  A  A  A  Y  S  R  V  A  T  *  A  S  F  I  P  I  T  T  C  L  K  L  N  </first_frame>
            <second_frame>  K  I  L  E  R  R  K  T  T  I  F  K  S  *  S  Q  I  P  K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  :  L  F  V  S  D  E  I  F  T  Q  P  V  F  H  C  N  N  I  S  G  F  V  D  P  :  V  V  P  D  N  E  N  S  A  L  Y  S  T  H  T  F  K  I  L  F  K  D  G  G  C  G  T  F  V  P  L  F  F  N  L  I  A  S  V  R  R  A  Q  Q  Q  S  G  V  Q  P  R  A  D  P  L  Q  A  A  Q  T  P  V  D  E  M  I  R  H  A :   Y  V  D  P  N  D  P  T  K  I  F  L  Q  Q  P  T  P  E  S  Q  L  R  R  R  S  Y  Q  S  Q  P  A  *  N  S  I </second_frame>
            <third_frame>   R  F  *  N  V  E  K  Q  Q  F  S  K  A  N  P  K  F  Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  C :   F  L  F  L  M  K  Y  L  R  N  Q  Y  S  T  A  T  T  S  L  D  L  *  I  R :   L  F  Q  I  M  K  T  V  P  C  T  P  H  I  H  S  R  F  C  S  R  M  V  V  V  G  L  S  C  H  Y  F  S  T  *  S  P  L  *  D  E  L  S  N  S  L  G  Y  S  H  G  Q  T  L  S  K  L  H  K  L  Q  L  M  R  *  L  D  M   : L  M  S  I  P  M  I  Q  R  K  S  S  C  S  S  L  L  Q  S  R  N  L  G  V  V  H  T  N  H  N  L  L  K  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84267" stop="84439"/>
                    <exon start="85008" stop="85110"/>
                    <exon start="85854" stop="85925"/>
                    <exon start="86273" stop="86478"/>
                    <exon start="86592" stop="86688"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIPKIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLLFVSDEIFTQPVFHCNNISGFVDPVVPDNENSALYSTHTFKILFKDGGCGTFVPLFFNLIASVRRAQQQSGVQPRADPLQAAQTPVDEMIRHAYVDPNDPTKIFLQQPTPESQLRRRSYQSQPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="90861" PGL_stop="86931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90841" e_stop="90574"/>
            <exon e_start="89207" e_stop="89034"/>
            <exon e_start="88261" e_stop="87000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90841" e_stop="90574" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89207" e_stop="89034" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="88261" e_stop="87000" e_length="1262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90841" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90820" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90818" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90816" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90805" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90802" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90802" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90800" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90794" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90792" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90789" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90775" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90663" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90626" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90622" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90600" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89152" stop="89034"/>
              <exon start="88261" stop="87841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89086" stop="89034"/>
              <exon start="88261" stop="87655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89076" stop="89034"/>
              <exon start="88261" stop="87698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88219" stop="87679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88192" stop="87297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88185" stop="87346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88180" stop="87897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88179" stop="87398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88046" stop="87170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88002" stop="87581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87801" stop="87251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87557" stop="87041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87462" stop="87074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229048" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87366" stop="87081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228760" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</gDNA_template>
            <first_frame> K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  I  V  Y  S  E  T  C  C  I  I  L  P  P  V  F  K  A  F  F  G  H  L  S  T  S  V  L  Y  I  N  K  R  S  L  G  V </first_frame>
            <second_frame>  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I  L  F  I  Q  K  H  A  A  L  F  Y  L  L  Y  L  K  H  F  L  V  T  *  V  H  L  Y  Y  I  L  T  R  G  V  L  E   </second_frame>
            <third_frame>   N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T  Y  C  L  F  R  N  M  L  H  Y  F  T  S  C  I  *  S  I  F  W  S  L  E  Y  I  C  T  I  Y  *  Q  E  E  S  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90840" stop="90574"/>
                    <exon start="89207" stop="89034"/>
                    <exon start="88261" stop="87194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1506</number_coding_nucleotides>
                  <number_encoded_amino_acids>502</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90861" e_stop="90574"/>
            <exon e_start="89207" e_stop="89034"/>
            <exon e_start="88261" e_stop="87108"/>
            <exon e_start="86951" e_stop="86931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.316" e_score="0.999"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90861" e_stop="90574" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89207" e_stop="89034" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="88261" e_stop="87108" e_length="1154"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.316">
            <gDNA_intron_boundary i_start="87107" i_stop="86952" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="86951" e_stop="86931" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90861" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87108"/>
              <exon start="86951" stop="86931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90841" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90820" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90818" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90816" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90802" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90802" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90800" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90794" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90792" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90789" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90775" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90663" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90626" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90622" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90600" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="88033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89152" stop="89034"/>
              <exon start="88261" stop="87841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89086" stop="89034"/>
              <exon start="88261" stop="87655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89076" stop="89034"/>
              <exon start="88261" stop="87698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88219" stop="87679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88192" stop="87297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88185" stop="87346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88180" stop="87897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88179" stop="87398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88046" stop="87170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88002" stop="87581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87801" stop="87251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268562" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACAT : AAAACTGGAAATAATCACTAA</gDNA_template>
            <first_frame> H  K  K  K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I :   K  L  E  I  I  T   </first_frame>
            <second_frame>  T  K  K  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T   : *  N  W  K  *  S  L  </second_frame>
            <third_frame>   Q  K  K  N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  :  K  T  G  N  N  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90861" stop="90574"/>
                    <exon start="89207" stop="89034"/>
                    <exon start="88261" stop="87194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKKKIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="87110" PGL_stop="87896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87110" e_stop="87896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87110" e_stop="87896" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87110" stop="87896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87122" stop="87668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACAAAATCACCTTTTATTCAACAGAACAAAAACTTAAAAAGGAAAATCTCTCCATCTAGCATACAAAAAGAAATATAGTGGTTAAATTTGCTTCAAAACTTTTTCAGCTGCAGCTACAGTCCTTTGAATATCCTCTGGAGTGTGTGCTAAGCTAGTAAATCCAGCCTCAAACTGTGATGGTGCAAAGTAAACACCTTCCTCCAGCATCCCTCTATAGAATCTGCCAAATTTTTCTGTATCACTCTTCTTTGCATCCGAAAAGTTATAGATGGGACCATCCGCGAAGAAGAAGCCAAACATCCCCCTTATGGAGCCACCACACATTGCATGACCGGTCTTCTTTCCAGCATCCAAGATTCCTTGTGTAAGTTCCGCGGTGATCTTGTCCAAGTGTTCGTATGTTCCCTGTCCTTGTAACCGCTTAAGCGTGTGAATTCCAGCAGTCATGGCCAATGGGTTTCCACTTAGGGTGCCAGCTTGATACATTGGTCCTGCAGGTGCTACCATCTCCATTATATCCCGTCTTCCTCCGTAAGCACCTACTGGCAAGCCACCGCCAATAATCTTCCCGAGTGTTGTCAAATCTGGAGTTATTCCAAAATACTCTTGAGCACCGCCATATGCCAATCTAAATCCAGTCATGACTTCGTCGAAAATAAGAAGTGCATCATTCTCTTTGGTGATCTTGCGAATGGCAGCAAGAAATTCTAGCTTAGGTGGGATGAAGCCAGCATTTCCGACTACAGGCTCGAGAATTACAGCGGCTATTTCTCCTTTGTGCTCC</gDNA_template>
            <first_frame> V  T  K  S  P  F  I  Q  Q  N  K  N  L  K  R  K  I  S  P  S  S  I  Q  K  E  I  *  W  L  N  L  L  Q  N  F  F  S  C  S  Y  S  P  L  N  I  L  W  S  V  C  *  A  S  K  S  S  L  K  L  *  W  C  K  V  N  T  F  L  Q  H  P  S  I  E  S  A  K  F  F  C  I  T  L  L  C  I  R  K  V  I  D  G  T  I  R  E  E  E  A  K  H  P  P  Y  G  A  T  T  H  C  M  T  G  L  L  S  S  I  Q  D  S  L  C  K  F  R  G  D  L  V  Q  V  F  V  C  S  L  S  L  *  P  L  K  R  V  N  S  S  S  H  G  Q  W  V  S  T  *  G  A  S  L  I  H  W  S  C  R  C  Y  H  L  H  Y  I  P  S  S  S  V  S  T  Y  W  Q  A  T  A  N  N  L  P  E  C  C  Q  I  W  S  Y  S  K  I  L  L  S  T  A  I  C  Q  S  K  S  S  H  D  F  V  E  N  K  K  C  I  I  L  F  G  D  L  A  N  G  S  K  K  F  *  L  R  W  D  E  A  S  I  S  D  Y  R  L  E  N  Y  S  G  Y  F  S  F  V  L  </first_frame>
            <second_frame>  L  Q  N  H  L  L  F  N  R  T  K  T  *  K  G  K  S  L  H  L  A  Y  K  K  K  Y  S  G  *  I  C  F  K  T  F  S  A  A  A  T  V  L  *  I  S  S  G  V  C  A  K  L  V  N  P  A  S  N  C  D  G  A  K  *  T  P  S  S  S  I  P  L  *  N  L  P  N  F  S  V  S  L  F  F  A  S  E  K  L  *  M  G  P  S  A  K  K  K  P  N  I  P  L  M  E  P  P  H  I  A  *  P  V  F  F  P  A  S  K  I  P  C  V  S  S  A  V  I  L  S  K  C  S  Y  V  P  C  P  C  N  R  L  S  V  *  I  P  A  V  M  A  N  G  F  P  L  R  V  P  A  *  Y  I  G  P  A  G  A  T  I  S  I  I  S  R  L  P  P  *  A  P  T  G  K  P  P  P  I  I  F  P  S  V  V  K  S  G  V  I  P  K  Y  S  *  A  P  P  Y  A  N  L  N  P  V  M  T  S  S  K  I  R  S  A  S  F  S  L  V  I  L  R  M  A  A  R  N  S  S  L  G  G  M  K  P  A  F  P  T  T  G  S  R  I  T  A  A  I  S  P  L  C  S </second_frame>
            <third_frame>   Y  K  I  T  F  Y  S  T  E  Q  K  L  K  K  E  N  L  S  I  *  H  T  K  R  N  I  V  V  K  F  A  S  K  L  F  Q  L  Q  L  Q  S  F  E  Y  P  L  E  C  V  L  S  *  *  I  Q  P  Q  T  V  M  V  Q  S  K  H  L  P  P  A  S  L  Y  R  I  C  Q  I  F  L  Y  H  S  S  L  H  P  K  S  Y  R  W  D  H  P  R  R  R  S  Q  T  S  P  L  W  S  H  H  T  L  H  D  R  S  S  F  Q  H  P  R  F  L  V  *  V  P  R  *  S  C  P  S  V  R  M  F  P  V  L  V  T  A  *  A  C  E  F  Q  Q  S  W  P  M  G  F  H  L  G  C  Q  L  D  T  L  V  L  Q  V  L  P  S  P  L  Y  P  V  F  L  R  K  H  L  L  A  S  H  R  Q  *  S  S  R  V  L  S  N  L  E  L  F  Q  N  T  L  E  H  R  H  M  P  I  *  I  Q  S  *  L  R  R  K  *  E  V  H  H  S  L  W  *  S  C  E  W  Q  Q  E  I  L  A  *  V  G  *  S  Q  H  F  R  L  Q  A  R  E  L  Q  R  L  F  L  L  C  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87581" stop="87823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GASLIHWSCRCYHLHYIPSSSVSTYWQATANNLPECCQIWSYSKILLSTAICQSKSSHDFVENKKCIILFGDLANGSKKF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87290" stop="87529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCKVNTFLQHPSIESAKFFCITLLCIRKVIDGTIREEEAKHPPYGATTHCMTGLLSSIQDSLCKFRGDLVQVFVCSLSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87271" stop="87480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQPQTVMVQSKHLPPASLYRICQIFLYHSSLHPKSYRWDHPRRRSQTSPLWSHHTLHDRSSFQHPRFLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 145 chains have been computed
$ 
$ memory statistics:
$ 407856 bytes spliced alignments in total
$ 98 spliced alignments have been stored
$ 4161 bytes was the average size of a spliced alignment
$ 22176 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1705 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 163 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 04:05:10
-->
