<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:27:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306814" ref_strand="+" ref_description="SGN-E306814 [cLEY-11-I10]">
      <seq>gctgatggatcgaggtcaagggaagaagcttttgatggtcacatggcaattggcagggttttgtatgatcaacatttgtttaaggaagcactggtgagctttaagagagcttgtgagttgcagcctgctgatgttaggccacatttcagggctggcaattgtttgtatgtgctcgggagacatagtgagtcgaaagaggagttcttgctggcattggaggctgctgaagctggtggcagtcagtgggcttatttgcttcctcagattcatgtgaatttgggaattgctcttgaaggcgaaggtatggttataagtgcctgtgaacattatagagaggctgctattttgtgtccaactcattttagagctttgaaacttttgggtagtgcactttttggcgtgggtgagtataaggcagctgttaaggcattataagaggccatttatatgaagagtgactatgctgatgcacattgtgatcttgcttctgcattgcacgcaatgggtgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="1036" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="736" g_stop="221" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E306814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="736" e_stop="221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGGATCGAGGTCAAGGGAAGAAGCTTTTGATGGTCACATGGCAATTGGCAGGGTTTTGTATGATCAACATTTGTTTAAGGAAGCACTGGTGAGCTTTAAGAGAGCTTGTGAGTTGCAGCCTGCTGATGTTAGGCCACATTTCAGGGCTGGCAATTGTTTGTATGTGCTCGGGAGACATAGTGAGTCGAAAGAGGAGTTCTTGCTGGCATTGGAGGCTGCTGAAGCTGGTGGCAGTCAGTGGGCTTATTTGCTTCCTCAGATTCATGTGAATTTGGGAATTGCTCTTGAAGGCGAAGGTATGGTTATAAGTGCCTGTGAACATTATAGAGAGGCTGCTATTTTGTGTCCAACTCATTTTAGAGCTTTGAAACTTTTGGGTAGTGCACTTTTTGGCGTGGGTGAGTATAAGGCAGCTGTTAAGGCATTAGAAGAGGCCATTTATATGAAGAGTGACTATGCTGATGCACATTGTGATCTTGCTTCTGCATTGCACGCAATGGGTGATGATGAT</genome_strand>
        <mrna_strand>GCTGATGGATCGAGGTCAAGGGAAGAAGCTTTTGATGGTCACATGGCAATTGGCAGGGTTTTGTATGATCAACATTTGTTTAAGGAAGCACTGGTGAGCTTTAAGAGAGCTTGTGAGTTGCAGCCTGCTGATGTTAGGCCACATTTCAGGGCTGGCAATTGTTTGTATGTGCTCGGGAGACATAGTGAGTCGAAAGAGGAGTTCTTGCTGGCATTGGAGGCTGCTGAAGCTGGTGGCAGTCAGTGGGCTTATTTGCTTCCTCAGATTCATGTGAATTTGGGAATTGCTCTTGAAGGCGAAGGTATGGTTATAAGTGCCTGTGAACATTATAGAGAGGCTGCTATTTTGTGTCCAACTCATTTTAGAGCTTTGAAACTTTTGGGTAGTGCACTTTTTGGCGTGGGTGAGTATAAGGCAGCTGTTAAGGCATTATAAGAGGCCATTTATATGAAGAGTGACTATGCTGATGCACATTGTGATCTTGCTTCTGCATTGCACGCAATGGGTGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395551" ref_strand="+" ref_description="SGN-E395551 [TUS-43-G10]">
      <seq>cttcttcctctttgccctttttctctttctccagatccaaattatagcaaaaatttaatcttttttcaatacccatttttctatttctccaattttccttaatttatcttctttttgaaaccctaaccctaaaaatcccatctttttttgctttcagtataaaaccctaatttttacaggttctctaccttttatccgccaagtttgaatcttgattgaagctttcgacacccaataacgtgaaaggttagaatttgtacttgaattggtgttaatttttgggaaatggctacgaggggaagcagatcggagaaggtgaagaggatttttcagcaatttgatggtaatcatgatggaggtcttaatcgagaggaaatggcagctttggtggttgctgtaaaccctagggttaagtttagcgaagagcaaattaatgctattctcgatgaggttttccgtacgtacagcgagtttattgatggtgaaaaggggcttaattatgagggacttttgcgtacgtatgatgatggtgctggggatgttgatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="1981" stop="833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1681" g_stop="1133" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E395551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1681" e_stop="1133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCTCTTTGCCCTTTTTCTCTTTCTCCAGATCCAAATTATAGCAAAAATTTAATCTTTTTTCAATACCCATTTTTCTATTTCTCCAATTTTCCTTAATTTATCTTCTTTTTGAAACCCTAACCCTAAAAATCCCATCTTTTTTTGCTTTCAGTATAAAACCCTAATTTTTACAGGTTCTCTACCTTTTATCCGCCAAGTTTGAATCTTGATTGAAGCTTTCGACACCCAATAACGTGAAAGGTTAGAATTTGTACTTGAATTGGTGTTAATTTTTGGGAAATGGCTACGAGGGGAAGCAGATCGGAGAAGGTGAAGAGGATTTTTCAGCAATTTGATGGTAATCATGATGGAGGTCTTAATCGAGAGGAAATGGCAGCTTTGGTGGTTGCTGTAAACCCTAGGGTTAAGTTTAGCGAAGAGCAAATTAATGCTATTCTCGATGAGGTTTTCCGTACGTACAGCGAGTTTATTGATGGTGAAAAGGGGCTTACTTATGAGGGACTTTTGCGTACGTATGATGATGGTGCTGGTGATGTTGATCGT</genome_strand>
        <mrna_strand>CTTCTTCCTCTTTGCCCTTTTTCTCTTTCTCCAGATCCAAATTATAGCAAAAATTTAATCTTTTTTCAATACCCATTTTTCTATTTCTCCAATTTTCCTTAATTTATCTTCTTTTTGAAACCCTAACCCTAAAAATCCCATCTTTTTTTGCTTTCAGTATAAAACCCTAATTTTTACAGGTTCTCTACCTTTTATCCGCCAAGTTTGAATCTTGATTGAAGCTTTCGACACCCAATAACGTGAAAGGTTAGAATTTGTACTTGAATTGGTGTTAATTTTTGGGAAATGGCTACGAGGGGAAGCAGATCGGAGAAGGTGAAGAGGATTTTTCAGCAATTTGATGGTAATCATGATGGAGGTCTTAATCGAGAGGAAATGGCAGCTTTGGTGGTTGCTGTAAACCCTAGGGTTAAGTTTAGCGAAGAGCAAATTAATGCTATTCTCGATGAGGTTTTCCGTACGTACAGCGAGTTTATTGATGGTGAAAAGGGGCTTAATTATGAGGGACTTTTGCGTACGTATGATGATGGTGCTGGGGATGTTGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361015" ref_strand="+" ref_description="SGN-E361015 [cLPP-13-H8]">
      <seq>gggaggaggcatctcaatatggtgatgatcacggatcagttgcacatgaagagaaagagaagatttttgttgcagttagattgagacctttgaatgagagggagattacatgtaacgatgtctcggattgggaatgcatcaataacaccacaattttttataaaaattctatgtcagagcgttcattgtttccaactgcttgtgcatatgaccgagtatttgggtatgattgctccacaaggcaggtgtatgaggaagccgccaaaggagttgctctttcagttcttagtggtattaattcaagtatcttcgcatatggacagacaagtagtgggaaaacgtatactatgtctggaatcaccgaatacacgttagcagatatatatgatcatatatgcaggaacgtagaccgagaatttacactaaaattctctgccatggagatatacaatgaagttgttagagaccttctaaccccagaggacactccacttagactcctcgatgatccagagagaggaactgtagttgaaaaacttacagaggtaacactgaaggactggaaccatctaaaagaactgctgtcagtatgtgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="10108" stop="11671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10408" g_stop="10617" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10618" i_stop="10713" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10714" g_stop="10803" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="300" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10804" i_stop="10886" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10887" g_stop="10987" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="401" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10988" i_stop="11090" i_length="103">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11091" g_stop="11204" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="515" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11205" i_stop="11287" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11288" g_stop="11369" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="597" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E361015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10408" e_stop="10617"/>
          <exon e_start="10714" e_stop="10803"/>
          <exon e_start="10887" e_stop="10987"/>
          <exon e_start="11091" e_stop="11204"/>
          <exon e_start="11288" e_stop="11369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGGAGGCATCTCAATATGGTGATGATCACGGATCAGTTGCACATGAAGAGAAAGAGAAGATTTTTGTTGCAGTTAGATTGAGACCTTTGAATGAGAGGGAGATTACATGTAACGATGTCTCGGATTGGGAATGCATCAATAACACCACAATTTTTTATAAAAATTCTATGTCAGAGCGTTCATTGTTTCCAACTGCTTGTGCATATGGTAAGCTTCTTCACATATTCATTTTCCTTTGCGTTGTGTTTTTATTTTTTGAATTGAAAAGATTCCTCCTTAAAATTGGTGTATGAAATTGAACAGACCGAGTATTTGGGTATGATTGCTCCACAAGGCAGGTGTATGAGGAAGCCGCCAAAGGAGTTGCTCTTTCAGTTCTTAGTGGTATTAATTGTAAGTACTAGCCCTTGTTCACGGTCCATTTTCTGCACCTACATAATGATGTTACAGTAATAACGTATGAAATGTCTTTGCAGCAAGTATCTTCGCATATGGACAGACAAGTAGTGGGAAAACGTATACTATGTCTGGAATCACCGAATACACATTAGCAGATATATATGATCATATATGCAGGGTGGGTAAACCTTTCCTATTCTTCAATGCAATTAATTTATGCTGTACAAAATTCAGAGTGTCTGATGCTTTTAAGGTGCCTTTTTATTTTCAAAAACTTTTAGAACGTAGACCGAGAATTTACACTAAAATTCTCTGCCATGGAGATATACAATGAAGTTGTTAGAGACCTTCTAACCCCAGAGGACACTCCACTTAGACTCCTCGATGATCCAGAGGTGAATATATGTTTTAAGCATGATCAAGTTTTGTTTTATTCACAGACAATATTATGCAAGTAAGTAACCTCTTTCATTTACAGAGAGGAACTGTAGTTGAAAAACTTACAGAGATAACACTGAAGGACTGGAACCATCTAAAAGAACTGCTGTCAGTATGTGAAG</genome_strand>
        <mrna_strand>GGGAGGAGGCATCTCAATATGGTGATGATCACGGATCAGTTGCACATGAAGAGAAAGAGAAGATTTTTGTTGCAGTTAGATTGAGACCTTTGAATGAGAGGGAGATTACATGTAACGATGTCTCGGATTGGGAATGCATCAATAACACCACAATTTTTTATAAAAATTCTATGTCAGAGCGTTCATTGTTTCCAACTGCTTGTGCATATG................................................................................................ACCGAGTATTTGGGTATGATTGCTCCACAAGGCAGGTGTATGAGGAAGCCGCCAAAGGAGTTGCTCTTTCAGTTCTTAGTGGTATTAATT...................................................................................CAAGTATCTTCGCATATGGACAGACAAGTAGTGGGAAAACGTATACTATGTCTGGAATCACCGAATACACGTTAGCAGATATATATGATCATATATGCAGG.......................................................................................................AACGTAGACCGAGAATTTACACTAAAATTCTCTGCCATGGAGATATACAATGAAGTTGTTAGAGACCTTCTAACCCCAGAGGACACTCCACTTAGACTCCTCGATGATCCAGAG...................................................................................AGAGGAACTGTAGTTGAAAAACTTACAGAGGTAACACTGAAGGACTGGAACCATCTAAAAGAACTGCTGTCAGTATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326002" ref_strand="+" ref_description="SGN-E326002 [cTOD-1-O21]">
      <seq>ccggagctttctgctgataatgttaagttgttatcaaaagaacacaaccgcagttttacgattgaagtaaagctcaaaatgtcaggtgaagactgtgagaagatttgtgctgaggaaccaaaaatgtccggtgaagatagcataaaaatttgtgcagagggtgaggttgccaaatctgtgcctgagaagcaatcaggggataatttggtccaggatgatgagcacacctccaaggacttgggaaactttgccgctgattccttaaattcagagaatgaatcagaattatctccttccagacagtggatggaatttgagaaacaaaggccagagataatagaactatggaatgcatgcaatgtgccccttgttcacagaacatactttttcctactcttcaaaggggatccaactgactcagtttacatggaggtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="13304" stop="14490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13604" g_stop="13810" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13811" i_stop="13958" i_length="148">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13959" g_stop="14190" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="439" r_length="232" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E326002" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13604" e_stop="13810"/>
          <exon e_start="13959" e_stop="14190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGCTTTCTGCTGATAATGTTAAGTTGTTATCAAAAGAACACAACCGCAGTTTTACGATTGAAGTAAAGCTCAAAATGTCAGGTGAAGACTGTGAGAAGATTTGTGCTGAGGAACCAAAAATGTCCGGTGAAGATAGCATAAAAATTTGTGCAGAGGGTGAGGTTGCCAAATCTGTGCCTGAGAAGCAATCAGGGGATAATTTGGTAAGTAACTTTCTGCTTGAGATTAATAGCTAGAACTGCACATCTCTTCAACACAAAAAAATTCTTAAATGTGCTTCTAATGTATATCGATATACATACTTTGATAAGTTCGTATAGAGATCATAAGAAATTAACTTTATCTTGTTAGGTCCAGGATGATGAGCACACCTCCAAGGACTTGGGAAACTTTGCCGCTGATTCCTTAAATTCAGAGAATGAATCAGAATTATCTCCTTCCAGACAGTGGATGGAATTTGAGAAACAAAGGCAAGAGATAATAGAACTATGGAATGCATGCAATGTGCCCCTTGTTCACAGAACATACTTTTTCCTACTCTTCAAAGGGGATCCAACTGACTCAGTTTACATGGAGGTGGAGC</genome_strand>
        <mrna_strand>CCGGAGCTTTCTGCTGATAATGTTAAGTTGTTATCAAAAGAACACAACCGCAGTTTTACGATTGAAGTAAAGCTCAAAATGTCAGGTGAAGACTGTGAGAAGATTTGTGCTGAGGAACCAAAAATGTCCGGTGAAGATAGCATAAAAATTTGTGCAGAGGGTGAGGTTGCCAAATCTGTGCCTGAGAAGCAATCAGGGGATAATTTG....................................................................................................................................................GTCCAGGATGATGAGCACACCTCCAAGGACTTGGGAAACTTTGCCGCTGATTCCTTAAATTCAGAGAATGAATCAGAATTATCTCCTTCCAGACAGTGGATGGAATTTGAGAAACAAAGGCCAGAGATAATAGAACTATGGAATGCATGCAATGTGCCCCTTGTTCACAGAACATACTTTTTCCTACTCTTCAAAGGGGATCCAACTGACTCAGTTTACATGGAGGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736670" ref_strand="+" ref_description="SGN-E736670 [LC06CG07]">
      <seq>ggaggcattaacacacctaagctttggcatttgtactgcacgcctttcaccaccatttcaactagcaggcggcgccggtaagaagccgccgagactcaatgctgttaccggaggagccagtagtgttaccggtggaacaagtagtgtaccgacgaacttctccgccagtaaatgggcggatcgtcttctcgccgatttccaattccttccttcccccaccaccacctccgactcatcggatttccagaattcaacttctacaacctctgttacgactattcctcctcccgttgctccttcagaccgccacattttaatgcctatagacttttatagagtgcttggtgctgaagctcacttcctcggtgatggtatcaggagatgctacgatgctagaattactaagccgccgcagtacgggtacagtcaagaggcattgattggccgacgacagattcttcaagctgcttgtgaaacccttgctgactctacctctcgtagagaatacaatcaaggcctcgctcagcatgagttcgatactattctaactccggtcccctgggataaagttccgggagcattgtgtgttttgcaagaagctggtgagactggagtagttcttcagattggggaaagcttgctgaaagagcggttgccaaagtcattcaagcaagatgtggtcttagctatggcactcgcatatgttgaccattcgcgagatgcgatggcactttcgcctcctgattttgtttcaggttgtgaactgcttgaaagagcacttaagctgttgcaggaagaaggtgcaagtaatcttgcccctgatctgcaatcccagatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="20680" stop="17976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20380" g_stop="19813" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19812" i_stop="18981" i_length="832">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18980" g_stop="18756" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="793" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18755" i_stop="18325" i_length="431">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18324" g_stop="18276" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="842" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E736670" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20380" e_stop="19813"/>
          <exon e_start="18980" e_stop="18756"/>
          <exon e_start="18324" e_stop="18276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCATTAACACACCTAAGCTTTGGCATTTGTACTGCACGCCTTTCACCACCATATCAACTAGCCGGCGGCGTCGGTAAGAAGCCGCCGAGACTCAATGCTGTTACCGGAGGAGCTAGTAGTGTTACCGGTGGAACAAGTAGTGTACCGACGAACTTCTCCGCCAGTAAATGGGCGGATCGTCTTCTCGCCGATTTCCAATTCCTTCCTTCCACCACCACCACCTCCGACTCATCGGATTTCCAGAATTCAACTTCTACAACCTCTGTTACGACTATTCCTCCTCCCGTTGCTCCTTCAGACCGCCACATTTCAATGCCTATAGACTTTTATAGAGTGCTTGGTGCTGAAGCTCACTTCCTCGGTGATGGTATCAGGAGATGCTACGATGCTAGAATTACTAAGCCGCCGCAGTACGGGTACAGTCAAGAGGCATTGATTGGCCGACGACAGATTCTTCAAGCTGCTTGTGAAACCCTTGCTGACTCTACCTCTCGTAGAGAATACAATCAAGGCCTCGCTCAGCATGAGTTCGATACTATTCTAACTCCGGTCCCCTGGGATAAAGTACCATTTCAATTACTCCACTTTTTTATTTACTGCCCACATTCTTAATTGAATAATTTTTTAGCTAATTGAAAAGTGCTATAGGGAGTTTGAAACTTGGAATTAAGTTTATCTGTATTAACTTATGCTCCCCAAGTAAGTCAGGTTGATCTTAGATGCCTTTTTTCAATTATATACTATCTGTATAATCTAGCTAATAATTGTAGCATGTTGCTTATCATATTTTACAAATTACCAATTGCAAGTAGCAGTGAATAAATTGTAGAAGTTTGTAGTTTTAAGTGCATCTAGGCTTAGTTCAAGTCGCCAAGGTTGAAGGACTTGTAATTTGGGTCATAGGTTCTAGCTATGCAAACTAAGCCTAGTATTTAAGCGGAGAAGGATAGAAGGACGGGCCCTTTTTCCTGAGTTTTGAAGGCTGCGGTTGTTCCTAAGGATTGGGCCAAAACTATTCCGCGGTTATAAGATAAGATTTTATATAGTGAGAACAACATGATCAATGTAGTTCATTGAGTTGTTGCTTGTTGCTTACCTTATTTTCTAGATTACCAGACCACGCTTACTATTGATAAAGGTAATTGTTTAAGTTATGCAAATTAAAGAAAAGGTTTTGTACATGACCAGTGTAATTTAACCCGTTGTAGCATGTCACCTACCTATTTTCCAGATTACCATCCTACACTTACTACTAAGAATTACTTGTAATTAGTTCTCAATACATAACTAACTGATAGTGTAGTAAAATTTATACCCGGGTTGGTTATAAAACTTAAATATTCTAAAAGTTGTTGTGGGATGCAAAGAATTTAAAAGAATGTCATGGCTTTTACAGGTTCCGGGAGCATTGTGTGTTTTGCAAGAAGCTGGTGAGACTGGAGTAGTTCTTCAGATTGGGGAAAGCTTGCTGAAAGAGCGGTTGCCAAAGTCATTCAAGCAAGATGTGGTCTTAGCTATGGCACTCGCATATGTTGACCATTCGCGAGATGCGATGGCACTTTCGCCTCCTGATTTTGTTCAAGGTTGTGAACTGCTTGAAAGAGCACTTAAGCTGTTGCAGGTATAGTTACTTCTGATGATATGAGTATGTTAGAGTGAATGTGATGGTATATTTGAAATTCTATAAAGGGAACACACATGGAAATAACTGTTTTCTATAGTTTATGCACTATGACACAGCTTTTGCCAGCTGCAAATGTCTGTTGACAAATGACTTTATTAATGGAAGAGGGTTTGTATCATTGTACTGATTGCTAACTTCATTTTGATTTACCTATTAATGAGTATAGTGCTCTTCTTGGTCATCCATGATTCACTTAAGACATCTCTGTTTGTTTGTTTTTGGTAATGTATGTGTGTGGGGTATATGTGACTGTGCACTTTTTCTTTACCTCTCGCCTGCTTTAATGCTGATGCATGCCTTTTTTGGGTCGAATTGTAAGCTTACAGTGAAGAGCAAATAATGAGGAACTTTCTTCCTTCCTTTTCCAGGAAGAAGGTGCAAGTAATCTTGCCCTTGATCTGCAATCCCAGATAGATG</genome_strand>
        <mrna_strand>GGAGGCATTAACACACCTAAGCTTTGGCATTTGTACTGCACGCCTTTCACCACCATTTCAACTAGCAGGCGGCGCCGGTAAGAAGCCGCCGAGACTCAATGCTGTTACCGGAGGAGCCAGTAGTGTTACCGGTGGAACAAGTAGTGTACCGACGAACTTCTCCGCCAGTAAATGGGCGGATCGTCTTCTCGCCGATTTCCAATTCCTTCCTTCCCCCACCACCACCTCCGACTCATCGGATTTCCAGAATTCAACTTCTACAACCTCTGTTACGACTATTCCTCCTCCCGTTGCTCCTTCAGACCGCCACATTTTAATGCCTATAGACTTTTATAGAGTGCTTGGTGCTGAAGCTCACTTCCTCGGTGATGGTATCAGGAGATGCTACGATGCTAGAATTACTAAGCCGCCGCAGTACGGGTACAGTCAAGAGGCATTGATTGGCCGACGACAGATTCTTCAAGCTGCTTGTGAAACCCTTGCTGACTCTACCTCTCGTAGAGAATACAATCAAGGCCTCGCTCAGCATGAGTTCGATACTATTCTAACTCCGGTCCCCTGGGATAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGGGAGCATTGTGTGTTTTGCAAGAAGCTGGTGAGACTGGAGTAGTTCTTCAGATTGGGGAAAGCTTGCTGAAAGAGCGGTTGCCAAAGTCATTCAAGCAAGATGTGGTCTTAGCTATGGCACTCGCATATGTTGACCATTCGCGAGATGCGATGGCACTTTCGCCTCCTGATTTTGTTTCAGGTTGTGAACTGCTTGAAAGAGCACTTAAGCTGTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGGTGCAAGTAATCTTGCCCCTGATCTGCAATCCCAGATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736824" ref_strand="+" ref_description="SGN-E736824 [LC07BG08]">
      <seq>cggttagaattaacacacctaagctttggcatttgtactgcacctctttcaccaccatttcaactagcaggcggcgccggtaagaagccgccgagactcaatgctgttaccggaggacccagtagtgttaccggtggaacaagtagtgtaccgacgaacttctccgccagtaaatgggcggatcgtcttctcgccgatttccaattccttccttcccccaccaccacctccgactcatcggatttccagaattcaacttctacaacctctgttacgactattcctcctcccgttgctccttcagaccgccaaattttaatgcctatatacttttatagagtgcttggtgctgaaactcacttcctcggtgatggtatcaggagatgctactatgctacaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="20676" stop="19678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20382" g_stop="19978" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E736824" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20382" e_stop="19978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGGCATTAACACACCTAAGCTTTGGCATTTGTACTGCACGCCTTTCACCACCATATCAACTAGCCGGCGGCGTCGGTAAGAAGCCGCCGAGACTCAATGCTGTTACCGGAGGAGCTAGTAGTGTTACCGGTGGAACAAGTAGTGTACCGACGAACTTCTCCGCCAGTAAATGGGCGGATCGTCTTCTCGCCGATTTCCAATTCCTTCCTTCCACCACCACCACCTCCGACTCATCGGATTTCCAGAATTCAACTTCTACAACCTCTGTTACGACTATTCCTCCTCCCGTTGCTCCTTCAGACCGCCACATTTCAATGCCTATAGACTTTTATAGAGTGCTTGGTGCTGAAGCTCACTTCCTCGGTGATGGTATCAGGAGATGCTACGATGCTAGAATTACT</genome_strand>
        <mrna_strand>CGGTTAGAATTAACACACCTAAGCTTTGGCATTTGTACTGCACCTCTTTCACCACCATTTCAACTAGCAGGCGGCGCCGGTAAGAAGCCGCCGAGACTCAATGCTGTTACCGGAGGACCCAGTAGTGTTACCGGTGGAACAAGTAGTGTACCGACGAACTTCTCCGCCAGTAAATGGGCGGATCGTCTTCTCGCCGATTTCCAATTCCTTCCTTCCCCCACCACCACCTCCGACTCATCGGATTTCCAGAATTCAACTTCTACAACCTCTGTTACGACTATTCCTCCTCCCGTTGCTCCTTCAGACCGCCAAATTTTAATGCCTATATACTTTTATAGAGTGCTTGGTGCTGAAACTCACTTCCTCGGTGATGGTATCAGGAGATGCTACTATGCTACAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378494" ref_strand="+" ref_description="SGN-E378494 [TUS-16-C7]">
      <seq>aacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcactaaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtnaaatgttccttgtattaactttactttaagctttcatttgtttctgtatatcttttccattttacatctactgatttctgctacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36624" stop="33932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36324" g_stop="36196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="415" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34227" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="844" r_length="429" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E378494" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36324" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTACATCTACTGATTTCTGCTACTTAGACCTTG</genome_strand>
        <mrna_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCACTAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTNAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTACATCTACTGATTTCTGCTACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391468" ref_strand="+" ref_description="SGN-E391468 [TUS-16-C7](-)">
      <seq>tgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatttagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtatatcttttccattttacatctactgatttctgctacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36406" stop="33932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36196" g_stop="36196" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="287" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34234" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="709" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E391468" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36196" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTACATCTACTGATTTCTGCTACTTA</genome_strand>
        <mrna_strand>T.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATTTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTACATCTACTGATTTCTGCTACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556126" ref_strand="+" ref_description="SGN-E556126 [cTSD-2-H6]">
      <seq>gtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggattaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctgggatggctatcagaatcgttggtgatgctggtgttagagctaatgcacagcagccgaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtatatcttttccattttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36332" stop="32982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36032" g_stop="35821" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34256" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="613" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="614" polyA_stop="630"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E556126" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36032" e_stop="35821"/>
          <exon e_start="34655" e_stop="34256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGG-TTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTAC</genome_strand>
        <mrna_strand>GTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGATTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGGATGGCTATCAGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCGAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553247" ref_strand="+" ref_description="SGN-E553247 [cTSB-3-H6]">
      <seq>gtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtatatcttttccattttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36332" stop="32982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36032" g_stop="35821" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34256" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="612" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="630"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E553247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36032" e_stop="35821"/>
          <exon e_start="34655" e_stop="34256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTAC</genome_strand>
        <mrna_strand>GTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344872" ref_strand="+" ref_description="SGN-E344872 [cTOF-21-F21]">
      <seq>actcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaatacattttggttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaaatatcaaacttttcggatatttttgaaagacaaataatgaattgctgtnaaatgttccttgtattaactttactttaagcttcatttgtttctgtaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36621" stop="33971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36321" g_stop="36196" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="412" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34274" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="790" r_length="378" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E344872" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36321" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</genome_strand>
        <mrna_strand>ACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAA-TACATTTTGGTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAA-ATATCAAACTTTTCGGATATTTTTGAAAGACAAATAA-TGAATTGCTGTNAAATGTTCCTTGTATTAACTTTACTTTAAGC-TTCATTTGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264142" ref_strand="+" ref_description="SGN-E264142 [cLEG-64-F23]">
      <seq>atcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36615" stop="33971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36315" g_stop="36196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="406" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34274" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="788" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E264142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36315" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</genome_strand>
        <mrna_strand>ATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390889" ref_strand="+" ref_description="SGN-E390889 [TUS-47-O20](-)">
      <seq>caaatcacttcattttcccaatttgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgtttttttgcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36611" stop="33971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36311" g_stop="36196" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="402" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34274" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="784" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="795"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E390889" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36311" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</genome_strand>
        <mrna_strand>CAAATCACTTCATTTTCCCAATTTGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTTGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296927" ref_strand="+" ref_description="SGN-E296927 [cLET-26-M18]">
      <seq>gtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36181" stop="33971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35881" g_stop="35821" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34274" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="443" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="458"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E296927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35881" e_stop="35821"/>
          <exon e_start="34655" e_stop="34274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</genome_strand>
        <mrna_strand>GTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308260" ref_strand="+" ref_description="SGN-E308260 [cLEZ-6-I15]">
      <seq>aagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttcatttgtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36326" stop="33975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36026" g_stop="35821" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34275" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="587" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E308260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36026" e_stop="35821"/>
          <exon e_start="34655" e_stop="34275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTG</genome_strand>
        <mrna_strand>AAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537475" ref_strand="+" ref_description="SGN-E537475 [TUS-56-B14](-)">
      <seq>tgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaattaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36309" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36009" g_stop="35821" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34278" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="567" r_length="378" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E537475" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36009" e_stop="35821"/>
          <exon e_start="34655" e_stop="34278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTT</genome_strand>
        <mrna_strand>TGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAATTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720560" ref_strand="+" ref_description="SGN-E720560 [FC11AF10]">
      <seq>tggcggccaaatcggccgaattgaatcgattccataaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcaatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattggattgctgtaaaatgttccttgtattaatttatattgactttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36642" stop="33984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36338" g_stop="36196" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="165" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="451" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34283" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="822" r_length="371" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E720560" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36338" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATTCCAATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATT</genome_strand>
        <mrna_strand>AATCGATTCC-ATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCAATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGGATTGCTGTAAAATGTTCCTTGTATTAA-TTTATATTGA-CTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261632" ref_strand="+" ref_description="SGN-E261632 [cLEG-61-C17]">
      <seq>cagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacatttttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagatccctcaataaaaaatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36618" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36318" g_stop="36196" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="409" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34285" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="779" r_length="370" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E261632" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36318" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACA-TTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCA</genome_strand>
        <mrna_strand>CAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGA-TCCCTCAATAAA-AAATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537477" ref_strand="+" ref_description="SGN-E537477 [TUS-56-B14]">
      <seq>tcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagancaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36614" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36314" g_stop="36196" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="405" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34286" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="775" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E537477" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36314" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTC</genome_strand>
        <mrna_strand>TCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGANCAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352132" ref_strand="+" ref_description="SGN-E352132 [cTOS-13-E13]">
      <seq>tctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36199" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35899" g_stop="35821" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34286" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="449" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E352132" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35899" e_stop="35821"/>
          <exon e_start="34655" e_stop="34286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTC</genome_strand>
        <mrna_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356654" ref_strand="+" ref_description="SGN-E356654 [cTOS-21-N16]">
      <seq>tctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36199" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35899" g_stop="35821" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34286" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="449" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E356654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35899" e_stop="35821"/>
          <exon e_start="34655" e_stop="34286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTC</genome_strand>
        <mrna_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356917" ref_strand="+" ref_description="SGN-E356917 [cTOS-22-H17]">
      <seq>tctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36199" stop="33985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35899" g_stop="35821" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34286" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="449" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E356917" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35899" e_stop="35821"/>
          <exon e_start="34655" e_stop="34286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTC</genome_strand>
        <mrna_strand>TCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318852" ref_strand="+" ref_description="SGN-E318852 [cTOB-11-A23]">
      <seq>tcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctatagcatagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgagattatgtatttgattgcttggcaaagaagattccctcaatgaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36189" stop="33987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35889" g_stop="35821" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34287" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="438" r_length="369" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E318852" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35889" e_stop="35821"/>
          <exon e_start="34655" e_stop="34287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTT</genome_strand>
        <mrna_strand>TCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTATAGCATAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGAGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATGAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538118" ref_strand="+" ref_description="SGN-E538118 [TUS-57-B11](-)">
      <seq>ggcactgcagctaccttagtcttctcctgtatgcgtgcagcttatggtacaccgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggccggagttttgagtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttatagctaatgcacagcagccaaagctttttgttggaatgattctgatcgttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatcttcgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcgggtatttttgaaagacaaataattgaattgctgtaaaatgttccttgtattaactttactttaagctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36523" stop="33989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36223" g_stop="36196" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="314" r_length="286" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34292" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="678" r_length="364" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="692"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E538118" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36223" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAA</genome_strand>
        <mrna_strand>GGCACTGCAGCTACCTTAGTCTTCTCCT.........................................................................................GTATGCGTGCAGCTTATGGTACACCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCCGGAGTTTTGAGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCGTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTCGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGGTATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726993" ref_strand="+" ref_description="SGN-E726993 [LA13BF07]">
      <seq>tactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattggattgctgtaaaatgttccttgtattaatttatattgactttactttaagctttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36621" stop="33982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36322" g_stop="36196" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="413" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34303" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="766" r_length="353" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="794" polyA_stop="804"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E726993" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36322" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAA</genome_strand>
        <mrna_strand>TACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGGATTGCTGTAAAATGTTCCTTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734229" ref_strand="+" ref_description="SGN-E734229 [LB12AE04]">
      <seq>caaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattggattgctgtaaaatgttccttgtattaatttatattgactttactttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36611" stop="32982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36311" g_stop="36196" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="402" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34303" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="755" r_length="353" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="794"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E734229" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36311" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAA</genome_strand>
        <mrna_strand>CAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGGATTGCTGTAAAATGTTCCTTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262312" ref_strand="-" ref_description="SGN-E262312 [cLEG-56-L1]">
      <seq>ggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaatngttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36401" stop="34018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36101" g_stop="35821" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34315" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="622" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E262312" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262312" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36101" e_stop="35821"/>
          <exon e_start="34655" e_stop="34315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGT</genome_strand>
        <mrna_strand>GGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATNGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692060" ref_strand="+" ref_description="SGN-E692060 [LH_Ea07L18]">
      <seq>tcttttaatcaatttcccaattcgaagaagataaaaatggctcccttgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtccatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgggattattactactgggattaacccgaaaactgaagcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttccgctggtatggctatcggaatcggtggtgatgctggtgttagagctaatgctcagcatccaaagctttttgttggaatgattctgatccttatttttgctgaagcgacggctctttacggccttattgtcgggatcatcctttcttctcgcgctggtcgatctatagcacagtacagaaatagtatcacctgttccataattgtgaagtatctttgcgctcttcctcgaacaatgaggtagtttggctgttgaattacattttgtttagttttggccttcgcgattatgtatttgattgcttggcaacgactactccctgagaaaagatatcgcacttgtcggatatttgtgaaagaggagtaattgtattgctgtaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36602" stop="34018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36310" g_stop="36196" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="401" r_length="286" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34319" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="738" r_length="337" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E692060" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36310" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAA</genome_strand>
        <mrna_strand>TCTTTTAATCAATTTCCCAATTCGAAGAAGATAAAAATGGCTCCCTTGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCCATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGGGATTATTACTACTGGGATTAACCCGAAAACTGAAGCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCCGCTGGTATGGCTATCGGAATCGGTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCTCAGCATCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCGACGGCTCTTTACGGCCTTATTGTCGGGATCATCCTTTCTTCTCGCGCTGGTCGATCTATAGCACAGTACAGAAATAGTATCACCTGTTCCATAATTGTGAAGTATCTTTGCGCTCTTCCTCGAACAATGAGGTAGTTTGGCTGTTGAATTACATTTTGTTTAGTTTTGGCCTTCGCGATTATGTATTTGATTGCTTGGCAACGACTACTCCCTGAGAAAAGATATCGCACTTGTCGGATATTTGTGAAAGAGGAGTAATTGTATTGCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695900" ref_strand="+" ref_description="SGN-E695900 [LH_Ea07L18](-)">
      <seq>cacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttccgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagcgttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtatcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttgaattacattttgtttagttttggccttcgtgattatgtatttgattgctaggcaaagaagattcccttaataaagatatcaaactttttaaagatttttgaaagacaaataattggattgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36606" stop="34018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36306" g_stop="36196" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="397" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34319" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="733" r_length="336" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E695900" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36306" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAA</genome_strand>
        <mrna_strand>CACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCCGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCGTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTATCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTGAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTAGGCAAAGAAGATTCCCTTAATAAAGATATCAAACTTTTTAAAGATTTTTGAAAGACAAATAATTGGATTGC-GTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696491" ref_strand="+" ref_description="SGN-E696491 [LH_Ea09E09](-)">
      <seq>ctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttccgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagcgttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtatcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttgaattacattttgtttagttttggccttcgtgattatgtatttgattgcttaaaggagaagattcccttaataaagatatcaaacttttttaatagtgtgaaagacaaataattggattgctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36301" stop="34018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36001" g_stop="35821" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34319" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="517" r_length="336" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E696491" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36001" e_stop="35821"/>
          <exon e_start="34655" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAA</genome_strand>
        <mrna_strand>CTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCCGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCGTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTATCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTGAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTAAAGGAGAAGATTCCCTTAATAAAGATATCAAACTTTTTTAATA-GTGTGAAAGACAAATAATTGGATTGCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282239" ref_strand="+" ref_description="SGN-E282239 [cLES-4-C4]">
      <seq>gaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattgaattgctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36240" stop="34018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35940" g_stop="35821" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34319" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="457" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E282239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35940" e_stop="35821"/>
          <exon e_start="34655" e_stop="34319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAA</genome_strand>
        <mrna_strand>GAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720101" ref_strand="+" ref_description="SGN-E720101 [FC09DC09]">
      <seq>aatcggccgaattggattccataaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaataattggattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36638" stop="34023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36346" g_stop="36196" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="438" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34323" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="771" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E720101" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36346" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATC-AATCGATTCCAATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTG</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGATTCCATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGGATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340988" ref_strand="+" ref_description="SGN-E340988 [cTOF-5-J9]">
      <seq>tcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctnntgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataagatatcaaacttttcggatatttttgaaagacaaataattgaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36619" stop="34024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36319" g_stop="36196" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="410" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34324" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="742" r_length="332" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E340988" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36319" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCT-TTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCT</genome_strand>
        <mrna_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTNNTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAAT-AAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711805" ref_strand="+" ref_description="SGN-E711805 [FB03AB07]">
      <seq>ccttagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatcttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggatatttttgaaagacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36620" stop="34034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36321" g_stop="36196" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="412" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34328" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="739" r_length="327" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E711805" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36321" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAAT</genome_strand>
        <mrna_strand>CCTTAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATC-TTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734693" ref_strand="+" ref_description="SGN-E734693 [LB13BD05]">
      <seq>gttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgcttatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcatagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36296" stop="34052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35996" g_stop="35821" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34355" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="475" r_length="301" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="485"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E734693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35996" e_stop="35821"/>
          <exon e_start="34655" e_stop="34355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGG</genome_strand>
        <mrna_strand>GTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCT--TATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCATAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734681" ref_strand="+" ref_description="SGN-E734681 [LB13BC05]">
      <seq>gttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgcttatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgtcacctgttccataattgtgaagtatctttgtgttcttcctcgttcgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36296" stop="34052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35996" g_stop="35821" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34355" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="475" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="485"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E734681" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35996" e_stop="35821"/>
          <exon e_start="34655" e_stop="34355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGG</genome_strand>
        <mrna_strand>GTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCT--TATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGTCACCTGTTCCATAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTCGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396284" ref_strand="+" ref_description="SGN-E396284 [TUS-47-O20]">
      <seq>tcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttggcaaagaagattccctcaataaagatatcaaacttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36614" stop="34056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36314" g_stop="36196" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="405" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34356" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="705" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E396284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36314" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCG</genome_strand>
        <mrna_strand>TCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343561" ref_strand="+" ref_description="SGN-E343561 [cTOF-19-N15]">
      <seq>tcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtatttgattgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36619" stop="34095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36319" g_stop="36196" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="410" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34395" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="671" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E343561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36319" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTG</genome_strand>
        <mrna_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286998" ref_strand="+" ref_description="SGN-E286998 [cLES-6-M24]">
      <seq>cgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttggccttcgtgattatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36613" stop="34104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36313" g_stop="36196" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="404" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34404" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="656" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E286998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36313" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTT</genome_strand>
        <mrna_strand>CGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272143" ref_strand="+" ref_description="SGN-E272143 [cLEN-4-E1]">
      <seq>aacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaattacattttgtttagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36624" stop="34124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36324" g_stop="36196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="415" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34424" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="647" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E272143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36324" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTG</genome_strand>
        <mrna_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391495" ref_strand="+" ref_description="SGN-E391495 [TUS-16-C7]">
      <seq>aaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtgaagtatctttgtgttcttcctcgtttgatgagctagtttggctgttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36625" stop="34143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36196" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="416" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34443" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="629" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E391495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAAT</genome_strand>
        <mrna_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262561" ref_strand="+" ref_description="SGN-E262561 [cLEG-63-G20]">
      <seq>aaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgttccgtaattgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36625" stop="34192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36196" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="416" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34492" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="580" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E262561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGA</genome_strand>
        <mrna_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311131" ref_strand="+" ref_description="SGN-E311131 [cLEZ-16-F19]">
      <seq>ggcacgagtgctcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaagagtgccacctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36620" stop="34204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36319" g_stop="36196" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="135" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="421" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34504" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="573" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E311131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36319" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTT</genome_strand>
        <mrna_strand>TCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305719" ref_strand="+" ref_description="SGN-E305719 [cLEX-14-K13]">
      <seq>taaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctctttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatctagagcagagtagagaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36626" stop="34216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36326" g_stop="36196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="417" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34516" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="557" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E305719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36326" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGA</genome_strand>
        <mrna_strand>TAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262594" ref_strand="+" ref_description="SGN-E262594 [cLEG-63-D21]">
      <seq>aaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctncttacggccttattgtcggtatcatcctttcttctcgcgctggtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36625" stop="34235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36196" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="416" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34535" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="537" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E262594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCT</genome_strand>
        <mrna_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTNCTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726092" ref_strand="+" ref_description="SGN-E726092 [LA10BB10]">
      <seq>cactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctttcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctcttacggccttattgtcggtatcatcctttctctcgcgctggtcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36622" stop="34235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36322" g_stop="36196" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="413" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34540" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="527" r_length="114" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E726092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36322" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTC</genome_strand>
        <mrna_strand>CACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTTTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTC-TTACGGCCTTATTGTCGGTATCATCCTTTC-TCTCGCGCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266344" ref_strand="+" ref_description="SGN-E266344 [cLEI-3-G5]">
      <seq>cgcaaatcacttcaatttcccaattcgaagaagatgaaaatggcttctacgttgagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaaaagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgctatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaaatcgtattatctatgagatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgatggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttcagttggaatgattctgatccttattattgctgaagccttggctctttacggcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36613" stop="34273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36313" g_stop="36196" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="404" r_length="286" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34573" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="487" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E266344" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36313" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTA</genome_strand>
        <mrna_strand>CGCAAATCACTTCAATTTCCCAATTCGAAGAAGATGAAAATGGCTTCTACGTTGAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAAAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGCTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAATCGTATTATCTATGAGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGATGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTCAGTTGGAATGATTCTGATCCTTATTATTGCTGAAGCCTTGGCTCTTTACGGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205020" ref_strand="+" ref_description="SGN-E205020 [cLEC-16-H7]">
      <seq>aacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctgaagccttggctcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36624" stop="34281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36324" g_stop="36196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="415" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34581" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="490" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E205020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36324" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTA</genome_strand>
        <mrna_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256029" ref_strand="+" ref_description="SGN-E256029 [cLEG-35-L23]">
      <seq>taaacactcagatcgcaaatcacttctatttcccaattcgaagaagagaaaaatggcttctacgtttagcggcgatgaaacggcaccaaaaatacactccctaacccccacatgttccttattattattctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtggcgtctatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagtcgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatatggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcaaccaaagctttttgttggaatgattctgatccttatttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36626" stop="34297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36326" g_stop="36196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="0.56"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="417" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34597" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="476" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E256029" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36326" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</genome_strand>
        <mrna_strand>TAAACACTCAGATCGCAAATCACTTCTATTTCCCAATTCGAAGAAGAGAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCAAAAATACACTCCCTAACCCCCACATGTTCCTTATTATTATTCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTGGCGTCTATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTCGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATATGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAACCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261648" ref_strand="+" ref_description="SGN-E261648 [cLEG-61-K11]">
      <seq>acactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcaatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgagaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgactctgatccttatttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36623" stop="34297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36323" g_stop="36196" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="414" r_length="286" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34597" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="473" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E261648" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36323" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</genome_strand>
        <mrna_strand>ACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCAATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAGAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGACTCTGATCCTTATTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258233" ref_strand="+" ref_description="SGN-E258233 [cLEG-49-F10]">
      <seq>cagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36618" stop="34297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36318" g_stop="36196" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="409" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34597" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="468" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E258233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36318" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</genome_strand>
        <mrna_strand>CAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200276" ref_strand="+" ref_description="SGN-E200276 [cLEC-12-D6]">
      <seq>acttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagctttttgttggaatgattctgatccttatttttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36605" stop="34297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36305" g_stop="36196" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="396" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34597" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="455" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E200276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36305" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</genome_strand>
        <mrna_strand>ACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338740" ref_strand="+" ref_description="SGN-E338740 [cTOE-21-C20]">
      <seq>caaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctatttgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcagccaaagcttttttgttggaatgattctgatccttatttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36611" stop="34298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36311" g_stop="36196" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="402" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34598" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="461" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E338740" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36311" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGC-TTTTTGTTGGAATGATTCTGATCCTTATTTTTGCT</genome_strand>
        <mrna_strand>CAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAGCCAAAGCTTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272137" ref_strand="+" ref_description="SGN-E272137 [cLEN-4-C1]">
      <seq>aacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaatagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagctgttatggctggagttttgggtatttatgggttaattattgctgtgattattagtactgggattaacccgaaaactaagtcgtattatctattcgatggatatgctcacctctcatctggtcttgcttgtggacttgctggtctttctgctggtatggctatcggaatcgttggtgatgctggtgttagagctaatgcacagcaaccaaagctttttgttggaatgattctgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36624" stop="34307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36324" g_stop="36196" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35821" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="415" r_length="286" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34607" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="464" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E272137" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36324" e_stop="36196"/>
          <exon e_start="36106" e_stop="35821"/>
          <exon e_start="34655" e_stop="34607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAGGTATTTTATTATTTTTGCTAATTTTCTGTATTGTGTTTAATCATTGTGCTATTGCAGAAATGACATAGAGATTCATAAAGATATAATATTTTGATATTGCATTCTGGTTAATTATATGCTGGTATTGGGATAGATGTGAAGAGCATGTGGGTTTGGATCTTTAATCAGTTATGGCAGATTTTTTGTTACCTTTTGGCATTTCTATGTATGATCTGTCTGAATTTACTTACTAGCCAAGCTTCTATTGGTTGTCCTTTATTTAAAAGATCACTCTTTTATTGGTTGTCCTTTATTAAAAGATCACTCTTTTATTGGTGTCCTTCATTAAAAAAGATCACCCTTTTTTAGGATTTTCATGATTTGTCTGAAATGAGTAATGGTGAATTGTGTATTTGGTGGAGAGATATTAGGCTACCAAATATTTGAGTTGTTTCTTTTTCCTTTAAACTTGAGTTCATTGCAACTTGATCTTTACTTGCATGTGGTTGACTGTGATAAAAATAATAGATGGCCTTTAGTGAATAAATAGATCCTGGATTCTGTTTAAGGACTATAAATTGTTCTTCATGACTGATTGGTGTAGATAGGGGAAGGTGCAAAAGAGGGGGAAGGGGGGACTGGAGAGTGGTGATTATAACGTTCGGATTATCAATTCTGCATGGTGGGGTTGGACTGAACTTTGGGATACAGCAATTCTGCATGTTGGGGTTTGAACGGGAAATTAGAGATTAAATTCACCTTCAAGGATTCTTTTTCCTTTGTTAGTCTCAAGAGAACTTCCAGGGCAGCTTTGGTGTAACACATGATGTATGTGTTAGGCGCATGACATGGGTTCAAATCCTGCCACTAGATTTATATTTAAGTGGAGAGGGTTATAGATGTAGGTCCTTTATCCATCAAGTTTAAAATCGTATGCTTTAGCTATTAGACTTTTACACCTTGGTGGCTTAACTGAGTATATATACAGTTGCAGTCTTATGTTGTAGGCTTTGTTGGTTAACTAATGTAGGGGTTGATAGTCACAACTTCTGTTTTCGTATATAGCATTCGACATTCATATAGTTCTGCTAACTTCATTTATCCTTTACTCAGAAGGAGGTTTCCTCACTTGAGATGAGAGGACATACCAATTAATGCTGCATTTCTTTGTTTCTGTTGTTTCCAGAGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTT</genome_strand>
        <mrna_strand>AACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAATAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGCTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTCGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAATGCACAGCAACCAAAGCTTTTTGTTGGAATGATTCTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398057" ref_strand="-" ref_description="SGN-E398057 [TUS-38-I6](-)">
      <seq>actagttcatcaatcaatcgattccaataaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaagagtggggtaggagtagcgtcgatgggtgtaatgaggccggaattggtaatgaagtcaattgttccagttgttatggctggagttttgggtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36652" stop="35682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36354" g_stop="36196" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="35982" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="283" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E398057" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398057" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36354" e_stop="36196"/>
          <exon e_start="36106" e_stop="35982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATCAATCAATCAATCGATTCCAATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTAT</genome_strand>
        <mrna_strand>ACTAGTTC-ATCAATCAATCGATTCCAATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201582" ref_strand="+" ref_description="SGN-E201582 [cLEC-11-G21]">
      <seq>aaacactcagatcgcaaatcacttcaatttcccaattcgaagaagataaaaatggcttctacgtttagcggcgatgaaacggcaccgttttttggcttcctcggcgctgcagctgccttagtcttctcctgtatgggtgcagcttatggtacagcgaaaagtggggtacgagtagcgtccatgggtgtaatgaggccggaattggtaatgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="36625" stop="35722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36325" g_stop="36196" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36106" g_stop="36022" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="215" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E201582" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36325" e_stop="36196"/>
          <exon e_start="36106" e_stop="36022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCTGTAATTCTTTTTCCATTAGATCTAAGCTATGAGTTTTTCAATTTTATGTATTTTGAATCCAAATCTAATATTTTTTTTTGTGAATTTAGGTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTC</genome_strand>
        <mrna_strand>AAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT.........................................................................................GTATGGGTGCAGCTTATGGTACAGCGAAAAGTGGGGTACGAGTAGCGTCCATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244960" ref_strand="+" ref_description="SGN-E244960 [cLEF-2-K14]">
      <seq>tatagcggagagctgagagactacttggcagcaggaggagagccttctctttggatgacttgctaattccagtccttacaggttgtgatttcactcggccttcctatttacttttgagggcctgcttttattttggtcttaccaattaaaaattgtggtcatttttcctcctattgtctcaccctctgtttctcttaagatttcaatgagatgggtctatccatcaagctagtagtataccctcggtttgaggttggtgaaatttgatggtatacagttctgcagaaacatataacttctcatattgaacatcttggaatgagtaccggtaccggcagtatgtgtactactggcagtagataaagatgaaaatatcagctatgttgttcagtgcagaatgatgttgaattggggaagaagttcttgattggattgctaacgtccaatcaaaatctctcgttttcctcatgttcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="38870" stop="37794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38570" g_stop="38094" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E244960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38570" e_stop="38094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCGGAGAGCTGAGAGACTACTTGGCAGCAGGAGGAGAGCCTTCTCTTTGGATGACTTGCTAATTCCAGTCCTTACAGGTTGTGATTTCACTCGGCCTTCCTATTTACTTTTGAGGGCCTGCTTTTATTTTGGTCTTACCAATTAAAAATTGTGGTCATTTTTCCTCCTATTGTCTCACCCTCTGTTTCTCTTAAGATTTCAATGAGATGGGTCTATCCATCAGGCTAGTAGTATACCCTCGGTTTGAGGTTGGTGAAATTTGATGGTATACAGTTCTGCAGAAACATATAACTTCTCATATTGAACATCTTGGAATGAGTACCGGTACCGGCAGTATGTGTACTACTGGCAGTAGATAAAGATGAAAATATCAGCTATGTTGTTCAGTGCAGAATGATGTTGAATTGGGGAAGAAGTTCTTGATTGGATTGCTAACGTCCAATCAAAATCTCTCGTTTTCCTCATGTTCAATG</genome_strand>
        <mrna_strand>TATAGCGGAGAGCTGAGAGACTACTTGGCAGCAGGAGGAGAGCCTTCTCTTTGGATGACTTGCTAATTCCAGTCCTTACAGGTTGTGATTTCACTCGGCCTTCCTATTTACTTTTGAGGGCCTGCTTTTATTTTGGTCTTACCAATTAAAAATTGTGGTCATTTTTCCTCCTATTGTCTCACCCTCTGTTTCTCTTAAGATTTCAATGAGATGGGTCTATCCATCAAGCTAGTAGTATACCCTCGGTTTGAGGTTGGTGAAATTTGATGGTATACAGTTCTGCAGAAACATATAACTTCTCATATTGAACATCTTGGAATGAGTACCGGTACCGGCAGTATGTGTACTACTGGCAGTAGATAAAGATGAAAATATCAGCTATGTTGTTCAGTGCAGAATGATGTTGAATTGGGGAAGAAGTTCTTGATTGGATTGCTAACGTCCAATCAAAATCTCTCGTTTTCCTCATGTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357886" ref_strand="+" ref_description="SGN-E357886 [cTOS-24-H7]">
      <seq>aaaggatgagcagtcactcttattgatgctttacggcagggtgattagtctcatcaactttttcacgagtgggtgcaacaatcatggacgagtgaggaatgcaggcttcattgaacaattatccttgccaagctagttatcgtcttcagagactcttttgttgaatgtatcatggactgtttattgtaagagactgattaattgtcctgcaaatttgagacttttgacatttctgttgcggtgtctgcaagaaacaatctcaaggtgataaagtcggtgaaaacatgtctgtcatgtgaatgttatactactactactcctgctgactgacgtgaattccttaagagatagcaagattaggtttagaattggtagtcagatttgaagttgtattatatagaagaaaagtagccctttgtttctttcagttcagggttcccctttgatgaacaatcacttctgacttttctttagttttggtatgtgtacagctcaggattgttatcattggaacaaatatacagaacattttgagggcgtcatatgcttccttcattttgaaatattgatttctcagaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="39923" stop="38740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39623" g_stop="39042" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E357886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39623" e_stop="39042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCTGTCATGTGAATGTTATACTACTACTACTCCTGCTGACTGACGTGAATTCCTTAAGAGATAGCAAGATTAGGTTTAGAATTGGTAGTCAGATTTGAAGTTGTATTATATAGAAGAAAAGTAGCCCTTTGTTTCTTTCAGTTCAGGGTTCCCCTTTGATGAACAATCACTTCTGACTTTTCTTTAGTTTTGGTATGTGTACAGCTCAGGATTGTTATCATTGGAACAAATATACAGAACATTTTGAGGGCGTCATATGCTTCCTTCATTTTGAAATATTGATTTCTCAGAATAA</genome_strand>
        <mrna_strand>AAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCTGTCATGTGAATGTTATACTACTACTACTCCTGCTGACTGACGTGAATTCCTTAAGAGATAGCAAGATTAGGTTTAGAATTGGTAGTCAGATTTGAAGTTGTATTATATAGAAGAAAAGTAGCCCTTTGTTTCTTTCAGTTCAGGGTTCCCCTTTGATGAACAATCACTTCTGACTTTTCTTTAGTTTTGGTATGTGTACAGCTCAGGATTGTTATCATTGGAACAAATATACAGAACATTTTGAGGGCGTCATATGCTTCCTTCATTTTGAAATATTGATTTCTCAGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700494" ref_strand="+" ref_description="SGN-E700494 [FA13BB08]">
      <seq>ggcaatgtcaagcagctgctgctaattcagatttctatgatccagtgatgcatgtcactgatgaagaggattcaaacgtgagttccaaaatggatatgagaaagcatgatgtgttagtgtgtgaaagctctgcctcacaaattactgtaaataaagaggcattagataatcaaccgagaggagcaaaaagaattaagcaggctgttgtagattatgttgcgtctttgctgatgcctctttataaagcaaggaaactcgacagggatgggtataaatccataatgaaaaaaactgctacaaaggtaatggaacatgccacagatgctaaaaaggccatgcatgtgtacgagtttcttgatttcaaacgtaaaaacaagattagagatttcgtggacaagttggttgaaaggcatattcagatgaatccgggtgcaaaatcataatggacaaaggatgagcagtcactcttattgatgctttaccgcagggtgattagtctcatcaactttttcacgagtgggtgcaacaatcatggacgagtgaggaatgcaggcttcattgaacaattatccttgccaagctagttatcgtcttcagagactcttttgttgaatgtatcatggactgtttattgtaagagactgattaattgtcctgcaaatttgagacttttgacatttctgttgcggtgtctgcaagaaacaatctcaaggtgataaagtcggtgaaaacatgtctgtcatgtgaatgttatactactactactcctgctgactgacgtgaattccttaagagatagcaagattaggtttagaattggtagtcagatttgaagttgtattatatagaagaaaagtagccctttgttttcttcagttcagggttcccctttgatgaacaatcacttctgacttttctttagttttggtatgggtacagctcaggattgttatcattggaaacaatatatagaacattttgaaggcgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="41900" stop="38780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41600" g_stop="41299" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41298" i_stop="41174" i_length="125">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41173" g_stop="41099" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="377" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41098" i_stop="39695" i_length="1404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39694" g_stop="39083" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="989" r_length="612" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="990" polyA_stop="1001"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E700494" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>989</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41600" e_stop="41299"/>
          <exon e_start="41173" e_stop="41099"/>
          <exon e_start="39694" e_stop="39083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATGTCAAGCAGCTGCTGCTAATTCAGATTTCTATGATCCAGTGATGCATGTCACTGATGAAGAGGATTCAAACGTGAGTTCCAAAATGGATATGAGAAAGCATGATGTGTTAGTGTGTGAAAGCTCTGCCTCACAAATTACTGTAAATAAAGAGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAGGTCTGCTTTTGTCCTGACTCACCCTAACTTCTCGTAGCCTGTTCGATTCTTTATTCTTTGTTTCCATAATTGAGGTTCTTTAATCCTTTATATCTATAATTAACTGATCCTGTTCCCAACTCCAGGTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAGGTACAAACTACTCTCAGTTGATGTCACCTTTTTGCATTGTTGAATAGTTTCTAACTGCTTATTGTTGCTCTACTCTTAAAGTTTCTTTAAACTAGAAATTTGATCTGCAATATATAAGCATTTCAAAAGGACACAAAGCTAATAAAGTTGTGAGTTACATTAAATGCAAATAAGCACAAGCCTATGGAAGACTGACCCTACTCTTAGTGTATAAAATTCTACTATTGCATAATTTAGTCTGGCCAAAGACCTTTCACGTCAGTTCCTTTAAATTCATATGGCAGTTCACCAAATGCCAAGTGTTAAAAAGAGTGTGGAAGACCTGCCCCTTTTTTGCTTTCTCAGAGAAGGGCCTCTCTTTTGTGGATAGAGAAGGTTTAGAGGTTAAACTATTGATTGGATCTTTAGGTGTGAATTGTGATTTATCCTAGGTATTATGGGATCCTGTATACAGAAGAGCCACTCTTGGCCTAGTTGTTGGAAATTTGGCAAACATTCATTTGTGTATCTTAAAACTTGGAAAAGGAAAAAAAGTCTGCTTTTTCTCATGCAAATGACTCGTATTTTCTTACTTGCATTAGGTATGATGTTTACCTGGTTTAGTCCATAGGGATGTGTATGAGATATAGAGAACCAATCAATTGAGTGAGATTGAGGCATAATTGATTGGTTGAATGTGAGATTGTTGAACAAACTTTCCCACCATTCACTGTTATCAGATAAAGTGCCTTTACATATATCTTGTAGCTGAAAGTGGAAATTTTGTTTTGGGGGTAAGTTAGGCAGTGATTTAGACTTGGGACTTCCATGTTGGAGGTCTCAAAGTTCGAAATCCCTTGCCAGCGAAAGCAAGGGATTTGCCTTCTGGATCGCGCTCGTCGCACCAAGCTTGGTTAGTGCGGGTTACCGCTTCGGTGTGGTTTGCATAGGAATGGGGGCTTTACCCTGCGCTCACCCAAAGGGGTAGCGGCTATGGATTTTCCTTCATAAAAAAAAGAGAATGGAAAGGACCTCAATTATATACAGAAAATAAGAAGAAGAAAGAAAAGAGAAAAGGGATTGGGCAAGTGGAGGAGATAGTGAAAGGGAACTGTTTTCTCTTGTTTGGTTTGAGAGTAAGGGGAGGGGAAAAGCCTATTTATTCAAATTCTAGACTGGACAGGACAGCCTGTAAGAAGCTATGCTGATTTATATCGTCCTCCATACAGACTTTTGGATAGGTTGGATTATTATGATAAAAATAAAATAAGCCTAAAAAATAAAAATTATGTGGATCTATTTGGAGATATACTCCAACTAAAAACACTTGTATTTTTTTTTATAGCATTCACTCAATATGCTTGGTATTTATTTTCATTTTCATTGCATTTCTGCCTTTGATTTTTTGTATTGGTAAATCTGCAGATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCTGTCATGTGAATGTTATACTACTACTACTCCTGCTGACTGACGTGAATTCCTTAAGAGATAGCAAGATTAGGTTTAGAATTGGTAGTCAGATTTGAAGTTGTATTATATAGAAGAAAAGTAGCCCTTTGTTTCTTTCAGTTCAGGGTTCCCCTTTGATGAACAATCACTTCTGACTTTTCTTTAGTTTTGGTATGTGTACAGCTCAGGATTGTTATCATTGGAACAAATATACAGAACATTTTGAGGGCGTC</genome_strand>
        <mrna_strand>GGCAATGTCAAGCAGCTGCTGCTAATTCAGATTTCTATGATCCAGTGATGCATGTCACTGATGAAGAGGATTCAAACGTGAGTTCCAAAATGGATATGAGAAAGCATGATGTGTTAGTGTGTGAAAGCTCTGCCTCACAAATTACTGTAAATAAAGAGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAAAAAACTGCTACAAAG.............................................................................................................................GTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACCGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCTGTCATGTGAATGTTATACTACTACTACTCCTGCTGACTGACGTGAATTCCTTAAGAGATAGCAAGATTAGGTTTAGAATTGGTAGTCAGATTTGAAGTTGTATTATATAGAAGAAAAGTAGCCCTTTGTTTTCTTCAGTTCAGGGTTCCCCTTTGATGAACAATCACTTCTGACTTTTCTTTAGTTTTGGTATGGGTACAGCTCAGGATTGTTATCATTGGAAACAATATATAGAACATTTTGAAGGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368757" ref_strand="+" ref_description="SGN-E368757 [TUS-22-N12]">
      <seq>ctgcctcacaaattactgtaaataaagaggcattagataatcaaccgagaggagcaaaaagaattaagcaggctgttgtagattatgttgcgtctttgctgatgcctctttataaagcaaggaaactcgacagggatgggtataaatccataatgaagaaaactgctacaaaggtaatggaacatgccacagatgctaaaaaggccatgcatgtgtacgagtttcttgatttcaaacgtaaaaacaagattagagatttcgtggacaagttggttgaaaggcatattcagatgaatccgggtgcaaaatcataatggacaaaggatgagcagtcactcttattgatgctttacggcagggtgattagtctcatcaactttttcacgagtgggtgcaacaatcatggacgagtgaggaatgcaggcttcattgaacaattatccttgccaagctagttatcgtcttcagagactcttttgttgaatgtatcatggactgtttattgtaagagactgattaattgtcctgcaaatttgagacttttgacatttctgttgcggtgtctgcaagaaacaatctcaaggtgataaagtcggtgaaaacatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="41771" stop="39034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41471" g_stop="41299" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41298" i_stop="41174" i_length="125">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41173" g_stop="41099" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="248" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41098" i_stop="39695" i_length="1404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39694" g_stop="39334" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="609" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E368757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41471" e_stop="41299"/>
          <exon e_start="41173" e_stop="41099"/>
          <exon e_start="39694" e_stop="39334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTCACAAATTACTGTAAATAAAGAGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAGGTCTGCTTTTGTCCTGACTCACCCTAACTTCTCGTAGCCTGTTCGATTCTTTATTCTTTGTTTCCATAATTGAGGTTCTTTAATCCTTTATATCTATAATTAACTGATCCTGTTCCCAACTCCAGGTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAGGTACAAACTACTCTCAGTTGATGTCACCTTTTTGCATTGTTGAATAGTTTCTAACTGCTTATTGTTGCTCTACTCTTAAAGTTTCTTTAAACTAGAAATTTGATCTGCAATATATAAGCATTTCAAAAGGACACAAAGCTAATAAAGTTGTGAGTTACATTAAATGCAAATAAGCACAAGCCTATGGAAGACTGACCCTACTCTTAGTGTATAAAATTCTACTATTGCATAATTTAGTCTGGCCAAAGACCTTTCACGTCAGTTCCTTTAAATTCATATGGCAGTTCACCAAATGCCAAGTGTTAAAAAGAGTGTGGAAGACCTGCCCCTTTTTTGCTTTCTCAGAGAAGGGCCTCTCTTTTGTGGATAGAGAAGGTTTAGAGGTTAAACTATTGATTGGATCTTTAGGTGTGAATTGTGATTTATCCTAGGTATTATGGGATCCTGTATACAGAAGAGCCACTCTTGGCCTAGTTGTTGGAAATTTGGCAAACATTCATTTGTGTATCTTAAAACTTGGAAAAGGAAAAAAAGTCTGCTTTTTCTCATGCAAATGACTCGTATTTTCTTACTTGCATTAGGTATGATGTTTACCTGGTTTAGTCCATAGGGATGTGTATGAGATATAGAGAACCAATCAATTGAGTGAGATTGAGGCATAATTGATTGGTTGAATGTGAGATTGTTGAACAAACTTTCCCACCATTCACTGTTATCAGATAAAGTGCCTTTACATATATCTTGTAGCTGAAAGTGGAAATTTTGTTTTGGGGGTAAGTTAGGCAGTGATTTAGACTTGGGACTTCCATGTTGGAGGTCTCAAAGTTCGAAATCCCTTGCCAGCGAAAGCAAGGGATTTGCCTTCTGGATCGCGCTCGTCGCACCAAGCTTGGTTAGTGCGGGTTACCGCTTCGGTGTGGTTTGCATAGGAATGGGGGCTTTACCCTGCGCTCACCCAAAGGGGTAGCGGCTATGGATTTTCCTTCATAAAAAAAAGAGAATGGAAAGGACCTCAATTATATACAGAAAATAAGAAGAAGAAAGAAAAGAGAAAAGGGATTGGGCAAGTGGAGGAGATAGTGAAAGGGAACTGTTTTCTCTTGTTTGGTTTGAGAGTAAGGGGAGGGGAAAAGCCTATTTATTCAAATTCTAGACTGGACAGGACAGCCTGTAAGAAGCTATGCTGATTTATATCGTCCTCCATACAGACTTTTGGATAGGTTGGATTATTATGATAAAAATAAAATAAGCCTAAAAAATAAAAATTATGTGGATCTATTTGGAGATATACTCCAACTAAAAACACTTGTATTTTTTTTTATAGCATTCACTCAATATGCTTGGTATTTATTTTCATTTTCATTGCATTTCTGCCTTTGATTTTTTGTATTGGTAAATCTGCAGATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCT</genome_strand>
        <mrna_strand>CTGCCTCACAAATTACTGTAAATAAAGAGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAG.............................................................................................................................GTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733938" ref_strand="+" ref_description="SGN-E733938 [LB11BD08]">
      <seq>tctttataaagcaaggaaactcgacagggatgggtataaatccataatgaagaaaactgctacaaaggtaatggaacatgccacagatgctaaaaaggccatgcatgtgtacgagtttcttgatttcaaacgtaaaaacaagattagagatttcgtggacaagttggttgaaaggcatattcagatgaatccgggtgcaaaatcataatggacaaaggatgagcagtcactcttattgatgctttaccgcanggtgattagtctcatcaactttttcacgagtgggtgcaacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="41665" stop="39240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41365" g_stop="41299" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41298" i_stop="41174" i_length="125">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41173" g_stop="41099" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="142" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41098" i_stop="39695" i_length="1404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39694" g_stop="39540" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="297" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E733938" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41365" e_stop="41299"/>
          <exon e_start="41173" e_stop="41099"/>
          <exon e_start="39694" e_stop="39540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAGGTCTGCTTTTGTCCTGACTCACCCTAACTTCTCGTAGCCTGTTCGATTCTTTATTCTTTGTTTCCATAATTGAGGTTCTTTAATCCTTTATATCTATAATTAACTGATCCTGTTCCCAACTCCAGGTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAGGTACAAACTACTCTCAGTTGATGTCACCTTTTTGCATTGTTGAATAGTTTCTAACTGCTTATTGTTGCTCTACTCTTAAAGTTTCTTTAAACTAGAAATTTGATCTGCAATATATAAGCATTTCAAAAGGACACAAAGCTAATAAAGTTGTGAGTTACATTAAATGCAAATAAGCACAAGCCTATGGAAGACTGACCCTACTCTTAGTGTATAAAATTCTACTATTGCATAATTTAGTCTGGCCAAAGACCTTTCACGTCAGTTCCTTTAAATTCATATGGCAGTTCACCAAATGCCAAGTGTTAAAAAGAGTGTGGAAGACCTGCCCCTTTTTTGCTTTCTCAGAGAAGGGCCTCTCTTTTGTGGATAGAGAAGGTTTAGAGGTTAAACTATTGATTGGATCTTTAGGTGTGAATTGTGATTTATCCTAGGTATTATGGGATCCTGTATACAGAAGAGCCACTCTTGGCCTAGTTGTTGGAAATTTGGCAAACATTCATTTGTGTATCTTAAAACTTGGAAAAGGAAAAAAAGTCTGCTTTTTCTCATGCAAATGACTCGTATTTTCTTACTTGCATTAGGTATGATGTTTACCTGGTTTAGTCCATAGGGATGTGTATGAGATATAGAGAACCAATCAATTGAGTGAGATTGAGGCATAATTGATTGGTTGAATGTGAGATTGTTGAACAAACTTTCCCACCATTCACTGTTATCAGATAAAGTGCCTTTACATATATCTTGTAGCTGAAAGTGGAAATTTTGTTTTGGGGGTAAGTTAGGCAGTGATTTAGACTTGGGACTTCCATGTTGGAGGTCTCAAAGTTCGAAATCCCTTGCCAGCGAAAGCAAGGGATTTGCCTTCTGGATCGCGCTCGTCGCACCAAGCTTGGTTAGTGCGGGTTACCGCTTCGGTGTGGTTTGCATAGGAATGGGGGCTTTACCCTGCGCTCACCCAAAGGGGTAGCGGCTATGGATTTTCCTTCATAAAAAAAAGAGAATGGAAAGGACCTCAATTATATACAGAAAATAAGAAGAAGAAAGAAAAGAGAAAAGGGATTGGGCAAGTGGAGGAGATAGTGAAAGGGAACTGTTTTCTCTTGTTTGGTTTGAGAGTAAGGGGAGGGGAAAAGCCTATTTATTCAAATTCTAGACTGGACAGGACAGCCTGTAAGAAGCTATGCTGATTTATATCGTCCTCCATACAGACTTTTGGATAGGTTGGATTATTATGATAAAAATAAAATAAGCCTAAAAAATAAAAATTATGTGGATCTATTTGGAGATATACTCCAACTAAAAACACTTGTATTTTTTTTTATAGCATTCACTCAATATGCTTGGTATTTATTTTCATTTTCATTGCATTTCTGCCTTTGATTTTTTGTATTGGTAAATCTGCAGATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCA</genome_strand>
        <mrna_strand>TCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAG.............................................................................................................................GTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACCGCANGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240805" ref_strand="+" ref_description="SGN-E240805 [cLED-24-F1]">
      <seq>aggcattagataatcaaccgagaggagcaaaaagaattaagcaggctgtcgtagattatgttgcgtctttgctgatgcctctttataaagcaaggaaactcgacagggatgggtataaatccataatgaagaaaactgctacaaaggtaatggaacatgccacagatgctaaaaaggccatgcatgtgtacgagtttcttgatttcaaacgtaaaaacaggattagagatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="41744" stop="40788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41444" g_stop="41299" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41298" i_stop="41174" i_length="125">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41173" g_stop="41099" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="221" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E240805" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41444" e_stop="41299"/>
          <exon e_start="41173" e_stop="41099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAGGTCTGCTTTTGTCCTGACTCACCCTAACTTCTCGTAGCCTGTTCGATTCTTTATTCTTTGTTTCCATAATTGAGGTTCTTTAATCCTTTATATCTATAATTAACTGATCCTGTTCCCAACTCCAGGTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAG</genome_strand>
        <mrna_strand>AGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTCGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAG.............................................................................................................................GTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337878" ref_strand="+" ref_description="SGN-E337878 [cTOE-14-G8]">
      <seq>atcacttagctgttagtgtcaacaacaagaagctgaatgtcaggccagccacgataggagctattccagttgttgaaccgtcaacctctcaagcttcagtaggaaggcaaaatgataccagtgaggaaacacaaaattttcccatgtctgaggaagagaaggctgcgtttgctgctgcagaagctgctcgccttgctgctctagcagctgctgaggcctatgcttcatctggtgccaagtgtaacatgccactgcagcttcctaagataccctcatttcacaaatttgctcgacgggaacaatatgcaaatatggatgagtctgacatcagaaagaattggcctggcggtgtggtaggaaggcaagattgtttatccgaaattgattctcgcaattgccgggtgagggattggtctgttgatttttctgctgctggtgtgaaccttgacagttcaaaaatgtctgttgataatcgctcacagcgtagcctctcaaatgacaatgcaagtcagcttaactataaggagcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="43017" stop="41398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42717" g_stop="42503" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42502" i_stop="42016" i_length="487">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42015" g_stop="41698" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="533" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E337878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42717" e_stop="42503"/>
          <exon e_start="42015" e_stop="41698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTAGCTGTTAGTGTCAACAACAAGAAGCTGAATGTCAGGCCAGCCACGATAGGAGCTATTCCAGTTGTTGAACCGTCAACCTCTCAAGCTTCAGTAGGAAGGCAAAATGATACCAGTGAGGAAACACAAAATTTTCCCATGTCTGAGGAAGAGAAGGCTGCGTTTGCTGCTGCAGAAGCTGCTCGCCTTGCTGCTCTAGCAGCTGCTGAGGTTAGTGTCTTATAATGTATTGTATCCTAGATTTATTAACTGTGGTGACTCCTTTGTTCAATATGGGGATGTGCTACATTTTTACTGTTTTTTTGGTTATTCCTCGAGTATGCAAGTTATTGAAAAAAGGGGAAACACACAAGCTAGATTCCCTGTTATGTTGCTTTAGAAAGAAAAAAAAGACAGATAAAAACATTTATAATATGGTGCAGCCCAAAAGCAACATAATGGTGTATCATCCCAAGATTTATTAGTCGTGTTGATTCATTTGTTCAATATGAGAAGGGAATATGCTATATTTTTTTTATTATTATTCCTCGAGTATATAAGTTATAAAAAAGGGGAAAAACGCAAAGTTGGATTCTGTATTACTTTGCTTTTGGGCTTCTCTATATTGCAAATGTTTTTGTCTGTCTTATGTTCTTTTTTGTCAAATAAATCTTGCTTTTCTCTTAAGCAACTGTACAATGATTACCCTTCATTGCAGGCCTATGCTTCATCTGGTGCCAAGTGTAACATGCCACTGCAGCTTCCTAAGATACCCTCATTTCACAAATTTGCTCGACGGGAACAATATGCAAATATGGATGAGTCTGACATCAGAAAGAATTGGCCTGGCGGTGTGGTAGGAAGGCAAGATTGTTTATCCGAAATTGATTCTCGCAATTGCCGGGTGAGGGATTGGTCTGTTGATTTTTCTGCTGCTGGTGTGAACCTTGACAGTTCAAAAATGTCTGTTGATAATCGCTCACAGCGTAGCCTCTCAAATGACAATGCAAGTCAGCTTAACTATAAGGAGCACTCT</genome_strand>
        <mrna_strand>ATCACTTAGCTGTTAGTGTCAACAACAAGAAGCTGAATGTCAGGCCAGCCACGATAGGAGCTATTCCAGTTGTTGAACCGTCAACCTCTCAAGCTTCAGTAGGAAGGCAAAATGATACCAGTGAGGAAACACAAAATTTTCCCATGTCTGAGGAAGAGAAGGCTGCGTTTGCTGCTGCAGAAGCTGCTCGCCTTGCTGCTCTAGCAGCTGCTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTATGCTTCATCTGGTGCCAAGTGTAACATGCCACTGCAGCTTCCTAAGATACCCTCATTTCACAAATTTGCTCGACGGGAACAATATGCAAATATGGATGAGTCTGACATCAGAAAGAATTGGCCTGGCGGTGTGGTAGGAAGGCAAGATTGTTTATCCGAAATTGATTCTCGCAATTGCCGGGTGAGGGATTGGTCTGTTGATTTTTCTGCTGCTGGTGTGAACCTTGACAGTTCAAAAATGTCTGTTGATAATCGCTCACAGCGTAGCCTCTCAAATGACAATGCAAGTCAGCTTAACTATAAGGAGCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708434" ref_strand="+" ref_description="SGN-E708434 [FA35DA07]">
      <seq>ccttttagaggggtgaagatcgtgacccgggagaatttgctcccggacatgttctgtaaggccaatacaacagcaggaagattgcatctcgcaaaagaattgttgaaacttccggtagaagttttgagatcttttgctggaactaaagaagggcttagcacacttaatttgtggatgctggactccatgggaaaggatgggacccaactcttgcgccattgtgttcgtctactagtacttgtttcaactgatttgcttgcagtccgactgtcaggtattgggaaaacggttaaagaaaaagtctgtgtgcatactagccgtgacatacgtgctgtagcaagtcagcttgtcaatgtatggatagaactttttcgaaaggagaaggctgctaatggtggtctgaaattactaagacaatccactgccactgatacttcgaagagcaaacacattgcagcacctggcaaacctcctattcgcagtcatccttcagcagtagacagtaaacggagttctaaagtttcttcatcggcaggaaatcacttagctgttagtgttaacaacaagaagctgaatgtcaggccagccacgttaggagctattccagttgttgaaccgtcaacctctcaagcttcagtaggaaggcaaaatgataccagtgaggaaacacaaaattttcccatgtctgatgaagagaaggctggcgttgctgctgcaaaaactgctccccttgctgctctagcagctgcctgaagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="44023" stop="42202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43725" g_stop="43546" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43545" i_stop="43461" i_length="85">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43460" g_stop="43367" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="274" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43366" i_stop="42982" i_length="385">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42981" g_stop="42509" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="747" r_length="473" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E708434" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43725" e_stop="43546"/>
          <exon e_start="43460" e_stop="43367"/>
          <exon e_start="42981" e_stop="42509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGGATGGGGTGAAGATCGTGACCCGGGAGAATTTGCTAAGGGACATGTTCTGTAAGGCCAATACAACAGCAGGAAGATTGCATCTCGCAAAAGAATTGTTGAAACTTCCGGTAGAAGTTTTGAGATCTTTTGCTGGAACTAAAGAAGGGCTTAGCACACTTAATTTGTGGATGCTGGTATTAATCGTCACATATTTTAGTTTCATGCCATATCTGTTGAACACAAATTGCTTGTTGTCTGACTAATGTTTGTTGGTCACAGGACTCCATGGGAAAGGATGGGACCCAACTCTTGCGCCATTGTGTTCGTTTACTAGTACTTGTTTCAACTGATTTGCTTGCAGTCCGGCTGTCAGGTACATTCCCCTTTGAGTAAAGGAACTAACCCCCACCCCCTTCTGCTCTCCTTTGTTTTTTCTATTGTGAACCTTCTTTTGAGATTTCTTTTTGGGGGTGGGTCGAAGAGGCAGTCCTGCCATTCTGGAACTGTTCACCTTTATTCCGATATTGTTTGCTATAAGCTGATTTGTACCTTCAAATTATTTATGTGCACAACCCCATCGGGGCTATCAATATTCTCTGTTAATGTTTCATATTTTTCAGCTTGTATGCTATAAACTCAAAATATTTGCTTTCTATATCCATTAATGGCTAATGATCCTTATAATTGTCATATCATTAGCGTATTGCTTTGTCCTTGCATTGATTTAACTGATTCTATTCCTGTCATATTTTATCCAGGTATTGGGAAAACGGTTAAAGAAAAAGTCTGTGTGCATACTAGCCGTGACATACGTGCTGTAGCAAGTCAGCTTGTCAATGTATGGATAGAACTTTTTCGAAAGGAGAAGGCTGCTAATGGTGGTCTGAAATTACTAAGACAATCCACTGCCACTGATACTTCGAAGAGCAAACACATTGCAGCACCTGGCAAACCTCCTATCCGCAGTCATCCTTCAGCAGTAGACAGTAAACGGAGTTCTAAAGTTTCTTCATCGGCTGGAAATCACTTAGCTGTTAGTGTCAACAACAAGAAGCTGAATGTCAGGCCAGCCACGATAGGAGCTATTCCAGTTGTTGAACCGTCAACCTCTCAAGCTTCAGTAGGAAGGCAAAATGATACCAGTGAGGAAACACAAAATTTTCCCATGTCTGAGGAAGAGAAGGCTGCGTTTGCTGCTGCAGAAGCTGCTCGCCTTGCTGCTCTAGCAGCT</genome_strand>
        <mrna_strand>CCTTTTAGAGGGGTGAAGATCGTGACCCGGGAGAATTTGCTCCCGGACATGTTCTGTAAGGCCAATACAACAGCAGGAAGATTGCATCTCGCAAAAGAATTGTTGAAACTTCCGGTAGAAGTTTTGAGATCTTTTGCTGGAACTAAAGAAGGGCTTAGCACACTTAATTTGTGGATGCTG.....................................................................................GACTCCATGGGAAAGGATGGGACCCAACTCTTGCGCCATTGTGTTCGTCTACTAGTACTTGTTTCAACTGATTTGCTTGCAGTCCGACTGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGGAAAACGGTTAAAGAAAAAGTCTGTGTGCATACTAGCCGTGACATACGTGCTGTAGCAAGTCAGCTTGTCAATGTATGGATAGAACTTTTTCGAAAGGAGAAGGCTGCTAATGGTGGTCTGAAATTACTAAGACAATCCACTGCCACTGATACTTCGAAGAGCAAACACATTGCAGCACCTGGCAAACCTCCTATTCGCAGTCATCCTTCAGCAGTAGACAGTAAACGGAGTTCTAAAGTTTCTTCATCGGCAGGAAATCACTTAGCTGTTAGTGTTAACAACAAGAAGCTGAATGTCAGGCCAGCCACGTTAGGAGCTATTCCAGTTGTTGAACCGTCAACCTCTCAAGCTTCAGTAGGAAGGCAAAATGATACCAGTGAGGAAACACAAAATTTTCCCATGTCTGATGAAGAGAAGGCTGGCGTTGCTGCTGCAAAAACTGCTCCCCTTGCTGCTCTAGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732439" ref_strand="+" ref_description="SGN-E732439 [LB02AG02]">
      <seq>atttcaaattctctctgcaactttctcagattgtgaagaaatggctcgtactaagcagacagctcgtaaatcaaccggtggaaaggctccaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctcatcgttaccgacctggaactgttgctctccgtgaaatccgaaaatatcaaaagagcactgagcttctcatccggaagttgccattccaaaggcttgtccgcgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagcgtatttagtcggtctctttgaggacaccaacttgtgtgccatccatgctaagagagtcaccataatgcccaaggatattcaacttgcaagacgtattcgtggagaacgagcttaagctgttcacagtgctgattaatcaatctctttttggttattcgtgtatgtttttagccttaacgtaccgaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctggttttgattannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74821" stop="71816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74521" g_stop="74493" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74492" i_stop="74360" i_length="133">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74359" g_stop="74277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="112" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="189" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="280" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72874" g_stop="72523" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="631" r_length="351" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72522" i_stop="72133" i_length="390">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72132" g_stop="72116" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="648" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E732439" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74521" e_stop="74493"/>
          <exon e_start="74359" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72523"/>
          <exon e_start="72132" e_stop="72116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAATTCTCTCTGCAACTTTCTCAGGTAATGATTCTCTTCTCCGACGATCTTCGTTTCTTTTTCTGGTTATTGATACCGGCGACGACGTTTTTTCCTTGTTTGTAGAGCGATTTTTCATATATTTTTCTATTTGCTTAATCGTTTTTTTTCTCTTCAGATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAACATACATGACCAACAACATTGAGTTGTATTAAGTGAGACGTTGGAAAATGACATATGATTAAAAAAATCGTTTTTGAATCATTCTTTGTTCAATATTCATTATTATGACGCAACGCGCATGAAGGCATTGCTTTATTGTTCAATGGAATGTTCAGTTTGAGTTTACTAATTTATTTTCGATAGAATTATTGACGTACATTTCATCAAAAGTATATAATAATTGATCTTATAAATGACATATGTCACCCTCTTTCGAATCGATAATATGATCGAATCAAGGTCAAATTTGATTTAGGTAAATGCAAAGAATTAGTCAATAGGAAAATCAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>ATTTCAAATTCTCTCTGCAACTTTCTCAG.....................................................................................................................................ATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGCGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTCGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCACAGTGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCG-AACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGGTTTTGATTAN......................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544826" ref_strand="+" ref_description="SGN-E544826 [TUS-67-F19](-)">
      <seq>aatcaatctcttttgggttattggggtaggtttttacccttaaggtaccgaaactagtatattttttgtttgtgccgggatgtacatcaggggatgcatatttaaaggcccttattgtgttgctcaatacattgattaatatgaacagcggattttgattatgttgtttgtagggttcttttgaaaaaactctggatttcaagtggaaattttccccctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="72984" stop="32973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72684" g_stop="72459" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72458" i_stop="72164" i_length="295">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.354" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72163" g_stop="72116" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="274" r_length="48" r_score="0.646"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E544826" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72684" e_stop="72459"/>
          <exon e_start="72163" e_stop="72116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAACATACATGACCAACAACATTGAGTTGTATTAAGTGAGACGTTGGAAAATGACATATGATTAAAAAAATCGTTTTTGAATCATTCTTTGTTCAATATTCATTATTATGACGCAACGCGCATGAAGGCATTGCTTTATTGTTCAATGGAATGTTCAGTTTGAGTTTACTAATTTATTTTCGATAGAATTATTGACGTACATTTCATCAAAAGTATATAATAATTGATCTTATAAATGACATATGTCACCCTCTTTCGAATCGATAATATGATCGAATCAAGGTCAAATTTGATTTAGGTAAATGCAAAGAATTAGTCAATAGGAAAATCAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AATCAATCTCTTTTGGGTTATTGGGGTAGGTTTTTACCCTTAAGGTACCGAAACTAGTATATTTTTTGTTTGTGCCGGGATGTACATCAGGGGATGCATATTTAAAGGCCCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCGGATTTTGATTATGTTGTTTGTAGGGTTCTTTTGAAAAAACTCTGGATTTCAAGTGGAAATTTTCCCCCTAAAAAAA.......................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308533" ref_strand="-" ref_description="SGN-E308533 [cLEY-21-B18]">
      <seq>tttttttttaacctcatttttttttttttttttttttacgttgaatatttcgacttgaaatcgagagttatatcaaaagaaccatacaaacaacataatcaaaatcagctgttcatattaatcaatgtattgagcaacacaataaggtcctttagatatgcatccactgatgtacatccaggcacaaacaaaagatatactagtttcggtacgttaaggctaaaaacatacacgaataaccaaaaagagattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="32969" stop="72983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72222" g_stop="72243" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.636"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72244" i_stop="72450" i_length="207">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72451" g_stop="72683" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="255" r_length="233" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E308533" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72222" e_stop="72243"/>
          <exon e_start="72451" e_stop="72683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTATAAGATCAATTATTATATACTTTTGATGAAATGTACGTCAATAATTCTATCGAAAATAAATTAGTAAACTCAAACTGAACATTCCATTGAACAATAAAGCAATGCCTTCATGCGCGTTGCGTCATAATAATGAATATTGAACAAAGAATGATTCAAAAACGATTTTTTTAATCATATGTCATTTTCCAACGTCTCACTTAATACAACTCAATGTTGTTGGTCATGTATGTTTATTTATGTTGAATATTTCGACTTGAAATCGAGAGTTATATCAAAAGAACCATACAAACAACATAATCAAAATCAGCTGTTCATATTAATCAATGTATTGAGCAACACAATAAGGTCCTTTAGATATGCATCCACTGATGTACATCCAGGCACAAACAAAAGATATACTAGTTTCGGTACGTTAAGGCTAAAAACATACACGAATAACCAAAAAGAGATTGAT</genome_strand>
        <mrna_strand>TTTTTTTTTAACCTCATTTTTT...............................................................................................................................................................................................................TTTTTTTTTTTTTTTACGTTGAATATTTCGACTTGAAATCGAGAGTTATATCAAAAGAACCATACAAACAACATAATCAAAATCAGCTGTTCATATTAATCAATGTATTGAGCAACACAATAAGGTCCTTTAGATATGCATCCACTGATGTACATCCAGGCACAAACAAAAGATATACTAGTTTCGGTACGTTAAGGCTAAAAACATACACGAATAACCAAAAAGAGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236706" ref_strand="+" ref_description="SGN-E236706 [cLEL-7-G5](-)">
      <seq>gcacgaggaacgagccttaagctgttcaagatgctgattaatcaatctctttttggttattcgtgtatgtttttagccttaacgtaccgaaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctgattttgattatgttgtttgtatggttcttttgatataactctcgatttcaagtcgaaatattcaacataaataaacatacatgaccaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="73017" stop="71816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72722" g_stop="72442" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="283" polyA_stop="309"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E236706" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72722" e_stop="72442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGAGAACGAGC-TTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAACATACATGACCAACAAC</genome_strand>
        <mrna_strand>GCACGAGGAACGAGCCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAACATACATGACCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711484" ref_strand="+" ref_description="SGN-E711484 [FB02AE09]">
      <seq>gacgcgtaaaaatggctcgtactaagcagacagctcgtaaatcacccggtggaaaggctccaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctcatcgttaccgacctggaactgttgctctccgtgaaatccgaaaatatcaaaagagcactgagcttctcatccggaagttgccattccaaaggcttgtccgcgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagcgtatttagtcggtctctttgaggacaccaacttgtgtgccatccatgctaagagagtcaccataatgcccaaggatattcaacttgcaagacgtattcgtggagaacgagcttaagctgttcacagtgctgattaatcaatctctttttggttattcgtgtatgtttttagccttaacgtaccgaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctggttttgattatgtaaaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74656" stop="71816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74360" g_stop="74277" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="160" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="251" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72874" g_stop="72523" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="602" r_length="351" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="630"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E711484" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74360" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTAT</genome_strand>
        <mrna_strand>GA-CGCGTAAAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCACCCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGCGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTCGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCACAGTGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCG-AACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGGTTTTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717550" ref_strand="+" ref_description="SGN-E717550 [FC02AC06]">
      <seq>aatcggccgaattgagctttttaacactttcaaatttcaaattctctctgcaactttctcagattgtgaagaaatggctcgtactaagcagacagctcgtaaatcaaccggtggaaaggctccaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctcatcgttaccgacctggaactgttgctctccgtgaaatccgaaaatatcaaaagagcactgagcttctcatccggaagttgccattccaaaggcttgtccgcgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagcgtatttagtcggtctctttgaggacaccaacttgtgtgccatccatgctaagagagtcaccataatgcccaaggatattcaacttgcaagacgtattcgtggagaacgagcttaagctgttcacagtgctgattaatcaatctctttttggttattcgtgtatgtttttagccttaacgtaccgaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctggttttgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74842" stop="71816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74538" g_stop="74493" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="62" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74492" i_stop="74360" i_length="133">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74359" g_stop="74277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="145" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="222" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="313" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72874" g_stop="72525" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="662" r_length="349" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="717"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E717550" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74538" e_stop="74493"/>
          <exon e_start="74359" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTACACTTTCAAATTTCAAATTCTCTCTGCAACTTTCTCAGGTAATGATTCTCTTCTCCGACGATCTTCGTTTCTTTTTCTGGTTATTGATACCGGCGACGACGTTTTTTCCTTGTTTGTAGAGCGATTTTTCATATATTTTTCTATTTGCTTAATCGTTTTTTTTCTCTTCAGATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATT</genome_strand>
        <mrna_strand>CTTTTTAACACTTTCAAATTTCAAATTCTCTCTGCAACTTTCTCAG.....................................................................................................................................ATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGCGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTCGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCACAGTGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCG-AACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGGTTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728225" ref_strand="+" ref_description="SGN-E728225 [LA17AD09]">
      <seq>gacgatatggctcgtactaagcagacagctcgtaaatcaaccgagtggaaaggctccaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctcatcgttaccgacctggaactgttgctctccgtgaaatccgaaaatatcacaagagcactgagcttctcatccggaagttgccattccaaaggcttgtccgcgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagcgtatttagtcggtctctttgaggacaccaacttgtgtgccatccatgctaagagagtcaccataatgcccaaggatattcaacttgcaagacgtattcgtggagaacgagcttaagctgttcacagtgctgattaatcaatctctttttggttattcgtgtatgtatttagccttaacgtaccgaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctggttttgattacgtatgtataagtcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74654" stop="72216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74354" g_stop="74277" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="156" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="247" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72874" g_stop="72525" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="596" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E728225" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74354" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCG-GTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATT</genome_strand>
        <mrna_strand>GACGATATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGAGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCACAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGCGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTCGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCACAGTGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTATTTAGCCTTAACGTACCG-AACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGGTTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732773" ref_strand="+" ref_description="SGN-E732773 [LB03AD09]">
      <seq>gatgaaatggctcgtactaagcagacagctcgtaaatcaaccggtggaaaggctccaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctcatcgttaccgacctggaactgttgctctccgtgaaatccgaaaatatcaaaagagcactgagcttctcatccggaagttgccattccaaaggcttgtccgcgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagcgtatttagtcggtctctttgaggacaccaacttgtgtgccatccatgctaagagagtcaccataatgcccaaggatattcaacttgcaagacgtattcgtggagaacgagcttaagctgttcacagtgctgattaatcaatctctttttggttattcgtgtatgtttttagccttaacgtaccgaactagtatatcttttgtttgtgcctggatgtacatcagtggatgcatatctaaaggaccttattgtgttgctcaatacattgattaatatgaacagctggttttgattaaaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74654" stop="72224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74354" g_stop="74277" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="155" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="246" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72874" g_stop="72525" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="595" r_length="349" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="615"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E732773" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74354" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATT</genome_strand>
        <mrna_strand>GATGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGCGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTCGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCACAGTGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCG-AACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGGTTTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274434" ref_strand="+" ref_description="SGN-E274434 [cLEN-19-I5]">
      <seq>gattgtgaagaaatggctcgtactaagcagacagctcgtataatcaaccggtggaaaggcttcaaggaagcaacttgctacaaaggctgcaaggaagtcagcccctaccacaggaggagtgaagaagcctgatcgctaccgacctggaactgttgctctccgtgaaatccgaaaatatcaaaagagcactgagcttctcatccggaagatgcgcattccaaaggcttgtgcgtgaaattgctcaggattttaagacagatctgaggtttcaaagtcatgctgtgcttgcactccaagaagccgctgaagctgtatttagttggtctctttgaggacaccaacttgtgtgccatccatgctattagagtcaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74660" stop="72455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74360" g_stop="74277" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73631" g_stop="73555" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="162" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73451" g_stop="73361" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="254" r_length="92" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72874" g_stop="72755" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="375" r_length="121" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E274434" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74360" e_stop="74277"/>
          <exon e_start="73631" e_stop="73555"/>
          <exon e_start="73451" e_stop="73361"/>
          <exon e_start="72874" e_stop="72755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTA-AATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAGGTTGGTACTTTTTTGCTTTCATAGCGAAGTTATTCTTTTTTTTTTTTGTAATTTATGATTGAGTTTTCAAATATTTCCTTTCATAAGGTTGGAATGTATCTCTTACTGTCTCGTGTTTGATCCGGTATGAAGTAGCCTTTGTTAATCCTCTGTTTGGATGGTTGTTTCATAATGTATCGGGTTACATTGTATTTCGTATTGTATTGTTGTGATGAATACAATGTAGGTAAGGTAAAGGATAAAATGAAATCATTTGATAATAAGTAATGATGAAATGAGAAATATCAATTAGATAGCGACGCGATCACACCAAATCAGTCGTTACACAAAATGACACTTTTCATTGTTATGTAACAATGGATTTTATGATACAGTACAACAAAATTTAGGTTACAATCAAACAAACATTGTATTTAAACTTATAACACAATACTTATACATTAAGAAAAAATATCCAAACAAGTTGTTAGATAGTGCTTTACTTCTTTGAGCCCCCATGGAAACCGGGTGGAAACCAAATATTGATATTTTAAACTCTTTAACTAACTGATTTAGATTTACGTGGGCATGTATTAGATTTTGCAAATTTAGGAGGAATTTTTGTTATAGTTATGCTGATTAGGGTTCTTTTTTCTAATTTGGTAGGCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCGGTACTTTTTCAATCTCTCTTGTTTTGACATTGTTCTTTAACAATCATGTTTTTTCTTAATCTGATTCAGCGATTAATTACTATGCATGTTTAATTGTTTATAGTGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGC-CATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAGGTAATATCAGTCAGTTGCTCCCCTCAACACCAACTTATATGACATTATCTATTTTGGGATGTTTCTAAATATTGACATCATTTTACTTATAAATTGCTCAGGTCTCTGTGGTAAATGTAGAACCTGTGATGATTAGAGTATCATTTCGTTACTTTCTCCATTCTGATTTATATGTCATTGTTTCTGTTTGGGATGTTTTGAACTGTCTGACACTATTCTACTCATTAAAAAAATCATTGGAAACCATTATTTGTCTTTACAACTTTCAAGTATATAAATTCGCTAGAGTATTCACATTCTTAACATTTATGTGATGTTAACTCTCTTTCCACCCTGCTTTATTATTCTATTCTGTTATAGATTAATCGGTGCCAACTGAAACACCCTCTTAGAAGATGAAACAGAGGATGTATGTTTTTGTGTGCTTGAAAAAATAGTTGGTTTGGATGATAGTAACACTTCTTTTGATCTTCGTTTATAAAACAGACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGC-GTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATA</genome_strand>
        <mrna_strand>GATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTATAATCAACCGGTGGAAAGGCTTCAAGGAAGCAACTTGCTACAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTGATCGCTACCGACCTGGAACTGTTGCTCTCCG.......................................................................................................TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGATGCGCATTCCAAAGGCTTGTGCGTGAAATTGCTCAGGATTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCTGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTATTAGAGTCACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714616" ref_strand="+" ref_description="SGN-E714616 [FB11DG10]">
      <seq>cgatgatttgacaagagttatagtgagatctacagttcaattcatcaatggagggctatgtgtgggcaatagccgctgggttcaacgcagctcttgcagccatctctgccaaattcttcacctcccagctcatcaaatatggttgtgtcatattattcaatgtcacaatgtggggatgctatgtcaatagccttaaagctctatcatctctacaagctactgtgactaactttgcaaccaactttttatcatctggattggctggatttttgctttttcgggagccactaccaatccagtggtttgcaggcgcctcccttatcgtgcttggagttattgttttgagcaagtcaagcatagagaagaaaactcatacaagttagatttagagaaggtgtgagccaaatatcagatgtagattttaatggccttaacatgaactactgttgaattcatgtctcaaaatcagtttattttgcattattgtggctatgttgatataattgttgctcttgtaatattgcaatactgggactctctccatgttgtacgactctacgtgatcgtgatgtcactggtgaaattacgttgaatatgtcattgtcattgttagtacttagtcctaatttctatttgagtactgctttaaaattggttctttaatatacttttgcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="74990" stop="78465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75289" g_stop="75416" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75417" i_stop="76681" i_length="1265">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76682" g_stop="76852" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="299" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76853" i_stop="77794" i_length="942">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77795" g_stop="78164" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="677" r_length="378" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E714616" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75289" e_stop="75416"/>
          <exon e_start="76682" e_stop="76852"/>
          <exon e_start="77795" e_stop="78164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATTTGACAAGAGTTATAGTGAGATCTACAGTTCAATTCATCAATGGAGGGCTATGTGTGGGCAATAGCCGCTGGGTTCAACGCAGCTCTTGCAGCCATCTCTGCCAAATTCTTCACCTCCCAGGTCAAATACTTTCACTGATTGTTCCATCTTTACCCTTTTTTCTCCTTATTGTGATGATTAGCTGTGAGTGTTGGAATGAAATTGGTGTAAATAGAGCCGAATTGACGTAGACAATTCATGTGGCTTTAATGGGTGGATCTAGGATTTGAAGTTTATGAGTTAGTGTATCGAGCTCAGTTTAATATTACAGTAATAACTAGGTTTATTGTCAAATATTTATAGATATGATAAAAAGAAAAAAAAAAGGAGCTAATGAGTTCACGTGAATCCGTAGTCAGACCTTGGTGGATTTGGGATTGAGTTGTATGTTGTAGCTGTAGGATCTGAAATTCTGAATTGGGTCCATTTGTAAGATGAAGAAAATGCCTTTATTGAGTTTGAAATGGGATGAATTGAGCGGAGCCAAGATTGTCATTTGAAAATGTCTCTTACCAAGTATAAACAGTGTAATTTTCCACAAAGGGAATTCGGGCCCTTACTAGCTCCGCTCTTGAATAGTCTGATAGACTGGAAAAGATGGATTATTTTTGTGAAACATTATTTGGTCTGGACATGATTAATCACCGCTTGCTATCTAAAGTGCTACTTTTGTCCGTCTCTTGTTTTGGATCGAAATGTTGTCATGATCACTGATGTTTGCGTCAGGTAGGCTATCCACATTACACCCTCTTGGGGTGTGGCCCTTCTTTGGACCCTGCATGAATGCAATATGCTTTATGAATTCAGAAGTCTATGTTTGATTTCTGCAACATTTGTTACGTCTCATAATAATCAAATATAGATAGCTGGAAATATGAGTTCTCGACACATATATCTTGAAAAATTAGTAGTATTTGCATTGAGCTGAGCATTTGAAGGATTATCAGTCATCAGTGGGATGCCTTGTCTTTTTCAATATTTTACATTCTTAGTTGAGGGAGGAGTGAGGGAGGTTATTGAAATGGAAGAGTGGGACTATATAATCTGTTTCAGTCTGTTTACATGTGATGTACATTTCAACTGCAAACTAGATTGATGCTTCTACTTGAGTCATGTCCTGGATTGATCACGTCATGTTTTGAATTGATTCCATGTAATCTACTTCTGTAGCTTCAGTTCTTTGTCACTAAAGATCCTAGATTGTTTTCATGGTAAATTTTTGGCATAAATCTTTGCCACATTAAATTGTATAATGTCTATTGTCTATGTAAATTTGCTTAATCGTGTCACTAGTACTCATTCTTTGTTTCTGCTTCACTTTAATGTGATCCTTTTCAAATTCACAGCTCATCAAATATGGTTGTGTCATATTATTCAATGTCACAATGTGGGGATGCTATGTCAATAGCCTTAAAGCTCTATCATCTCTACAAGCTACTGTGACTAACTTTGCAACCAACTTTTTATCATCTGGATTGGCTGGATTTTTGCTTTTTCGGGAGCCACTACCAATCCAGGTAATTTGTGAAATTTGTGCTACTCTGTTTATGAACTATAGTATGATCCTCCGATCCCTCTTTTTGGTCAGTCCTCTCTTACTATTTTATGGAAATCCTGGTGTTGTTGCGCTGTTACATCTTGGCACCAATCACGAGTTCTCATCATATATTTCATAAACTTAATAAAATCAATACGGCCAATTGAAATTAATGTTTTTCTCTACATAAAAGGCAGTAATATACCATGGTTTGTAGACACTCGAAAGAGATTTCTTCTCTTTGGAGGAACATGAGACACTGGGCTATCCCCCCATTCAGCTATCTTAAGAGTTATACATCAAAAATATGATAAAAGGGGTAGGGATCTTGGACCTTTGACTGGGGTGGTAATGACCATACAATACGTTAGATGCGTTTCAACTTTTTTACAATACACAACTGTTTACACTAAAAATTAATCAGTTTCTGCAACAACAACATACCTAGTATACTCCACAAGTGGGGTCTAGAGAGGGTGGTGTGTACGCAGACCTTACCCCTAACTTGTGAAAGTAGAAAGGTTGTTTGTATAGACCCTAGGCTACGAGTAAAACATTTCAAAGCAGGTATTCAAAGGAAATAAAGTAAATGAACACGAGTTCTCTAACTATTTTGTCAATATCATTTATTTTTGTAGAACGTGTTCCTGCATATTTTTTTATAATAAGTACCAGTAGAGTTTCTCAAAATGAATGTTAGAGAACTTGTAGAAGTTCTAATTAAATCAGAAATGTGTTCCTATATGGTTGATATGGCTATTGGTTTTCCTACATGATAATAAACAATGTTCAAGTATCTATGCTTTTACATCAACTAAAACGTAGATACATCCCTGAACCCCGTTAGTGTTGACGATAGATCAACCTGTCCTATATGATGAAAATTATGCCATTGATCTATTAACTGGTATTGCTTTTGCAGTGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGC--TGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGT------TAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAAATTGGTTCTTTAATATACTCTTGCACA</genome_strand>
        <mrna_strand>CGATGATTTGACAAGAGTTATAGTGAGATCTACAGTTCAATTCATCAATGGAGGGCTATGTGTGGGCAATAGCCGCTGGGTTCAACGCAGCTCTTGCAGCCATCTCTGCCAAATTCTTCACCTCCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCAAATATGGTTGTGTCATATTATTCAATGTCACAATGTGGGGATGCTATGTCAATAGCCTTAAAGCTCTATCATCTCTACAAGCTACTGTGACTAACTTTGCAACCAACTTTTTATCATCTGGATTGGCTGGATTTTTGCTTTTTCGGGAGCCACTACCAATCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAGATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTGAATTCATGTCTCAAAATCAGTTTATTTTGCATTATTGTGGCTATGTTGATATAATTGTTGCTCTTGTAATATTGCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGGTGAAATTACGTTGAATATGTCATTGTCATTGTTAGTACTTAGTCCTAATTTCTATTTGAGTACTGCTTTAAAATTGGTTCTTTAATATACTTTTGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301963" ref_strand="+" ref_description="SGN-E301963 [cLEX-3-B6]">
      <seq>taccaatctagtggtttgcaggcgcctcccttatcgtgcttggagttattgttttgagcaagtcaagcatagagaagaaaactcatacaagttaaatttagagaaggtgtgagccaaatatcagatgtagattttaatggccttaacatgaactactgttaaattcatgtctcagaatcagtttattttgcactattgtggctgttgatataattgttgctcttgtaatattccaatactgggactctctccatgttgtacgactctacgtgatcgtgatgtcactgatgaaattacgttgaatatgtcattgttagtacttagtcctaatatctatttgaggactgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="77493" stop="78438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77795" g_stop="78137" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="354" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E301963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77795" e_stop="78137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</genome_strand>
        <mrna_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543147" ref_strand="+" ref_description="SGN-E543147 [TUS-64-N1]">
      <seq>ctaccaatccagtggtttgcaggcgcctcccttatcgtgcttggagttattgttttgagcaagtcaagcatagagaagaaaactcatacaagttaaatttagagaaggtgtgagccaaatatcagatgtagattttaatggccttaacatgaactactgttaaattcatgtctcagaatcagtttattttgcactattgtggctgttgatataattgttgctcttgtaatattccaatactgggactctctccatgttgtacgactctacgtgatcgtgatgtcactgatgaaattacgttgaatatgtcattgttagtacttagtcctaatatctatttgaggactgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="77490" stop="78438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77795" g_stop="78137" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="355" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E543147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77795" e_stop="78137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</genome_strand>
        <mrna_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548830" ref_strand="+" ref_description="SGN-E548830 [TUS-64-N1](-)">
      <seq>ctaccaatccagtggtttgcaggcgcctcccttatcgtgcttggagttattgttttgagcaagtcaagcatagagaagaaaactcatacaagttaaatttagagaaggtgtgagccaaatatcagatgtagattttaatggccttaacatgaactactgttaaattcatgtctcagaatcagtttattttgcactattgtggctgttgatataattgttgctcttgtaatattccaatactgggactctctccatgttgtacgactctacgtgatcgtgatgtcactgatgaaattacgttgaatatgtcattgttagtacttagtcctaatatctatttgaggactgctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="77490" stop="78438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77795" g_stop="78137" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="355" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E548830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77795" e_stop="78137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</genome_strand>
        <mrna_strand>TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340924" ref_strand="+" ref_description="SGN-E340924 [cTOF-5-O21]">
      <seq>aaaacactatagatatatcaaagtggatttgagtactgtaatattttttttccaaagggtaataaagaaactcaagaaagagagaggaagaaaacaaaaagatgctggtatgggtgttggtattggtgttgacagggtcgacggagctaatgatgagtgctcgtctttcaggttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttccttgatgagtatatgtcggttcagttggattgagggctgacgcttattttgacattaactacctgcatatatcatatggatgacagcgggaatcgcgataatggaaggcataaaccacctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcagcaatagcagaacgaaataatgccatcatggagcgggataatgcctttgctacacttcagtatcgtgaaacctctatgactgctggtcagattgtccgtggagtgaaacatatgcaccatcctcagcaacatgtacatcaccagccacatatgggagaaccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="79438" stop="84216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79738" g_stop="79872" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79873" i_stop="82076" i_length="2204">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82077" g_stop="82168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="227" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="369" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83605" g_stop="83916" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="681" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E340924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79738" e_stop="79872"/>
          <exon e_start="82077" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTATAGATATATCAAAGTGGATTTGAGTACTGTAATATTTTTTTTCCAAAGGGTAATAAAGAAACTCAAGAAAGAGAGAGGAAGAAAACAAAAAGATGCTGGTATGGGTGTTGGTATTGGTGTTGACAGGTAAAAGATAAAATTAATGAAAAATACCAAAAAAGAAAAAAAAAAAAAAAGGAAAGAAGAGTTGATGGGTGATGTCAATGTTGCTCTTTCTTTCAACTACTGCTCTTTCTTCACTGATATTTATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTGGTAAGTTGATGTTTGTTTATAGCTAATTCAGTTGTGGTTGAATGAAATTCTGAATCTTGTAGGCTTTGATGAGTGTTTGAGCTTGAATTTTGTTTATGAATTGTTTTTCTTTTTTTACTTGTTTTGGTTTTGGGGTTAATTGGTTTCTCAGAATCTTGATTAGCTGATTGTTTAATTGCTGCTGAAGTTCATTTTCCTGTTTGTATGATTGATCTTCAAGATTTCATTTTTAAGGTGCCCATTTCTGGATTTGCTTATTTTTTGGTTATAAAGATTGGTTCTTTCTATGTAGAAAGACTTGGTTTTTTTGTTAGAACTTTCTTTTTTTATGCTTTCGTTTAGATTAAGTCAAGGCATTGTTTAATGGAACACTCATTAGCCTTAAAACCTTTCCATTTTTAACAACAGAATGTATGTGGTTGAGCCGATACAGTGAACACTTTATAGCTGGAAGAAAGTGTTAGTAGAGTGTATGTTGTTAACAGATAATCATAAAGCTCTGATTTTTATTCCTTTTGGCTGTTGGGGGTCTTGGGGGGGGGGGGGCGGTGCTTATGAGTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACCATCTGACTGATGTAACTGACTAGATGAAAGAGCTAAGCTTCTTCCCTTTTTCTTTAAATACATATTCTTTCCATGCAACTTATCTTAGCACCAACAATAGTTTTGAACTTGTACATAATTGGGGTGATATTTTCTTAGCACAATAGAACAAGTTAATCATGCTGGTTTTACGTGCCAAAATCTTCCCAAGATCTCTATGGAATTTGTAAAATCCGTGCACCCACTGCTGGAATAGTTTTTAACATACTTAGGCCTAACATACTCTCATCTGGGATTAGCTTATTCATATTTTCTCTACCTTTCAGCAACTCCTATGAATTTAACTTTATACGTTTTATGTCTTGCCAATCTGTTGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACA</genome_strand>
        <mrna_strand>AAAACACTATAGATATATCAAAGTGGATTTGAGTACTGTAATATTTTTTTTCCAAAGGGTAATAAAGAAACTCAAGAAAGAGAGAGGAAGAAAACAAAAAGATGCTGGTATGGGTGTTGGTATTGGTGTTGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208837" ref_strand="+" ref_description="SGN-E208837 [cLEC-51-G19]">
      <seq>gttgatgggtgatgtcaatgttgctctttctttcaactactgctctttcttcactgatatttatctctttcaagttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttcctttatgagtatatgtcggttcagttggattgagggctgacgcttattttgacattaactacctgcatatatcatatggatgacagcgggaatcgcgataatggaaggcataaaccacctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcaccaatagcagaacgaaataatgccatcatggagcgcgataatgcctttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="79633" stop="84103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79933" g_stop="80005" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80006" i_stop="82112" i_length="2107">
            <donor d_prob="0.183" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82113" g_stop="82168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="129" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="271" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83605" g_stop="83803" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="470" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E208837" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79933" e_stop="80005"/>
          <exon e_start="82113" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="83803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGGGTGATGTCAATGTTGCTCTTTCTTTCAACTACTGCTCTTTCTTCACTGATATTTATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTGGTAAGTTGATGTTTGTTTATAGCTAATTCAGTTGTGGTTGAATGAAATTCTGAATCTTGTAGGCTTTGATGAGTGTTTGAGCTTGAATTTTGTTTATGAATTGTTTTTCTTTTTTTACTTGTTTTGGTTTTGGGGTTAATTGGTTTCTCAGAATCTTGATTAGCTGATTGTTTAATTGCTGCTGAAGTTCATTTTCCTGTTTGTATGATTGATCTTCAAGATTTCATTTTTAAGGTGCCCATTTCTGGATTTGCTTATTTTTTGGTTATAAAGATTGGTTCTTTCTATGTAGAAAGACTTGGTTTTTTTGTTAGAACTTTCTTTTTTTATGCTTTCGTTTAGATTAAGTCAAGGCATTGTTTAATGGAACACTCATTAGCCTTAAAACCTTTCCATTTTTAACAACAGAATGTATGTGGTTGAGCCGATACAGTGAACACTTTATAGCTGGAAGAAAGTGTTAGTAGAGTGTATGTTGTTAACAGATAATCATAAAGCTCTGATTTTTATTCCTTTTGGCTGTTGGGGGTCTTGGGGGGGGGGGGGCGGTGCTTATGAGTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACCATCTGACTGATGTAACTGACTAGATGAAAGAGCTAAGCTTCTTCCCTTTTTCTTTAAATACATATTCTTTCCATGCAACTTATCTTAGCACCAACAATAGTTTTGAACTTGTACATAATTGGGGTGATATTTTCTTAGCACAATAGAACAAGTTAATCATGCTGGTTTTACGTGCCAAAATCTTCCCAAGATCTCTATGGAATTTGTAAAATCCGTGCACCCACTGCTGGAATAGTTTTTAACATACTTAGGCCTAACATACTCTCATCTGGGATTAGCTTATTCATATTTTCTCTACCTTTCAGCAACTCCTATGAATTTAACTTTATACGTTTTATGTCTTGCCAATCTGTTGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTA</genome_strand>
        <mrna_strand>GTTGATGGGTGATGTCAATGTTGCTCTTTCTTTCAACTACTGCTCTTTCTTCACTGATATTTATCTCTTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTTATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCACCAATAGCAGAACGAAATAATGCCATCATGGAGCGCGATAATGCCTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317030" ref_strand="+" ref_description="SGN-E317030 [cTOA-27-M1]">
      <seq>tgatatttatctctttcaagttagggttttgagttttgaccctctttctttcttgatttttattttttctcagatatgtatcagctctgctatgtaagctttacatgtagtctttaatgggtgtatcttctttttctactttttgtgtattttgttgggtcgacggagctaatgatgagtgctcgtctttcaggttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttccttgatgagtatatgtcggttcagttggattgagggctgacgcttattttgacattaactacctgcatatatcatatggatgacagcgggaatcgcgataatggaaggcataaaccacctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcagcaatagcagaacgaaataatgccatcatggagcgggataatgcctttgctacacttcagtatcgtgaaacctctatgactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="79687" stop="84136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79987" g_stop="80143" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80144" i_stop="82076" i_length="1933">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82077" g_stop="82168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="249" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="391" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83605" g_stop="83836" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="623" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E317030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79987" e_stop="80143"/>
          <exon e_start="82077" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="83836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTGGTAAGTTGATGTTTGTTTATAGCTAATTCAGTTGTGGTTGAATGAAATTCTGAATCTTGTAGGCTTTGATGAGTGTTTGAGCTTGAATTTTGTTTATGAATTGTTTTTCTTTTTTTACTTGTTTTGGTTTTGGGGTTAATTGGTTTCTCAGAATCTTGATTAGCTGATTGTTTAATTGCTGCTGAAGTTCATTTTCCTGTTTGTATGATTGATCTTCAAGATTTCATTTTTAAGGTGCCCATTTCTGGATTTGCTTATTTTTTGGTTATAAAGATTGGTTCTTTCTATGTAGAAAGACTTGGTTTTTTTGTTAGAACTTTCTTTTTTTATGCTTTCGTTTAGATTAAGTCAAGGCATTGTTTAATGGAACACTCATTAGCCTTAAAACCTTTCCATTTTTAACAACAGAATGTATGTGGTTGAGCCGATACAGTGAACACTTTATAGCTGGAAGAAAGTGTTAGTAGAGTGTATGTTGTTAACAGATAATCATAAAGCTCTGATTTTTATTCCTTTTGGCTGTTGGGGGTCTTGGGGGGGGGGGGGCGGTGCTTATGAGTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACCATCTGACTGATGTAACTGACTAGATGAAAGAGCTAAGCTTCTTCCCTTTTTCTTTAAATACATATTCTTTCCATGCAACTTATCTTAGCACCAACAATAGTTTTGAACTTGTACATAATTGGGGTGATATTTTCTTAGCACAATAGAACAAGTTAATCATGCTGGTTTTACGTGCCAAAATCTTCCCAAGATCTCTATGGAATTTGTAAAATCCGTGCACCCACTGCTGGAATAGTTTTTAACATACTTAGGCCTAACATACTCTCATCTGGGATTAGCTTATTCATATTTTCTCTACCTTTCAGCAACTCCTATGAATTTAACTTTATACGTTTTATGTCTTGCCAATCTGTTGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTG</genome_strand>
        <mrna_strand>TGATATTTATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746101" ref_strand="+" ref_description="SGN-E746101 [GI|47105301]">
      <seq>gatctctttcaagttagggttttgagttttgaccctctttctttcttgatttttattttttctcagatatgtatcagctctgctatgttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttccttgatgagtatatgtcggttcagttggattgagggctgacgcttattttgacattaactacctgcatatatcatatggatgacagcgggaatcgcgataatggaaggcataaaccacctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcagcaatagcagaacgaaataatgccatcatggagcgggataatgcctttgctacacttcagtatcgtgaaacctctatgactgctggtcagattgtccgtggagtgaaacatatgcaccatcctcagcaacatgtacatcaccagccacatatgggagaaccaacatataaccccagagaaatgcacatggttgaagccataccagtttcccaacctgctccggagccagcaaagccccgtcgaaacaaaagagccaaggagccaaaggcagcaacaggttccaagaagactccaaaagcatcaaagaaagtaaaaagggaaactgaagatcttaaccaaaccacatatggcaagtctccagagtggaagggtgcgcaagagatggttggggcaagcgatgaccttaacagacagttatctgtggcaaaacccgactggaaggatcaggacctcgggctcaatcaagttgcttttgatgaaacaaccatgccagtcccagtctgttcctgcaccggagtcttgagaccttgctacaaatggggaaatggaggttggcaatcttcatgttgcacaaccaatttgtcgatgtatcctctaccagctgttcccaacaaacgacatgctcgaattggtggtagaaaaatgagtggaagtgcattcaccaagctgcttagtcgtctggcagccgaaggccatgatctatcaaatccagttgatcttaagaacaactgggcaaagcatgggacgaatcgctacgtcaccatcaagtaatgcttccaaagtcttcaatctaggacggtatacctcaacatcgtttacatattatgttttctgttcatcaacttcctttagcccctatgtaagtttgtcatcgttctaaaatgttagctggattcggagttggatcaacgagagataactgtaaagaagcctgtattcaggatactttgcaacaacgttgatgttaaatgtattgaatatctagtatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="79695" stop="129880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79994" g_stop="80079" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80080" i_stop="82112" i_length="2033">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82113" g_stop="82168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="142" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="284" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83605" g_stop="84737" g_length="1133"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="1417" r_length="1133" r_score="0.999"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84738" i_stop="85103" i_length="366">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85104" g_stop="85124" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1418" r_stop="1438" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E746101" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79994" e_stop="80079"/>
          <exon e_start="82113" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="84737"/>
          <exon e_start="85104" e_stop="85124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTGGTAAGTTGATGTTTGTTTATAGCTAATTCAGTTGTGGTTGAATGAAATTCTGAATCTTGTAGGCTTTGATGAGTGTTTGAGCTTGAATTTTGTTTATGAATTGTTTTTCTTTTTTTACTTGTTTTGGTTTTGGGGTTAATTGGTTTCTCAGAATCTTGATTAGCTGATTGTTTAATTGCTGCTGAAGTTCATTTTCCTGTTTGTATGATTGATCTTCAAGATTTCATTTTTAAGGTGCCCATTTCTGGATTTGCTTATTTTTTGGTTATAAAGATTGGTTCTTTCTATGTAGAAAGACTTGGTTTTTTTGTTAGAACTTTCTTTTTTTATGCTTTCGTTTAGATTAAGTCAAGGCATTGTTTAATGGAACACTCATTAGCCTTAAAACCTTTCCATTTTTAACAACAGAATGTATGTGGTTGAGCCGATACAGTGAACACTTTATAGCTGGAAGAAAGTGTTAGTAGAGTGTATGTTGTTAACAGATAATCATAAAGCTCTGATTTTTATTCCTTTTGGCTGTTGGGGGTCTTGGGGGGGGGGGGGCGGTGCTTATGAGTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACCATCTGACTGATGTAACTGACTAGATGAAAGAGCTAAGCTTCTTCCCTTTTTCTTTAAATACATATTCTTTCCATGCAACTTATCTTAGCACCAACAATAGTTTTGAACTTGTACATAATTGGGGTGATATTTTCTTAGCACAATAGAACAAGTTAATCATGCTGGTTTTACGTGCCAAAATCTTCCCAAGATCTCTATGGAATTTGTAAAATCCGTGCACCCACTGCTGGAATAGTTTTTAACATACTTAGGCCTAACATACTCTCATCTGGGATTAGCTTATTCATATTTTCTCTACCTTTCAGCAACTCCTATGAATTTAACTTTATACGTTTTATGTCTTGCCAATCTGTTGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGTATGATGGCTCTGTTCATAGTTATTAGCTTCTTTTATTAGTTTCAAGATTATCAATGGTTGAAAATCATAATCTGGAGATGTCTTTTTGAAATATTTTATATCGATTCATATATACGTCCATTGCGTTACAAGTGTGATTTGTTATAGCATATAAATATGAATTTTTTATTTGCTATATGTGAAAGTTGACAAGCTCAATTTTGAGAAGACACTGACCAGGAAAATTGTTCAATAATTCTTTTTATAAAATATCACATGTTACATCAATTCAGCAATCAAGCTCATTATGTTGTCTTTCTTGTCATCTCACAAATGATAAATAAGCTAGAGATACAGAGATAGTATAGTTAATTCTCTAATGATAAGATCAAAAGAGAAACTAATAAA</genome_strand>
        <mrna_strand>GATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACGTCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT..............................................................................................................................................................................................................................................................................................................................................................................ATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726863" ref_strand="+" ref_description="SGN-E726863 [LA13AB12]">
      <seq>gatttttattttttctcagatatgtatcagctctgctatgtaagctttacatgtagtctttaatgggtgtatcttctttttttactttttatgtattttgttggttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttccttgatgagtatatgtcggttcagttggattgagggctgacacttattttgacattaactacctgcatatatcgtatggatgacagcgggaatcgcgataatggaaggcataaaccgcctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcagcaatagcagaacgaaataatgccatcatggagcgggataatgcctttgctacacttcagtatcgtgaaacctctatgactgctggtcagattgtccgtggagtgaaacatatgcaccatcctcagcaacatgtacatcaccagccacatatgggagaaccaacatataaccccagagaaatgcacatggttgaagccataccagtttcccaacctgctccggagccagcaaagccccgtcgaaacaaaagagccaaggagccaaaggcagcaacaggttccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="79741" stop="84335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80041" g_stop="80143" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80144" i_stop="82112" i_length="1969">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82113" g_stop="82168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="159" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="301" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83605" g_stop="84035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="732" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E726863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80041" e_stop="80143"/>
          <exon e_start="82113" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="84035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTGGTAAGTTGATGTTTGTTTATAGCTAATTCAGTTGTGGTTGAATGAAATTCTGAATCTTGTAGGCTTTGATGAGTGTTTGAGCTTGAATTTTGTTTATGAATTGTTTTTCTTTTTTTACTTGTTTTGGTTTTGGGGTTAATTGGTTTCTCAGAATCTTGATTAGCTGATTGTTTAATTGCTGCTGAAGTTCATTTTCCTGTTTGTATGATTGATCTTCAAGATTTCATTTTTAAGGTGCCCATTTCTGGATTTGCTTATTTTTTGGTTATAAAGATTGGTTCTTTCTATGTAGAAAGACTTGGTTTTTTTGTTAGAACTTTCTTTTTTTATGCTTTCGTTTAGATTAAGTCAAGGCATTGTTTAATGGAACACTCATTAGCCTTAAAACCTTTCCATTTTTAACAACAGAATGTATGTGGTTGAGCCGATACAGTGAACACTTTATAGCTGGAAGAAAGTGTTAGTAGAGTGTATGTTGTTAACAGATAATCATAAAGCTCTGATTTTTATTCCTTTTGGCTGTTGGGGGTCTTGGGGGGGGGGGGGCGGTGCTTATGAGTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACCATCTGACTGATGTAACTGACTAGATGAAAGAGCTAAGCTTCTTCCCTTTTTCTTTAAATACATATTCTTTCCATGCAACTTATCTTAGCACCAACAATAGTTTTGAACTTGTACATAATTGGGGTGATATTTTCTTAGCACAATAGAACAAGTTAATCATGCTGGTTTTACGTGCCAAAATCTTCCCAAGATCTCTATGGAATTTGTAAAATCCGTGCACCCACTGCTGGAATAGTTTTTAACATACTTAGGCCTAACATACTCTCATCTGGGATTAGCTTATTCATATTTTCTCTACCTTTCAGCAACTCCTATGAATTTAACTTTATACGTTTTATGTCTTGCCAATCTGTTGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAA</genome_strand>
        <mrna_strand>GATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTTTACTTTTTATGTATTTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACACTTATTTTGACATTAACTACCTGCATATATCGTATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCGCCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539711" ref_strand="+" ref_description="SGN-E539711 [TUS-59-J19]">
      <seq>gttactctttaggttaaattgcatcttgtaatgaaatttttgagggttgttcaagtttatcctgaagcagcctttctcaatgtggcatatccattagtagttgaaaccacagcagtttatttttttgttggataaaaataattgactcgtaggtaatccgagagcttcgtaggtgggatttttttggcaaaggaaagtcgagagaaagggtgatagctattctagcaagtcttctgcggaggagtagcactaggctagtgagttattagactagtctcgattcctcaaggttgtagtagctgtaatagtagttgaaaaacctcacgtcccgagtgggctaagtccacagtaagctgtagtcgtggaagataactaatgactactaattttgttcattttattgcaagttttttagcatgagaagatacttatattgtaaatagacctgctacttagttccagtcagtaggaacatgttgtagaaactgcaatatgtcctaattgatcattcatgttttcgatgaagagaccacactcatttaagaaagtgctatttgtaagattatctcaactctttatgagtttgacatttgcaagattatcataccaaattggcaacatggagcttccattttttcgtactggcccttgatagtttgatatggaattaagctgtatttatggaatcattttgtctcaatcaatcaagcattatgagttatggtgcaatgttgtttcagaagtgaatattgcataaattcttttttcaatatgtattttaacttggattttatctttgaatcagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="80402" stop="81811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80702" g_stop="81511" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E539711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80702" e_stop="81511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACC</genome_strand>
        <mrna_strand>GTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTTGAATCAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282063" ref_strand="+" ref_description="SGN-E282063 [cLES-2-H12]">
      <seq>ttactctttaggttaaattgcatcttgtaatgaaatttttgagggttgttcaagtttatcctgaagcagcctttctcaatgtggcatatccattagtagttgaaaccacagcagtttatttttttgttggataaaaataattgactcgtaggtaatccgagagcttcgtaggtgggatttttttggcaaaggaaagtcgagagaaagggtgatagctattctagcaagtcttctgcggaggagtagcactaggctagtgagttattagactagtctcgattcctcaaggttgtagtagctgtaatagtagttgaaaaacctcacgtcccgagtgggctaagtccacagtaagctgtagtcgtggaagataactaatgactactaattttgttcattttattgcaagttttttagcatgagaagatacttatattgtaaatagacctgctacttagttccagtcagtaggaacatgttgtagaaactgcaatatgtcctaattgatcattcatgttttcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="80403" stop="81525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80703" g_stop="81225" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E282063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80703" e_stop="81225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGA</genome_strand>
        <mrna_strand>TTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367004" ref_strand="+" ref_description="SGN-E367004 [cLPT-6-J5]">
      <seq>tgaaatctgctcctgtgattgccttagctttccataattcacaactaatgtatgcttctattttcctcatttgggatgggttttttttatatgaagtcgagataattctaatgtccggtgtctaatggaacaacatatgtgtattctaccatgaccaaagcattacaaatcttgtgttcttttctcatttctgcttccttatgtttctttagggtcgacggagctaatgatgagtgcttgtctttcaggttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcagtgttggtttttccttgatgagtatatgtcggttaagttggattgagggctgacgcttattttgacattaactacctgcatatatcgtatggatgacagcgggaatcgcgataatggaaggcataaaccgcctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="81565" stop="83966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81865" g_stop="82168" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="446" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83605" g_stop="83666" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="508" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E367004" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81865" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="83666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGC</genome_strand>
        <mrna_strand>TGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCACAACTAATGTATGCTTCTATTTTCCTCATTTGGGATGGGTTTTTTTTATATGAAGTCGAGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTTGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTAAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCGTATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCGCCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203484" ref_strand="+" ref_description="SGN-E203484 [cLEC-15-N19]">
      <seq>agctctgctatgttctttatgattcagccttgactaagagaatgcagatctgaactgttggtagtcggtgttggtttttccttgatgagtatatgtcggttcagttggattgagggctgacgcttattttgacattaactacctgcatatatcatatggatgacagcgggaatcgcgataatggaaggcataaaccacctcagggtcagtggttgatgcagcatcagccatcaatgaagcagataatggccatcatggcagaaagagatgctgccatacaagagaggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcagcaatagcagaacgaaataatgccatcatggagcgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="81806" stop="84091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82113" g_stop="82168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="67" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83230" g_stop="83371" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="209" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83605" g_stop="83791" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="396" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E203484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82113" e_stop="82168"/>
          <exon e_start="83230" e_stop="83371"/>
          <exon e_start="83605" e_stop="83791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCGGTAAGTTTGTCATATTGATTCATTTATTCATTCAAAGCTCATATATGTGCATGCTTCCTAAAATGTAATGGATTTATTATGTTGGATTTTTTCCCTTTTCGGCAACTCTTATGTTTCCCTTATTTCTTTTGTTAAGATCATTTAAGGGTGAGGGGTTTGACTCTTGATTCTTCCTGCTCATGTGTTCTTTAATTATTTGAGAGTGGTTGGTCTGCTTTGATATGCTTTTCCTTGAGCCGAGGTTCTGTCTAAAACAACCTCTCTATGTGTAAAGGTATGGATAAAGCCTACGGACACAACGCCTATTTACGCTCTACCCTCCCCAAAACCCACTTGTGGGATTGTATAGTTTATAATGTTGTATAATATGGAGAAGAAGGGGAACCTAGGAGCAATGGTAGTTGTCTTTGTTTGACCTATAGGTCACGTGTTCAAGCCGTGGAAGCAACTACTAATATTTCTATTAGGTTAGACCGTCTACATCACACCCCTTGTGGTGCGGTCCTTCTCTCGGACAGTACATGAATGCGAGATGCTTTGTGGACCGAGCTTTGCTATATAAGATAGATATAAAAGGAGAAATTGAGAGGTTGTGTTGATCATCATTGTTGGTTAGCTAGAAAAAACGAAAGTTATAAACATGCGTGGTGAGCGCATAAAAACCGTCGTGGTTGTAATCAACTTGAATCTGAAAGATCTAATAGAACCCTGGCAACCTAAGGAAATCTAGATGTAGGTACAACACAAGAACATAACTACTATAAATTATAAGAATTAACTAAATAGCCATTCACCCAACTGACTAAACTAAAAATAGGCCGTAGATGTATAATATAGTGTACAATATAATTCATGTATAATATGTGTATGATCGTTAATAATCAATGTATATCGGCTAGATAAAGTAAACTGTAAATCTGCCTGGCTATTTGTGTGAAGATCCCTTAAAGATAGTTGTGTCATTTACTTTCTGCACTATAATTTCTGTGTTGGGTATTCAGGGACACTATCCTTCCAAGAAGAAGCTGTGACCTATTTGATTATCTAACATTTGGCTACAGGTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAGGTATGTAGCAGGAGTTGAGGTTGATTGCTTAAGTCTACTTTCTTAATTTGGATCTTAAGTATGATTCTCATGTGTTGTAACCAGAGGTGGGTCCTCAATTTAAACTTGATGGTTTGAACCTTTATGTTCGATACGGGTTCAAAATGTACTGTTTTATTGAAACTTCCGGGATTTTCCATATATATATATATGTCTATGCTTTGTGTCGAAATGCTAAATTTTCCATGTTTCAGTGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATA</genome_strand>
        <mrna_strand>GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG.........................................................................................................................................................................................................................................TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706882" ref_strand="+" ref_description="SGN-E706882 [FA31AG11]">
      <seq>aggaatctggccctttctgaaaaaaaggctgccttggcagagcgtgacatggctatcctgcagcgggattcggcaatagcagaacgaaataatgccatcatggagcgggataatgcctttgctacacttcagtatcgtgaaacctctatgactgctggtcagattgtccgtggagtgaaacatatgcaccatcctcagcaacatgtacatcaccagccacatatgggagaaccaacatataaccccagagaaatgcacatgggtgaagccataccagtttcccaacctgctccggagccagcaaagccccgtcgaaacaaaagagccaaggagccaaaggcagcaacaggttccaagaagactccgaaagcatcaaagaaagtaaaaagggaaactgaagatcttaaccaaacaacttatggcaagtctccagagtggaagggtgcacaaaagatggttggggcaagcgatgaccttaacagacagttatctgtggcaaaacccgactggaaggatcaggacctcgggctcaatcaagttgctttcgatgaaacaaccatgccagtcccagtctgttcctgcaccggagtcttgagaccttgctacaaatggggaaatggaggttggcaatcttcatgttgcacaaccaatttgtcgatgtatcctctaccagctgttcccaacaaacgacatgctcgaattggtggtagaaaaatgagtggaagtgcattccccaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="83380" stop="84721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83680" g_stop="84421" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E706882" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83680" e_stop="84421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGC</genome_strand>
        <mrna_strand>AGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCGGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGGTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCGAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACAACTTATGGCAAGTCTCCAGAGTGGAAGGGTGCACAAAAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTCGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCCCCAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202726" ref_strand="+" ref_description="SGN-E202726 [cLEB-1-I7]">
      <seq>gcacgaggcaaagccccgtcgaaacaaaagagccaaggagccaaaggcagcaacaggttccaagaagactccaaaagcatcaaagaaagtaaaaagggaaactgaagatcttaaccaaaccacatatggcaagtctccagagtggaagggtgcgcaagagatggttggggcaagcgatgaccttaacagacagttatctgtggcaaaacccgactggaaggatcaggacctcgggctcaatcaagttgcttttgatgaaacaaccatgccagtcccagtctgttcctgcaccggagtcttgagaccttgctacaaatggggaaatggaggttggcaatcttcatgttgcacaaccaatttgtcgatgtatcctctaccagctgttcccaacaaacgacatgctcgaattggtggtagaaaaatgagtggaagtgcattcaccaagctgcttagtcgtctggcagccgaaggccatgatctatcaaatccagttgatcttaagaacaactgggcaaagcatgggacgaatcgctacatcaccatcaagtaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="83676" stop="84826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83973" g_stop="84526" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E202726" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83973" e_stop="84526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCT</genome_strand>
        <mrna_strand>GCACGAGGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548265" ref_strand="+" ref_description="SGN-E548265 [TUS-59-J19](-)">
      <seq>gccagcaaagccccgtcgaacaaaagagccaaggagccaaaggcagcaacaggttccaagaagactccaaaagcatcaaagaaagtaaaaagggaaactgaagatcttaaccaaaccacatatggcaagtctccagagtggaagggtgcgcaagagatggttggggcaagcgatgaccttaacagacagttatctgtggcaaaacccgactggaaggatcaggacctcgggctcaatcaagttgcttttgatgaaacaaccatgccagtcccagtctgttcctgcaccggagtcttgagaccttgctacaaatggggaaatggaggttggcaatcttcatgttgcacaaccaatttgtcgatgtatcctctaccagctgttcccaacaaacgacatgctcgaattggtggtagaaaaatgagtggaagtgcattcaccaagctgcttagtcgtctggcagccgaaggccatgatctatcaaatccagttgatcttaagaacaactgggcaaagcatgggacgaatcgctacatcaccatcaagtaatgcttccaaagtcttcaatctaggacggtatacctcaacatcgtttacatattatgttttctgttcatcaacttcctttagcccctatgtaagtttgtcatcgttctaaaatgttagctggattcggagttggatcaacgagagataactgtaaagaagcctgtattcaggatactttgcaacaacgttgatgttaaatgtattgaatatctagtaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="83676" stop="85038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83976" g_stop="84737" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="779"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E548265" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83976" e_stop="84737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</genome_strand>
        <mrna_strand>GCCAGCAAAGCCCCGTCG-AACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744900" ref_strand="+" ref_description="SGN-E744900 [GI|1838975]">
      <seq>ttcacttcttctctactcttctctttcatatcagtacaagttattttcattttctcttacaaattcaaccgtaatcaccgccattttcagcgggaaattcaccttctctccaaaatcccattttttcccctataaccccaccccccacaacttcactttcatcaatgtttgcacgtttgtctctcatcatattcaactgtagctcctttaaattttgactataaactttcaggtactccgttttcttccttgctctgcttttctcaatcttgtttttcattcatctgttgtttggggttttgtgtttgtttgaattggattgggttgaaacagttttttttttgggtgggtttaaggagttttctatttagggttttgctgggagctgaaattttgatttatttaatgagaattgctgaagttctttgattattacgaagaaatagcatttggggtgtcggaaaaattgaatcttttgcgggttttatttgttgatttttgatggctcagtctaattctaagccacctatgagtagtcagaattttggtgttggagctgtatctcatgtgaggtcgttatctcaatcgagtattttctcgaatagttgtttgcccccattgagtccttttcctcctagtgagccggggatggtgtcgggtcgttctagcttgaaagatatatccatggaggaagcagatgtgaattctcaaggtgtaggagttgtgtcttcgtttacgagggatggtcttcctcctcggaaggggcatcgtcgatctaatagtgatgttccattgggattctcggctatgattcagtcttcacctcagttgatgcctataagtggtcagaaggttttagggagagcagtgagtcttggggatagcaatggaaagattgatgagaggaaaccaaagggagaggttacagatgagttgttgttttcctacatgaatttggaaaatatagagacattgaacggttctggcacgaaggacagagataaggacagcattgtcagtgggacaaaggtaaccggttctgagagcagcaataatgaagcagaaagtgttatgaaagggaataatgttagtatccaaccaacaaatttaagggaaggaaccaagaggagcgctgatgcgaatattgctccagctgcacgtcactttaggagtctttccatggatagtgctattggaaattttcactatggcgatgagtcaccaaatttaccaacttctctgatgatgcgttccggtcagctttcaccaagtaattcaggaaatgaaagttcgagcaagcacaatcttgacttcggaaattctgaatttagtgaagctgagatgaagaagattatggcagatgaaagacttgctgagattgcagttttagatcccaagcgtgctaaaaggattttggctaatcgtctgtctgctgctcgatccaaggagcgaaaaacacgttacatctcagaattggaacacaaggttcaaaagctacagacagaaacaactaccttatccacccaagttacaatcctgcagaaaaattttgttgagatttcaagcctgaacagtgagctgaaattccgcatccaagccatggagcaacaggcacagcttagagatgctctgcatgaggcattaactgcagaagtccaacgtctaaagcttgctgctggggaacatagggaggaaggacggttgcctaataacatgacacaacagacaccagtgaagcataatatattccagatgcagcgtcagcagcctagtcaaatgcaacaattatctgttggtaaagcatctgcggcttcagcaacacctgcatccgcctagtgggcgaagattaaagcctttgaggaggtgaagattatctctacatgaagcctaaaagtttattacttcaattatcggtcttacatgctacgcacaaacagtgagaaactaagctttcagatagtattatatccatataagtttcttatgtgtgtctggctacaatttatactatatgtagtgaatcattattttgttctttggaaatgactgtatcaataaattggagtcaaactttgtggtgccaatgttttctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="90161" stop="94246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90461" g_stop="91869" g_length="1409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1409" r_length="1409" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91870" i_stop="92013" i_length="144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92014" g_stop="92146" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1542" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92147" i_stop="92231" i_length="85">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92232" g_stop="92316" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1543" r_stop="1627" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92317" i_stop="93477" i_length="1161">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93478" g_stop="93946" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1628" r_stop="2096" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E744900" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2096</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90461" e_stop="91869"/>
          <exon e_start="92014" e_stop="92146"/>
          <exon e_start="92232" e_stop="92316"/>
          <exon e_start="93478" e_stop="93946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCTTCTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGTATGGAAATAGATGCTAATGTATTCTAGTTTATATTTGTATCCCATTAAGAAGCATAAACTTGAGTTATCCATGAAAAATTGAAAAAATATATATAAGGAGGGTGCTACATATACAATTGTACCTGATAGTTTCTTTCCTCAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGGTGCCTGTAGAAAATATTGTGGTGTACCTTCAATAGTTCTTTTATGAACTTCAGTCTGTTTACTGGATTTTCATTCTTGTTACAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGGTATTACCGTTCCAATTTCTTTTTTCTTTTGTTTTCCAAGTCCCTAGTGTGTTGCAAAAAGGTATCTAGAATAAAATAAGATATGTTCCATAGTATAATCGTTTTAAATTAGAATATACTCTAATGTTTTTTTTTACCTCTTAAAATTAAATTCATCAAACTTGGAGAAGTTTGGAAATAATTGGGTGTTTACTGAATACAGCTGGATAATTAGTTTATAGAAAGAGAAGTTTGCAAATTTAAGTTTTATAAAAAGAAAAGCTTGGAACTTGGCCTGATTTGAGCTTCATGGTTCTAGCCTTCTACATATTGAATTTGTTGCTATTGTTTGAAGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGTGAACATCTGATGCACCTACCCATAAAGATGGATATTCATAACTTTAGCTTTCCGCTGCAGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA</genome_strand>
        <mrna_strand>TTCACTTCTTCTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCGTTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAG................................................................................................................................................GATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACCCAAGTTACAATCCTGCAG.....................................................................................AAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATCCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314380" ref_strand="+" ref_description="SGN-E314380 [cTOA-21-O21]">
      <seq>tctactcttctctttcatatcagtacaagttattttcattttctcttacaaattcaaccgtaatcaccgccattttcagcgggaaattcaccttctctccaaaatcccattttttcccctataaccccaccccccacaacttcactttcatcaatgtttgcacgtttgtctctcatcatattcaactgtagctcctttaaattttgactataaactttcaggtactccgttttcttccttgctctgcttttctcaatcttgtttttcattcatctgttgtttggggttttgtgtttgtttgaattggattgggttgaaacagttttttttttgggtgggtttaaggagttttctatttagggttttgctgggagctgaaattttgatttatttaatgagaattgctgaagttctttgattattacgaagaaatagcatttggggtgtcggaaaaattgaatcttttgcgggttttatttgttgatttttgatggctcagtctaattctaagccacctatgagtagtcagaattttggtgttggagctgtatctcatgtgaggtcgttatctcaatcgagtattttctcgaatagttgtttgcccccattgagtccttttcctcctagtgagccggggatggtgtcgggtcattctagcttgaaagaatatccatggaggaagcagatgtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="90172" stop="91466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90472" g_stop="91166" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E314380" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90472" e_stop="91166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATT</genome_strand>
        <mrna_strand>TCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGA-ATATCCATGGAGGAAGCAGATGTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746502" ref_strand="+" ref_description="SGN-E746502 [GI|47104248]">
      <seq>tattttcattttctcttacaaattcaaccgtaatcaccgccattttcagcgggaaattcaccttctctccaaaatcccattttttcccctataaccccaccccccacaacttcactttcatcaatgtttgcacgtttgtctctcatcatattcaactgtagctcctttaaattttgactataaactttcaggtactccgttttcttccttgctctgtttttctcaatcttctttttcattcatctgttgtttggggttttgtgtttgtttgaattggattgggttgatacagttttttattggggtttaaggagtttttttttttatctagggtttttctgggagctgaaattttgatttatttaatgagaattgctgaagttctttgattattacgaagaaatagcatttggggtgtcggaaaaattgaatcttttgcgggttttatttgttgatttttgatggctcagtctaattctaagccacctatgagtagtcagaattttggtgttggagctgtatctcatgtgaggtctttatctcaatcgagtattttctcgaatagttgtttgccaccattgagtccttttcctcctagtgagccggggatggtgtcgggtcattctagcttgaaggatatatccatggaggaaatagatgtgaattctcaaggtgtaggagttgtgtcttcgtttacgagggatggtcttcctcctcggaaggggcatcgtcgatctaatagtgatgttccattgggattctcggctatgattcagtcttcacctcagttgatgcctagaagtggtcagaaggttttagggagagcagtgagtcttggggatagcaatggaaagattgatgagaggaaaccaaagggagaggttacagatgagttgttgttttcctacatgaatttggaaaatatagagacattgaacggttctggcacggaggacagagataaggacagcattgtcagtgggacaaaggtaagcggttctgagagcagcaataatgaagcagaaagtgttatgaaagggaatactgttagtatccaaccaacaaatttaagggaaggaaccaagaggagcgctgatgcgaatattgctccagctgcacgtcactttaggagtctttccatggatagtgctattggaaattttcactatggcgatgagtcaccaaatgtaccaacttctctgatgatgcgttccggtcagctttcaccaagtaattcaggaaatgaaagttcgagcaagcacaatcttgacttcggaaattctgaatttagtgaagctgagatgaagaagattatggcagatgaaagacttgctgagattgcagttttagatcccaagcgtgctaaaaggatactggctaatcgtctgtccgctgctcgatccaaggagcgtaaaacacgttacatctcagaattggaacacaaggttcaaaagctacagacagaaacaactaccttatccacacaagttaccatcctgcagaaaaattttgttgagatttcaagcctgaacagtgagctgaaattccgcatccaagccatggagcaacaggcacagcttagagatgctctgcatgaggcattaactgcagaagtccaacgtctaaagcttgctgctggggaacatagggaggaaggacggttgcctaataacatgacacaacagacgccagtgaagcataatatgttccagatgcagcgtcagcagcctagtcaaatgcaacaattatctgttggtaaagcatctgcggcttcagcaacacctgcatccgcctagtgggtgaacattaaagcctttgaggaggtgaagattatctctacatgaagcctaaaagtttattacttcaattatcggtcttacatgctacgcacaaacagtgagaaactaagctttcagatagtattatatttatataagtttcttatgtgtctggctacaatttatactatatgtagtgaatcattattttgttctttggaaatgactgtatcaataaattggagtcaaactttgtggtgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="90202" stop="94234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90502" g_stop="91869" g_length="1368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1369" r_length="1369" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91870" i_stop="92013" i_length="144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92014" g_stop="92146" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1370" r_stop="1502" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92147" i_stop="92231" i_length="85">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92232" g_stop="92316" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1503" r_stop="1587" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92317" i_stop="93477" i_length="1161">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93478" g_stop="93933" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1588" r_stop="2041" r_length="454" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2042" polyA_stop="2055"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E746502" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>2042</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90502" e_stop="91869"/>
          <exon e_start="92014" e_stop="92146"/>
          <exon e_start="92232" e_stop="92316"/>
          <exon e_start="93478" e_stop="93933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTA-AGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGTATGGAAATAGATGCTAATGTATTCTAGTTTATATTTGTATCCCATTAAGAAGCATAAACTTGAGTTATCCATGAAAAATTGAAAAAATATATATAAGGAGGGTGCTACATATACAATTGTACCTGATAGTTTCTTTCCTCAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGGTGCCTGTAGAAAATATTGTGGTGTACCTTCAATAGTTCTTTTATGAACTTCAGTCTGTTTACTGGATTTTCATTCTTGTTACAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGGTATTACCGTTCCAATTTCTTTTTTCTTTTGTTTTCCAAGTCCCTAGTGTGTTGCAAAAAGGTATCTAGAATAAAATAAGATATGTTCCATAGTATAATCGTTTTAAATTAGAATATACTCTAATGTTTTTTTTTACCTCTTAAAATTAAATTCATCAAACTTGGAGAAGTTTGGAAATAATTGGGTGTTTACTGAATACAGCTGGATAATTAGTTTATAGAAAGAGAAGTTTGCAAATTTAAGTTTTATAAAAAGAAAAGCTTGGAACTTGGCCTGATTTGAGCTTCATGGTTCTAGCCTTCTACATATTGAATTTGTTGCTATTGTTTGAAGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGTGAACATCTGATGCACCTACCCATAAAGATGGATATTCATAACTTTAGCTTTCCGCTGCAGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCA</genome_strand>
        <mrna_strand>TATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGTTTTTCTCAATCTTCTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGATACAGTTTTTTATTGGGGTTTAAGGAGTTTTTTTTTTTATCTAGGGTTTTTCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCTTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCACCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAGGATATATCCATGGAGGAAATAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTAGAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGGAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAAGCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATACTGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATGTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAG................................................................................................................................................GATACTGGCTAATCGTCTGTCCGCTGCTCGATCCAAGGAGCGTAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACCATCCTGCAG.....................................................................................AAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACGCCAGTGAAGCATAATATGTTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGTGAACATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTTATATAAGTTTCTTA--TGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365420" ref_strand="+" ref_description="SGN-E365420 [cLPT-2-A24]">
      <seq>attttcattttctcttacaaattcaaccgtaatcaccgccattttcagcgggaaattcaccttctctccaaaatcccattttttcccctataaccccaccccccacaacttcactttcatcaatgtttgcacgtttgtctctcatcatattcaactgtagctcctttaaattttgactataaactttcaggtactccgttttcttccttgctctgtttttctcaatcttctttttcattcatctgttgtttggggttttgtgtttgtttgaattggattgggttgatacagttttttattggggtttaaggagtttttttttttatctagggtttttctgggagctgaaattttgatttatttaatgagaattgctgaagttctttgattattacgaagaaatagcatttggggtgtcggaaaaattgaatcttttgcgggttttatttgttgatttttgatggctcagtctaattctaagccacctatgagtagtcagaattttggtgttggagctgtatctcatgtgaggtctgtatctcaatcgagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="90203" stop="91353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90503" g_stop="91053" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E365420" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90503" e_stop="91053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTA-AGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTAT</genome_strand>
        <mrna_strand>ATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGTTTTTCTCAATCTTCTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGATACAGTTTTTTATTGGGGTTTAAGGAGTTTTTTTTTTTATCTAGGGTTTTTCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCTGTATCTCAATCGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255764" ref_strand="+" ref_description="SGN-E255764 [cLEG-36-J22]">
      <seq>tctaagccacctatgagtagtcagaattttggtgttggagctgtatctcatgtgaggtcgttatctcaatcgagtattttctcgaatagttgtttgcccccattgagtccttttcctcctagtgagccggggatggtgtcgggtcattctagcttgaaagatatatccatggaggaagcagatgtgaattctcaaggtgtaggagttgtgtcttcgtttacgagggatggtcttcctcctcggaaggggcatcgtcgatctaatagtgatgttccattgggattctcggctatgattcagtcttcacctcagttgatgcctataagtggtcagaaggttttagggagagcagtgagtcttggggatagcaatggaaagattgatgagaggaaaccaaagggagaggttacagatgagttgttgttttcctacatgaatttggaaaatatagagacattgaacggttctggcacgaaggacagagataaggacagcattgtcagtgggacaaaggtaaccggttctgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="90677" stop="91806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90977" g_stop="91506" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E255764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90977" e_stop="91506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAG</genome_strand>
        <mrna_strand>TCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297267" ref_strand="+" ref_description="SGN-E297267 [cLET-29-E6]">
      <seq>agggaaggaaccaagaggagcgctgatgcgaatattgctccagctgcacgtcactttaggagtctttccatggatagtgctattggaaattttcactatggcgatgagtcaccaaatttaccaacttctctgatgatgcgttccggtcagctttcaccaagtaattcaggaaatgaaagttcgagcaagcacaatcttgacttcggaaattctgaatttagtgaagctgagatgaagaagattatggcagatgaaagacttgctgagattgcagttttagatcccaagcgtgctaaaaggattttggctaatcgtctgtctgctgctcgatccaaggagcgaaaaacacgttacatctcagaattggaacacaaggttcaaaagctacagacagaaacaactaccttatccacacaagttacaatcctgcagaaaaattttgttgagatttcaagcctgaacagtgagctgaaattccgcatccaagccatggagcaacaggcacagcttagagatgctctgcatgaggcattaactgcagaagtccaacgtctaaagcttgctgctggggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="91271" stop="93836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91571" g_stop="91869" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91870" i_stop="92013" i_length="144">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92014" g_stop="92146" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="432" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92147" i_stop="92231" i_length="85">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92232" g_stop="92316" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="517" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92317" i_stop="93477" i_length="1161">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.061" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93478" g_stop="93536" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="576" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E297267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91571" e_stop="91869"/>
          <exon e_start="92014" e_stop="92146"/>
          <exon e_start="92232" e_stop="92316"/>
          <exon e_start="93478" e_stop="93536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGTATGGAAATAGATGCTAATGTATTCTAGTTTATATTTGTATCCCATTAAGAAGCATAAACTTGAGTTATCCATGAAAAATTGAAAAAATATATATAAGGAGGGTGCTACATATACAATTGTACCTGATAGTTTCTTTCCTCAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGGTGCCTGTAGAAAATATTGTGGTGTACCTTCAATAGTTCTTTTATGAACTTCAGTCTGTTTACTGGATTTTCATTCTTGTTACAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGGTATTACCGTTCCAATTTCTTTTTTCTTTTGTTTTCCAAGTCCCTAGTGTGTTGCAAAAAGGTATCTAGAATAAAATAAGATATGTTCCATAGTATAATCGTTTTAAATTAGAATATACTCTAATGTTTTTTTTTACCTCTTAAAATTAAATTCATCAAACTTGGAGAAGTTTGGAAATAATTGGGTGTTTACTGAATACAGCTGGATAATTAGTTTATAGAAAGAGAAGTTTGCAAATTTAAGTTTTATAAAAAGAAAAGCTTGGAACTTGGCCTGATTTGAGCTTCATGGTTCTAGCCTTCTACATATTGAATTTGTTGCTATTGTTTGAAGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGTGAACATCTGATGCACCTACCCATAAAGATGGATATTCATAACTTTAGCTTTCCGCTGCAGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACAT</genome_strand>
        <mrna_strand>AGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAG................................................................................................................................................GATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAG.....................................................................................AAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275711" ref_strand="+" ref_description="SGN-E275711 [cLEN-18-D2]">
      <seq>agaatttgggaggaagggaattttaatggttcccgtgaactcataattaagtagatcagtttcgtgaagtacttttatgtgaggtgcaaaaagagaagaataaattagtctacaatggcatatacagcctttgaaaggggaaaatagggggagaaggactatggcctgctggaaggaagacggggagagagatggtcgaaatccattttagatctgtgaagataggcgaagaatactctgatggaagccaaataggaaacatactattcgtgtcagggaagcctatgagataaacggaaaataattagggacccaagttcacaataataactcaatgatatgtgaaaatgatgcacaatcaatatctctttgattacttttgtttggttggttggaaatttcaaaatgtaagcaatgtgaaaatttcaatatccctcactgagcactgaaaaacccgagccagataaccaaaatatttgatgtacctgtttcagtaataatatttgattctaaccagtaactagctggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="92349" stop="93479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92649" g_stop="93179" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E275711" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92649" e_stop="93179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCT</genome_strand>
        <mrna_strand>AGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTCTACAATGGCATATACAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTCGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGATGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273609" ref_strand="+" ref_description="SGN-E273609 [cLEN-6-G21]">
      <seq>tatggcctgctggaaggaagacggggagagagatggtagaaatccattttagatctgcgaagataggcgaagaatactctgaaggaagccaaataggaaacatactattcgtgtcagggaagcctatgagataaacggaaaataattagggacccaagttcacaataataactcaatgatatgtgaaaatgatgcacaatcaatatctctttgattacttttgtttggttggttggaaatttcaaaatgtaagcagtgtgaaaatttcaatatccctcactgagcactgaaaaacccgagccagataaccaaaatatttgatgtacctgtttcagtaataatatttgattctaaccagtaactagctggcctactcaggaggcatgattttcttaaacagttccacaacatcagtatctcctattgaaaaacattatattttccaaaaagcaggtttgcctgtgtttgtttgattatctcaggatacatttatattaatctgaaggaaggacaagttatactgttctagtcatttggattgaccagggacaatgtccaaatcacattttatactcgacattcaagacatatagatatgctgatactatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="92508" stop="93717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92808" g_stop="93417" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E273609" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92808" e_stop="93417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGT</genome_strand>
        <mrna_strand>TATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGCGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAGTGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690114" ref_strand="+" ref_description="SGN-E690114 [LH_Ea02K16]">
      <seq>cgtgtttcccttctaaaacttcttttgccgccgattactgacaaatctgtgtttttttcactaatttttgtgggttttgtggtactgacgttgaggtttatcaagatctgatttttaaaaactttttttttttgaattttttgaccggtgagttcgccggagatgtcggaagtgctggtggtgaaaggtggggagttgttgttttgtggaagtacttggtgggattctgttggtctccggaaaggtttgacggaggggaatttggtgtcaccaactaggcttcgtccgcttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="94687" stop="95577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94985" g_stop="95277" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E690114" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94985" e_stop="95277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTTCCTACTAAAACTTCTTTTGCCGCCGATTACTGACAAATCTCTGTTTTTTTCACTAATTTTTGTGGGTTTTGTGGTACTGACGTTGAGGTTTAGCAAGATCTGATTTTTAAAAAC--TTTTTTTTTGAATTTTTTGACCGTTGAGTTCGCCGGAGATGTCGGAAGTGGTGGTGGTGAAAGGTGGGGAGTTGTTGTTTTGTGGAAGTACTTGCTGGGATTCTGTTGGTCGCCGGAAAGGTTTGACGGAGGGGAATTTGGTGTCGCCGACGAGGCTTCGTCCGCTTGTTG</genome_strand>
        <mrna_strand>CGTGTTTCCCTTCTAAAACTTCTTTTGCCGCCGATTACTGACAAATCTGTGTTTTTTTCACTAATTTTTGTGGGTTTTGTGGTACTGACGTTGAGGTTTATCAAGATCTGATTTTTAAAAACTTTTTTTTTTTGAATTTTTTGACCGGTGAGTTCGCCGGAGATGTCGGAAGTGCTGGTGGTGAAAGGTGGGGAGTTGTTGTTTTGTGGAAGTACTTGGTGGGATTCTGTTGGTCTCCGGAAAGGTTTGACGGAGGGGAATTTGGTGTCACCAACTAGGCTTCGTCCGCTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540608" ref_strand="+" ref_description="SGN-E540608 [TUS-60-P13]">
      <seq>cggttatgggaggcttggtcatcgagaacagaaggacgagtttgctcctcgacgagttgatgtttttacacggcagaatgtcttgcctccagatgcaatagtttcagcaggttctgccagctcatcatgtactgccggaggagggcagctttacatgtggggaaaaattaagagcacaggagatgattcgatgtatcccaaacctcttctggatttgagtgggtggaacctccgatgtatggattctggctatatgcaccactttgttggtgctgattcctcttgcataagttggggccttgcacagtgtggggagctgggttatggaccacatggacagaaatcttctgcagttcctaagaaggtggacattttagatggcatgcatgttatcagtgttgcttgtggatttgcccactccatggttgttattgataggacaaatgttgaggatcgacttgagcagcttgatgtatatgatggcaaggcttctgaggaagtgggggcagaacctgtgagtgaatctccagcttctaaaaagactaccaaaaaggcatctgcgaaggcgcctgcaaagtcaaataaacggaagaagtcaaaagatgcatctgaatctgaagatgaggaagaggaaaatagtgatgatgaaagtgatgactatgaggaacaatcgaatgggcgggccaagtcttccggcaggggtcgaggaaaggctgctggcaaagctacagctgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="98876" stop="103413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99031" g_stop="99042" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99043" i_stop="99177" i_length="135">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99178" g_stop="99302" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="137" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99303" i_stop="100336" i_length="1034">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100337" g_stop="100418" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100419" i_stop="100866" i_length="448">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100867" g_stop="100989" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="342" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100990" i_stop="101076" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101077" g_stop="101130" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="396" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101131" i_stop="101217" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101218" g_stop="101287" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="466" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101288" i_stop="101500" i_length="213">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101501" g_stop="101534" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="101535" i_stop="102874" i_length="1340">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="102875" g_stop="103113" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="739" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E540608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99031" e_stop="99042"/>
          <exon e_start="99178" e_stop="99302"/>
          <exon e_start="100337" e_stop="100418"/>
          <exon e_start="100867" e_stop="100989"/>
          <exon e_start="101077" e_stop="101130"/>
          <exon e_start="101218" e_stop="101287"/>
          <exon e_start="101501" e_stop="101534"/>
          <exon e_start="102875" e_stop="103113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTATGGGAGGTTCGTACATCCTATTTCATATTTGCATATTCAGATCTATGTTAATGGACGTCTGTTGAACCGCCTTGGCTTTCCATGCTCTTTTTGGGCCCTTATTATAATAAACATGAAATGTTTGATTTTTTTGGATTACAGGCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCGGTATGATTCGTCTTGTTTTCTCTCCATTCTGTTTTGATATCATTATTGAAATCTTATCCAGCGCACTTATAAGTTACTGTGTATTCACATGAGATGACATCATATTTGATATCTCTATTAGCTGCACTATTTTACACAACTTTTTGTTTCCAAAAAAATCTTTCCGCAAGTTGTCCAAACAGCTCAAAGTATAAGTTGAATGAGTATTCATTCAAATGAGTGAATTGCCTTTATTAAATCTATGTTCTGACCAACTATGACTGTATATATAGTGTTTGCTCATTTAGTTATTGCTTTGAGAAGTGTGAACATCTAGCAAGCTGACAATTATATGTAAAAAATATGTAAAATTAATGTGCGGTTATATATGGTTTAGTATGGATTACTTGTGAAAATAGGTAAACGCTAATCTAATCCATGTTAATGCTTAACGAGTTCGATTAATTTCAAAATTTTGAAAACTCAAGTAGTTCGAGTATTTTCACATTAGTAACTCATGATAGTCTGTCTTTATTGCGGATTTGGTATTGGATATGTTTTGCAAAGCTTACATAGGTGGAGTTTAGAGTTTGAGTAATCATTGGTGAATGGTGATGAAAAAAAAGAAAATGTCCAAATAAAAAAAACATGATGCTAAATAGAAACAGCCTTTCTACCTTTGAGGTAGAGGTAATGTTTGCGTACACTCTATCTTCCCCGAATCCCCTTTTGGGACTACACTGGGTATTTTGTTGTATAATTGTAGTAATAGTATTTAAATATTATTATTATTAACTATTATTTTGTATGTAATTAATTTATTTTTCATTTTATTTTTATATGGTATGATGATGACATCAGTTTGAACTTAAATGGAGATAATTATTCATATAGCTGACCTCAACTTGGTTGGGGCTGAGACATATAGTTGTTGTTGAAGTAAATTTATGTTTGAAATTTGCGCTGCAAGCCTGCAAGTAATATGAAGATATGATGAGGTCACGTTCTACTAATTGCAAATGACTTGGCACTTCTAATAAAATATTCTTGTGCAGGAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAGGTTATGATGTTTACAGCATTTGCATCTCCAATTTTTTATTTTGGTCATATAGTATTAGTGTAGATACATCATGAGTTGCATGTGTGATATATTCCACTTTTTTGGTTGAATTATTATTTATCCAAGATTTCTGGTTAGAACCATCTGCAATAACATATATGAAGATGGAGTTCAAATTTTCTTTTCCTTGTGTCTCGTGACTAGGGGTGATGGAGTGATTTCATTGCAAAGTCCTAGCAGAGAGTCTCTACCCTTGTATTTAATTATGAGATTCAATATTTCATGTTGGAATGTTATTTAAAATCAATCACATGGTAATAATGTATTGTTGTTTCTGCCCCCATAATCATTGGCTTGGATTGTTTTAAACTGGATATTCTCTTTTCAGAAGCACAATATTTTTTTCTTTGGTCGCTAAGTCTATATGACTGATAATCTGTATTTCTAGTGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAAGTAGGTTTGATTCATATCTTGTGTTTTACTTTTCTTTTCGGTGACTTGTGTGCGTTTTGCTCATTTATTTTGTCTATTTTTCTAAAGATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAGGTTAGTGTATTTCTGTTTAAAAAAGAAATTTTGGAAGATGGAACTTTACATCAGAGTCTGAATCCTAGTGCGTTCCTTTTTGTGTAGTGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAGGTAATGTTATGGTTACAAGGTAGTGTTGCTTGTGAATTAGAATATGATTTTTTCAGTTTATATGTACAGGTTTTTGGTTGAGTGTAATATTTGTTTGTGGATGGGTGTTGGTGTGTGTCTGGGGGTGCTGATACATACATCAGTTTCAATTTTTCTTTATTTGTATTTATTTGCTCGTGTAAGTTATCTAATTTCTCCCGTTTTACCTGACAGCTTGATGTATATGATGGCAAGGCTTCTGAGGAAGGTATAGGTCTAAGCTTCATCTATCTTCATAAGTTTTAGCTAATTGTACTATTTCATTTGGAAAATATACTGGTTTTCCTCTGAATTTGCTTCAAGGGCAGTTGACTTAAGTAGCCATTGAATTGCTAATTCCTTGGGAGATGAAAGAACAAGGAGTCTGTTAATGATGTTCAATTCATCTACTTTGTCCTTGTGTCCTTATCTGTTTTCGATACAATGCAGGATAAGGTTTGATTATATATGCTATTTGCAAATAATAATATGTCAAAGAGTCCATATGACATCTACATTCAGACAATTTATATATATATGTTCAATTTCAAGGACAATAGCTTGATATATGAAGATTTAATGTGCAGGACAAAAAATTGTTGCTAAGTATAGGAGAATATCATGATTAGGTGAAAGTGAAGTGAAACTAGATTAGTTTTTGTGGTGCCTAGTACAGACATCAAATATGTACATTTAGGCTTCTAGGAATATATAGTGATAGATGCAATATAACAATTAGGATAAATTAAAGGACTGTGCTGTGATAGAAGTCATCTAACAAGCTACAGTCAAGTTTTATAGAACGGTTGTGAGGCTAGTAATGTTGTATTGGGGTGAATATAGGTCTGCAAAGCCCACATGTCCTCGAGATGAATGCCATAGATGTTGATATCATTGGACATAGAGGATACACATAGAGAATTTTGCTTGAGACACTTTTGCCATGTCTTACAGACTTCGAGATGTATCATCTGCAGGCACAACTATATGATAGTTTGAAGGTGCAACAATATGCTTGAATTTCATTTAAAATGATAATTGAAAATAATGAGCTAGACTTGAAATCACATGTGTTTGGTTTTTTTAAAAAAGATTTTACAATTTAGCAAAATCAGTGTTAACTTGCCTAATAACTAATTGCATGAAAGAATAGGAATCTTAGTGTTAAACTGTTAATACCAACTAGTTTGGATTAATCACTTAGTTGTTGTTTCTTATGTTTGGTTGTTTATTAGGATTTTTCTTTTCTATTGTGGTCAGAGACATATTATTTTGGTGGAGGATAAGTATTGAGATTTGCAAATGCTCTAGTGTCAAAACAGTCTTAATTTCTCTTAAAAGACAAATCTTAAAATTGGAATAATATAACAAATTGTGTTGTCAAAAAAATAATATAACAATTTGTGTCAAATTTTTCCGATTTGTTTTATCGAAATCCTTGTACACGGACATGACAGGTGAAAGGTTATACTTCTCTTGTTGAACTGAGGAGATAGTTGGCATGCAACCCTATTTATTTTACAATCATTTACCTTTCTTACTATAGTTGCAAATTGTTCTTTGCTGCAGTGGGGGCAGAACCTGTGAGTGAATCTCCAGCTTCTAAAAAGACTACCAAAAAGGCATCTGCGAAGGCGCCTGCAAAGTCAAATAAACGGAAGAAGTCAAAAGATGCATCTGAATCTGAAGATGAGGAAGAGGAAAATAGTGATGATGAAAGTGATGACTATGAGGAACAATCGAATGGGCGGGCCAAGTCTTCCGGCAGGGGTCGAGGAAAGGCTGCTGGCAAAGCTACAGCTGCTAAA</genome_strand>
        <mrna_strand>CGGTTATGGGAG.......................................................................................................................................GCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAA.......................................................................................ATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAG.......................................................................................TGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAG.....................................................................................................................................................................................................................CTTGATGTATATGATGGCAAGGCTTCTGAGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGCAGAACCTGTGAGTGAATCTCCAGCTTCTAAAAAGACTACCAAAAAGGCATCTGCGAAGGCGCCTGCAAAGTCAAATAAACGGAAGAAGTCAAAAGATGCATCTGAATCTGAAGATGAGGAAGAGGAAAATAGTGATGATGAAAGTGATGACTATGAGGAACAATCGAATGGGCGGGCCAAGTCTTCCGGCAGGGGTCGAGGAAAGGCTGCTGGCAAAGCTACAGCTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289677" ref_strand="+" ref_description="SGN-E289677 [cLET-4-A23]">
      <seq>ggttatgggaggcttggtcatcgagaacagaaggacgagtttgctcctcgacgagttgatgtttttacacggcagaatgtcttgcctccagatgcaatagtttcagcaggttctgccagctcatcatgtactgccggaggagggcagctttacatgtggggaaaaattaagagcacaggagatgattcgatgtatcccaaacctcttctggatttgagtgggtggaacctccgatgtatggattctggctatatgcaccactttgttggtgctgattcctcttgcataagttggggccttgcacagtgtggggagctgggttatggaccacatggacagaaatcttctgcagttcctaagaaggtggacattttagatggcatgcatgttatcagtgttgcttgtggatttgcccactccatggttgttattgataggacaaatgttgaggatcgacttgagcagcttgatgtatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="98876" stop="101815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99032" g_stop="99042" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99043" i_stop="99177" i_length="135">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99178" g_stop="99302" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="136" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99303" i_stop="100336" i_length="1034">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100337" g_stop="100418" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="218" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100419" i_stop="100866" i_length="448">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100867" g_stop="100989" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="341" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100990" i_stop="101076" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101077" g_stop="101130" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="395" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101131" i_stop="101217" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101218" g_stop="101287" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="465" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="101288" i_stop="101500" i_length="213">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="101501" g_stop="101515" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="480" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E289677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99032" e_stop="99042"/>
          <exon e_start="99178" e_stop="99302"/>
          <exon e_start="100337" e_stop="100418"/>
          <exon e_start="100867" e_stop="100989"/>
          <exon e_start="101077" e_stop="101130"/>
          <exon e_start="101218" e_stop="101287"/>
          <exon e_start="101501" e_stop="101515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATGGGAGGTTCGTACATCCTATTTCATATTTGCATATTCAGATCTATGTTAATGGACGTCTGTTGAACCGCCTTGGCTTTCCATGCTCTTTTTGGGCCCTTATTATAATAAACATGAAATGTTTGATTTTTTTGGATTACAGGCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCGGTATGATTCGTCTTGTTTTCTCTCCATTCTGTTTTGATATCATTATTGAAATCTTATCCAGCGCACTTATAAGTTACTGTGTATTCACATGAGATGACATCATATTTGATATCTCTATTAGCTGCACTATTTTACACAACTTTTTGTTTCCAAAAAAATCTTTCCGCAAGTTGTCCAAACAGCTCAAAGTATAAGTTGAATGAGTATTCATTCAAATGAGTGAATTGCCTTTATTAAATCTATGTTCTGACCAACTATGACTGTATATATAGTGTTTGCTCATTTAGTTATTGCTTTGAGAAGTGTGAACATCTAGCAAGCTGACAATTATATGTAAAAAATATGTAAAATTAATGTGCGGTTATATATGGTTTAGTATGGATTACTTGTGAAAATAGGTAAACGCTAATCTAATCCATGTTAATGCTTAACGAGTTCGATTAATTTCAAAATTTTGAAAACTCAAGTAGTTCGAGTATTTTCACATTAGTAACTCATGATAGTCTGTCTTTATTGCGGATTTGGTATTGGATATGTTTTGCAAAGCTTACATAGGTGGAGTTTAGAGTTTGAGTAATCATTGGTGAATGGTGATGAAAAAAAAGAAAATGTCCAAATAAAAAAAACATGATGCTAAATAGAAACAGCCTTTCTACCTTTGAGGTAGAGGTAATGTTTGCGTACACTCTATCTTCCCCGAATCCCCTTTTGGGACTACACTGGGTATTTTGTTGTATAATTGTAGTAATAGTATTTAAATATTATTATTATTAACTATTATTTTGTATGTAATTAATTTATTTTTCATTTTATTTTTATATGGTATGATGATGACATCAGTTTGAACTTAAATGGAGATAATTATTCATATAGCTGACCTCAACTTGGTTGGGGCTGAGACATATAGTTGTTGTTGAAGTAAATTTATGTTTGAAATTTGCGCTGCAAGCCTGCAAGTAATATGAAGATATGATGAGGTCACGTTCTACTAATTGCAAATGACTTGGCACTTCTAATAAAATATTCTTGTGCAGGAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAGGTTATGATGTTTACAGCATTTGCATCTCCAATTTTTTATTTTGGTCATATAGTATTAGTGTAGATACATCATGAGTTGCATGTGTGATATATTCCACTTTTTTGGTTGAATTATTATTTATCCAAGATTTCTGGTTAGAACCATCTGCAATAACATATATGAAGATGGAGTTCAAATTTTCTTTTCCTTGTGTCTCGTGACTAGGGGTGATGGAGTGATTTCATTGCAAAGTCCTAGCAGAGAGTCTCTACCCTTGTATTTAATTATGAGATTCAATATTTCATGTTGGAATGTTATTTAAAATCAATCACATGGTAATAATGTATTGTTGTTTCTGCCCCCATAATCATTGGCTTGGATTGTTTTAAACTGGATATTCTCTTTTCAGAAGCACAATATTTTTTTCTTTGGTCGCTAAGTCTATATGACTGATAATCTGTATTTCTAGTGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAAGTAGGTTTGATTCATATCTTGTGTTTTACTTTTCTTTTCGGTGACTTGTGTGCGTTTTGCTCATTTATTTTGTCTATTTTTCTAAAGATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAGGTTAGTGTATTTCTGTTTAAAAAAGAAATTTTGGAAGATGGAACTTTACATCAGAGTCTGAATCCTAGTGCGTTCCTTTTTGTGTAGTGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAGGTAATGTTATGGTTACAAGGTAGTGTTGCTTGTGAATTAGAATATGATTTTTTCAGTTTATATGTACAGGTTTTTGGTTGAGTGTAATATTTGTTTGTGGATGGGTGTTGGTGTGTGTCTGGGGGTGCTGATACATACATCAGTTTCAATTTTTCTTTATTTGTATTTATTTGCTCGTGTAAGTTATCTAATTTCTCCCGTTTTACCTGACAGCTTGATGTATATGAT</genome_strand>
        <mrna_strand>GGTTATGGGAG.......................................................................................................................................GCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAA.......................................................................................ATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAG.......................................................................................TGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAG.....................................................................................................................................................................................................................CTTGATGTATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693954" ref_strand="+" ref_description="SGN-E693954 [LH_Ea02K16](-)">
      <seq>ccagcttttaaaaagactaccaaaaaggcatttgctaaggcgcctgcaaagtcaaataaacggaagaagtcaaaagatgcatttgaatctgaagatgaggaagaggaaaatagtgatgatgaaagtgatgactatgaggaacaattgaatgggcgggccaagttttccggcaggggttgaggaaaggctgctggcaaagctacagctgctaaaaagggcgctggtcgaggaaggggtcggtttccagcagcaaacaaaagctccccccctgaagcgaaagtatcgacaggtaaaaggggaaggccaaggaaatcgtaagagtacagctttcttggtcaaaatgtaaggaactctctatattatggaatgtatttttattttccattggctaattagttgcactttaacaagttattaatttttgtcattaactccattcaacattttgaaatttagcaagtgtaatccatttgcgtaacttgtaacccgtattgacatagatcattgactgaaaagacaggtgtttatccgagcctgtccctagttaagctcgatttttggataggagcggaaacaggggaaaagaaaggaaaaacctattctgcccagtgtactctgatgtctatttttgttaccaatttgtggggcaactgaaacccatttgttttgaaaatctatgctgaaaagggatattgctgtgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="102601" stop="130372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102901" g_stop="103622" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E693954" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102901" e_stop="103622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTTCTAAAAAGACTACCAAAAAGGCATCTGCGAAGGCGCCTGCAAAGTCAAATAAACGGAAGAAGTCAAAAGATGCATCTGAATCTGAAGATGAGGAAGAGGAAAATAGTGATGATGAAAGTGATGACTATGAGGAACAATCGAATGGGCGGGCCAAGTCTTCCGGCAGGGGTCGAGGAAAGGCTGCTGGCAAAGCTACAGCTGCTAAAAAGGGCGCAGGTCGAGGAAGGGGTCGGTCTCCAGCAGCAAACAAAAGCTCCCCACCTGAAGTGAAAGTATCGACAGGTAAAAGGGGAAGGCCGAGGAAATCGTAAGAGTACAGCTTTCCTGGTCAAAATGTAAGGCACTCTCTATATTATGGAATGTATTTTTATTCTCCATTGGCTAATTAGTTGCACTTTAACAAGTAATTAATTTTCGTCATTAACTCCATTCAACATTCTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCTTGTACCTAGTTAAGCTCGTTTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAACCCTATTCTGCCCAGTGTACTCTGATTTCTATTTTTGTTACTAATTTGTGGTGCAACTGAAACACATTTGTTCTGAAAATCTATGCTGATTAGTAATATTGCTGTGTAAATGAAGTATTTATCAGAAT</genome_strand>
        <mrna_strand>CCAGCTTTTAAAAAGACTACCAAAAAGGCATTTGCTAAGGCGCCTGCAAAGTCAAATAAACGGAAGAAGTCAAAAGATGCATTTGAATCTGAAGATGAGGAAGAGGAAAATAGTGATGATGAAAGTGATGACTATGAGGAACAATTGAATGGGCGGGCCAAGTTTTCCGGCAGGGGTTGAGGAAAGGCTGCTGGCAAAGCTACAGCTGCTAAAAAGGGCGCTGGTCGAGGAAGGGGTCGGTTTCCAGCAGCAAACAAAAGCTCCCCCCCTGAAGCGAAAGTATCGACAGGTAAAAGGGGAAGGCCAAGGAAATCGTAAGAGTACAGCTTTCTTGGTCAAAATGTAAGGAACTCTCTATATTATGGAATGTATTTTTATTTTCCATTGGCTAATTAGTTGCACTTTAACAAGTTATTAATTTTTGTCATTAACTCCATTCAACATTTTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCCTGTCCCTAGTTAAGCTCGATTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAAACCTATTCTGCCCAGTGTACTCTGATGTCTATTTTTGTTACCAATTTGTGGGGCAACTGAAACCCATTTGTTTTGAAAATCTATGCTGAAAAGGGATATTGCTGTGTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220923" ref_strand="+" ref_description="SGN-E220923 [cLEL-22-C9](-)">
      <seq>cccacctgaagtgaaagtatcgacaggtaaaaggggaaggccgaggaaatcgtaagagtacagctttcctggtcaaaatgtaaggcactctctatattatggaatgtatttttattctccattggctaattagttgcactttaacaagtaattaattttcgtcattaactccattcaacattctgaaatttagcaagtgtaatccatttgcgtaacttgtaacccgtattgacatagatcattgactgaaaagacaggtgtttatccgagcttgtacctagttaagctcgttttttggataggagcggaaacaggggaaaagaaaggaaaaccctattctgcccaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="102864" stop="130375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103164" g_stop="103508" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103509" i_stop="103783" i_length="275">
            <donor d_prob="0.407" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103784" g_stop="103805" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="367" r_length="22" r_score="0.591"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E220923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103164" e_stop="103508"/>
          <exon e_start="103784" e_stop="103805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCTGAAGTGAAAGTATCGACAGGTAAAAGGGGAAGGCCGAGGAAATCGTAAGAGTACAGCTTTCCTGGTCAAAATGTAAGGCACTCTCTATATTATGGAATGTATTTTTATTCTCCATTGGCTAATTAGTTGCACTTTAACAAGTAATTAATTTTCGTCATTAACTCCATTCAACATTCTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCTTGTACCTAGTTAAGCTCGTTTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAACCCTATTCTGCCCAGTGTACTCTGATTTCTATTTTTGTTACTAATTTGTGGTGCAACTGAAACACATTTGTTCTGAAAATCTATGCTGATTAGTAATATTGCTGTGTAAATGAAGTATTTATCAGAATGTTTTGTTGTAGTTGATCATTTTAATGTTGCGTTCTAGCCTTGTTGATGATCAATGATGAGACTTACACAACGATCATGCTGAGTATTGATTTATCTTCCTATAATATCATAAGCATGTTTGGAGTCTACTTGGATGGACAAAAGATGGTTTGTCTATGAGCTAAAAGAACCAGAAAACAGAA</genome_strand>
        <mrna_strand>CCCACCTGAAGTGAAAGTATCGACAGGTAAAAGGGGAAGGCCGAGGAAATCGTAAGAGTACAGCTTTCCTGGTCAAAATGTAAGGCACTCTCTATATTATGGAATGTATTTTTATTCTCCATTGGCTAATTAGTTGCACTTTAACAAGTAATTAATTTTCGTCATTAACTCCATTCAACATTCTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCTTGTACCTAGTTAAGCTCGTTTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAACCCTATTCTGCCCA...................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541762" ref_strand="+" ref_description="SGN-E541762 [TUS-62-L13]">
      <seq>ctactgggacctgtaaaaaaaagaaaaactgaagccacggaactcaaaatacaaaatttagctagattttaggagagtgtttcaagtccgtcttctttattttttttattttttttttttacttttaatttttttaatttttattatcagctcatgaggtacaatttccaacaaatatagaatatctactacaacacttaacaagattggtcaatcagtgagtgaaagaagaagaagaaaatgggaaaatctacagcttcttcttgcttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcggatgagaagccccgtgtctccacagacgcgaagccccagctctcggtggaagtctcagtggatgaaaagcccttgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="108893" stop="111818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109193" g_stop="109521" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111518" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="719" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E541762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109193" e_stop="109521"/>
          <exon e_start="111130" e_stop="111518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGGGACCTGTAAAAAAAAGAAAAACTGAAGCCACGGAACTCAAAATACAAAATTTAGCTAGATTTTAGGAGAGTGTTTCAAGTCCGTCTTCTTTATTTTTTTTA-TTTTTTTTTTTACTTTTAATTTTTTTAATTTTTATTATCAGCTCATGAGGTACAATTTCCAACAAATATAGAATATCTACTACAACACTTAACAAGATTGGTCAATCAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATC</genome_strand>
        <mrna_strand>CTACTGGGACCTGTAAAAAAAAGAAAAACTGAAGCCACGGAACTCAAAATACAAAATTTAGCTAGATTTTAGGAGAGTGTTTCAAGTCCGTCTTCTTTATTTTTTTTATTTTTTTTTTTTACTTTTAATTTTTTTAATTTTTATTATCAGCTCATGAGGTACAATTTCCAACAAATATAGAATATCTACTACAACACTTAACAAGATTGGTCAATCAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAAGTCTCAGTGGATGAAAAGCCCTTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299862" ref_strand="+" ref_description="SGN-E299862 [cLEW-1-I4]">
      <seq>tactgggacctgtaaaaaaaagaaaaactgaagccacggaactcaaaatacaaaatttagctagattttaggagagtgtttcaagtccgtcttctttattttttttattttttttttttacttttaatttttttaatttttattatcagctcatgaggtacaatttccaacaaatatagaatatctactacaacacttaacaagattggtcaatcagtgagtgaaagaagaagaagaaaatgggaaaatctacagcttcttcttgcttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="108894" stop="111660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109194" g_stop="109521" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111360" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="560" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E299862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109194" e_stop="109521"/>
          <exon e_start="111130" e_stop="111360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGGGACCTGTAAAAAAAAGAAAAACTGAAGCCACGGAACTCAAAATACAAAATTTAGCTAGATTTTAGGAGAGTGTTTCAAGTCCGTCTTCTTTATTTTTTTTA-TTTTTTTTTTTACTTTTAATTTTTTTAATTTTTATTATCAGCTCATGAGGTACAATTTCCAACAAATATAGAATATCTACTACAACACTTAACAAGATTGGTCAATCAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTC</genome_strand>
        <mrna_strand>TACTGGGACCTGTAAAAAAAAGAAAAACTGAAGCCACGGAACTCAAAATACAAAATTTAGCTAGATTTTAGGAGAGTGTTTCAAGTCCGTCTTCTTTATTTTTTTTATTTTTTTTTTTTACTTTTAATTTTTTTAATTTTTATTATCAGCTCATGAGGTACAATTTCCAACAAATATAGAATATCTACTACAACACTTAACAAGATTGGTCAATCAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737988" ref_strand="+" ref_description="SGN-E737988 [LC11DG05]">
      <seq>cgaggagtgaaagaagaagaagaaaatgggaaaatctacagcttcttcttgcttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcagatgagaagccccgtgtctccacagacgcgaagccccagctcttggtggaggtctcagcggatgaaaagcccttgatatccgaagaagagaagctcgaggtctccgaagatgagaagcccaacatctctatagatgagaagcctcctatctcatcagaagagaaatccctggtctcagacttggtggatgcaaaacaatcagagtcagtaataatagctggatttaatgatgctaaagctgatgtcattccggatgaacacgctcttgttattcagactgcagtcagagcatttctggcacgaagagctcaattaaagcaaaagcatataactaaattgcaagcctgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109108" stop="112193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109407" g_stop="109521" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111735" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="721" r_length="606" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111736" i_stop="111840" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111841" g_stop="111893" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="775" r_length="54" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E737988" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109407" e_stop="109521"/>
          <exon e_start="111130" e_stop="111735"/>
          <exon e_start="111841" e_stop="111893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTGGTACCTCAATTTTGTTATATATTCTTTCAATTAATTTGACCATTTTATGGTTAAAGGTTTTGGCAATTATAAAGTTAATTTGTATTTGATTGTTTCTTCTCCTAGGCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTGCAAG-CTGCTGT</genome_strand>
        <mrna_strand>CGAGGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCAGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTTGGTGGAGGTCTCAGCGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTG.........................................................................................................GCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTGCAAGCCTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365253" ref_strand="+" ref_description="SGN-E365253 [cLPT-16-A23]">
      <seq>agaagaagaagaaaatgggaaaatctacagcttcttcttgcttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcacgaaatctaccaggcatcgtgtattaagcaattcagtaatttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagaagcccctagtctctgtggataagaagccccagatctcagcggatgagaagccccgtgtctccacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109118" stop="111763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109418" g_stop="109521" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111463" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="438" r_length="334" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E365253" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109418" e_stop="109521"/>
          <exon e_start="111130" e_stop="111463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAG</genome_strand>
        <mrna_strand>AGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCACGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAATTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGAAGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGATCTCAGCGGATGAGAAGCCCCGTGTCTCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300322" ref_strand="+" ref_description="SGN-E300322 [cLEW-17-M22]">
      <seq>agaaaatgggtaaatctacagcttcttcttgcgttaaagatcgttgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcggatgagaagccccgtgtctccacagacgcgaagccccagctctcggtggaggtctcagtggatgaaaagcccttgatatccgaagaagagaagctcgaggtctccgaagatgagaagcccaacatctctatagatgagaagcctcctatctcatcagaagagaaatccctggtctcagacttggtggatgcaaaacaatcagagtcagtaataatagctggatttaatgatgctaaagctgatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109127" stop="111986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109427" g_stop="109521" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111686" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="653" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E300322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109427" e_stop="109521"/>
          <exon e_start="111130" e_stop="111686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGGAAAATCTACAGCTTCTTCTTGC-TTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCAT</genome_strand>
        <mrna_strand>AGAAAATGGGTAAATCTACAGCTTCTTCTTGCGTTAAAGATCGTTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737184" ref_strand="+" ref_description="SGN-E737184 [LC08DB04]">
      <seq>agaaaatgggaaaatctacagcttcttcttccttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctccagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcagatgacaagccccgtgtctccacagacgcgaagccccagctcttggtggaggtctcagcggatgaaaagcccttgatatccgaagaagagaagctcgaggtctccgaagatgagaagcccaacatctctatagatgagaagcctcctatctcatcagaagagaaatccctggtctcagacttggtggatgcaaaacaatcagagtcagtaataatagctggatttaatgatgctaaagctgatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109127" stop="111985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109427" g_stop="109521" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111685" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="651" r_length="556" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E737184" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109427" e_stop="109521"/>
          <exon e_start="111130" e_stop="111685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCA</genome_strand>
        <mrna_strand>AGAAAATGGGAAAATCTACAGCTTCTTCTTCCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCCAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCAGATGACAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTTGGTGGAGGTCTCAGCGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334837" ref_strand="+" ref_description="SGN-E334837 [cTOE-3-E12]">
      <seq>aaaatgggaaaatctacagcttcttcttgcttaaagatcattgcttgtggcagtgattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaagaaatctaccaggcatcgtgtattaagcaattcagtagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggcagacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcggatgagaagccccgtgtctccacagacgcgaagccccagctctcggtggaggtctcagtggatgaaaagcccttgatatccgaagaagagaagctcgaggtctccgaagatgagaagcccaacatctctatagatgagaagcctcctatctcatcagaagagaaatccctggtctcagacttggtggatgcaaaacaatcagagtcagtaataatagctggatttaatgatgctaaagctgatgtcattccggatgaacacgctcttgttattcagactgcagtcagagcatttctggcacgaagagctcaattaaagcaaaagcatataactaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109129" stop="112182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109429" g_stop="109521" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111735" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="699" r_length="606" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111736" i_stop="111840" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111841" g_stop="111882" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="741" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E334837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109429" e_stop="109521"/>
          <exon e_start="111130" e_stop="111735"/>
          <exon e_start="111841" e_stop="111882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTGGTACCTCAATTTTGTTATATATTCTTTCAATTAATTTGACCATTTTATGGTTAAAGGTTTTGGCAATTATAAAGTTAATTTGTATTTGATTGTTTCTTCTCCTAGGCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTG</genome_strand>
        <mrna_strand>AAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTG.........................................................................................................GCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740849" ref_strand="+" ref_description="SGN-E740849 [LC23AF06]">
      <seq>ccttaaaaaaaaaaaaaaatcggaggggggggccgggtccccttttccccattattggttgtgtttaaagattctgttgaccgtgatgaacttgaagctcatcctgagagtaaaagctcaagtgataaacgtggatggagtttccgcaataaatctaccaggcatcgtgtattaagcaattcattagtttcagaaacaccatctgggaacaaggactggccagaagctgctaatgccaatctgcaaacacaatctaactctaccattccagagaaggcatctgtcgtccaatgggcagatgagaaaccccagttttcaacggtcgagaagtcccaggtctcggctgacgagaagccccagatcctggaggatgagacgcccctagtctctgtggataagaagccccaggtctcagcagatgagaagccccgtgtctccacagacgcgaagccccagctcttggtggaggtctcagcggatgaaaagcccttgatatccgaagaagagaagctcgaggtctccgaagatgagaagcccatcatctctatagatgagaagcctcctatctcatcagaagagaaatccctggtctcagacttggtggatgcaaaacaatcagagtcagtaataatagctggatttaatgatgctaaagctgatgtcattccggatgaacacgctcttgttattcagactgcagtcagagcatttctggcacgaagagctcaattaaagcaaaagcctttaacttaattgcaagctgctgtacgtggacatttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="109183" stop="112209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109482" g_stop="109521" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="108" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111130" g_stop="111735" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="714" r_length="606" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111736" i_stop="111840" i_length="105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111841" g_stop="111909" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="783" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E740849" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109482" e_stop="109521"/>
          <exon e_start="111130" e_stop="111735"/>
          <exon e_start="111841" e_stop="111909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAGGTGAAAAATCTACACCCATTTTTATCAGATCAAATTTTCATGTAGTATTTTATTTTTCTTTTTGCATTTCAAAGATGGTAATGTGTGATAAAAATTGAATCTTTTTTGTGAGATAATGGTTTTGAAGTGAATCTTGGATCAACCCATCAAAGTATGGAGTCTGATCTTTTGTGGGGGGGTTTTGTTTCTACTAATTTGATAAGTTTTTGAGATGATGGAGTTGAGCTGATTTGGTTCTTGAATAAAGGAGTTCTTTTTTTTTTTTTTTTTTGTGGAAGGTATGTAGGGAACTTTTGAACTTTGTGACTGGATCTCTATTAGGGGATGTAAGATTGTGGAATGGTTTGGTTGAGAACTTGTTAGATGTATTTTACGTCAATGTTAAATGAGAGTGTTTAAGATATTAAATAGTTCAATTTTTCATGTTTGTTAGTTAAGTAATTGCCAATTCCAAGGAAGGCTTGATTTTGGTCAGTTGATATAAAACCAGTTACATTTTACACCATGAAGATGTGAACTGTATGGATTCAATGTGTTTTAAAATGGAAATGAAATGGATCACTATTGTAAGTGGCTTTCTTTTGGTTAGAGGGGAACGGGAAAATAGTGATGCAATTTACCAAGAAACGAAAATTGATTCGATTTGTGACCGTCAATTAGGGATGTGTTGTCATAAGGTAAATGCTAGTGAAGCCTTTCAATTTCTGTACCATTCAATTAATCAACGTCGCCTCATCTTAAAATACCATACTTGGCTTTCAGTGTTTGACAAAAATGTAGTTTCATTAATTGAGCTGTACTTGTTCTTAGCAATGTCTTCTCAATTTACAGTGTAAGTTTAGATAACATCTAGTTCTCTTTTCAAGTTGAGTTTGCAATACTTCAACATCAAGTTAATTTTTTATGATGACATCGACATGATACTCTGATGCAAGCACTACTTGTTTCCAAATGGTGTATGCCAAATATATGTTGTCTTCCTTCTTACATCATTATGGCCTTGCTTCTGGTGTAGTTTGCAATATAAGTTGAGCTGATAATTCCAGCTATGAGACTTCACATTACCTACTACCTGATTGGTGGAATGCATAAGTATGGAAAAACAAATGAAGTACCAGTCCGTTGACATACATGTAATGAAACATGATTAAGAAGACAAGCTTGTGTATGATTTCATTTCTTTATCTATGGTCTCTTCATGGGAGGTTAAGGGGTTGGCAGAAAAGAAATCATCATTTGTATCAAAAGTGAATAGATGTGATAAAGAAGATCTTGTTGTCAATGGATTCAGTTCCTACTATATGCATCATGACTCGTCTATGTATGCTTGTTACATGATTCCAGAAATGTTCAATCTACAATCTGCACACCGTCCTCCCTTGTCCGCCGTGGTCCATAGTATGGATCTAATAAAGGTTCCCTCTTTGTACTTCTACTTCATGGGTAAAAAGAGAAATGGATGTACCTGTGGGTGGATGTTAAACTCAGCTACTAGCAATACAACTTTATATCAGATTGGATGTTCAGTTAAATATCTTTTCGGAATTTATCTTTTGCCTTTTCCTCCTCTATTCTTTGTTGAATGAATTATTTGATACATTTTCCTAGAGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTGGTACCTCAATTTTGTTATATATTCTTTCAATTAATTTGACCATTTTATGGTTAAAGGTTTTGGCAATTATAAAGTTAATTTGTATTTGATTGTTTCTTCTCCTAGGCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTGCAAGCTGCTGTACGTGGACACTTAGTT</genome_strand>
        <mrna_strand>AGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAATAAATCTACCAGGCATCGTGTATTAAGCAATTCATTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCTGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCAGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTTGGTGGAGGTCTCAGCGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCATCATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTG.........................................................................................................GCACGAAGAGCTCAATTAAAGCAAAAGCCTTTAACTTAATTGCAAGCTGCTGTACGTGGACATTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367020" ref_strand="+" ref_description="SGN-E367020 [cLPT-6-P5]">
      <seq>acactaatcgcattgcagaaggatctagtatcaaggagaagctaaaaggaaaagagaacgcaggaacaaaatcagagttcacatacatttctatttcaaagctactgagcaatagcttcgctcaacagctccttgaatcaactccaaggaccaaaagtataaatattaagtgtgacccttccaaatctgattctgcctggaaatggttagagagatggatgtctgttgcatcaccaggaaatcaaccgtcaccacaatcagaattatctgccgagcagcaggagaatgaacctatcgagcaccccagtaaccttattgaaaatgaagttcagcttgattccgagtcaatggacttcagacagggcgaggaggcatccttgtctgcagtgccatctgaaagtgatgataatttgatcacttatgatgcagacagcttagattttcaagccaacatacccttttcgcctcctcagcctcagaatgttgatgaaaaaacttcaagagatgacactttctgttctattcctactcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="111683" stop="113093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111983" g_stop="112029" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112030" i_stop="112198" i_length="169">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112199" g_stop="112279" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="128" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112280" i_stop="112385" i_length="106">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.413" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112386" g_stop="112793" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="536" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E367020" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111983" e_stop="112029"/>
          <exon e_start="112199" e_stop="112279"/>
          <exon e_start="112386" e_stop="112793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAATCGCATTGCAGAAGAATCTAGTATCAAGGAGAAGCTAAAAGTAAGTATTGGAAAGATCAAGAGTATGAAACTATATTGGCAATATTTCTGTCTCAAGCATAAATTGGAATGATTCTGGTCTCCTCGCTTTGGAATCCTAGATCAGACACTAACACACTCTTAGCTATTTCAACTGATGGAGTCACATTTCTTATGTTTCTTTATTTCAGGGAAAAGAGAACTCAGGAACAAAATCAGAGTTCACATACATTTCAATTTCAAAGCTACTGAGCAATAGCTTCGCTCAACAGGTATATATTAGTCATTTTCCGCTATATGATCTGAAATATGCGATATTTTTTTAAATATGTATCATTTCCCATCCAAACTGATTTGTTATTTCTCCTTTGGTACAAGCTCCTTGAATCAACTCCAAGGACCAAAAGTATAAATATTAAGTGTGACCCTTCCAAATCTGATTCTGCCTGGAAATGGTTAGAGAGATGGATGTCTGTTGCATCACCAGGAAATCAACCGTCACCACAATCAGAATTATCTGCCGATCAGCAGGAGAATGAACCTATCGAGCACCCCAGTAACCTTATTGAAAATGAAGTTCAGCTTGATTCCGAGTCAATGGACTTCAGACAGGGCGAGGAGGCATCCTTGTCTGCAGTGCCATCTGAAAGTGATGATAATTTGATCACTTATGATGCAGACAGCTTAGATTTTCAAGCCAACATACCCTTTTCGCCTCCTCAGCCTCAGAATGTTGATGAAAAAACTTCAAGAGATGACACTTTCTGTTCTATTCCTACTCAACAT</genome_strand>
        <mrna_strand>ACACTAATCGCATTGCAGAAGGATCTAGTATCAAGGAGAAGCTAAAA.........................................................................................................................................................................GGAAAAGAGAACGCAGGAACAAAATCAGAGTTCACATACATTTCTATTTCAAAGCTACTGAGCAATAGCTTCGCTCAACAG..........................................................................................................CTCCTTGAATCAACTCCAAGGACCAAAAGTATAAATATTAAGTGTGACCCTTCCAAATCTGATTCTGCCTGGAAATGGTTAGAGAGATGGATGTCTGTTGCATCACCAGGAAATCAACCGTCACCACAATCAGAATTATCTGCCGAGCAGCAGGAGAATGAACCTATCGAGCACCCCAGTAACCTTATTGAAAATGAAGTTCAGCTTGATTCCGAGTCAATGGACTTCAGACAGGGCGAGGAGGCATCCTTGTCTGCAGTGCCATCTGAAAGTGATGATAATTTGATCACTTATGATGCAGACAGCTTAGATTTTCAAGCCAACATACCCTTTTCGCCTCCTCAGCCTCAGAATGTTGATGAAAAAACTTCAAGAGATGACACTTTCTGTTCTATTCCTACTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317369" ref_strand="+" ref_description="SGN-E317369 [cTOA-28-E4]">
      <seq>gaagttgagagagaggatacacattccctggaactttcagagactgagagcaaaaagattttacatggatcaaggaaggcaagtaatcctgcatttattgctgctcagacaaagtttgaggaactcactttggcagctaaatcaaccaaagattctagtttgcccaatcataaaacagaagatgaatctagtgaagatacgttttcaactatcactaatcattcatttggggcaagggatgctgctccatcagaaaattctgttcctcacagtacaagagctcaagttggtggttcagaatgtggcacggagctttctatttcttctaccctggattcaccagataggtctgaagtcggaggtcatgtatttgagcaggaacttccttccaatggtggcactgaccatcataagagcaatggataccctcacattgaagatgatagtacaaatgacttatcacactccgactatgttcaggcagggagagaggatcctactgatgatgctaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="112548" stop="113663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112848" g_stop="113363" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E317369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112848" e_stop="113363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGAGAGAGAGGATACACATTCCCTGGAACTTTCAGAGACTGAGAGCAAAAAGATTTTACATGGATCAAGGAAGGCAAGTAATCCTGCATTTATTGCTGCTCAGACAAAGTTTGAGGAACTCACTTTGGCAGCTAAATCAACCAAAGATTCTAGTTTGCCCAATCATAAAACAGAAGATGAATCTAGTGAAGATACGTTTTCAACTATCACTAATCATTCATTTGGGGCAAGGGATGCTGCTCCATCAGAAAATTCTGTTCCTCACAGTACAAGAGCTCAAGTTGGTGGTTCAGAATGTGGCACGGAGCTTTCTATTTCTTCTACCCTGGATTCACCAGATAGGTCTGAAGTCGGAGGTCATGTATTTGAGCAGGAACTTCCTTCCAATGGTGGCACTGACCATCATAAGAGCAATGGATACCCTCACATTGAAGATGATAGTACAAATGACTTATCACACTCCGACTATGTTCAGGCAGGGAGAGAGGATCCTACTGATGATGCTAAGCAT</genome_strand>
        <mrna_strand>GAAGTTGAGAGAGAGGATACACATTCCCTGGAACTTTCAGAGACTGAGAGCAAAAAGATTTTACATGGATCAAGGAAGGCAAGTAATCCTGCATTTATTGCTGCTCAGACAAAGTTTGAGGAACTCACTTTGGCAGCTAAATCAACCAAAGATTCTAGTTTGCCCAATCATAAAACAGAAGATGAATCTAGTGAAGATACGTTTTCAACTATCACTAATCATTCATTTGGGGCAAGGGATGCTGCTCCATCAGAAAATTCTGTTCCTCACAGTACAAGAGCTCAAGTTGGTGGTTCAGAATGTGGCACGGAGCTTTCTATTTCTTCTACCCTGGATTCACCAGATAGGTCTGAAGTCGGAGGTCATGTATTTGAGCAGGAACTTCCTTCCAATGGTGGCACTGACCATCATAAGAGCAATGGATACCCTCACATTGAAGATGATAGTACAAATGACTTATCACACTCCGACTATGTTCAGGCAGGGAGAGAGGATCCTACTGATGATGCTAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551496" ref_strand="+" ref_description="SGN-E551496 [TUS-55-N22]">
      <seq>ttcaaatagagcaagaagctaggacggatcggctagaccagtcatcaccagacgcatctcccaggagccatataactgtccctgaatcccaagggacaccttctagtcaagtgtccgtgaatcctaagaagataagaagtgaaaaaagtggatcgattcccaagcgccgctctgcacctgctggcaaaaagtctccttcaaagttaaaccatgctccaggtacaactagttcggaacaattatctaaggatcataaaaatgagaagcgacgaaactcgtttggttcaacaaaagctggactagctgatcaggaggctagagataacagtactagcagttctctcccaagttacatgcaagcaacagaatctgcaagagccaaagctatcccaaatagctccccaagatctagtccagatgtccacaataaagatgaatacatcaaaaagagacattcactccctggttcaaatggtaggcaaggttcacctcgtatcccgcggtctctgtctaatgcacagcagggtgcaaagggaaatggaactcaatctccacaagagaggaaatggcagagatgagtagagctctgtggcttattggcaattcctttgggtgcttgacatctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="113131" stop="115050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113431" g_stop="113988" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="114679" i_length="691">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114680" g_stop="114750" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="629" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E551496" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113431" e_stop="113988"/>
          <exon e_start="114680" e_stop="114750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACAAGTCATCACCAGACGCATCTCCAAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCAGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATCTCCACAAGGTATTTTCTAAACCTTCAGATGCCTTGTATACAATCTATTACTATTGATTACTGCAATGAGAGAACTACTTGAGTTTCTGAGTGGAGTTATGACCCGGTACTCCAACTCATTTCCTGCCTAGTACGTCCTTTCCCCCAATGATAAAATCGAGATAGGATCAAGTATGTTATTCACAGTCTAGTCACCTGAAACTATTAAAACTGTGCTGATATAGTATCACAATGATTTAGATGAGCAAAAAACCTTAGTGTTTTAAGCACTAACAAATGGTATCAACTCCCTTTTTGAATCTGGCATGTACGTCAATTGCAGCACTGTTTATTCACACGTCGATCACCTGACACTTATTCTTCCCCTTGCATTTTGTTTCTTTTAACTACTATTACTATGTTATATTTAGACTGCTTAACTACACTACTTCAATCGACACCAAAATTGTTGATTGTGAACCATGCATGTGTGTCCCCTAGAGATCCGCTTATCCTTGAGCTTTTTCATGCAAATTTTGGCAGTTTGCACTGGCATTAAGCTTCAAAAGGATGAAATTCACTGACAATTTATGATGACAATTGTGGGGCACCATGGTTCTTTAACCGTTGGGCTAACTTTTTTCTTCTTCTTCTTCTTCCAATTCTGAGCTTTGAATTCTCATATGTAATATTTTGTTGGTGTCTGATGTGTGTTTTTCAGAGAGGAAATGGCAGAGATGAGTAGAGCTCTGTGGCTTATTGGCAATTCCTTTGGGTGCTTGACATCTGTTC</genome_strand>
        <mrna_strand>TTCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACCAGTCATCACCAGACGCATCTCCCAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCCGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATCTCCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAATGGCAGAGATGAGTAGAGCTCTGTGGCTTATTGGCAATTCCTTTGGGTGCTTGACATCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689049" ref_strand="+" ref_description="SGN-E689049 [t3_tus_55_N22]">
      <seq>ttcaaatagagcaagaagctaggacggatcggctagaccagtcatcaccagacgcatctcccaggagccatataactgtccctgaatcccaagggacaccttctagtcaagtgtccgtgaatcctaagaagataagaagtgaaaaaagtggatcgattcccaagcgccgctctgcacctgctggcaaaaagtctccttcaaagttaaaccatgctccaggtacaactagttcggaacaattatctaaggatcataaaaatgagaagcgacgaaactcgtttggttcaacaaaagctggactagctgatcaggaggctagagataacagtactagcagttctctcccaagttacatgcaagcaacagaatctgcaagagccaaagctatcccaaatagctccccaagatctagtccagatgtccacaataaagatgaatacatcaaaaagagacattcactccctggttcaaatggtaggcaaggttcacctcgtatcccgcggtctctgtctaatgcacagcagggtgcaaagggaaatggaactcaatctccacaagagaggaaatggcagagatgagtagagctctgtggcttattggcaattcctttgggtgcttgacatctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="113131" stop="115050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113431" g_stop="113988" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="114679" i_length="691">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114680" g_stop="114750" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="629" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E689049" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113431" e_stop="113988"/>
          <exon e_start="114680" e_stop="114750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACAAGTCATCACCAGACGCATCTCCAAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCAGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATCTCCACAAGGTATTTTCTAAACCTTCAGATGCCTTGTATACAATCTATTACTATTGATTACTGCAATGAGAGAACTACTTGAGTTTCTGAGTGGAGTTATGACCCGGTACTCCAACTCATTTCCTGCCTAGTACGTCCTTTCCCCCAATGATAAAATCGAGATAGGATCAAGTATGTTATTCACAGTCTAGTCACCTGAAACTATTAAAACTGTGCTGATATAGTATCACAATGATTTAGATGAGCAAAAAACCTTAGTGTTTTAAGCACTAACAAATGGTATCAACTCCCTTTTTGAATCTGGCATGTACGTCAATTGCAGCACTGTTTATTCACACGTCGATCACCTGACACTTATTCTTCCCCTTGCATTTTGTTTCTTTTAACTACTATTACTATGTTATATTTAGACTGCTTAACTACACTACTTCAATCGACACCAAAATTGTTGATTGTGAACCATGCATGTGTGTCCCCTAGAGATCCGCTTATCCTTGAGCTTTTTCATGCAAATTTTGGCAGTTTGCACTGGCATTAAGCTTCAAAAGGATGAAATTCACTGACAATTTATGATGACAATTGTGGGGCACCATGGTTCTTTAACCGTTGGGCTAACTTTTTTCTTCTTCTTCTTCTTCCAATTCTGAGCTTTGAATTCTCATATGTAATATTTTGTTGGTGTCTGATGTGTGTTTTTCAGAGAGGAAATGGCAGAGATGAGTAGAGCTCTGTGGCTTATTGGCAATTCCTTTGGGTGCTTGACATCTGTTC</genome_strand>
        <mrna_strand>TTCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACCAGTCATCACCAGACGCATCTCCCAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCCGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATCTCCACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAATGGCAGAGATGAGTAGAGCTCTGTGGCTTATTGGCAATTCCTTTGGGTGCTTGACATCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264215" ref_strand="+" ref_description="SGN-E264215 [cLEG-70-K11]">
      <seq>tcaaatagagcaagaagctaggacggatcggctagacaagtcatcaccagacgcatctccaaggagccatataactgtccctgaatcccaagggacaccttctagtcaagtgtccgtgaatcctaagaagataagaagtgaaaaaagtggatcgattcccaagcgccgctctgcacctgctggcaaaaagtctccttcaaagttaaaccatgctccaggtacaactagttcggaacaattatctaaggatcataaaaatgagaagcgacgaaactcgtttggttcaacaaaagctggactagctgatcaggaggctagagataacagtactagcagttctctcccaagttacatgcaagcaacagaatctgcaagagccaaagctatcccaaatagctccccaagatctagtccagatgtccacaataaagatgaatacatcaaaaagagacattcactccctggttcaaatggtaggcaaggttcacctcgtatccagcggtctctgtctaatgcacagcagggtggcaagggaaatggaactcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="113132" stop="114280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113432" g_stop="113980" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E264215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113432" e_stop="113980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACAAGTCATCACCAGACGCATCTCCAAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCAGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATC</genome_strand>
        <mrna_strand>TCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACAAGTCATCACCAGACGCATCTCCAAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCAGCGGTCTCTGTCTAATGCACAGCAGGGTGGCAAGGGAAATGGAACTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733564" ref_strand="+" ref_description="SGN-E733564 [LB10BD10]">
      <seq>cataagagaaaatgttgaaattcttgtcaaaagtgaaaatcgaattcaatgccttagatccacgaatagcttcatgtatggagtttttggctcaatgtaatgctcctaaagccaaagaatcaaacccaagttgccaaattcaggtcaagcgccgcactgatgaccatccaccgcaaatctctgtcactttcgtcaatggagtcgagcagacctatgatgctacttctacacccgcacagaacatccgtactatgattcttgaaaagggtcagtaccttgagactgaacagatgtttcgtgaagctggtgagaaatggcctgttattattcctgatgaagagcttaaacaaccatttcttggaataaagccaaagaaagcagaagagaagaagcaatagtcgaagctactcacacctagcttctcatcggggcattttttcagcgttagatcagctatatgacattccagagagatgagtcttcaactaggggcaaagctagttttttgtggcatttatgttaacaagaacattatatttgtactagatgatgaatttgctatccttttgtattgtgagactttgaaatgtcttcccaatcctcatttctccaatcctcgcaaaagaataaaattcccttccaaaacgtttgatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="115388" stop="118852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115688" g_stop="116055" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118264" g_stop="118561" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="666" r_length="298" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E733564" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115688" e_stop="116055"/>
          <exon e_start="118264" e_stop="118561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAATTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAGGTGATAGCTTTTTCCCTTTTCCATTGATTGTATGTGGGTTTTTGTTGTGATTTGGTTGAGGCATATTGTCGAACAGGTTGAGTGTACCTACTTATGTTTTTTCTTTTAGTTTGATTTGTGTCCCCGGATTGGGGTTGAGAATGTTAGTGCAGTAGCGGAGTCGGGATTTTCAATAAGGTGATTCAAAATATATCAAAGTAAACACACAAAGAAACCAAATGAATCAAAAATATATAATTTTGGCCTTGTGTATGTATGTAGTTTAATTTTCAAGTGCTTGCACCCCTAACTCTGCCCTCAAGAGGGGGAGAGAAGATTATCATCTTTCTATAATTTTCTGAAATTTGTAGCTCTTTGTATAGATATGCTTCTCCAAGGATGATATAGTTTGTTTGTGATCCTCTACAACTGGACTGTCTAAATTGGATGATGAAATGAGAACTCTCTTGTTATGCTGGAGGTGTAACACATTCATGATTATTGTTACTATATTGTAGCTCGTCCTGTATCCGGGGCACCCTTATTTGCTATTTTGTATATCCCGTCCTGATTGAGCTCTTATCTGATGATCTATTTTCAAAGTCTTGGAACTTTTGTTTGCTAATTTTTAACGAATCCGTGTTTCTGGGTTTGTTAGCATCTGTACTGCCTATTGTTATCAACTAAAACATGAAAACTAATGAAAACTCCTTCAATTCGCATGAACTTGAGTAGAACAGTAAGATGCTCTCTTGTAGTAGTTAGTGGCTATCAATTTACCTAATTGTATGCATATGATTATGTTTTAAGAACCCTCACGTAATAATTTGTTGAGAAAGAATAACATGTTAATATTTGTTTGGTGAATATTATAACAGGTTAACATTCTTGAAATACTTTCTCTCCTTGATTTTAGAAGCTAAATGTTGCATTTACCAGTTCTTCTATATGCCAATGTGTTGCTTTGTGTTTGTGTTTCTTAAAAATGATACACGAGACAATTCTTAGATAGCTGAGAGTATGTTTATCATGCGGAGAGTAGCCCACTATCATAAAGAAGGGATCTTTATATCATGAAAGGAGTTGCATTAAGGTTTTTGCCTTTCTAGTTGTCAATATGTATCATTTAGGTTTTCATAAGACATCAGTTTGATGGATCTAAAATTTCATTAGTCAGTTATCCCAAAAAGATCAGTGGAATCTAGACGATGTACAGAGTTGTGATTAAAGGTGCTGCGATAAAGCAGTTTTTGTCTCACTTATTACTTTCTACAGATAATGTAGTCGTTTTGAGGAGCTGTGTGCCTTGATATCAGACCCTTGGAAAGACTATGTAAGATTAATTGTATAAGAGACTTTGAGGAACTTTCTATTTTTAACCGGACCATCGATAAGAGCAAGAATATATTTCTTTGTAGTTGATAGTTGATACTGATTTGGTTGCCACTGAAGAGTCACTCGTGTTGGTATGCTTCAAGATTAATTGCTAGTTATTAGTCTAGGAAGGTAATGTAGTCTAGGAGTACTAATAAAATGAACTTCTTTATTATGTACATAAAGTGATTGATTAGGGCTAAGTTACCTGAGGTCTCTCCACCCCCCCCCCCTCCCCAAAAGGGAAAGTTACTGTGTAGAAGACAATAGTTGTGAAGGACAAGGCGATCGGAAGTGTTAGAGATCTGTGCTTTTAGATGTCGAACAAATTAAGCTCAGACAGCCCTATCAATTGCTTTTAGGTCTTCAACATGCCCTACAAGCTAGCCTAAAGTGTGTTTAATTTCCTATATCTCTCTTCCTGTTCCCTTCTCGTTTTCACCTTTTCCCCCCTGTTTTGCTTGTCCCGGAAAATCTATTCTTCTTCGATTTGAATATGAAAGAGATCTTGACATTTTGGAATCATATGCATATGCATTTCTTTCTCCCAGAGATATAAGTCATGAATCTCTCTTATCCTTGCTCCTTTTCAGAAAGAAGTTACTTTTCCTAGTAAATTATTTCTAGTACGTAGAATGTTCTACTGCCCAAGAACTTTGAAATTATTCGTTGTTGACCACAATCTTGTTCTGCATTGGTGCTGCTTAGGTTTGAGAACTTGTTGAAACTGTTAGCTAGTTTATAGATAGATCACTAGCTACTTGTACCAACAAGCGTGTCGTCTATGTAAAACTTCATTATTCCTAATTATTCATTTGGTTAGTCTTCTAACTGTATTTCTCTACAAATTTTCAGCCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTTGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCATTTTGGAAT</genome_strand>
        <mrna_strand>CATAAGAGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAGTTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTCGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733643" ref_strand="+" ref_description="SGN-E733643 [LB10CC05]">
      <seq>aatagagaaaatgttgaaattcttgtcaaaagtgaaaatcgaattcaatgccttagatccacgaatagcttcatgtatggagtttttggctcaatgtaatgctcctaaagccaaagaatcaaacccaagttgccaaattcaggtcaagcgccgcactgatgaccatccaccgcaaatctctgtcactttcgtcaatggagtcgagcagacctatgatgctacttctacacccgcacagaacatccgtactatgattcttgaaaagggtcagtaccttgagactgaacagatgtttcgtgaagctggtgagaaatggcctgttattattcctgatgaagagcttaaacaaccatttcttggaataaagccaaagaaagcagaagagaagaagcaatagtcgaagctactcacacctagcttctcatcggggcattttttcagcgttagatcagctatatgacattccagagagatgagtcttcaactaggggcaaagctagttttttgtggcatttatgttaacaagaacattatatttgtactagatgatgaatttgctatccttttgtattgtgagactttgaaatgtcttcccaatcctcatttctccaatcctcgcaaaagaataaaattcccttccaaaacgtttgatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="115390" stop="118852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115689" g_stop="116055" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118264" g_stop="118561" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="665" r_length="298" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E733643" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115689" e_stop="116055"/>
          <exon e_start="118264" e_stop="118561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAATTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAGGTGATAGCTTTTTCCCTTTTCCATTGATTGTATGTGGGTTTTTGTTGTGATTTGGTTGAGGCATATTGTCGAACAGGTTGAGTGTACCTACTTATGTTTTTTCTTTTAGTTTGATTTGTGTCCCCGGATTGGGGTTGAGAATGTTAGTGCAGTAGCGGAGTCGGGATTTTCAATAAGGTGATTCAAAATATATCAAAGTAAACACACAAAGAAACCAAATGAATCAAAAATATATAATTTTGGCCTTGTGTATGTATGTAGTTTAATTTTCAAGTGCTTGCACCCCTAACTCTGCCCTCAAGAGGGGGAGAGAAGATTATCATCTTTCTATAATTTTCTGAAATTTGTAGCTCTTTGTATAGATATGCTTCTCCAAGGATGATATAGTTTGTTTGTGATCCTCTACAACTGGACTGTCTAAATTGGATGATGAAATGAGAACTCTCTTGTTATGCTGGAGGTGTAACACATTCATGATTATTGTTACTATATTGTAGCTCGTCCTGTATCCGGGGCACCCTTATTTGCTATTTTGTATATCCCGTCCTGATTGAGCTCTTATCTGATGATCTATTTTCAAAGTCTTGGAACTTTTGTTTGCTAATTTTTAACGAATCCGTGTTTCTGGGTTTGTTAGCATCTGTACTGCCTATTGTTATCAACTAAAACATGAAAACTAATGAAAACTCCTTCAATTCGCATGAACTTGAGTAGAACAGTAAGATGCTCTCTTGTAGTAGTTAGTGGCTATCAATTTACCTAATTGTATGCATATGATTATGTTTTAAGAACCCTCACGTAATAATTTGTTGAGAAAGAATAACATGTTAATATTTGTTTGGTGAATATTATAACAGGTTAACATTCTTGAAATACTTTCTCTCCTTGATTTTAGAAGCTAAATGTTGCATTTACCAGTTCTTCTATATGCCAATGTGTTGCTTTGTGTTTGTGTTTCTTAAAAATGATACACGAGACAATTCTTAGATAGCTGAGAGTATGTTTATCATGCGGAGAGTAGCCCACTATCATAAAGAAGGGATCTTTATATCATGAAAGGAGTTGCATTAAGGTTTTTGCCTTTCTAGTTGTCAATATGTATCATTTAGGTTTTCATAAGACATCAGTTTGATGGATCTAAAATTTCATTAGTCAGTTATCCCAAAAAGATCAGTGGAATCTAGACGATGTACAGAGTTGTGATTAAAGGTGCTGCGATAAAGCAGTTTTTGTCTCACTTATTACTTTCTACAGATAATGTAGTCGTTTTGAGGAGCTGTGTGCCTTGATATCAGACCCTTGGAAAGACTATGTAAGATTAATTGTATAAGAGACTTTGAGGAACTTTCTATTTTTAACCGGACCATCGATAAGAGCAAGAATATATTTCTTTGTAGTTGATAGTTGATACTGATTTGGTTGCCACTGAAGAGTCACTCGTGTTGGTATGCTTCAAGATTAATTGCTAGTTATTAGTCTAGGAAGGTAATGTAGTCTAGGAGTACTAATAAAATGAACTTCTTTATTATGTACATAAAGTGATTGATTAGGGCTAAGTTACCTGAGGTCTCTCCACCCCCCCCCCCTCCCCAAAAGGGAAAGTTACTGTGTAGAAGACAATAGTTGTGAAGGACAAGGCGATCGGAAGTGTTAGAGATCTGTGCTTTTAGATGTCGAACAAATTAAGCTCAGACAGCCCTATCAATTGCTTTTAGGTCTTCAACATGCCCTACAAGCTAGCCTAAAGTGTGTTTAATTTCCTATATCTCTCTTCCTGTTCCCTTCTCGTTTTCACCTTTTCCCCCCTGTTTTGCTTGTCCCGGAAAATCTATTCTTCTTCGATTTGAATATGAAAGAGATCTTGACATTTTGGAATCATATGCATATGCATTTCTTTCTCCCAGAGATATAAGTCATGAATCTCTCTTATCCTTGCTCCTTTTCAGAAAGAAGTTACTTTTCCTAGTAAATTATTTCTAGTACGTAGAATGTTCTACTGCCCAAGAACTTTGAAATTATTCGTTGTTGACCACAATCTTGTTCTGCATTGGTGCTGCTTAGGTTTGAGAACTTGTTGAAACTGTTAGCTAGTTTATAGATAGATCACTAGCTACTTGTACCAACAAGCGTGTCGTCTATGTAAAACTTCATTATTCCTAATTATTCATTTGGTTAGTCTTCTAACTGTATTTCTCTACAAATTTTCAGCCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTTGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCATTTTGGAAT</genome_strand>
        <mrna_strand>AATAGAGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAGTTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTCGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690611" ref_strand="+" ref_description="SGN-E690611 [LH_Ea03P09]">
      <seq>tcatccgtactatgattcttgaaaagggtcagtaccttgagactgaacagatgtttcgtgaagctggtgaaaaatggcctgttattattcctgatgaagagcttaaacaaccatttcttggaataaagccaaagaaagcagaagagaagaagcaataatcaaagctactcacacctaacttctcgtcgtggcattttctcagcgttagatcagctgtatgacattccagagagatgaatcttcaaattggggcaaagctagtttttgttgcatttatgttaacaagaatattagttttgtactagatcatgaatttgctatcctttgtattgtgagactttgaaatgccttcccaatcctcatttctcctaccctttgcaaaagaataataatcccttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="115629" stop="118840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115928" g_stop="116055" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118264" g_stop="118541" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="405" r_length="277" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E690611" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115928" e_stop="116055"/>
          <exon e_start="118264" e_stop="118541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAGGTGATAGCTTTTTCCCTTTTCCATTGATTGTATGTGGGTTTTTGTTGTGATTTGGTTGAGGCATATTGTCGAACAGGTTGAGTGTACCTACTTATGTTTTTTCTTTTAGTTTGATTTGTGTCCCCGGATTGGGGTTGAGAATGTTAGTGCAGTAGCGGAGTCGGGATTTTCAATAAGGTGATTCAAAATATATCAAAGTAAACACACAAAGAAACCAAATGAATCAAAAATATATAATTTTGGCCTTGTGTATGTATGTAGTTTAATTTTCAAGTGCTTGCACCCCTAACTCTGCCCTCAAGAGGGGGAGAGAAGATTATCATCTTTCTATAATTTTCTGAAATTTGTAGCTCTTTGTATAGATATGCTTCTCCAAGGATGATATAGTTTGTTTGTGATCCTCTACAACTGGACTGTCTAAATTGGATGATGAAATGAGAACTCTCTTGTTATGCTGGAGGTGTAACACATTCATGATTATTGTTACTATATTGTAGCTCGTCCTGTATCCGGGGCACCCTTATTTGCTATTTTGTATATCCCGTCCTGATTGAGCTCTTATCTGATGATCTATTTTCAAAGTCTTGGAACTTTTGTTTGCTAATTTTTAACGAATCCGTGTTTCTGGGTTTGTTAGCATCTGTACTGCCTATTGTTATCAACTAAAACATGAAAACTAATGAAAACTCCTTCAATTCGCATGAACTTGAGTAGAACAGTAAGATGCTCTCTTGTAGTAGTTAGTGGCTATCAATTTACCTAATTGTATGCATATGATTATGTTTTAAGAACCCTCACGTAATAATTTGTTGAGAAAGAATAACATGTTAATATTTGTTTGGTGAATATTATAACAGGTTAACATTCTTGAAATACTTTCTCTCCTTGATTTTAGAAGCTAAATGTTGCATTTACCAGTTCTTCTATATGCCAATGTGTTGCTTTGTGTTTGTGTTTCTTAAAAATGATACACGAGACAATTCTTAGATAGCTGAGAGTATGTTTATCATGCGGAGAGTAGCCCACTATCATAAAGAAGGGATCTTTATATCATGAAAGGAGTTGCATTAAGGTTTTTGCCTTTCTAGTTGTCAATATGTATCATTTAGGTTTTCATAAGACATCAGTTTGATGGATCTAAAATTTCATTAGTCAGTTATCCCAAAAAGATCAGTGGAATCTAGACGATGTACAGAGTTGTGATTAAAGGTGCTGCGATAAAGCAGTTTTTGTCTCACTTATTACTTTCTACAGATAATGTAGTCGTTTTGAGGAGCTGTGTGCCTTGATATCAGACCCTTGGAAAGACTATGTAAGATTAATTGTATAAGAGACTTTGAGGAACTTTCTATTTTTAACCGGACCATCGATAAGAGCAAGAATATATTTCTTTGTAGTTGATAGTTGATACTGATTTGGTTGCCACTGAAGAGTCACTCGTGTTGGTATGCTTCAAGATTAATTGCTAGTTATTAGTCTAGGAAGGTAATGTAGTCTAGGAGTACTAATAAAATGAACTTCTTTATTATGTACATAAAGTGATTGATTAGGGCTAAGTTACCTGAGGTCTCTCCACCCCCCCCCCCTCCCCAAAAGGGAAAGTTACTGTGTAGAAGACAATAGTTGTGAAGGACAAGGCGATCGGAAGTGTTAGAGATCTGTGCTTTTAGATGTCGAACAAATTAAGCTCAGACAGCCCTATCAATTGCTTTTAGGTCTTCAACATGCCCTACAAGCTAGCCTAAAGTGTGTTTAATTTCCTATATCTCTCTTCCTGTTCCCTTCTCGTTTTCACCTTTTCCCCCCTGTTTTGCTTGTCCCGGAAAATCTATTCTTCTTCGATTTGAATATGAAAGAGATCTTGACATTTTGGAATCATATGCATATGCATTTCTTTCTCCCAGAGATATAAGTCATGAATCTCTCTTATCCTTGCTCCTTTTCAGAAAGAAGTTACTTTTCCTAGTAAATTATTTCTAGTACGTAGAATGTTCTACTGCCCAAGAACTTTGAAATTATTCGTTGTTGACCACAATCTTGTTCTGCATTGGTGCTGCTTAGGTTTGAGAACTTGTTGAAACTGTTAGCTAGTTTATAGATAGATCACTAGCTACTTGTACCAACAAGCGTGTCGTCTATGTAAAACTTCATTATTCCTAATTATTCATTTGGTTAGTCTTCTAACTGTATTTCTCTACAAATTTTCAGCCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCC-TTGCAAAAGAATAAAATTCCCTTCCAAAAC</genome_strand>
        <mrna_strand>TCATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAAAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGCAGAAGAGAAGAAGCAATAATCAAAGCTACTCACACCTAACTTCTCGTCGTGGCATTTTCTCAGCGTTAGATCAGCTGTATGACATTCCAGAGAGATGAATCTTCAAATTGGGGCAAAGCTAG-TTTTTGTTGCATTTATGTTAACAAGAATATTAGTTTTGTACTAGATCATGAATTTGCTATCC-TTTGTATTGTGAGACTTTGAAATGCCTTCCCAATCCTCATTTCTCCTACCCTTTGCAAAAGAATAATAATCCCTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694451" ref_strand="+" ref_description="SGN-E694451 [LH_Ea03P09](-)">
      <seq>catccgtactatgattcttgaaaagggtcagtaccttgagactgaacagatgtttcgtgaagctggtgaaaaatggcctgttattattcctgatgaagagcttaaacaaccatttcttggaataaagccaaagaaagcagaagagaagaagcaataatcaaagctactcacacctaacttctcgtcgtggcattttctcagcgttagatcagctgtatgacattccagagagatgaatcttcaaattggggcaaagctagtttttgttgcatttatgttaacaagaatattagttttgtactagatcatgaatttgctatcctttgtattgtgagactttgaaatgccttcccaatcctcatttatcgtaccctttgcaaaagaataataatccctttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="+" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="115629" stop="118840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115929" g_stop="116055" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118264" g_stop="118541" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="404" r_length="277" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="414"/>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="+" ref_id="SGN-E694451" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115929" e_stop="116055"/>
          <exon e_start="118264" e_stop="118541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAGGTGATAGCTTTTTCCCTTTTCCATTGATTGTATGTGGGTTTTTGTTGTGATTTGGTTGAGGCATATTGTCGAACAGGTTGAGTGTACCTACTTATGTTTTTTCTTTTAGTTTGATTTGTGTCCCCGGATTGGGGTTGAGAATGTTAGTGCAGTAGCGGAGTCGGGATTTTCAATAAGGTGATTCAAAATATATCAAAGTAAACACACAAAGAAACCAAATGAATCAAAAATATATAATTTTGGCCTTGTGTATGTATGTAGTTTAATTTTCAAGTGCTTGCACCCCTAACTCTGCCCTCAAGAGGGGGAGAGAAGATTATCATCTTTCTATAATTTTCTGAAATTTGTAGCTCTTTGTATAGATATGCTTCTCCAAGGATGATATAGTTTGTTTGTGATCCTCTACAACTGGACTGTCTAAATTGGATGATGAAATGAGAACTCTCTTGTTATGCTGGAGGTGTAACACATTCATGATTATTGTTACTATATTGTAGCTCGTCCTGTATCCGGGGCACCCTTATTTGCTATTTTGTATATCCCGTCCTGATTGAGCTCTTATCTGATGATCTATTTTCAAAGTCTTGGAACTTTTGTTTGCTAATTTTTAACGAATCCGTGTTTCTGGGTTTGTTAGCATCTGTACTGCCTATTGTTATCAACTAAAACATGAAAACTAATGAAAACTCCTTCAATTCGCATGAACTTGAGTAGAACAGTAAGATGCTCTCTTGTAGTAGTTAGTGGCTATCAATTTACCTAATTGTATGCATATGATTATGTTTTAAGAACCCTCACGTAATAATTTGTTGAGAAAGAATAACATGTTAATATTTGTTTGGTGAATATTATAACAGGTTAACATTCTTGAAATACTTTCTCTCCTTGATTTTAGAAGCTAAATGTTGCATTTACCAGTTCTTCTATATGCCAATGTGTTGCTTTGTGTTTGTGTTTCTTAAAAATGATACACGAGACAATTCTTAGATAGCTGAGAGTATGTTTATCATGCGGAGAGTAGCCCACTATCATAAAGAAGGGATCTTTATATCATGAAAGGAGTTGCATTAAGGTTTTTGCCTTTCTAGTTGTCAATATGTATCATTTAGGTTTTCATAAGACATCAGTTTGATGGATCTAAAATTTCATTAGTCAGTTATCCCAAAAAGATCAGTGGAATCTAGACGATGTACAGAGTTGTGATTAAAGGTGCTGCGATAAAGCAGTTTTTGTCTCACTTATTACTTTCTACAGATAATGTAGTCGTTTTGAGGAGCTGTGTGCCTTGATATCAGACCCTTGGAAAGACTATGTAAGATTAATTGTATAAGAGACTTTGAGGAACTTTCTATTTTTAACCGGACCATCGATAAGAGCAAGAATATATTTCTTTGTAGTTGATAGTTGATACTGATTTGGTTGCCACTGAAGAGTCACTCGTGTTGGTATGCTTCAAGATTAATTGCTAGTTATTAGTCTAGGAAGGTAATGTAGTCTAGGAGTACTAATAAAATGAACTTCTTTATTATGTACATAAAGTGATTGATTAGGGCTAAGTTACCTGAGGTCTCTCCACCCCCCCCCCCTCCCCAAAAGGGAAAGTTACTGTGTAGAAGACAATAGTTGTGAAGGACAAGGCGATCGGAAGTGTTAGAGATCTGTGCTTTTAGATGTCGAACAAATTAAGCTCAGACAGCCCTATCAATTGCTTTTAGGTCTTCAACATGCCCTACAAGCTAGCCTAAAGTGTGTTTAATTTCCTATATCTCTCTTCCTGTTCCCTTCTCGTTTTCACCTTTTCCCCCCTGTTTTGCTTGTCCCGGAAAATCTATTCTTCTTCGATTTGAATATGAAAGAGATCTTGACATTTTGGAATCATATGCATATGCATTTCTTTCTCCCAGAGATATAAGTCATGAATCTCTCTTATCCTTGCTCCTTTTCAGAAAGAAGTTACTTTTCCTAGTAAATTATTTCTAGTACGTAGAATGTTCTACTGCCCAAGAACTTTGAAATTATTCGTTGTTGACCACAATCTTGTTCTGCATTGGTGCTGCTTAGGTTTGAGAACTTGTTGAAACTGTTAGCTAGTTTATAGATAGATCACTAGCTACTTGTACCAACAAGCGTGTCGTCTATGTAAAACTTCATTATTCCTAATTATTCATTTGGTTAGTCTTCTAACTGTATTTCTCTACAAATTTTCAGCCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCC-TTGCAAAAGAATAAAATTCCCTTCCAAAAC</genome_strand>
        <mrna_strand>CATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAAAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGAAAGCAGAAGAGAAGAAGCAATAATCAAAGCTACTCACACCTAACTTCTCGTCGTGGCATTTTCTCAGCGTTAGATCAGCTGTATGACATTCCAGAGAGATGAATCTTCAAATTGGGGCAAAGCTAG-TTTTTGTTGCATTTATGTTAACAAGAATATTAGTTTTGTACTAGATCATGAATTTGCTATCC-TTTGTATTGTGAGACTTTGAAATGCCTTCCCAATCCTCATTTATCGTACCCTTTGCAAAAGAATAATAATCCCTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353854" ref_strand="+" ref_description="SGN-E353854 [cTOS-10-H12]">
      <seq>cagtttttcatgtattcacaccttcaggaaaggagaaaaactttgtttacagccatttgcatggaaccgttaaatatgaagctcatccaaagcctgtcggacttgcttttggaggatcctctggcaatgaaagaatatttgtagatgaagattttgctaaagttatagttcgtcatcatgcttgtgacaaaacttaccatcatggtcctctttaccctgaccaggggttcttaccggttgaagctctgattatggacgtggaggtattgggattgggaggaaaaagggctagagatattcagtcatcgtacaaaaagagggaagaactctttactgagcaaagacgaaaggttgacttgaaaacatttggaaattgggaagattcccccgagaaaatgatgatggatatggtttctgaccctaacagagttcgtagagaagatcgatgagttgattcttccctagaagagatttcacacgatccaggacttctatcttaatgtatatataaggagatgttggagttttatgtgctactacactttgaatagatttgtatgtttggctatataagtctgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="120355" stop="118563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120055" g_stop="120029" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120028" i_stop="119952" i_length="77">
            <donor d_prob="0.429" d_score="0.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119951" g_stop="119755" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="224" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119754" i_stop="119315" i_length="440">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119314" g_stop="119189" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="350" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119188" i_stop="119097" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119096" g_stop="118863" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="583" r_length="233" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E353854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120055" e_stop="120029"/>
          <exon e_start="119951" e_stop="119755"/>
          <exon e_start="119314" e_stop="119189"/>
          <exon e_start="119096" e_stop="118863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTTTCATGTATTCACACCTTCAGGTAGTGTATCTGGTCTTACCAGCTTGGATAGTTCTACATGAATGATGTGCCTAAGGCTAATGTATGTTCTTTGACAGGAAAGGAGAAAAACTTTGTTTACAGCCATTTGCATGGAACCGTTAAATATGAAGCTCATCCAAAGCCTGTCGGACTTGCTTTTGGAGGATCCTCTGGCAATGAAAGAATATTTGTAGATGAAGATTTTGCTAAAGTTATAGTTCGTCATCATGCTTGTGACAAAACTTACCATCATGGTCCTCTTTACCCTGACCAGGTATAGTAGATGAGTCATATGGTAGAGGTGTGAAAATACTTCGCGTATCGATAGTTGTATAGACTTCCTGCATATTGTTTGTTCCCCTTCATGCCTCTGTTAGTCAAACAACGCTTTCACTCTTTGACCAAAAAGAAGTTGCTCTTGGCATTTAATTGATTTTATTTGTAACTGCGATAAATTTGGAAAACTAGCTTAGAGTCTGCAGCACATGGATCCGATAAAAACACAAATCAACATATCCACTCTTTAGTTTGCATACATTTGTTAATATACTTGTGACTTGATTAGCATTAGCTACTAACTTTTATTTCTTGTATAAGTACCAAGGAAAAATGCCTTCTGTATAAATGATAATACTTCAATTGCTGACCATTGCTCTTCAGAAGTTCTTGTTGTTTCTCTTCTGAAGTTCTCAATCATCTCAATGCCATATTCAGGGGTTCTTACCGGTTGAAGCTCTGATTATGGACGTGGAGGTATTGGGATTGGGAGGAAAAAGGGCTAGAGATATTCAGTCATCGTACAAAAAGAGGGAAGAACTCTTTACTGAGCAAAGACGAAAGGTAATACAACTTCAGTGGACATTATTCATTGTTTCATCATGTTATCAGCAGCATGATAAAGTAAATTTTTTTTTCCTTAATATTATCTGCAGGTTGACTTGAAAACATTTGGAAATTGGGAAGATTCCCCCGAGAAAATGATGATGGATATGGTTTCTGACCCTAACAGAGTTCGTAGAGAAGATCGATGAGTTGATTCTTCCCTAGAAGAGATTTCACACGATCCAGGACTTCTATCTTAATGTATATATAAGGAGATGTTGGAGTTTTATGTGCTACTACACTTTGAATAAGATTTGTATGTTTGGCTATATAAGTCTGTATTT</genome_strand>
        <mrna_strand>CAGTTTTTCATGTATTCACACCTTCAG.............................................................................GAAAGGAGAAAAACTTTGTTTACAGCCATTTGCATGGAACCGTTAAATATGAAGCTCATCCAAAGCCTGTCGGACTTGCTTTTGGAGGATCCTCTGGCAATGAAAGAATATTTGTAGATGAAGATTTTGCTAAAGTTATAGTTCGTCATCATGCTTGTGACAAAACTTACCATCATGGTCCTCTTTACCCTGACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTCTTACCGGTTGAAGCTCTGATTATGGACGTGGAGGTATTGGGATTGGGAGGAAAAAGGGCTAGAGATATTCAGTCATCGTACAAAAAGAGGGAAGAACTCTTTACTGAGCAAAGACGAAAG............................................................................................GTTGACTTGAAAACATTTGGAAATTGGGAAGATTCCCCCGAGAAAATGATGATGGATATGGTTTCTGACCCTAACAGAGTTCGTAGAGAAGATCGATGAGTTGATTCTTCCCTAGAAGAGATTTCACACGATCCAGGACTTCTATCTTAATGTATATATAAGGAGATGTTGGAGTTTTATGTGCTACTACACTTTGAAT-AGATTTGTATGTTTGGCTATATAAGTCTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200958" ref_strand="+" ref_description="SGN-E200958 [cLEC-5-E11]">
      <seq>caatcttccaccgacgacaaccggcaaaagggaaaatctgtctatcagacttcagttaagcttgaaatgggtcaatcttcatcggccgagcaagtgtcgccggagcaacgggaagcagaatctgtagctgcttcaactggagctcttcctaatcttaagaaagctttctctgttctttctgatcctcaaactcactccatctccattcattcccttcaaaaatgttttgggttctctattgatggatcaacaaacgaagagtctgtagtgccaaaggaatttccagttttgatgagtaatttgagttcttcaatagttgacttgtttttcttgtctgaaaagggaggtatcagctgggttgagtttctaaagggccatataaagtgttctggaaggacagttagttcagcttcacttaatagtttgttgaggttatttgggatggtatctgttaaggcaggtcttccagaaaaactacagatcgtttccgatgaggatgattgtaaaatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="124175" stop="122635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123875" g_stop="123657" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123656" i_stop="123230" i_length="427">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123229" g_stop="122935" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="514" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E200958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123875" e_stop="123657"/>
          <exon e_start="123229" e_stop="122935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAAGTAATTCTTCTTCTTGTTCCGCACGTAAATTTTTTTTTTTGCTTATCTTTGCTCAATTTACATTTTGCTGACATTGTTTGAATCACCTACAACTGGGGTTTTAGCAAAAGTTGAAATTTTCATGGAATTTATGGATTTCCCGAACTTTAAACTTTTGCTTATCTGTGCTCAATTTGCATTTTGGTGACTATTCTTGAATCACCCACAAATGGGGTTGTAGTAAAAACTGGAATCTAGGTGGAATTTATGGATCTTCCGTTTCAGTTTTTGAGTTATTTTTTGGTTGTTTTAAGATGTTTACATTTGAGAGACTTTTTTTGCATAAACCACAAGTGCTTTTGTGGCAAAAGTTGGGACTTTCATGAATTTTCTGTGTTTAGTTATTTTTTTGAGCTGTTTTGTGATTAGTTTATGTTGTTGGTTACAGAAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTGGAAGGACAGTTAGTTCAGCTTCACTTAATAGTTTGTTGAGGTTATTTGGGATGGTATCTGTTAAGGCAGGTCTTCCAGAAAAACTACAGATCGTTTCCGATGAGGATGATTGTAAAATCAGCG</genome_strand>
        <mrna_strand>CAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTGGAAGGACAGTTAGTTCAGCTTCACTTAATAGTTTGTTGAGGTTATTTGGGATGGTATCTGTTAAGGCAGGTCTTCCAGAAAAACTACAGATCGTTTCCGATGAGGATGATTGTAAAATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305154" ref_strand="+" ref_description="SGN-E305154 [cLEY-18-B15]">
      <seq>ctcgtgcgcacgaagtgaacttccaatcttccaccgacgacaaccggcaaaagggaaaatctgtctatcagacttcagttaagcttgaaatgggtcaatcttcatcggccgagcaagtgtcgccggagcaacgggaagcagaatctgtagctgcttcaactggagctcttcctaatcttaagaaagctttctctgttctttctgatcctcaaactcactccatctccattcattcccttcaaaaatgttttgggttctctattgatggatcaacaaacgaagagtctgtagtgccaaaggaatttccagttttgatgagtaatttgagttcttcaatagttgacttgtttttcttgtctgaaaagggaggtatcagctgggttgagtttctaaagggccatataaagtgttctggaaggacagttagttcagcttcacttaatagtttgttgaggttatttgggatggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="124183" stop="122701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123883" g_stop="123657" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="242" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123656" i_stop="123230" i_length="427">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123229" g_stop="123001" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="471" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E305154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123883" e_stop="123657"/>
          <exon e_start="123229" e_stop="123001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAAGTAATTCTTCTTCTTGTTCCGCACGTAAATTTTTTTTTTTGCTTATCTTTGCTCAATTTACATTTTGCTGACATTGTTTGAATCACCTACAACTGGGGTTTTAGCAAAAGTTGAAATTTTCATGGAATTTATGGATTTCCCGAACTTTAAACTTTTGCTTATCTGTGCTCAATTTGCATTTTGGTGACTATTCTTGAATCACCCACAAATGGGGTTGTAGTAAAAACTGGAATCTAGGTGGAATTTATGGATCTTCCGTTTCAGTTTTTGAGTTATTTTTTGGTTGTTTTAAGATGTTTACATTTGAGAGACTTTTTTTGCATAAACCACAAGTGCTTTTGTGGCAAAAGTTGGGACTTTCATGAATTTTCTGTGTTTAGTTATTTTTTTGAGCTGTTTTGTGATTAGTTTATGTTGTTGGTTACAGAAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTGGAAGGACAGTTAGTTCAGCTTCACTTAATAGTTTGTTGAGGTTATTTGGGATGGTAT</genome_strand>
        <mrna_strand>TGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTGGAAGGACAGTTAGTTCAGCTTCACTTAATAGTTTGTTGAGGTTATTTGGGATGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305186" ref_strand="+" ref_description="SGN-E305186 [cLEY-18-H4]">
      <seq>ctcgtgcgcacgaggtgaacttccaatcttccaccgacgacaaccggcaaaagggaaaatctgtctatcagacttcagttaagcttgaaatgggtcaatcttcatcggccgagcaagtgtcgccggagcaacgggaagcagaatctgtagctgcttcaactggagctcttcctaatcttaagaaagctttctctgttctttctgatcctcaaactcactccatctccattcattcccttcaaaaatgttttgggttctctattgatggatcaacacacgaagagtctgtagtgccaaaggaatttccagttttgatgagtaatttgagttcttcaatagttgacttgtttttcttgtctgaaaagggaggtatcagctgggttgagtttctaaagggccatataaagtgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="124183" stop="122758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123883" g_stop="123657" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="242" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123656" i_stop="123230" i_length="427">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123229" g_stop="123058" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="414" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E305186" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123883" e_stop="123657"/>
          <exon e_start="123229" e_stop="123058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAAGTAATTCTTCTTCTTGTTCCGCACGTAAATTTTTTTTTTTGCTTATCTTTGCTCAATTTACATTTTGCTGACATTGTTTGAATCACCTACAACTGGGGTTTTAGCAAAAGTTGAAATTTTCATGGAATTTATGGATTTCCCGAACTTTAAACTTTTGCTTATCTGTGCTCAATTTGCATTTTGGTGACTATTCTTGAATCACCCACAAATGGGGTTGTAGTAAAAACTGGAATCTAGGTGGAATTTATGGATCTTCCGTTTCAGTTTTTGAGTTATTTTTTGGTTGTTTTAAGATGTTTACATTTGAGAGACTTTTTTTGCATAAACCACAAGTGCTTTTGTGGCAAAAGTTGGGACTTTCATGAATTTTCTGTGTTTAGTTATTTTTTTGAGCTGTTTTGTGATTAGTTTATGTTGTTGGTTACAGAAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTG</genome_strand>
        <mrna_strand>TGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTTGGGTTCTCTATTGATGGATCAACACACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321112" ref_strand="-" ref_description="SGN-E321112 [cTOB-13-C10]">
      <seq>gaaagaatgtttggacttgaggggcttatgaatgacactcgaggctcgagctggaagttggtatatgtggattttgagaatgatgtcctccgtgttggggatgatccttgagaggaatttgtaggatgtgttcgatgcatcagaattttatcgcgtactgaagtccagcaaatgggagaggaaggaatgcagctattaaactctgttggactgcaaagcatcaatggatcaacatcagaattcccgaactaagctcaatacaagtgatctatgagagctcacagtgattgatcactagagttgcatggagcaacatgcaaatgtaatgttgttgaacaacttaacaagaagatgattcgctaggtttctgttatagtagtgttgtaatttatgagtgttgatgactctgtaagaaaacagctttagcatattaaagtatgccttccacaaaaaaaaaaaagaaaaaactcgagacagtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="125226" stop="109475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124926" g_stop="124814" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124655" g_stop="124313" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="456" r_length="343" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124312" i_stop="123437" i_length="876">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.191" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123436" g_stop="123420" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="473" r_length="17" r_score="0.529"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123419" i_stop="123230" i_length="190">
            <donor d_prob="0.151" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123229" g_stop="123221" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="481" r_length="8" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E321112" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124926" e_stop="124814"/>
          <exon e_start="124655" e_stop="124313"/>
          <exon e_start="123436" e_stop="123420"/>
          <exon e_start="123229" e_stop="123221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGAGTAAGTTCTCTTTGACACAAATCTCTCTCATATTCAGGTTGCAATACGAAGCGCATACTATGCATTTTTAACTGTAGATCAATAACTTCACAATGCATAATCCAGAAACAAACTCAGTATGATGATGTTCAACTAATATCTCTTGAATGGTCTTGCAGGGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTCCACATATTAGAGTTGTTTTCAGCTGCATCTTGTTTGTCTTACAAGGCTGTTTCTTAATGGAGAAAGTTGCTATGACTTGGAAATGAAAGTACAATATCTTGCATTTTTTGTAAGACGGTGATTTCATAGTTTGAACTTATGATCACTTGACTATTTTTGTAAGACGTTGATATCACCTCCTTGATAATATATTGTATTAGCAAAGTGCAAGCAAAATATTACGACACGTTAAAAAAAATATATATTAATATTGAAACTCGATTAAGATACGATAAAAAAAATATATATTAATATTGTAAGTGAGTACTACTACTTTCTAATTTTTGAATAAATATTGCCTCAATATTTTATTGTCTTTTGGGTGGCACAAAGAGCCACATAATCGAAATGTATATAAATCTTATTAATACGTGTCAATTCTCAACAATTCCTTGATGCTTTGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAAGTAATTCTTCTTCTTGTTCCGCACGTAAATTTTTTTTTTTGCTTATCTTTGCTCAATTTACATTTTGCTGACATTGTTTGAATCACCTACAACTGGGGTTTTAGCAAAAGTTGAAATTTTCATGGAATTTATGGATTTCCCGAACTTTAAACTTTTGCTTATCTGTGCTCAATTTGCATTTTGGTGACTATTCTTGAATCACCCACAAATGGGGTTGTAGTAAAAACTGGAATCTAGGTGGAATTTATGGATCTTCCGTTTCAGTTTTTGAGTTATTTTTTGGTTGTTTTAAGATGTTTACATTTGAGAGACTTTTTTTGCATAAACCACAAGTGCTTTTGTGGCAAAAGTTGGGACTTTCATGAATTTTCTGTGTTTAGTTATTTTTTTGAGCTGTTTTGTGATTAGTTTATGTTGTTGGTTACAGAAATGTTTT</genome_strand>
        <mrna_strand>GAAAGAATGTTTGGACTTGAGGGGCTTATGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCGTGTTGGGGATGATCCTTGAGA..............................................................................................................................................................GGAATTTGTAGGATGTGTTCGATGCATCAGAATTTTATCGCGTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTATTAAACTCTGTTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCGAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCGCTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAAGTATGCCTTCCACAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAAAACTCGAG..............................................................................................................................................................................................ACA-GTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700539" ref_strand="+" ref_description="SGN-E700539 [FA13BF08]">
      <seq>gtttcgagcacagtgttagatgagttctgcaatttgaagcatactgatttccagaatccttcagattttctattaggcaacatcagttctagtcaagatgttcaatctcaaattacatcagccagcctggcagattctcagaatttctctgtacaagaatttgctgacaactcgggtggtgcatcatcaagcaatgtaaattttgatgaatgcaatcttttgcagaatagctcatggcagcaagttgctccacgtgtgcggacatatacaaagattcaaaagactggatctgtaggaagatcaattgatgtctctggtttcaaaaattatgaagagctgcagtctgaaattgaaagaatgtttggacttgaggggcttctgaatgacactcgaggctcgagctggaagttggtatatgtggattttgagaatgatgtcctccttgttggggatgatccttgggaggaatttgttggatgtgttcgatgcatcagaattttatcgcctactgaagttcagcaaatgggagaggaaggaatgcagctactgaactctgctggactgcaaagcatcaatggatcaacatcagaattcccaaactaagctcaatacaagtgatctatgagagctcacagtgattgatcactagagttgcatggagcaacatgcaaatgtgatgttgttgaacaacttaacaagaagatgattcactaggtttctgttatgttagtgttgtaatttatgagtgttgatgactctgtaagaaaacagctttagcatattaaactttgccttccacatattagagntgttttcagctgcatcttgtttgtcttataaggctgtttcttaatggagaaagttgctctgacttggaaatgaaagtacaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="125876" stop="123927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125576" g_stop="125304" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125004" g_stop="124814" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="464" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124655" g_stop="124226" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="894" r_length="430" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E700539" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125576" e_stop="125304"/>
          <exon e_start="125004" e_stop="124814"/>
          <exon e_start="124655" e_stop="124226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAGGTAAGCGCTTTATATGTTGTAGCTATGTTATATCAATCTTAGTAGCAAGGATAATCCTGAGTCGATAGGTATTATGCTCATGTTAACTCATTACTTTGAGTTATAGAATCTTCTTTGTCTCTTTCGGTTATTTCACCACTTCTTTTTAAGGGTTCCCTTTGCATTTTCATAACATGTCCTTGCATATGCAATCTTTATTTGTTTATCTGTTTATATATTATCCATTTATTTACTGCGAAATAGTCACTTTTGTATTTCAATGTTCTATATGTAATCTGACTGGATTTACTGGTGAACAGATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGAGTAAGTTCTCTTTGACACAAATCTCTCTCATATTCAGGTTGCAATACGAAGCGCATACTATGCATTTTTAACTGTAGATCAATAACTTCACAATGCATAATCCAGAAACAAACTCAGTATGATGATGTTCAACTAATATCTCTTGAATGGTCTTGCAGGGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTCCACATATTAGAGTTGTTTTCAGCTGCATCTTGTTTGTCTTACAAGGCTGTTTCTTAATGGAGAAAGTTGCTATGACTTGGAAATGAAAGTACAATATC</genome_strand>
        <mrna_strand>GTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGCCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG...........................................................................................................................................................................................................................................................................................................ATTCAAAAGACTGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCAGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGA..............................................................................................................................................................GGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTTCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTGATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATGTTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTTTGCCTTCCACATATTAGAGNTGTTTTCAGCTGCATCTTGTTTGTCTTATAAGGCTGTTTCTTAATGGAGAAAGTTGCTCTGACTTGGAAATGAAAGTACAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701482" ref_strand="+" ref_description="SGN-E701482 [FA16AD08]">
      <seq>gtaactgcgggagcacagtgattgataattctgtttcgagcacagtgttagatgagttctgcaatttgaagcatactgatttccagaatccttcagattttctattaggcaacatcagttctagtcaagatgttcaatctcaaattacatcagccagcctggcagattctcagaatttctctgtacaagaatttgctgacaactcgggtggtgcatcatcaagcaatgtaaattttgatgaatgcaatcttttgcagaatagctcatggcagcaagttgctccacgtgtgcggacatatacaaagattcaaaagactggatctgtaggaagatcaattgatgtctctggtttcaaaaattatgaagagctgcagtctgaaattgaaagaatgtttggacttgaggggcttctgaatgacactcgaggctcgagctggaagttggtatatgtggattttgagaatgatgtcctccttgttggggatgatccttgggaggaatttgttggatgtgttcgatgcatcagaattttatcgcctactgaagttcagcaaatgggagaggaaggaatgcagctactgaactctgctggactgcaaagcatcaatggatcaacatcagaattcccaaactaagctcaatacaagtgatctatgagagctcacagtgattgatcactagagttgcatggagcaacatgcaaatgtgatgttgttgaacaacttaacaagaagatgattcactaggtttctgttatgttagtgttgtaatttatgagtgttgatgactctgtaagaaaacagctttagcatattaaactttgccttccacatattagagttgttttcagctgcatcttgtttgtcttataaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="125908" stop="123975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125608" g_stop="125304" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125004" g_stop="124814" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="496" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124655" g_stop="124275" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="877" r_length="381" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E701482" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125608" e_stop="125304"/>
          <exon e_start="125004" e_stop="124814"/>
          <exon e_start="124655" e_stop="124275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAGGTAAGCGCTTTATATGTTGTAGCTATGTTATATCAATCTTAGTAGCAAGGATAATCCTGAGTCGATAGGTATTATGCTCATGTTAACTCATTACTTTGAGTTATAGAATCTTCTTTGTCTCTTTCGGTTATTTCACCACTTCTTTTTAAGGGTTCCCTTTGCATTTTCATAACATGTCCTTGCATATGCAATCTTTATTTGTTTATCTGTTTATATATTATCCATTTATTTACTGCGAAATAGTCACTTTTGTATTTCAATGTTCTATATGTAATCTGACTGGATTTACTGGTGAACAGATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGAGTAAGTTCTCTTTGACACAAATCTCTCTCATATTCAGGTTGCAATACGAAGCGCATACTATGCATTTTTAACTGTAGATCAATAACTTCACAATGCATAATCCAGAAACAAACTCAGTATGATGATGTTCAACTAATATCTCTTGAATGGTCTTGCAGGGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTCCACATATTAGAGTTGTTTTCAGCTGCATCTTGTTTGTCTTACAAGGCTG</genome_strand>
        <mrna_strand>GTAACTGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGCCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG...........................................................................................................................................................................................................................................................................................................ATTCAAAAGACTGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCAGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGA..............................................................................................................................................................GGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTTCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTGATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATGTTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTTTGCCTTCCACATATTAGAGTTGTTTTCAGCTGCATCTTGTTTGTCTTATAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715356" ref_strand="+" ref_description="SGN-E715356 [FB14AB11]">
      <seq>agattttctattaggcaacatcagttctagtcaagatgttcaatctcaaattacatcagccagcctggcagattctcagaatttctctgtacaagaatttgctgacaactcgggtggtgcatcatcaagcaatgtaaattttgatgaatgcaatcttttgcagaatagctcatggcagcaagttgctccacgtgtgcggacatatacaaagattcaaaagactggatctgtaggaagatcaattgatgtctctggtttcaaaaattatgaagagctgcagtctgaaattgaaagaatgtttggacttgaggggcttctgaatgacactcgaggctcgagctggaagttggtatatgtggattttgagaatgatgtcctccttgttggggatgatccttgggaggaatttgttggatgtgttcgatgcatcagaattttatcgcctactgaagttcagcaaatgggagaggaaggaatgcagctactgaactctgctggactgcaaagcatcaatggatcaacatcagaattcccaaactaagctcaatacaagtgatctatgagagctcacagtgattgatcactagagttgcatggagcaacatgcaaatgtgatgttgttgaacaacttaacaagaagatgattcactaggtttctgttatgttagtgttgtaatttatgagtgttgatgactctgtaagaaaacagctttagcatattaaactttgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="125814" stop="124024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125514" g_stop="125304" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125004" g_stop="124814" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="402" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124655" g_stop="124324" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="734" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E715356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125514" e_stop="125304"/>
          <exon e_start="125004" e_stop="124814"/>
          <exon e_start="124655" e_stop="124324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAGGTAAGCGCTTTATATGTTGTAGCTATGTTATATCAATCTTAGTAGCAAGGATAATCCTGAGTCGATAGGTATTATGCTCATGTTAACTCATTACTTTGAGTTATAGAATCTTCTTTGTCTCTTTCGGTTATTTCACCACTTCTTTTTAAGGGTTCCCTTTGCATTTTCATAACATGTCCTTGCATATGCAATCTTTATTTGTTTATCTGTTTATATATTATCCATTTATTTACTGCGAAATAGTCACTTTTGTATTTCAATGTTCTATATGTAATCTGACTGGATTTACTGGTGAACAGATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGAGTAAGTTCTCTTTGACACAAATCTCTCTCATATTCAGGTTGCAATACGAAGCGCATACTATGCATTTTTAACTGTAGATCAATAACTTCACAATGCATAATCCAGAAACAAACTCAGTATGATGATGTTCAACTAATATCTCTTGAATGGTCTTGCAGGGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTC</genome_strand>
        <mrna_strand>AGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGCCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG...........................................................................................................................................................................................................................................................................................................ATTCAAAAGACTGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCAGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGA..............................................................................................................................................................GGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTTCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTGATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATGTTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTTTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348951" ref_strand="+" ref_description="SGN-E348951 [cTOF-29-K6]">
      <seq>ctgtgtcgacctccactttgacaaagcatgataattcttttatgttgcctgatacaattggtcatggattagctccaataggccaggatttgtgggatcatcagttgaatgatgttaagtgcttttcccagacaaaccttcaggttccactagacataactaacatgcagttcctacctgattcttatggttttaaggacctgtcagaggagagccataaccaaagtgatatatatagctgtcttaactttgatagtaacagcgggagcacagtgattgataattctgtttcgagcacagtgttagatgagttctgcaatttgaagcatactgatttccagaatccttcagattttctattaggcaacatcagttctagtcaagatgttcaatctcaaattacatcagccagtctggcagattctcagaatttctctgtacaagaatttgctgacaactcgggtggtgcatcatcaagcaatgtaaattttgatgaatgcaatcttttgcagaatagctcatggcagcaagttgctccacgtgtgcggacatatacaaagattcaaaagacaggatctgtaggaagatcaattgatgtcctctggtttcaaaaattatgaagagnctgcggtctgaaattgaaagaatgtttggacttgaggggcttctgaatgacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0111P03-1W2Oc/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0111P03.1" temp_strand="-" temp_description="C04HBa0111P03.1  CU468223.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0111P03 upload_account_name:france">
        <position start="126163" stop="124587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125863" g_stop="125304" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125004" g_stop="124887" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="680" r_length="120" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0111P03.1" gen_strand="-" ref_id="SGN-E348951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0111P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125863" e_stop="125304"/>
          <exon e_start="125004" e_stop="124887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCGACCTCCACTTTGACAAAGCATGATAATTCTTTTATGTTGCCTGATACAATTGGTCATGGATTAGCTCCAATAGGCCAGGATTTGTGGGATCATCAGTTGAATGATGTTAAGTGCTTTTCCCAGACAAACCTTCAGGTTCCACTAGACATAACTAACATGCAGTTCCTACCTGATTCTTATGGTTTTAAGGACCTGTCAGAGGAGAGCCATAACCAAAGTGATATATATAGCTGTCTTAACTTTGATAGTAACAGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAGGTAAGCGCTTTATATGTTGTAGCTATGTTATATCAATCTTAGTAGCAAGGATAATCCTGAGTCGATAGGTATTATGCTCATGTTAACTCATTACTTTGAGTTATAGAATCTTCTTTGTCTCTTTCGGTTATTTCACCACTTCTTTTTAAGGGTTCCCTTTGCATTTTCATAACATGTCCTTGCATATGCAATCTTTATTTGTTTATCTGTTTATATATTATCCATTTATTTACTGCGAAATAGTCACTTTTGTATTTCAATGTTCTATATGTAATCTGACTGGATTTACTGGTGAACAGATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGT-CTCTGGTTTCAAAAATTATGAAGAG-CTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTC</genome_strand>
        <mrna_strand>CTGTGTCGACCTCCACTTTGACAAAGCATGATAATTCTTTTATGTTGCCTGATACAATTGGTCATGGATTAGCTCCAATAGGCCAGGATTTGTGGGATCATCAGTTGAATGATGTTAAGTGCTTTTCCCAGACAAACCTTCAGGTTCCACTAGACATAACTAACATGCAGTTCCTACCTGATTCTTATGGTTTTAAGGACCTGTCAGAGGAGAGCCATAACCAAAGTGATATATATAGCTGTCTTAACTTTGATAGTAACAGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG...........................................................................................................................................................................................................................................................................................................ATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCCTCTGGTTTCAAAAATTATGAAGAGNCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>128</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="736" PGL_stop="221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="736" e_stop="221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="736" e_stop="221" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="736" stop="221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGATGGATCGAGGTCAAGGGAAGAAGCTTTTGATGGTCACATGGCAATTGGCAGGGTTTTGTATGATCAACATTTGTTTAAGGAAGCACTGGTGAGCTTTAAGAGAGCTTGTGAGTTGCAGCCTGCTGATGTTAGGCCACATTTCAGGGCTGGCAATTGTTTGTATGTGCTCGGGAGACATAGTGAGTCGAAAGAGGAGTTCTTGCTGGCATTGGAGGCTGCTGAAGCTGGTGGCAGTCAGTGGGCTTATTTGCTTCCTCAGATTCATGTGAATTTGGGAATTGCTCTTGAAGGCGAAGGTATGGTTATAAGTGCCTGTGAACATTATAGAGAGGCTGCTATTTTGTGTCCAACTCATTTTAGAGCTTTGAAACTTTTGGGTAGTGCACTTTTTGGCGTGGGTGAGTATAAGGCAGCTGTTAAGGCATTAGAAGAGGCCATTTATATGAAGAGTGACTATGCTGATGCACATTGTGATCTTGCTTCTGCATTGCACGCAATGGGTGATGATGAT</gDNA_template>
            <first_frame> A  D  G  S  R  S  R  E  E  A  F  D  G  H  M  A  I  G  R  V  L  Y  D  Q  H  L  F  K  E  A  L  V  S  F  K  R  A  C  E  L  Q  P  A  D  V  R  P  H  F  R  A  G  N  C  L  Y  V  L  G  R  H  S  E  S  K  E  E  F  L  L  A  L  E  A  A  E  A  G  G  S  Q  W  A  Y  L  L  P  Q  I  H  V  N  L  G  I  A  L  E  G  E  G  M  V  I  S  A  C  E  H  Y  R  E  A  A  I  L  C  P  T  H  F  R  A  L  K  L  L  G  S  A  L  F  G  V  G  E  Y  K  A  A  V  K  A  L  E  E  A  I  Y  M  K  S  D  Y  A  D  A  H  C  D  L  A  S  A  L  H  A  M  G  D  D  D </first_frame>
            <second_frame>  L  M  D  R  G  Q  G  K  K  L  L  M  V  T  W  Q  L  A  G  F  C  M  I  N  I  C  L  R  K  H  W  *  A  L  R  E  L  V  S  C  S  L  L  M  L  G  H  I  S  G  L  A  I  V  C  M  C  S  G  D  I  V  S  R  K  R  S  S  C  W  H  W  R  L  L  K  L  V  A  V  S  G  L  I  C  F  L  R  F  M  *  I  W  E  L  L  L  K  A  K  V  W  L  *  V  P  V  N  I  I  E  R  L  L  F  C  V  Q  L  I  L  E  L  *  N  F  W  V  V  H  F  L  A  W  V  S  I  R  Q  L  L  R  H  *  K  R  P  F  I  *  R  V  T  M  L  M  H  I  V  I  L  L  L  H  C  T  Q  W  V  M  M   </second_frame>
            <third_frame>   *  W  I  E  V  K  G  R  S  F  *  W  S  H  G  N  W  Q  G  F  V  *  S  T  F  V  *  G  S  T  G  E  L  *  E  S  L  *  V  A  A  C  *  C  *  A  T  F  Q  G  W  Q  L  F  V  C  A  R  E  T  *  *  V  E  R  G  V  L  A  G  I  G  G  C  *  S  W  W  Q  S  V  G  L  F  A  S  S  D  S  C  E  F  G  N  C  S  *  R  R  R  Y  G  Y  K  C  L  *  T  L  *  R  G  C  Y  F  V  S  N  S  F  *  S  F  E  T  F  G  *  C  T  F  W  R  G  *  V  *  G  S  C  *  G  I  R  R  G  H  L  Y  E  E  *  L  C  *  C  T  L  *  S  C  F  C  I  A  R  N  G  *  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="736" stop="221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADGSRSREEAFDGHMAIGRVLYDQHLFKEALVSFKRACELQPADVRPHFRAGNCLYVLGRHSESKEEFLLALEAAEAGGSQWAYLLPQIHVNLGIALEGEGMVISACEHYREAAILCPTHFRALKLLGSALFGVGEYKAAVKALEEAIYMKSDYADAHCDLASALHAMGDDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1681" PGL_stop="1133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1681" e_stop="1133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="1681" e_stop="1133" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1681" stop="1133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCCTCTTTGCCCTTTTTCTCTTTCTCCAGATCCAAATTATAGCAAAAATTTAATCTTTTTTCAATACCCATTTTTCTATTTCTCCAATTTTCCTTAATTTATCTTCTTTTTGAAACCCTAACCCTAAAAATCCCATCTTTTTTTGCTTTCAGTATAAAACCCTAATTTTTACAGGTTCTCTACCTTTTATCCGCCAAGTTTGAATCTTGATTGAAGCTTTCGACACCCAATAACGTGAAAGGTTAGAATTTGTACTTGAATTGGTGTTAATTTTTGGGAAATGGCTACGAGGGGAAGCAGATCGGAGAAGGTGAAGAGGATTTTTCAGCAATTTGATGGTAATCATGATGGAGGTCTTAATCGAGAGGAAATGGCAGCTTTGGTGGTTGCTGTAAACCCTAGGGTTAAGTTTAGCGAAGAGCAAATTAATGCTATTCTCGATGAGGTTTTCCGTACGTACAGCGAGTTTATTGATGGTGAAAAGGGGCTTACTTATGAGGGACTTTTGCGTACGTATGATGATGGTGCTGGTGATGTTGATCGT</gDNA_template>
            <first_frame> L  L  P  L  C  P  F  S  L  S  P  D  P  N  Y  S  K  N  L  I  F  F  Q  Y  P  F  F  Y  F  S  N  F  P  *  F  I  F  F  L  K  P  *  P  *  K  S  H  L  F  L  L  S  V  *  N  P  N  F  Y  R  F  S  T  F  Y  P  P  S  L  N  L  D  *  S  F  R  H  P  I  T  *  K  V  R  I  C  T  *  I  G  V  N  F  W  E  M  A  T  R  G  S  R  S  E  K  V  K  R  I  F  Q  Q  F  D  G  N  H  D  G  G  L  N  R  E  E  M  A  A  L  V  V  A  V  N  P  R  V  K  F  S  E  E  Q  I  N  A  I  L  D  E  V  F  R  T  Y  S  E  F  I  D  G  E  K  G  L  T  Y  E  G  L  L  R  T  Y  D  D  G  A  G  D  V  D  R </first_frame>
            <second_frame>  F  F  L  F  A  L  F  L  F  L  Q  I  Q  I  I  A  K  I  *  S  F  F  N  T  H  F  S  I  S  P  I  F  L  N  L  S  S  F  *  N  P  N  P  K  N  P  I  F  F  C  F  Q  Y  K  T  L  I  F  T  G  S  L  P  F  I  R  Q  V  *  I  L  I  E  A  F  D  T  Q  *  R  E  R  L  E  F  V  L  E  L  V  L  I  F  G  K  W  L  R  G  E  A  D  R  R  R  *  R  G  F  F  S  N  L  M  V  I  M  M  E  V  L  I  E  R  K  W  Q  L  W  W  L  L  *  T  L  G  L  S  L  A  K  S  K  L  M  L  F  S  M  R  F  S  V  R  T  A  S  L  L  M  V  K  R  G  L  L  M  R  D  F  C  V  R  M  M  M  V  L  V  M  L  I   </second_frame>
            <third_frame>   S  S  S  L  P  F  F  S  F  S  R  S  K  L  *  Q  K  F  N  L  F  S  I  P  I  F  L  F  L  Q  F  S  L  I  Y  L  L  F  E  T  L  T  L  K  I  P  S  F  F  A  F  S  I  K  P  *  F  L  Q  V  L  Y  L  L  S  A  K  F  E  S  *  L  K  L  S  T  P  N  N  V  K  G  *  N  L  Y  L  N  W  C  *  F  L  G  N  G  Y  E  G  K  Q  I  G  E  G  E  E  D  F  S  A  I  *  W  *  S  *  W  R  S  *  S  R  G  N  G  S  F  G  G  C  C  K  P  *  G  *  V  *  R  R  A  N  *  C  Y  S  R  *  G  F  P  Y  V  Q  R  V  Y  *  W  *  K  G  A  Y  L  *  G  T  F  A  Y  V  *  *  W  C  W  *  C  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1417" stop="1133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGVNFWEMATRGSRSEKVKRIFQQFDGNHDGGLNREEMAALVVAVNPRVKFSEEQINAILDEVFRTYSEFIDGEKGLTYEGLLRTYDDGAGDVDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10408" PGL_stop="11369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10408" e_stop="10617"/>
            <exon e_start="10714" e_stop="10803"/>
            <exon e_start="10887" e_stop="10987"/>
            <exon e_start="11091" e_stop="11204"/>
            <exon e_start="11288" e_stop="11369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.708" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10408" e_stop="10617" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="10618" i_stop="10713" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10714" e_stop="10803" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.959">
            <gDNA_intron_boundary i_start="10804" i_stop="10886" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="10887" e_stop="10987" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.708">
            <gDNA_intron_boundary i_start="10988" i_stop="11090" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11091" e_stop="11204" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.959">
            <gDNA_intron_boundary i_start="11205" i_stop="11287" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="11288" e_stop="11369" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10408" stop="10617"/>
              <exon start="10714" stop="10803"/>
              <exon start="10887" stop="10987"/>
              <exon start="11091" stop="11204"/>
              <exon start="11288" stop="11369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAGGAGGCATCTCAATATGGTGATGATCACGGATCAGTTGCACATGAAGAGAAAGAGAAGATTTTTGTTGCAGTTAGATTGAGACCTTTGAATGAGAGGGAGATTACATGTAACGATGTCTCGGATTGGGAATGCATCAATAACACCACAATTTTTTATAAAAATTCTATGTCAGAGCGTTCATTGTTTCCAACTGCTTGTGCATATG : ACCGAGTATTTGGGTATGATTGCTCCACAAGGCAGGTGTATGAGGAAGCCGCCAAAGGAGTTGCTCTTTCAGTTCTTAGTGGTATTAATT : CAAGTATCTTCGCATATGGACAGACAAGTAGTGGGAAAACGTATACTATGTCTGGAATCACCGAATACACATTAGCAGATATATATGATCATATATGCAGG : AACGTAGACCGAGAATTTACACTAAAATTCTCTGCCATGGAGATATACAATGAAGTTGTTAGAGACCTTCTAACCCCAGAGGACACTCCACTTAGACTCCTCGATGATCCAGAG : AGAGGAACTGTAGTTGAAAAACTTACAGAGATAACACTGAAGGACTGGAACCATCTAAAAGAACTGCTGTCAGTATGTGAAG</gDNA_template>
            <first_frame> G  R  R  H  L  N  M  V  M  I  T  D  Q  L  H  M  K  R  K  R  R  F  L  L  Q  L  D  *  D  L  *  M  R  G  R  L  H  V  T  M  S  R  I  G  N  A  S  I  T  P  Q  F  F  I  K  I  L  C  Q  S  V  H  C  F  Q  L  L  V  H  M  :  T  E  Y  L  G  M  I  A  P  Q  G  R  C  M  R  K  P  P  K  E  L  L  F  Q  F  L  V  V  L  I  :  Q  V  S  S  H  M  D  R  Q  V  V  G  K  R  I  L  C  L  E  S  P  N  T  H  *  Q  I  Y  M  I  I  Y  A  G :   T  *  T  E  N  L  H  *  N  S  L  P  W  R  Y  T  M  K  L  L  E  T  F  *  P  Q  R  T  L  H  L  D  S  S  M  I  Q  R :   E  E  L  *  L  K  N  L  Q  R  *  H  *  R  T  G  T  I  *  K  N  C  C  Q  Y  V  K </first_frame>
            <second_frame>  G  G  G  I  S  I  W  *  *  S  R  I  S  C  T  *  R  E  R  E  D  F  C  C  S  *  I  E  T  F  E  *  E  G  D  Y  M  *  R  C  L  G  L  G  M  H  Q  *  H  H  N  F  L  *  K  F  Y  V  R  A  F  I  V  S  N  C  L  C  I  * :   P  S  I  W  V  *  L  L  H  K  A  G  V  *  G  S  R  Q  R  S  C  S  F  S  S  *  W  Y  *  F :   K  Y  L  R  I  W  T  D  K  *  W  E  N  V  Y  Y  V  W  N  H  R  I  H  I  S  R  Y  I  *  S  Y  M  Q   : E  R  R  P  R  I  Y  T  K  I  L  C  H  G  D  I  Q  *  S  C  *  R  P  S  N  P  R  G  H  S  T  *  T  P  R  *  S  R   : E  R  N  C  S  *  K  T  Y  R  D  N  T  E  G  L  E  P  S  K  R  T  A  V  S  M  *   </second_frame>
            <third_frame>   E  E  A  S  Q  Y  G  D  D  H  G  S  V  A  H  E  E  K  E  K  I  F  V  A  V  R  L  R  P  L  N  E  R  E  I  T  C  N  D  V  S  D  W  E  C  I  N  N  T  T  I  F  Y  K  N  S  M  S  E  R  S  L  F  P  T  A  C  A  Y   : D  R  V  F  G  Y  D  C  S  T  R  Q  V  Y  E  E  A  A  K  G  V  A  L  S  V  L  S  G  I  N   : S  S  I  F  A  Y  G  Q  T  S  S  G  K  T  Y  T  M  S  G  I  T  E  Y  T  L  A  D  I  Y  D  H  I  C  R  :  N  V  D  R  E  F  T  L  K  F  S  A  M  E  I  Y  N  E  V  V  R  D  L  L  T  P  E  D  T  P  L  R  L  L  D  D  P  E  :  R  G  T  V  V  E  K  L  T  E  I  T  L  K  D  W  N  H  L  K  E  L  L  S  V  C  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10410" stop="10617"/>
                    <exon start="10714" stop="10803"/>
                    <exon start="10887" stop="10987"/>
                    <exon start="11091" stop="11204"/>
                    <exon start="11288" stop="11368"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEASQYGDDHGSVAHEEKEKIFVAVRLRPLNEREITCNDVSDWECINNTTIFYKNSMSERSLFPTACAYDRVFGYDCSTRQVYEEAAKGVALSVLSGINSSIFAYGQTSSGKTYTMSGITEYTLADIYDHICRNVDREFTLKFSAMEIYNEVVRDLLTPEDTPLRLLDDPERGTVVEKLTEITLKDWNHLKELLSVCE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13604" PGL_stop="14190"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13604" e_stop="13810"/>
            <exon e_start="13959" e_stop="14190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13604" e_stop="13810" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13811" i_stop="13958" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="13959" e_stop="14190" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13604" stop="13810"/>
              <exon start="13959" stop="14190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGAGCTTTCTGCTGATAATGTTAAGTTGTTATCAAAAGAACACAACCGCAGTTTTACGATTGAAGTAAAGCTCAAAATGTCAGGTGAAGACTGTGAGAAGATTTGTGCTGAGGAACCAAAAATGTCCGGTGAAGATAGCATAAAAATTTGTGCAGAGGGTGAGGTTGCCAAATCTGTGCCTGAGAAGCAATCAGGGGATAATTTG : GTCCAGGATGATGAGCACACCTCCAAGGACTTGGGAAACTTTGCCGCTGATTCCTTAAATTCAGAGAATGAATCAGAATTATCTCCTTCCAGACAGTGGATGGAATTTGAGAAACAAAGGCAAGAGATAATAGAACTATGGAATGCATGCAATGTGCCCCTTGTTCACAGAACATACTTTTTCCTACTCTTCAAAGGGGATCCAACTGACTCAGTTTACATGGAGGTGGAGC</gDNA_template>
            <first_frame> P  E  L  S  A  D  N  V  K  L  L  S  K  E  H  N  R  S  F  T  I  E  V  K  L  K  M  S  G  E  D  C  E  K  I  C  A  E  E  P  K  M  S  G  E  D  S  I  K  I  C  A  E  G  E  V  A  K  S  V  P  E  K  Q  S  G  D  N  L  :  V  Q  D  D  E  H  T  S  K  D  L  G  N  F  A  A  D  S  L  N  S  E  N  E  S  E  L  S  P  S  R  Q  W  M  E  F  E  K  Q  R  Q  E  I  I  E  L  W  N  A  C  N  V  P  L  V  H  R  T  Y  F  F  L  L  F  K  G  D  P  T  D  S  V  Y  M  E  V  E  </first_frame>
            <second_frame>  R  S  F  L  L  I  M  L  S  C  Y  Q  K  N  T  T  A  V  L  R  L  K  *  S  S  K  C  Q  V  K  T  V  R  R  F  V  L  R  N  Q  K  C  P  V  K  I  A  *  K  F  V  Q  R  V  R  L  P  N  L  C  L  R  S  N  Q  G  I  I  W :   S  R  M  M  S  T  P  P  R  T  W  E  T  L  P  L  I  P  *  I  Q  R  M  N  Q  N  Y  L  L  P  D  S  G  W  N  L  R  N  K  G  K  R  *  *  N  Y  G  M  H  A  M  C  P  L  F  T  E  H  T  F  S  Y  S  S  K  G  I  Q  L  T  Q  F  T  W  R  W  S </second_frame>
            <third_frame>   G  A  F  C  *  *  C  *  V  V  I  K  R  T  Q  P  Q  F  Y  D  *  S  K  A  Q  N  V  R  *  R  L  *  E  D  L  C  *  G  T  K  N  V  R  *  R  *  H  K  N  L  C  R  G  *  G  C  Q  I  C  A  *  E  A  I  R  G  *  F   : G  P  G  *  *  A  H  L  Q  G  L  G  K  L  C  R  *  F  L  K  F  R  E  *  I  R  I  I  S  F  Q  T  V  D  G  I  *  E  T  K  A  R  D  N  R  T  M  E  C  M  Q  C  A  P  C  S  Q  N  I  L  F  P  T  L  Q  R  G  S  N  *  L  S  L  H  G  G  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13604" stop="13810"/>
                    <exon start="13959" stop="14189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PELSADNVKLLSKEHNRSFTIEVKLKMSGEDCEKICAEEPKMSGEDSIKICAEGEVAKSVPEKQSGDNLVQDDEHTSKDLGNFAADSLNSENESELSPSRQWMEFEKQRQEIIELWNACNVPLVHRTYFFLLFKGDPTDSVYMEVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="20382" PGL_stop="18276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20382" e_stop="19813"/>
            <exon e_start="18980" e_stop="18756"/>
            <exon e_start="18324" e_stop="18276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.955" acc_prob="0.942" e_score="0.991"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="20382" e_stop="19813" e_length="570"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19812" i_stop="18981" i_length="832"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="18980" e_stop="18756" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.942">
            <gDNA_intron_boundary i_start="18755" i_stop="18325" i_length="431"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="18324" e_stop="18276" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20382" stop="19978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20380" stop="19813"/>
              <exon start="18980" stop="18756"/>
              <exon start="18324" stop="18276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGAGGCATTAACACACCTAAGCTTTGGCATTTGTACTGCACGCCTTTCACCACCATATCAACTAGCCGGCGGCGTCGGTAAGAAGCCGCCGAGACTCAATGCTGTTACCGGAGGAGCTAGTAGTGTTACCGGTGGAACAAGTAGTGTACCGACGAACTTCTCCGCCAGTAAATGGGCGGATCGTCTTCTCGCCGATTTCCAATTCCTTCCTTCCACCACCACCACCTCCGACTCATCGGATTTCCAGAATTCAACTTCTACAACCTCTGTTACGACTATTCCTCCTCCCGTTGCTCCTTCAGACCGCCACATTTCAATGCCTATAGACTTTTATAGAGTGCTTGGTGCTGAAGCTCACTTCCTCGGTGATGGTATCAGGAGATGCTACGATGCTAGAATTACTAAGCCGCCGCAGTACGGGTACAGTCAAGAGGCATTGATTGGCCGACGACAGATTCTTCAAGCTGCTTGTGAAACCCTTGCTGACTCTACCTCTCGTAGAGAATACAATCAAGGCCTCGCTCAGCATGAGTTCGATACTATTCTAACTCCGGTCCCCTGGGATAAA : GTTCCGGGAGCATTGTGTGTTTTGCAAGAAGCTGGTGAGACTGGAGTAGTTCTTCAGATTGGGGAAAGCTTGCTGAAAGAGCGGTTGCCAAAGTCATTCAAGCAAGATGTGGTCTTAGCTATGGCACTCGCATATGTTGACCATTCGCGAGATGCGATGGCACTTTCGCCTCCTGATTTTGTTCAAGGTTGTGAACTGCTTGAAAGAGCACTTAAGCTGTTGCAG : GAAGAAGGTGCAAGTAATCTTGCCCTTGATCTGCAATCCCAGATAGATG</gDNA_template>
            <first_frame> M  E  A  L  T  H  L  S  F  G  I  C  T  A  R  L  S  P  P  Y  Q  L  A  G  G  V  G  K  K  P  P  R  L  N  A  V  T  G  G  A  S  S  V  T  G  G  T  S  S  V  P  T  N  F  S  A  S  K  W  A  D  R  L  L  A  D  F  Q  F  L  P  S  T  T  T  T  S  D  S  S  D  F  Q  N  S  T  S  T  T  S  V  T  T  I  P  P  P  V  A  P  S  D  R  H  I  S  M  P  I  D  F  Y  R  V  L  G  A  E  A  H  F  L  G  D  G  I  R  R  C  Y  D  A  R  I  T  K  P  P  Q  Y  G  Y  S  Q  E  A  L  I  G  R  R  Q  I  L  Q  A  A  C  E  T  L  A  D  S  T  S  R  R  E  Y  N  Q  G  L  A  Q  H  E  F  D  T  I  L  T  P  V  P  W  D  K  :  V  P  G  A  L  C  V  L  Q  E  A  G  E  T  G  V  V  L  Q  I  G  E  S  L  L  K  E  R  L  P  K  S  F  K  Q  D  V  V  L  A  M  A  L  A  Y  V  D  H  S  R  D  A  M  A  L  S  P  P  D  F  V  Q  G  C  E  L  L  E  R  A  L  K  L  L  Q  :  E  E  G  A  S  N  L  A  L  D  L  Q  S  Q  I  D  </first_frame>
            <second_frame>  W  R  H  *  H  T  *  A  L  A  F  V  L  H  A  F  H  H  H  I  N  *  P  A  A  S  V  R  S  R  R  D  S  M  L  L  P  E  E  L  V  V  L  P  V  E  Q  V  V  Y  R  R  T  S  P  P  V  N  G  R  I  V  F  S  P  I  S  N  S  F  L  P  P  P  P  P  P  T  H  R  I  S  R  I  Q  L  L  Q  P  L  L  R  L  F  L  L  P  L  L  L  Q  T  A  T  F  Q  C  L  *  T  F  I  E  C  L  V  L  K  L  T  S  S  V  M  V  S  G  D  A  T  M  L  E  L  L  S  R  R  S  T  G  T  V  K  R  H  *  L  A  D  D  R  F  F  K  L  L  V  K  P  L  L  T  L  P  L  V  E  N  T  I  K  A  S  L  S  M  S  S  I  L  F  *  L  R  S  P  G  I  K :   F  R  E  H  C  V  F  C  K  K  L  V  R  L  E  *  F  F  R  L  G  K  A  C  *  K  S  G  C  Q  S  H  S  S  K  M  W  S  *  L  W  H  S  H  M  L  T  I  R  E  M  R  W  H  F  R  L  L  I  L  F  K  V  V  N  C  L  K  E  H  L  S  C  C  R :   K  K  V  Q  V  I  L  P  L  I  C  N  P  R  *  M </second_frame>
            <third_frame>   G  G  I  N  T  P  K  L  W  H  L  Y  C  T  P  F  T  T  I  S  T  S  R  R  R  R  *  E  A  A  E  T  Q  C  C  Y  R  R  S  *  *  C  Y  R  W  N  K  *  C  T  D  E  L  L  R  Q  *  M  G  G  S  S  S  R  R  F  P  I  P  S  F  H  H  H  H  L  R  L  I  G  F  P  E  F  N  F  Y  N  L  C  Y  D  Y  S  S  S  R  C  S  F  R  P  P  H  F  N  A  Y  R  L  L  *  S  A  W  C  *  S  S  L  P  R  *  W  Y  Q  E  M  L  R  C  *  N  Y  *  A  A  A  V  R  V  Q  S  R  G  I  D  W  P  T  T  D  S  S  S  C  L  *  N  P  C  *  L  Y  L  S  *  R  I  Q  S  R  P  R  S  A  *  V  R  Y  Y  S  N  S  G  P  L  G  *   : S  S  G  S  I  V  C  F  A  R  S  W  *  D  W  S  S  S  S  D  W  G  K  L  A  E  R  A  V  A  K  V  I  Q  A  R  C  G  L  S  Y  G  T  R  I  C  *  P  F  A  R  C  D  G  T  F  A  S  *  F  C  S  R  L  *  T  A  *  K  S  T  *  A  V  A   : G  R  R  C  K  *  S  C  P  *  S  A  I  P  D  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20382" stop="19813"/>
                    <exon start="18980" stop="18756"/>
                    <exon start="18324" stop="18277"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEALTHLSFGICTARLSPPYQLAGGVGKKPPRLNAVTGGASSVTGGTSSVPTNFSASKWADRLLADFQFLPSTTTTSDSSDFQNSTSTTSVTTIPPPVAPSDRHISMPIDFYRVLGAEAHFLGDGIRRCYDARITKPPQYGYSQEALIGRRQILQAACETLADSTSRREYNQGLAQHEFDTILTPVPWDKVPGALCVLQEAGETGVVLQIGESLLKERLPKSFKQDVVLAMALAYVDHSRDAMALSPPDFVQGCELLERALKLLQEEGASNLALDLQSQID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36354" PGL_stop="34227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36354" e_stop="36196"/>
            <exon e_start="36106" e_stop="35821"/>
            <exon e_start="34655" e_stop="34227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36354" e_stop="36196" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36195" i_stop="36107" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36106" e_stop="35821" e_length="286"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="35820" i_stop="34656" i_length="1165"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="34655" e_stop="34227" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36354" stop="36196"/>
              <exon start="36106" stop="35982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398057" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36346" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36338" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36326" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36326" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36325" stop="36196"/>
              <exon start="36106" stop="36022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36324" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36324" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36324" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36324" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36323" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36322" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36322" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36321" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36321" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36319" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36319" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36319" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36315" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36314" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36314" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36313" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36313" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36311" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36311" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36311" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36310" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36306" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36305" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36223" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36196" stop="36196"/>
              <exon start="36106" stop="35821"/>
              <exon start="34655" stop="34234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36101" stop="35821"/>
              <exon start="34655" stop="34315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262312" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36032" stop="35821"/>
              <exon start="34655" stop="34256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36032" stop="35821"/>
              <exon start="34655" stop="34256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36026" stop="35821"/>
              <exon start="34655" stop="34275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36009" stop="35821"/>
              <exon start="34655" stop="34278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36001" stop="35821"/>
              <exon start="34655" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35996" stop="35821"/>
              <exon start="34655" stop="34355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35996" stop="35821"/>
              <exon start="34655" stop="34355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35940" stop="35821"/>
              <exon start="34655" stop="34319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35899" stop="35821"/>
              <exon start="34655" stop="34286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35899" stop="35821"/>
              <exon start="34655" stop="34286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35899" stop="35821"/>
              <exon start="34655" stop="34286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35889" stop="35821"/>
              <exon start="34655" stop="34287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35881" stop="35821"/>
              <exon start="34655" stop="34274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGATCAATCAATCAATCGATTCCAATAAACACTCAGATCGCAAATCACTTCAATTTCCCAATTCGAAGAAGATAAAAATGGCTTCTACGTTTAGCGGCGATGAAACGGCACCGTTTTTTGGCTTCCTCGGCGCTGCAGCTGCCTTAGTCTTCTCCT : GTATGGGTGCAGCTTATGGTACAGCGAAGAGTGGGGTAGGAGTAGCGTCGATGGGTGTAATGAGGCCGGAATTGGTAATGAAGTCAATTGTTCCAGTTGTTATGGCTGGAGTTTTGGGTATTTATGGGTTAATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAAACTAAGTCGTATTATCTATTTGATGGATATGCTCACCTCTCATCTGGTCTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGTATGGCTATCGGAATCGTTGGTGATGCTGGTGTTAG : AGCTAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATCCTTATTTTTGCTGAAGCCTTGGCTCTTTACGGCCTTATTGTCGGTATCATCCTTTCTTCTCGCGCTGGTCAATCTAGAGCAGAGTAGAGAAAGAGTGCCACCTGTTCCGTAATTGTGAAGTATCTTTGTGTTCTTCCTCGTTTGATGAGCTAGTTTGGCTGTTAAATTACATTTTGTTTAGTTTTGGCCTTCGTGATTATGTATTTGATTGCTTGGCAAAGAAGATTCCCTCAATAAAGATATCAAACTTTTCGGATATTTTTGAAAGACAAATAATTGAATTGCTGTAAAATGTTCCTTGTATTAACTTTACTTTAAGCTTTCATTTGTTTCTGTATATCTTTTCCATTTTACATCTACTGATTTCTGCTACTTAGACCTTG</gDNA_template>
            <first_frame> F  R  S  I  N  Q  S  I  P  I  N  T  Q  I  A  N  H  F  N  F  P  I  R  R  R  *  K  W  L  L  R  L  A  A  M  K  R  H  R  F  L  A  S  S  A  L  Q  L  P  *  S  S  P  :  V  W  V  Q  L  M  V  Q  R  R  V  G  *  E  *  R  R  W  V  *  *  G  R  N  W  *  *  S  Q  L  F  Q  L  L  W  L  E  F  W  V  F  M  G  *  L  L  L  *  L  L  V  L  G  L  T  R  K  L  S  R  I  I  Y  L  M  D  M  L  T  S  H  L  V  L  L  V  D  L  L  V  F  L  L  V  W  L  S  E  S  L  V  M  L  V  L   : E  L  M  H  S  S  Q  S  F  L  L  E  *  F  *  S  L  F  L  L  K  P  W  L  F  T  A  L  L  S  V  S  S  F  L  L  A  L  V  N  L  E  Q  S  R  E  R  V  P  P  V  P  *  L  *  S  I  F  V  F  F  L  V  *  *  A  S  L  A  V  K  L  H  F  V  *  F  W  P  S  *  L  C  I  *  L  L  G  K  E  D  S  L  N  K  D  I  K  L  F  G  Y  F  *  K  T  N  N  *  I  A  V  K  C  S  L  Y  *  L  Y  F  K  L  S  F  V  S  V  Y  L  F  H  F  T  S  T  D  F  C  Y  L  D  L  </first_frame>
            <second_frame>  L  D  Q  S  I  N  R  F  Q  *  T  L  R  S  Q  I  T  S  I  S  Q  F  E  E  D  K  N  G  F  Y  V  *  R  R  *  N  G  T  V  F  W  L  P  R  R  C  S  C  L  S  L  L  L :   Y  G  C  S  L  W  Y  S  E  E  W  G  R  S  S  V  D  G  C  N  E  A  G  I  G  N  E  V  N  C  S  S  C  Y  G  W  S  F  G  Y  L  W  V  N  Y  C  C  D  Y  *  Y  W  D  *  P  E  N  *  V  V  L  S  I  *  W  I  C  S  P  L  I  W  S  C  L  W  T  C  W  S  F  C  W  Y  G  Y  R  N  R  W  *  C  W  C  *  :  S  *  C  T  A  A  K  A  F  C  W  N  D  S  D  P  Y  F  C  *  S  L  G  S  L  R  P  Y  C  R  Y  H  P  F  F  S  R  W  S  I  *  S  R  V  E  K  E  C  H  L  F  R  N  C  E  V  S  L  C  S  S  S  F  D  E  L  V  W  L  L  N  Y  I  L  F  S  F  G  L  R  D  Y  V  F  D  C  L  A  K  K  I  P  S  I  K  I  S  N  F  S  D  I  F  E  R  Q  I  I  E  L  L  *  N  V  P  C  I  N  F  T  L  S  F  H  L  F  L  Y  I  F  S  I  L  H  L  L  I  S  A  T  *  T  L </second_frame>
            <third_frame>   *  I  N  Q  S  I  D  S  N  K  H  S  D  R  K  S  L  Q  F  P  N  S  K  K  I  K  M  A  S  T  F  S  G  D  E  T  A  P  F  F  G  F  L  G  A  A  A  A  L  V  F  S   : C  M  G  A  A  Y  G  T  A  K  S  G  V  G  V  A  S  M  G  V  M  R  P  E  L  V  M  K  S  I  V  P  V  V  M  A  G  V  L  G  I  Y  G  L  I  I  A  V  I  I  S  T  G  I  N  P  K  T  K  S  Y  Y  L  F  D  G  Y  A  H  L  S  S  G  L  A  C  G  L  A  G  L  S  A  G  M  A  I  G  I  V  G  D  A  G  V  R :   A  N  A  Q  Q  P  K  L  F  V  G  M  I  L  I  L  I  F  A  E  A  L  A  L  Y  G  L  I  V  G  I  I  L  S  S  R  A  G  Q  S  R  A  E  *  R  K  S  A  T  C  S  V  I  V  K  Y  L  C  V  L  P  R  L  M  S  *  F  G  C  *  I  T  F  C  L  V  L  A  F  V  I  M  Y  L  I  A  W  Q  R  R  F  P  Q  *  R  Y  Q  T  F  R  I  F  L  K  D  K  *  L  N  C  C  K  M  F  L  V  L  T  L  L  *  A  F  I  C  F  C  I  S  F  P  F  Y  I  Y  *  F  L  L  L  R  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36349" stop="36196"/>
                    <exon start="36106" stop="35821"/>
                    <exon start="34655" stop="34523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INQSIDSNKHSDRKSLQFPNSKKIKMASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34532" stop="34320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVEKECHLFRNCEVSLCSSSFDELVWLLNYILFSFGLRDYVFDCLAKKIPSIKISNFSDIFERQIIELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="38570" PGL_stop="38094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38570" e_stop="38094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="38570" e_stop="38094" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38570" stop="38094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAGCGGAGAGCTGAGAGACTACTTGGCAGCAGGAGGAGAGCCTTCTCTTTGGATGACTTGCTAATTCCAGTCCTTACAGGTTGTGATTTCACTCGGCCTTCCTATTTACTTTTGAGGGCCTGCTTTTATTTTGGTCTTACCAATTAAAAATTGTGGTCATTTTTCCTCCTATTGTCTCACCCTCTGTTTCTCTTAAGATTTCAATGAGATGGGTCTATCCATCAGGCTAGTAGTATACCCTCGGTTTGAGGTTGGTGAAATTTGATGGTATACAGTTCTGCAGAAACATATAACTTCTCATATTGAACATCTTGGAATGAGTACCGGTACCGGCAGTATGTGTACTACTGGCAGTAGATAAAGATGAAAATATCAGCTATGTTGTTCAGTGCAGAATGATGTTGAATTGGGGAAGAAGTTCTTGATTGGATTGCTAACGTCCAATCAAAATCTCTCGTTTTCCTCATGTTCAATG</gDNA_template>
            <first_frame> Y  S  G  E  L  R  D  Y  L  A  A  G  G  E  P  S  L  W  M  T  C  *  F  Q  S  L  Q  V  V  I  S  L  G  L  P  I  Y  F  *  G  P  A  F  I  L  V  L  P  I  K  N  C  G  H  F  S  S  Y  C  L  T  L  C  F  S  *  D  F  N  E  M  G  L  S  I  R  L  V  V  Y  P  R  F  E  V  G  E  I  *  W  Y  T  V  L  Q  K  H  I  T  S  H  I  E  H  L  G  M  S  T  G  T  G  S  M  C  T  T  G  S  R  *  R  *  K  Y  Q  L  C  C  S  V  Q  N  D  V  E  L  G  K  K  F  L  I  G  L  L  T  S  N  Q  N  L  S  F  S  S  C  S  M </first_frame>
            <second_frame>  I  A  E  S  *  E  T  T  W  Q  Q  E  E  S  L  L  F  G  *  L  A  N  S  S  P  Y  R  L  *  F  H  S  A  F  L  F  T  F  E  G  L  L  L  F  W  S  Y  Q  L  K  I  V  V  I  F  P  P  I  V  S  P  S  V  S  L  K  I  S  M  R  W  V  Y  P  S  G  *  *  Y  T  L  G  L  R  L  V  K  F  D  G  I  Q  F  C  R  N  I  *  L  L  I  L  N  I  L  E  *  V  P  V  P  A  V  C  V  L  L  A  V  D  K  D  E  N  I  S  Y  V  V  Q  C  R  M  M  L  N  W  G  R  S  S  *  L  D  C  *  R  P  I  K  I  S  R  F  P  H  V  Q   </second_frame>
            <third_frame>   *  R  R  A  E  R  L  L  G  S  R  R  R  A  F  S  L  D  D  L  L  I  P  V  L  T  G  C  D  F  T  R  P  S  Y  L  L  L  R  A  C  F  Y  F  G  L  T  N  *  K  L  W  S  F  F  L  L  L  S  H  P  L  F  L  L  R  F  Q  *  D  G  S  I  H  Q  A  S  S  I  P  S  V  *  G  W  *  N  L  M  V  Y  S  S  A  E  T  Y  N  F  S  Y  *  T  S  W  N  E  Y  R  Y  R  Q  Y  V  Y  Y  W  Q  *  I  K  M  K  I  S  A  M  L  F  S  A  E  *  C  *  I  G  E  E  V  L  D  W  I  A  N  V  Q  S  K  S  L  V  F  L  M  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="41600" PGL_stop="39042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41600" e_stop="41299"/>
            <exon e_start="41173" e_stop="41099"/>
            <exon e_start="39694" e_stop="39042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="41600" e_stop="41299" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41298" i_stop="41174" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41173" e_stop="41099" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41098" i_stop="39695" i_length="1404"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39694" e_stop="39042" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41600" stop="41299"/>
              <exon start="41173" stop="41099"/>
              <exon start="39694" stop="39083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41471" stop="41299"/>
              <exon start="41173" stop="41099"/>
              <exon start="39694" stop="39334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41444" stop="41299"/>
              <exon start="41173" stop="41099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41365" stop="41299"/>
              <exon start="41173" stop="41099"/>
              <exon start="39694" stop="39540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39623" stop="39042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAATGTCAAGCAGCTGCTGCTAATTCAGATTTCTATGATCCAGTGATGCATGTCACTGATGAAGAGGATTCAAACGTGAGTTCCAAAATGGATATGAGAAAGCATGATGTGTTAGTGTGTGAAAGCTCTGCCTCACAAATTACTGTAAATAAAGAGGCATTAGATAATCAACCGAGAGGAGCAAAAAGAATTAAGCAGGCTGTTGTAGATTATGTTGCGTCTTTGCTGATGCCTCTTTATAAAGCAAGGAAACTCGACAGGGATGGGTATAAATCCATAATGAAGAAAACTGCTACAAAG : GTAATGGAACATGCCACAGATGCTAAAAAGGCCATGCATGTGTACGAGTTTCTTGATTTCAAACGTAAAAACAAG : ATTAGAGATTTCGTGGACAAGTTGGTTGAAAGGCATATTCAGATGAATCCGGGTGCAAAATCATAATGGACAAAGGATGAGCAGTCACTCTTATTGATGCTTTACGGCAGGGTGATTAGTCTCATCAACTTTTTCACGAGTGGGTGCAACAATCATGGACGAGTGAGGAATGCAGGCTTCATTGAACAATTATCCTTGCCAAGCTAGTTATCGTCTTCAGAGACTCTTTTGTTGAATGTATCATGGACTGTTTATTGTAAGAGACTGATTAATTGTCCTGCAAATTTGAGACTTTTGACATTTCTGTTGCGGTGTCTGCAAGAAACAATCTCAAGGTGATAAAGTCGGTGAAAACATGTCTGTCATGTGAATGTTATACTACTACTACTCCTGCTGACTGACGTGAATTCCTTAAGAGATAGCAAGATTAGGTTTAGAATTGGTAGTCAGATTTGAAGTTGTATTATATAGAAGAAAAGTAGCCCTTTGTTTCTTTCAGTTCAGGGTTCCCCTTTGATGAACAATCACTTCTGACTTTTCTTTAGTTTTGGTATGTGTACAGCTCAGGATTGTTATCATTGGAACAAATATACAGAACATTTTGAGGGCGTCATATGCTTCCTTCATTTTGAAATATTGATTTCTCAGAATAA</gDNA_template>
            <first_frame> G  N  V  K  Q  L  L  L  I  Q  I  S  M  I  Q  *  C  M  S  L  M  K  R  I  Q  T  *  V  P  K  W  I  *  E  S  M  M  C  *  C  V  K  A  L  P  H  K  L  L  *  I  K  R  H  *  I  I  N  R  E  E  Q  K  E  L  S  R  L  L  *  I  M  L  R  L  C  *  C  L  F  I  K  Q  G  N  S  T  G  M  G  I  N  P  *  *  R  K  L  L  Q  R :   *  W  N  M  P  Q  M  L  K  R  P  C  M  C  T  S  F  L  I  S  N  V  K  T  R :   L  E  I  S  W  T  S  W  L  K  G  I  F  R  *  I  R  V  Q  N  H  N  G  Q  R  M  S  S  H  S  Y  *  C  F  T  A  G  *  L  V  S  S  T  F  S  R  V  G  A  T  I  M  D  E  *  G  M  Q  A  S  L  N  N  Y  P  C  Q  A  S  Y  R  L  Q  R  L  F  C  *  M  Y  H  G  L  F  I  V  R  D  *  L  I  V  L  Q  I  *  D  F  *  H  F  C  C  G  V  C  K  K  Q  S  Q  G  D  K  V  G  E  N  M  S  V  M  *  M  L  Y  Y  Y  Y  S  C  *  L  T  *  I  P  *  E  I  A  R  L  G  L  E  L  V  V  R  F  E  V  V  L  Y  R  R  K  V  A  L  C  F  F  Q  F  R  V  P  L  *  *  T  I  T  S  D  F  S  L  V  L  V  C  V  Q  L  R  I  V  I  I  G  T  N  I  Q  N  I  L  R  A  S  Y  A  S  F  I  L  K  Y  *  F  L  R  I  </first_frame>
            <second_frame>  A  M  S  S  S  C  C  *  F  R  F  L  *  S  S  D  A  C  H  *  *  R  G  F  K  R  E  F  Q  N  G  Y  E  K  A  *  C  V  S  V  *  K  L  C  L  T  N  Y  C  K  *  R  G  I  R  *  S  T  E  R  S  K  K  N  *  A  G  C  C  R  L  C  C  V  F  A  D  A  S  L  *  S  K  E  T  R  Q  G  W  V  *  I  H  N  E  E  N  C  Y  K   : G  N  G  T  C  H  R  C  *  K  G  H  A  C  V  R  V  S  *  F  Q  T  *  K  Q   : D  *  R  F  R  G  Q  V  G  *  K  A  Y  S  D  E  S  G  C  K  I  I  M  D  K  G  *  A  V  T  L  I  D  A  L  R  Q  G  D  *  S  H  Q  L  F  H  E  W  V  Q  Q  S  W  T  S  E  E  C  R  L  H  *  T  I  I  L  A  K  L  V  I  V  F  R  D  S  F  V  E  C  I  M  D  C  L  L  *  E  T  D  *  L  S  C  K  F  E  T  F  D  I  S  V  A  V  S  A  R  N  N  L  K  V  I  K  S  V  K  T  C  L  S  C  E  C  Y  T  T  T  T  P  A  D  *  R  E  F  L  K  R  *  Q  D  *  V  *  N  W  *  S  D  L  K  L  Y  Y  I  E  E  K  *  P  F  V  S  F  S  S  G  F  P  F  D  E  Q  S  L  L  T  F  L  *  F  W  Y  V  Y  S  S  G  L  L  S  L  E  Q  I  Y  R  T  F  *  G  R  H  M  L  P  S  F  *  N  I  D  F  S  E  * </second_frame>
            <third_frame>   Q  C  Q  A  A  A  A  N  S  D  F  Y  D  P  V  M  H  V  T  D  E  E  D  S  N  V  S  S  K  M  D  M  R  K  H  D  V  L  V  C  E  S  S  A  S  Q  I  T  V  N  K  E  A  L  D  N  Q  P  R  G  A  K  R  I  K  Q  A  V  V  D  Y  V  A  S  L  L  M  P  L  Y  K  A  R  K  L  D  R  D  G  Y  K  S  I  M  K  K  T  A  T  K  :  V  M  E  H  A  T  D  A  K  K  A  M  H  V  Y  E  F  L  D  F  K  R  K  N  K  :  I  R  D  F  V  D  K  L  V  E  R  H  I  Q  M  N  P  G  A  K  S  *  W  T  K  D  E  Q  S  L  L  L  M  L  Y  G  R  V  I  S  L  I  N  F  F  T  S  G  C  N  N  H  G  R  V  R  N  A  G  F  I  E  Q  L  S  L  P  S  *  L  S  S  S  E  T  L  L  L  N  V  S  W  T  V  Y  C  K  R  L  I  N  C  P  A  N  L  R  L  L  T  F  L  L  R  C  L  Q  E  T  I  S  R  *  *  S  R  *  K  H  V  C  H  V  N  V  I  L  L  L  L  L  L  T  D  V  N  S  L  R  D  S  K  I  R  F  R  I  G  S  Q  I  *  S  C  I  I  *  K  K  S  S  P  L  F  L  S  V  Q  G  S  P  L  M  N  N  H  F  *  L  F  F  S  F  G  M  C  T  A  Q  D  C  Y  H  W  N  K  Y  T  E  H  F  E  G  V  I  C  F  L  H  F  E  I  L  I  S  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41598" stop="41299"/>
                    <exon start="41173" stop="41099"/>
                    <exon start="39694" stop="39629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QCQAAAANSDFYDPVMHVTDEEDSNVSSKMDMRKHDVLVCESSASQITVNKEALDNQPRGAKRIKQAVVDYVASLLMPLYKARKLDRDGYKSIMKKTATKVMEHATDAKKAMHVYEFLDFKRKNKIRDFVDKLVERHIQMNPGAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="43725" PGL_stop="41698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43725" e_stop="43546"/>
            <exon e_start="43460" e_stop="43367"/>
            <exon e_start="42981" e_stop="42503"/>
            <exon e_start="42015" e_stop="41698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.977"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="43725" e_stop="43546" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43545" i_stop="43461" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="43460" e_stop="43367" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43366" i_stop="42982" i_length="385"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="42981" e_stop="42503" e_length="479"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42502" i_stop="42016" i_length="487"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42015" e_stop="41698" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43725" stop="43546"/>
              <exon start="43460" stop="43367"/>
              <exon start="42981" stop="42509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42717" stop="42503"/>
              <exon start="42015" stop="41698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTGGATGGGGTGAAGATCGTGACCCGGGAGAATTTGCTAAGGGACATGTTCTGTAAGGCCAATACAACAGCAGGAAGATTGCATCTCGCAAAAGAATTGTTGAAACTTCCGGTAGAAGTTTTGAGATCTTTTGCTGGAACTAAAGAAGGGCTTAGCACACTTAATTTGTGGATGCTG : GACTCCATGGGAAAGGATGGGACCCAACTCTTGCGCCATTGTGTTCGTTTACTAGTACTTGTTTCAACTGATTTGCTTGCAGTCCGGCTGTCAG : GTATTGGGAAAACGGTTAAAGAAAAAGTCTGTGTGCATACTAGCCGTGACATACGTGCTGTAGCAAGTCAGCTTGTCAATGTATGGATAGAACTTTTTCGAAAGGAGAAGGCTGCTAATGGTGGTCTGAAATTACTAAGACAATCCACTGCCACTGATACTTCGAAGAGCAAACACATTGCAGCACCTGGCAAACCTCCTATCCGCAGTCATCCTTCAGCAGTAGACAGTAAACGGAGTTCTAAAGTTTCTTCATCGGCTGGAAATCACTTAGCTGTTAGTGTCAACAACAAGAAGCTGAATGTCAGGCCAGCCACGATAGGAGCTATTCCAGTTGTTGAACCGTCAACCTCTCAAGCTTCAGTAGGAAGGCAAAATGATACCAGTGAGGAAACACAAAATTTTCCCATGTCTGAGGAAGAGAAGGCTGCGTTTGCTGCTGCAGAAGCTGCTCGCCTTGCTGCTCTAGCAGCTGCTGAG : GCCTATGCTTCATCTGGTGCCAAGTGTAACATGCCACTGCAGCTTCCTAAGATACCCTCATTTCACAAATTTGCTCGACGGGAACAATATGCAAATATGGATGAGTCTGACATCAGAAAGAATTGGCCTGGCGGTGTGGTAGGAAGGCAAGATTGTTTATCCGAAATTGATTCTCGCAATTGCCGGGTGAGGGATTGGTCTGTTGATTTTTCTGCTGCTGGTGTGAACCTTGACAGTTCAAAAATGTCTGTTGATAATCGCTCACAGCGTAGCCTCTCAAATGACAATGCAAGTCAGCTTAACTATAAGGAGCACTCT</gDNA_template>
            <first_frame> S  L  D  G  V  K  I  V  T  R  E  N  L  L  R  D  M  F  C  K  A  N  T  T  A  G  R  L  H  L  A  K  E  L  L  K  L  P  V  E  V  L  R  S  F  A  G  T  K  E  G  L  S  T  L  N  L  W  M  L  :  D  S  M  G  K  D  G  T  Q  L  L  R  H  C  V  R  L  L  V  L  V  S  T  D  L  L  A  V  R  L  S   : G  I  G  K  T  V  K  E  K  V  C  V  H  T  S  R  D  I  R  A  V  A  S  Q  L  V  N  V  W  I  E  L  F  R  K  E  K  A  A  N  G  G  L  K  L  L  R  Q  S  T  A  T  D  T  S  K  S  K  H  I  A  A  P  G  K  P  P  I  R  S  H  P  S  A  V  D  S  K  R  S  S  K  V  S  S  S  A  G  N  H  L  A  V  S  V  N  N  K  K  L  N  V  R  P  A  T  I  G  A  I  P  V  V  E  P  S  T  S  Q  A  S  V  G  R  Q  N  D  T  S  E  E  T  Q  N  F  P  M  S  E  E  E  K  A  A  F  A  A  A  E  A  A  R  L  A  A  L  A  A  A  E  :  A  Y  A  S  S  G  A  K  C  N  M  P  L  Q  L  P  K  I  P  S  F  H  K  F  A  R  R  E  Q  Y  A  N  M  D  E  S  D  I  R  K  N  W  P  G  G  V  V  G  R  Q  D  C  L  S  E  I  D  S  R  N  C  R  V  R  D  W  S  V  D  F  S  A  A  G  V  N  L  D  S  S  K  M  S  V  D  N  R  S  Q  R  S  L  S  N  D  N  A  S  Q  L  N  Y  K  E  H  S </first_frame>
            <second_frame>  L  W  M  G  *  R  S  *  P  G  R  I  C  *  G  T  C  S  V  R  P  I  Q  Q  Q  E  D  C  I  S  Q  K  N  C  *  N  F  R  *  K  F  *  D  L  L  L  E  L  K  K  G  L  A  H  L  I  C  G  C  W :   T  P  W  E  R  M  G  P  N  S  C  A  I  V  F  V  Y  *  Y  L  F  Q  L  I  C  L  Q  S  G  C  Q  :  V  L  G  K  R  L  K  K  K  S  V  C  I  L  A  V  T  Y  V  L  *  Q  V  S  L  S  M  Y  G  *  N  F  F  E  R  R  R  L  L  M  V  V  *  N  Y  *  D  N  P  L  P  L  I  L  R  R  A  N  T  L  Q  H  L  A  N  L  L  S  A  V  I  L  Q  Q  *  T  V  N  G  V  L  K  F  L  H  R  L  E  I  T  *  L  L  V  S  T  T  R  S  *  M  S  G  Q  P  R  *  E  L  F  Q  L  L  N  R  Q  P  L  K  L  Q  *  E  G  K  M  I  P  V  R  K  H  K  I  F  P  C  L  R  K  R  R  L  R  L  L  L  Q  K  L  L  A  L  L  L  *  Q  L  L  R :   P  M  L  H  L  V  P  S  V  T  C  H  C  S  F  L  R  Y  P  H  F  T  N  L  L  D  G  N  N  M  Q  I  W  M  S  L  T  S  E  R  I  G  L  A  V  W  *  E  G  K  I  V  Y  P  K  L  I  L  A  I  A  G  *  G  I  G  L  L  I  F  L  L  L  V  *  T  L  T  V  Q  K  C  L  L  I  I  A  H  S  V  A  S  Q  M  T  M  Q  V  S  L  T  I  R  S  T   </second_frame>
            <third_frame>   F  G  W  G  E  D  R  D  P  G  E  F  A  K  G  H  V  L  *  G  Q  Y  N  S  R  K  I  A  S  R  K  R  I  V  E  T  S  G  R  S  F  E  I  F  C  W  N  *  R  R  A  *  H  T  *  F  V  D  A   : G  L  H  G  K  G  W  D  P  T  L  A  P  L  C  S  F  T  S  T  C  F  N  *  F  A  C  S  P  A  V  R :   Y  W  E  N  G  *  R  K  S  L  C  A  Y  *  P  *  H  T  C  C  S  K  S  A  C  Q  C  M  D  R  T  F  S  K  G  E  G  C  *  W  W  S  E  I  T  K  T  I  H  C  H  *  Y  F  E  E  Q  T  H  C  S  T  W  Q  T  S  Y  P  Q  S  S  F  S  S  R  Q  *  T  E  F  *  S  F  F  I  G  W  K  S  L  S  C  *  C  Q  Q  Q  E  A  E  C  Q  A  S  H  D  R  S  Y  S  S  C  *  T  V  N  L  S  S  F  S  R  K  A  K  *  Y  Q  *  G  N  T  K  F  S  H  V  *  G  R  E  G  C  V  C  C  C  R  S  C  S  P  C  C  S  S  S  C  *   : G  L  C  F  I  W  C  Q  V  *  H  A  T  A  A  S  *  D  T  L  I  S  Q  I  C  S  T  G  T  I  C  K  Y  G  *  V  *  H  Q  K  E  L  A  W  R  C  G  R  K  A  R  L  F  I  R  N  *  F  S  Q  L  P  G  E  G  L  V  C  *  F  F  C  C  W  C  E  P  *  Q  F  K  N  V  C  *  *  S  L  T  A  *  P  L  K  *  Q  C  K  S  A  *  L  *  G  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43725" stop="43546"/>
                    <exon start="43460" stop="43367"/>
                    <exon start="42981" stop="42503"/>
                    <exon start="42015" stop="41698"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLDGVKIVTRENLLRDMFCKANTTAGRLHLAKELLKLPVEVLRSFAGTKEGLSTLNLWMLDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAVASQLVNVWIELFRKEKAANGGLKLLRQSTATDTSKSKHIAAPGKPPIRSHPSAVDSKRSSKVSSSAGNHLAVSVNNKKLNVRPATIGAIPVVEPSTSQASVGRQNDTSEETQNFPMSEEEKAAFAAAEAARLAALAAAEAYASSGAKCNMPLQLPKIPSFHKFARREQYANMDESDIRKNWPGGVVGRQDCLSEIDSRNCRVRDWSVDFSAAGVNLDSSKMSVDNRSQRSLSNDNASQLNYKEHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="74538" PGL_stop="72116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74360" e_stop="74277"/>
            <exon e_start="73631" e_stop="73555"/>
            <exon e_start="73451" e_stop="73361"/>
            <exon e_start="72874" e_stop="72442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.989"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="74360" e_stop="74277" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73631" e_stop="73555" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="73451" e_stop="73361" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="72874" e_stop="72442" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74360" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74360" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72722" stop="72442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG : GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG : TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAG : ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAACATACATGACCAACAAC</gDNA_template>
            <first_frame> D  C  E  E  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  :  A  A  R  K  S  A  P  T  T  G  G  V  K  K  P  H  R  Y  R  P  G  T  V  A  L  R :   E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  :  T  D  L  R  F  Q  S  H  A  V  L  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  A  V  Q  D  A  D  *  S  I  S  F  W  L  F  V  Y  V  F  S  L  N  V  P  K  L  V  Y  L  L  F  V  P  G  C  T  S  V  D  A  Y  L  K  D  L  I  V  L  L  N  T  L  I  N  M  N  S  *  F  *  L  C  C  L  Y  G  S  F  D  I  T  L  D  F  K  S  K  Y  S  T  *  I  N  I  H  D  Q  Q  </first_frame>
            <second_frame>  I  V  K  K  W  L  V  L  S  R  Q  L  V  N  Q  P  V  E  R  L  Q  G  S  N  L  L  Q  R :   L  Q  G  S  Q  P  L  P  Q  E  E  *  R  S  L  I  V  T  D  L  E  L  L  L  S   : V  K  S  E  N  I  K  R  A  L  S  F  S  S  G  S  C  H  S  K  G  L  S  V  K  L  L  R  I  L  R :   Q  I  *  G  F  K  V  M  L  C  L  H  S  K  K  P  L  K  R  I  *  L  V  S  L  R  T  P  T  C  V  P  S  M  L  R  E  S  P  *  C  P  R  I  F  N  L  Q  D  V  F  V  E  N  E  L  K  L  F  K  M  L  I  N  Q  S  L  F  G  Y  S  C  M  F  L  A  L  T  Y  R  N  *  Y  I  F  C  L  C  L  D  V  H  Q  W  M  H  I  *  R  T  L  L  C  C  S  I  H  *  L  I  *  T  A  D  F  D  Y  V  V  C  M  V  L  L  I  *  L  S  I  S  S  R  N  I  Q  H  K  *  T  Y  M  T  N  N </second_frame>
            <third_frame>   L  *  R  N  G  S  Y  *  A  D  S  S  *  I  N  R  W  K  G  S  K  E  A  T  C  Y  K   : G  C  K  E  V  S  P  Y  H  R  R  S  E  E  A  S  S  L  P  T  W  N  C  C  S  P  :  *  N  P  K  I  S  K  E  H  *  A  S  H  P  E  V  A  I  P  K  A  C  P  *  N  C  S  G  F  *   : D  R  S  E  V  S  K  S  C  C  A  C  T  P  R  S  R  *  S  V  F  S  W  S  L  *  G  H  Q  L  V  C  H  P  C  *  E  S  H  H  N  A  Q  G  Y  S  T  C  K  T  Y  S  W  R  T  S  L  S  C  S  R  C  *  L  I  N  L  F  L  V  I  R  V  C  F  *  P  *  R  T  E  T  S  I  S  F  V  C  A  W  M  Y  I  S  G  C  I  S  K  G  P  Y  C  V  A  Q  Y  I  D  *  Y  E  Q  L  I  L  I  M  L  F  V  W  F  F  *  Y  N  S  R  F  Q  V  E  I  F  N  I  N  K  H  T  *  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74360" stop="74277"/>
                    <exon start="73631" stop="73555"/>
                    <exon start="73451" stop="73361"/>
                    <exon start="72874" stop="72704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCEEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74360" e_stop="74277"/>
            <exon e_start="73631" e_stop="73555"/>
            <exon e_start="73451" e_stop="73361"/>
            <exon e_start="72874" e_stop="72459"/>
            <exon e_start="72163" e_stop="72116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.354" e_score="0.983"/>
          <exon-only e_score="0.646"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="74360" e_stop="74277" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73631" e_stop="73555" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="73451" e_stop="73361" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="72874" e_stop="72459" e_length="416"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.354">
            <gDNA_intron_boundary i_start="72458" i_stop="72164" i_length="295"/>
          </intron>
          <exon e_serial="5" e_score="0.646">
            <gDNA_exon_boundary e_start="72163" e_stop="72116" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74360" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74360" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72684" stop="72459"/>
              <exon start="72163" stop="72116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544826" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG : GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG : TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAG : ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTATGTTGTTTGTATGGTTCTTTTGATATAACTCTCGATTTCAAGTCGAAATATTCAACATAAATAAA : GTAAATGCAAAGAATTAGTCAATAGGAAAATCAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> D  C  E  E  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  :  A  A  R  K  S  A  P  T  T  G  G  V  K  K  P  H  R  Y  R  P  G  T  V  A  L  R :   E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  :  T  D  L  R  F  Q  S  H  A  V  L  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  A  V  Q  D  A  D  *  S  I  S  F  W  L  F  V  Y  V  F  S  L  N  V  P  K  L  V  Y  L  L  F  V  P  G  C  T  S  V  D  A  Y  L  K  D  L  I  V  L  L  N  T  L  I  N  M  N  S  *  F  *  L  C  C  L  Y  G  S  F  D  I  T  L  D  F  K  S  K  Y  S  T  *  I  K :   *  M  Q  R  I  S  Q  *  E  N  Q  K  K  K  K   </first_frame>
            <second_frame>  I  V  K  K  W  L  V  L  S  R  Q  L  V  N  Q  P  V  E  R  L  Q  G  S  N  L  L  Q  R :   L  Q  G  S  Q  P  L  P  Q  E  E  *  R  S  L  I  V  T  D  L  E  L  L  L  S   : V  K  S  E  N  I  K  R  A  L  S  F  S  S  G  S  C  H  S  K  G  L  S  V  K  L  L  R  I  L  R :   Q  I  *  G  F  K  V  M  L  C  L  H  S  K  K  P  L  K  R  I  *  L  V  S  L  R  T  P  T  C  V  P  S  M  L  R  E  S  P  *  C  P  R  I  F  N  L  Q  D  V  F  V  E  N  E  L  K  L  F  K  M  L  I  N  Q  S  L  F  G  Y  S  C  M  F  L  A  L  T  Y  R  N  *  Y  I  F  C  L  C  L  D  V  H  Q  W  M  H  I  *  R  T  L  L  C  C  S  I  H  *  L  I  *  T  A  D  F  D  Y  V  V  C  M  V  L  L  I  *  L  S  I  S  S  R  N  I  Q  H  K  *   : S  K  C  K  E  L  V  N  R  K  I  K  K  K  K  K  </second_frame>
            <third_frame>   L  *  R  N  G  S  Y  *  A  D  S  S  *  I  N  R  W  K  G  S  K  E  A  T  C  Y  K   : G  C  K  E  V  S  P  Y  H  R  R  S  E  E  A  S  S  L  P  T  W  N  C  C  S  P  :  *  N  P  K  I  S  K  E  H  *  A  S  H  P  E  V  A  I  P  K  A  C  P  *  N  C  S  G  F  *   : D  R  S  E  V  S  K  S  C  C  A  C  T  P  R  S  R  *  S  V  F  S  W  S  L  *  G  H  Q  L  V  C  H  P  C  *  E  S  H  H  N  A  Q  G  Y  S  T  C  K  T  Y  S  W  R  T  S  L  S  C  S  R  C  *  L  I  N  L  F  L  V  I  R  V  C  F  *  P  *  R  T  E  T  S  I  S  F  V  C  A  W  M  Y  I  S  G  C  I  S  K  G  P  Y  C  V  A  Q  Y  I  D  *  Y  E  Q  L  I  L  I  M  L  F  V  W  F  F  *  Y  N  S  R  F  Q  V  E  I  F  N  I  N  K  :  V  N  A  K  N  *  S  I  G  K  S  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74360" stop="74277"/>
                    <exon start="73631" stop="73555"/>
                    <exon start="73451" stop="73361"/>
                    <exon start="72874" stop="72704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCEEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74538" e_stop="74493"/>
            <exon e_start="74359" e_stop="74277"/>
            <exon e_start="73631" e_stop="73555"/>
            <exon e_start="73451" e_stop="73361"/>
            <exon e_start="72874" e_stop="72523"/>
            <exon e_start="72132" e_stop="72116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74538" e_stop="74493" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74492" i_stop="74360" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74359" e_stop="74277" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74276" i_stop="73632" i_length="645"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73631" e_stop="73555" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73554" i_stop="73452" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="73451" e_stop="73361" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="73360" i_stop="72875" i_length="486"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="72874" e_stop="72523" e_length="352"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72522" i_stop="72133" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="0.941">
            <gDNA_exon_boundary e_start="72132" e_stop="72116" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74538" stop="74493"/>
              <exon start="74359" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74521" stop="74493"/>
              <exon start="74359" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72523"/>
              <exon start="72132" stop="72116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74354" stop="74277"/>
              <exon start="73631" stop="73555"/>
              <exon start="73451" stop="73361"/>
              <exon start="72874" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTACACTTTCAAATTTCAAATTCTCTCTGCAACTTTCTCAG : ATTGTGAAGAAATGGCTCGTACTAAGCAGACAGCTCGTAAATCAACCGGTGGAAAGGCTCCAAGGAAGCAACTTGCTACAAAG : GCTGCAAGGAAGTCAGCCCCTACCACAGGAGGAGTGAAGAAGCCTCATCGTTACCGACCTGGAACTGTTGCTCTCCG : TGAAATCCGAAAATATCAAAAGAGCACTGAGCTTCTCATCCGGAAGTTGCCATTCCAAAGGCTTGTCCGTGAAATTGCTCAGGATTTTAAG : ACAGATCTGAGGTTTCAAAGTCATGCTGTGCTTGCACTCCAAGAAGCCGCTGAAGCGTATTTAGTTGGTCTCTTTGAGGACACCAACTTGTGTGCCATCCATGCTAAGAGAGTCACCATAATGCCCAAGGATATTCAACTTGCAAGACGTATTCGTGGAGAACGAGCTTAAGCTGTTCAAGATGCTGATTAATCAATCTCTTTTTGGTTATTCGTGTATGTTTTTAGCCTTAACGTACCGAAACTAGTATATCTTTTGTTTGTGCCTGGATGTACATCAGTGGATGCATATCTAAAGGACCTTATTGTGTTGCTCAATACATTGATTAATATGAACAGCTGATTTTGATTAT : CAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> L  F  Y  T  F  K  F  Q  I  L  S  A  T  F  S   : D  C  E  E  M  A  R  T  K  Q  T  A  R  K  S  T  G  G  K  A  P  R  K  Q  L  A  T  K  :  A  A  R  K  S  A  P  T  T  G  G  V  K  K  P  H  R  Y  R  P  G  T  V  A  L  R :   E  I  R  K  Y  Q  K  S  T  E  L  L  I  R  K  L  P  F  Q  R  L  V  R  E  I  A  Q  D  F  K  :  T  D  L  R  F  Q  S  H  A  V  L  A  L  Q  E  A  A  E  A  Y  L  V  G  L  F  E  D  T  N  L  C  A  I  H  A  K  R  V  T  I  M  P  K  D  I  Q  L  A  R  R  I  R  G  E  R  A  *  A  V  Q  D  A  D  *  S  I  S  F  W  L  F  V  Y  V  F  S  L  N  V  P  K  L  V  Y  L  L  F  V  P  G  C  T  S  V  D  A  Y  L  K  D  L  I  V  L  L  N  T  L  I  N  M  N  S  *  F  *  L   : S  K  K  K  K  K </first_frame>
            <second_frame>  F  F  T  L  S  N  F  K  F  S  L  Q  L  S  Q  :  I  V  K  K  W  L  V  L  S  R  Q  L  V  N  Q  P  V  E  R  L  Q  G  S  N  L  L  Q  R :   L  Q  G  S  Q  P  L  P  Q  E  E  *  R  S  L  I  V  T  D  L  E  L  L  L  S   : V  K  S  E  N  I  K  R  A  L  S  F  S  S  G  S  C  H  S  K  G  L  S  V  K  L  L  R  I  L  R :   Q  I  *  G  F  K  V  M  L  C  L  H  S  K  K  P  L  K  R  I  *  L  V  S  L  R  T  P  T  C  V  P  S  M  L  R  E  S  P  *  C  P  R  I  F  N  L  Q  D  V  F  V  E  N  E  L  K  L  F  K  M  L  I  N  Q  S  L  F  G  Y  S  C  M  F  L  A  L  T  Y  R  N  *  Y  I  F  C  L  C  L  D  V  H  Q  W  M  H  I  *  R  T  L  L  C  C  S  I  H  *  L  I  *  T  A  D  F  D  Y  :  Q  K  K  K  K   </second_frame>
            <third_frame>   F  L  H  F  Q  I  S  N  S  L  C  N  F  L  R :   L  *  R  N  G  S  Y  *  A  D  S  S  *  I  N  R  W  K  G  S  K  E  A  T  C  Y  K   : G  C  K  E  V  S  P  Y  H  R  R  S  E  E  A  S  S  L  P  T  W  N  C  C  S  P  :  *  N  P  K  I  S  K  E  H  *  A  S  H  P  E  V  A  I  P  K  A  C  P  *  N  C  S  G  F  *   : D  R  S  E  V  S  K  S  C  C  A  C  T  P  R  S  R  *  S  V  F  S  W  S  L  *  G  H  Q  L  V  C  H  P  C  *  E  S  H  H  N  A  Q  G  Y  S  T  C  K  T  Y  S  W  R  T  S  L  S  C  S  R  C  *  L  I  N  L  F  L  V  I  R  V  C  F  *  P  *  R  T  E  T  S  I  S  F  V  C  A  W  M  Y  I  S  G  C  I  S  K  G  P  Y  C  V  A  Q  Y  I  D  *  Y  E  Q  L  I  L  I  I :   K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74538" stop="74493"/>
                    <exon start="74359" stop="74277"/>
                    <exon start="73631" stop="73555"/>
                    <exon start="73451" stop="73361"/>
                    <exon start="72874" stop="72704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFYTFKFQILSATFSDCEEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="72222" PGL_stop="72683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72222" e_stop="72243"/>
            <exon e_start="72451" e_stop="72683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.636"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.636">
            <gDNA_exon_boundary e_start="72222" e_stop="72243" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72244" i_stop="72450" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="72451" e_stop="72683" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72222" stop="72243"/>
              <exon start="72451" stop="72683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATTTATAAGATCAATTATT : CATGTATGTTTATTTATGTTGAATATTTCGACTTGAAATCGAGAGTTATATCAAAAGAACCATACAAACAACATAATCAAAATCAGCTGTTCATATTAATCAATGTATTGAGCAACACAATAAGGTCCTTTAGATATGCATCCACTGATGTACATCCAGGCACAAACAAAAGATATACTAGTTTCGGTACGTTAAGGCTAAAAACATACACGAATAACCAAAAAGAGATTGAT</gDNA_template>
            <first_frame> V  I  Y  K  I  N  Y   : S  C  M  F  I  Y  V  E  Y  F  D  L  K  S  R  V  I  S  K  E  P  Y  K  Q  H  N  Q  N  Q  L  F  I  L  I  N  V  L  S  N  T  I  R  S  F  R  Y  A  S  T  D  V  H  P  G  T  N  K  R  Y  T  S  F  G  T  L  R  L  K  T  Y  T  N  N  Q  K  E  I  D </first_frame>
            <second_frame>  S  F  I  R  S  I  I  :  H  V  C  L  F  M  L  N  I  S  T  *  N  R  E  L  Y  Q  K  N  H  T  N  N  I  I  K  I  S  C  S  Y  *  S  M  Y  *  A  T  Q  *  G  P  L  D  M  H  P  L  M  Y  I  Q  A  Q  T  K  D  I  L  V  S  V  R  *  G  *  K  H  T  R  I  T  K  K  R  L   </second_frame>
            <third_frame>   H  L  *  D  Q  L  F :   M  Y  V  Y  L  C  *  I  F  R  L  E  I  E  S  Y  I  K  R  T  I  Q  T  T  *  S  K  S  A  V  H  I  N  Q  C  I  E  Q  H  N  K  V  L  *  I  C  I  H  *  C  T  S  R  H  K  Q  K  I  Y  *  F  R  Y  V  K  A  K  N  I  H  E  *  P  K  R  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72222" stop="72243"/>
                    <exon start="72451" stop="72683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIYKINYSCMFIYVEYFDLKSRVISKEPYKQHNQNQLFILINVLSNTIRSFRYASTDVHPGTNKRYTSFGTLRLKTYTNNQKEID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="75289" PGL_stop="78164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75289" e_stop="75416"/>
            <exon e_start="76682" e_stop="76852"/>
            <exon e_start="77795" e_stop="78164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.600" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="75289" e_stop="75416" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.600">
            <gDNA_intron_boundary i_start="75417" i_stop="76681" i_length="1265"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76682" e_stop="76852" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76853" i_stop="77794" i_length="942"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77795" e_stop="78164" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75289" stop="75416"/>
              <exon start="76682" stop="76852"/>
              <exon start="77795" stop="78164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77795" stop="78137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77795" stop="78137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77795" stop="78137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGATTTGACAAGAGTTATAGTGAGATCTACAGTTCAATTCATCAATGGAGGGCTATGTGTGGGCAATAGCCGCTGGGTTCAACGCAGCTCTTGCAGCCATCTCTGCCAAATTCTTCACCTCCCAG : CTCATCAAATATGGTTGTGTCATATTATTCAATGTCACAATGTGGGGATGCTATGTCAATAGCCTTAAAGCTCTATCATCTCTACAAGCTACTGTGACTAACTTTGCAACCAACTTTTTATCATCTGGATTGGCTGGATTTTTGCTTTTTCGGGAGCCACTACCAATCCAG : TGGTTTGCAGGCGCCTCCCTTATCGTGCTTGGAGTTATTGTTTTGAGCAAGTCAAGCATAGAGAAGAAAACTCATACAAGTTAAATTTAGAGAAGGTGTGAGCCAAATATCAGATGTAGATTTTAATGGCCTTAACATGAACTACTGTTAAATTCATGTCTCAGAATCAGTTTATTTTGCACTATTGTGGCTGTTGATATAATTGTTGCTCTTGTAATATTCCAATACTGGGACTCTCTCCATGTTGTACGACTCTACGTGATCGTGATGTCACTGATGAAATTACGTTGAATATGTCATTGTTAGTACTTAGTCCTAATATCTATTTGAGGACTGCTTTAAAATTGGTTCTTTAATATACTCTTGCACA</gDNA_template>
            <first_frame> *  *  F  D  K  S  Y  S  E  I  Y  S  S  I  H  Q  W  R  A  M  C  G  Q  *  P  L  G  S  T  Q  L  L  Q  P  S  L  P  N  S  S  P  P  S :   S  S  N  M  V  V  S  Y  Y  S  M  S  Q  C  G  D  A  M  S  I  A  L  K  L  Y  H  L  Y  K  L  L  *  L  T  L  Q  P  T  F  Y  H  L  D  W  L  D  F  C  F  F  G  S  H  Y  Q  S  S :   G  L  Q  A  P  P  L  S  C  L  E  L  L  F  *  A  S  Q  A  *  R  R  K  L  I  Q  V  K  F  R  E  G  V  S  Q  I  S  D  V  D  F  N  G  L  N  M  N  Y  C  *  I  H  V  S  E  S  V  Y  F  A  L  L  W  L  L  I  *  L  L  L  L  *  Y  S  N  T  G  T  L  S  M  L  Y  D  S  T  *  S  *  C  H  *  *  N  Y  V  E  Y  V  I  V  S  T  *  S  *  Y  L  F  E  D  C  F  K  I  G  S  L  I  Y  S  C  T </first_frame>
            <second_frame>  D  D  L  T  R  V  I  V  R  S  T  V  Q  F  I  N  G  G  L  C  V  G  N  S  R  W  V  Q  R  S  S  C  S  H  L  C  Q  I  L  H  L  P   : A  H  Q  I  W  L  C  H  I  I  Q  C  H  N  V  G  M  L  C  Q  *  P  *  S  S  I  I  S  T  S  Y  C  D  *  L  C  N  Q  L  F  I  I  W  I  G  W  I  F  A  F  S  G  A  T  T  N  P   : V  V  C  R  R  L  P  Y  R  A  W  S  Y  C  F  E  Q  V  K  H  R  E  E  N  S  Y  K  L  N  L  E  K  V  *  A  K  Y  Q  M  *  I  L  M  A  L  T  *  T  T  V  K  F  M  S  Q  N  Q  F  I  L  H  Y  C  G  C  *  Y  N  C  C  S  C  N  I  P  I  L  G  L  S  P  C  C  T  T  L  R  D  R  D  V  T  D  E  I  T  L  N  M  S  L  L  V  L  S  P  N  I  Y  L  R  T  A  L  K  L  V  L  *  Y  T  L  A   </second_frame>
            <third_frame>   M  I  *  Q  E  L  *  *  D  L  Q  F  N  S  S  M  E  G  Y  V  W  A  I  A  A  G  F  N  A  A  L  A  A  I  S  A  K  F  F  T  S  Q  :  L  I  K  Y  G  C  V  I  L  F  N  V  T  M  W  G  C  Y  V  N  S  L  K  A  L  S  S  L  Q  A  T  V  T  N  F  A  T  N  F  L  S  S  G  L  A  G  F  L  L  F  R  E  P  L  P  I  Q  :  W  F  A  G  A  S  L  I  V  L  G  V  I  V  L  S  K  S  S  I  E  K  K  T  H  T  S  *  I  *  R  R  C  E  P  N  I  R  C  R  F  *  W  P  *  H  E  L  L  L  N  S  C  L  R  I  S  L  F  C  T  I  V  A  V  D  I  I  V  A  L  V  I  F  Q  Y  W  D  S  L  H  V  V  R  L  Y  V  I  V  M  S  L  M  K  L  R  *  I  C  H  C  *  Y  L  V  L  I  S  I  *  G  L  L  *  N  W  F  F  N  I  L  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75315" stop="75416"/>
                    <exon start="76682" stop="76852"/>
                    <exon start="77795" stop="77878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQFNSSMEGYVWAIAAGFNAALAAISAKFFTSQLIKYGCVILFNVTMWGCYVNSLKALSSLQATVTNFATNFLSSGLAGFLLFREPLPIQWFAGASLIVLGVIVLSKSSIEKKTHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="79738" PGL_stop="85124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79994" e_stop="80079"/>
            <exon e_start="82113" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
            <exon e_start="85104" e_stop="85124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.167" e_score="0.988"/>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="79994" e_stop="80079" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.167">
            <gDNA_intron_boundary i_start="80080" i_stop="82112" i_length="2033"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82113" e_stop="82168" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84738" i_stop="85103" i_length="366"/>
          </intron>
          <exon e_serial="5" e_score="0.762">
            <gDNA_exon_boundary e_start="85104" e_stop="85124" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79994" stop="80079"/>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="84737"/>
              <exon start="85104" stop="85124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTAT : GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT : ATCAAAAGAGAAACTAATAAA</gDNA_template>
            <first_frame> Y  L  F  Q  V  R  V  L  S  F  D  P  L  S  F  L  I  F  I  F  S  Q  I  C  I  S  S  A  M :   F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *   : Y  Q  K  R  N  *  *  </first_frame>
            <second_frame>  I  S  F  K  L  G  F  *  V  L  T  L  F  L  S  *  F  L  F  F  L  R  Y  V  S  A  L  L   : C  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S  :  I  K  R  E  T  N  K </second_frame>
            <third_frame>   S  L  S  S  *  G  F  E  F  *  P  S  F  F  L  D  F  Y  F  F  S  D  M  Y  Q  L  C  Y  :  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L  V :   S  K  E  K  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81865" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="0.984"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="81865" e_stop="82168" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81865" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATCTGCTCCTGTGATTGCCTTAGCTTTCCATAATTCATAACTAATGTATGCTTCTATTTTCCTCTTTTGGGATGGGTTTTTTTTATATGAAGTCGGGATAATTCTAATGTCCGGTGTCTAATGGAACAACATATGTGTATTCTACCATGACCAAAGCATTACAAATCTTGTGTTCTTTTCTCATTTCTGCTTCCTTATGTTTCTTTAGGGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</gDNA_template>
            <first_frame> *  N  L  L  L  *  L  P  *  L  S  I  I  H  N  *  C  M  L  L  F  S  S  F  G  M  G  F  F  Y  M  K  S  G  *  F  *  C  P  V  S  N  G  T  T  Y  V  Y  S  T  M  T  K  A  L  Q  I  L  C  S  F  L  I  S  A  S  L  C  F  F  R  V  D  G  A  N  D  E  C  S  S  F  R  F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *  </first_frame>
            <second_frame>  E  I  C  S  C  D  C  L  S  F  P  *  F  I  T  N  V  C  F  Y  F  P  L  L  G  W  V  F  F  I  *  S  R  D  N  S  N  V  R  C  L  M  E  Q  H  M  C  I  L  P  *  P  K  H  Y  K  S  C  V  L  F  S  F  L  L  P  Y  V  S  L  G  S  T  E  L  M  M  S  A  R  L  S  G  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S </second_frame>
            <third_frame>   K  S  A  P  V  I  A  L  A  F  H  N  S  *  L  M  Y  A  S  I  F  L  F  W  D  G  F  F  L  Y  E  V  G  I  I  L  M  S  G  V  *  W  N  N  I  C  V  F  Y  H  D  Q  S  I  T  N  L  V  F  F  S  H  F  C  F  L  M  F  L  *  G  R  R  S  *  *  *  V  L  V  F  Q  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80041" e_stop="80143"/>
            <exon e_start="82113" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.167" e_score="0.981"/>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="80041" e_stop="80143" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.167">
            <gDNA_intron_boundary i_start="80144" i_stop="82112" i_length="1969"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82113" e_stop="82168" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80041" stop="80143"/>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="84035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTG : GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</gDNA_template>
            <first_frame> D  F  Y  F  F  S  D  M  Y  Q  L  C  Y  V  S  F  T  C  S  L  *  W  V  Y  L  L  F  L  L  F  V  Y  F  V   : G  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S </first_frame>
            <second_frame>  I  F  I  F  S  Q  I  C  I  S  S  A  M  *  A  L  H  V  V  F  N  G  C  I  F  F  F  Y  F  L  C  I  L  L  :  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L   </second_frame>
            <third_frame>   F  L  F  F  L  R  Y  V  S  A  L  L  C  K  L  Y  M  *  S  L  M  G  V  S  S  F  S  T  F  C  V  F  C  W :   F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="79987" e_stop="80143"/>
            <exon e_start="82077" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79987" e_stop="80143" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80144" i_stop="82076" i_length="1933"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82077" e_stop="82168" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79987" stop="80143"/>
              <exon start="82077" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATATTTATCTCTTTCAAGTTAGGGTTTTGAGTTTTGACCCTCTTTCTTTCTTGATTTTTATTTTTTCTCAGATATGTATCAGCTCTGCTATGTAAGCTTTACATGTAGTCTTTAATGGGTGTATCTTCTTTTTCTACTTTTTGTGTATTTTGTTG : GGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</gDNA_template>
            <first_frame> *  Y  L  S  L  S  S  *  G  F  E  F  *  P  S  F  F  L  D  F  Y  F  F  S  D  M  Y  Q  L  C  Y  V  S  F  T  C  S  L  *  W  V  Y  L  L  F  L  L  F  V  Y  F  V   : G  S  T  E  L  M  M  S  A  R  L  S  G  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S </first_frame>
            <second_frame>  D  I  Y  L  F  Q  V  R  V  L  S  F  D  P  L  S  F  L  I  F  I  F  S  Q  I  C  I  S  S  A  M  *  A  L  H  V  V  F  N  G  C  I  F  F  F  Y  F  L  C  I  L  L  :  G  R  R  S  *  *  *  V  L  V  F  Q  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L   </second_frame>
            <third_frame>   I  F  I  S  F  K  L  G  F  *  V  L  T  L  F  L  S  *  F  L  F  F  L  R  Y  V  S  A  L  L  C  K  L  Y  M  *  S  L  M  G  V  S  S  F  S  T  F  C  V  F  C  W :   V  D  G  A  N  D  E  C  S  S  F  R  F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="79933" e_stop="80005"/>
            <exon e_start="82113" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.183" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79933" e_stop="80005" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.183" acc_prob="0.167">
            <gDNA_intron_boundary i_start="80006" i_stop="82112" i_length="2107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82113" e_stop="82168" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79933" stop="80005"/>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGATGGGTGATGTCAATGTTGCTCTTTCTTTCAACTACTGCTCTTTCTTCACTGATATTTATCTCTTTCAA : GTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</gDNA_template>
            <first_frame> V  D  G  *  C  Q  C  C  S  F  F  Q  L  L  L  F  L  H  *  Y  L  S  L  S   : S  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S </first_frame>
            <second_frame>  L  M  G  D  V  N  V  A  L  S  F  N  Y  C  S  F  F  T  D  I  Y  L  F  Q  :  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L   </second_frame>
            <third_frame>   *  W  V  M  S  M  L  L  F  L  S  T  T  A  L  S  S  L  I  F  I  S  F  K :   F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="79738" e_stop="79872"/>
            <exon e_start="82077" e_stop="82168"/>
            <exon e_start="83230" e_stop="83371"/>
            <exon e_start="83605" e_stop="84737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79738" e_stop="79872" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.990">
            <gDNA_intron_boundary i_start="79873" i_stop="82076" i_length="2204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82077" e_stop="82168" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.867">
            <gDNA_intron_boundary i_start="82169" i_stop="83229" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83230" e_stop="83371" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83372" i_stop="83604" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="83605" e_stop="84737" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79738" stop="79872"/>
              <exon start="82077" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="82168"/>
              <exon start="83230" stop="83371"/>
              <exon start="83605" stop="83791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83680" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83973" stop="84526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83976" stop="84737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACACTATAGATATATCAAAGTGGATTTGAGTACTGTAATATTTTTTTTCCAAAGGGTAATAAAGAAACTCAAGAAAGAGAGAGGAAGAAAACAAAAAGATGCTGGTATGGGTGTTGGTATTGGTGTTGACAG : GGTCGACGGAGCTAATGATGAGTGCTCGTCTTTCAGGTTCTTTATGATTCAGCCTTGACTAAGAGAATGCAGATCTGAACTGTTGGTAGTCG : GTGTTGGTTTTTCCTTGATGAGTATATGTCGGTTCAGTTGGATTGAGGGCTGACGCTTATTTTGACATTAACTACCTGCATATATCATATGGATGACAGCGGGAATCGCGATAATGGAAGGCATAAACCACCTCAGGGTCAG : TGGTTGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCCATCATGGCAGAAAGAGATGCTGCCATACAAGAGAGGAATCTGGCCCTTTCTGAAAAAAAGGCTGCCTTGGCAGAGCGTGACATGGCTATCCTGCAGCGGGATTCAGCAATAGCAGAACGAAATAATGCCATCATGGAGCGGGATAATGCCTTTGCTACACTTCAGTATCGTGAAACCTCTATGACTGCTGGTCAGATTGTCCGTGGAGTGAAACATATGCACCATCCTCAGCAACATGTACATCACCAGCCACATATGGGAGAACCAACATATAACCCCAGAGAAATGCACATGGTTGAAGCCATACCAGTTTCCCAACCTGCTCCGGAGCCAGCAAAGCCCCGTCGAAACAAAAGAGCCAAGGAGCCAAAGGCAGCAACAGGTTCCAAGAAGACTCCAAAAGCATCAAAGAAAGTAAAAAGGGAAACTGAAGATCTTAACCAAACCACATATGGCAAGTCTCCAGAGTGGAAGGGTGCGCAAGAGATGGTTGGGGCAAGCGATGACCTTAACAGACAGTTATCTGTGGCAAAACCCGACTGGAAGGATCAGGACCTCGGGCTCAATCAAGTTGCTTTTGATGAAACAACCATGCCAGTCCCAGTCTGTTCCTGCACCGGAGTCTTGAGACCTTGCTACAAATGGGGAAATGGAGGTTGGCAATCTTCATGTTGCACAACCAATTTGTCGATGTATCCTCTACCAGCTGTTCCCAACAAACGACATGCTCGAATTGGTGGTAGAAAAATGAGTGGAAGTGCATTCACCAAGCTGCTTAGTCGTCTGGCAGCCGAAGGCCATGATCTATCAAATCCAGTTGATCTTAAGAACAACTGGGCAAAGCATGGGACGAATCGCTACATCACCATCAAGTAATGCTTCCAAAGTCTTCAATCTAGGACGGTATACCTCAACATCGTTTACATATTATGTTTTCTGTTCATCAACTTCCTTTAGCCCCTATGTAAGTTTGTCATCGTTCTAAAATGTTAGCTGGATTCGGAGTTGGATCAACGAGAGATAACTGTAAAGAAGCCTGTATTCAGGATACTTTGCAACAACGTTGATGTTAAATGTATTGAATATCTAGT</gDNA_template>
            <first_frame> K  T  L  *  I  Y  Q  S  G  F  E  Y  C  N  I  F  F  P  K  G  N  K  E  T  Q  E  R  E  R  K  K  T  K  R  C  W  Y  G  C  W  Y  W  C  *  Q  :  G  R  R  S  *  *  *  V  L  V  F  Q  V  L  Y  D  S  A  L  T  K  R  M  Q  I  *  T  V  G  S  R :   C  W  F  F  L  D  E  Y  M  S  V  Q  L  D  *  G  L  T  L  I  L  T  L  T  T  C  I  Y  H  M  D  D  S  G  N  R  D  N  G  R  H  K  P  P  Q  G  Q  :  W  L  M  Q  H  Q  P  S  M  K  Q  I  M  A  I  M  A  E  R  D  A  A  I  Q  E  R  N  L  A  L  S  E  K  K  A  A  L  A  E  R  D  M  A  I  L  Q  R  D  S  A  I  A  E  R  N  N  A  I  M  E  R  D  N  A  F  A  T  L  Q  Y  R  E  T  S  M  T  A  G  Q  I  V  R  G  V  K  H  M  H  H  P  Q  Q  H  V  H  H  Q  P  H  M  G  E  P  T  Y  N  P  R  E  M  H  M  V  E  A  I  P  V  S  Q  P  A  P  E  P  A  K  P  R  R  N  K  R  A  K  E  P  K  A  A  T  G  S  K  K  T  P  K  A  S  K  K  V  K  R  E  T  E  D  L  N  Q  T  T  Y  G  K  S  P  E  W  K  G  A  Q  E  M  V  G  A  S  D  D  L  N  R  Q  L  S  V  A  K  P  D  W  K  D  Q  D  L  G  L  N  Q  V  A  F  D  E  T  T  M  P  V  P  V  C  S  C  T  G  V  L  R  P  C  Y  K  W  G  N  G  G  W  Q  S  S  C  C  T  T  N  L  S  M  Y  P  L  P  A  V  P  N  K  R  H  A  R  I  G  G  R  K  M  S  G  S  A  F  T  K  L  L  S  R  L  A  A  E  G  H  D  L  S  N  P  V  D  L  K  N  N  W  A  K  H  G  T  N  R  Y  I  T  I  K  *  C  F  Q  S  L  Q  S  R  T  V  Y  L  N  I  V  Y  I  L  C  F  L  F  I  N  F  L  *  P  L  C  K  F  V  I  V  L  K  C  *  L  D  S  E  L  D  Q  R  E  I  T  V  K  K  P  V  F  R  I  L  C  N  N  V  D  V  K  C  I  E  Y  L   </first_frame>
            <second_frame>  K  H  Y  R  Y  I  K  V  D  L  S  T  V  I  F  F  F  Q  R  V  I  K  K  L  K  K  E  R  G  R  K  Q  K  D  A  G  M  G  V  G  I  G  V  D  R :   V  D  G  A  N  D  E  C  S  S  F  R  F  F  M  I  Q  P  *  L  R  E  C  R  S  E  L  L  V  V   : G  V  G  F  S  L  M  S  I  C  R  F  S  W  I  E  G  *  R  L  F  *  H  *  L  P  A  Y  I  I  W  M  T  A  G  I  A  I  M  E  G  I  N  H  L  R  V  S :   G  *  C  S  I  S  H  Q  *  S  R  *  W  P  S  W  Q  K  E  M  L  P  Y  K  R  G  I  W  P  F  L  K  K  R  L  P  W  Q  S  V  T  W  L  S  C  S  G  I  Q  Q  *  Q  N  E  I  M  P  S  W  S  G  I  M  P  L  L  H  F  S  I  V  K  P  L  *  L  L  V  R  L  S  V  E  *  N  I  C  T  I  L  S  N  M  Y  I  T  S  H  I  W  E  N  Q  H  I  T  P  E  K  C  T  W  L  K  P  Y  Q  F  P  N  L  L  R  S  Q  Q  S  P  V  E  T  K  E  P  R  S  Q  R  Q  Q  Q  V  P  R  R  L  Q  K  H  Q  R  K  *  K  G  K  L  K  I  L  T  K  P  H  M  A  S  L  Q  S  G  R  V  R  K  R  W  L  G  Q  A  M  T  L  T  D  S  Y  L  W  Q  N  P  T  G  R  I  R  T  S  G  S  I  K  L  L  L  M  K  Q  P  C  Q  S  Q  S  V  P  A  P  E  S  *  D  L  A  T  N  G  E  M  E  V  G  N  L  H  V  A  Q  P  I  C  R  C  I  L  Y  Q  L  F  P  T  N  D  M  L  E  L  V  V  E  K  *  V  E  V  H  S  P  S  C  L  V  V  W  Q  P  K  A  M  I  Y  Q  I  Q  L  I  L  R  T  T  G  Q  S  M  G  R  I  A  T  S  P  S  S  N  A  S  K  V  F  N  L  G  R  Y  T  S  T  S  F  T  Y  Y  V  F  C  S  S  T  S  F  S  P  Y  V  S  L  S  S  F  *  N  V  S  W  I  R  S  W  I  N  E  R  *  L  *  R  S  L  Y  S  G  Y  F  A  T  T  L  M  L  N  V  L  N  I  *  </second_frame>
            <third_frame>   N  T  I  D  I  S  K  W  I  *  V  L  *  Y  F  F  S  K  G  *  *  R  N  S  R  K  R  E  E  E  N  K  K  M  L  V  W  V  L  V  L  V  L  T   : G  S  T  E  L  M  M  S  A  R  L  S  G  S  L  *  F  S  L  D  *  E  N  A  D  L  N  C  W  *  S  :  V  L  V  F  P  *  *  V  Y  V  G  S  V  G  L  R  A  D  A  Y  F  D  I  N  Y  L  H  I  S  Y  G  *  Q  R  E  S  R  *  W  K  A  *  T  T  S  G  S   : V  V  D  A  A  S  A  I  N  E  A  D  N  G  H  H  G  R  K  R  C  C  H  T  R  E  E  S  G  P  F  *  K  K  G  C  L  G  R  A  *  H  G  Y  P  A  A  G  F  S  N  S  R  T  K  *  C  H  H  G  A  G  *  C  L  C  Y  T  S  V  S  *  N  L  Y  D  C  W  S  D  C  P  W  S  E  T  Y  A  P  S  S  A  T  C  T  S  P  A  T  Y  G  R  T  N  I  *  P  Q  R  N  A  H  G  *  S  H  T  S  F  P  T  C  S  G  A  S  K  A  P  S  K  Q  K  S  Q  G  A  K  G  S  N  R  F  Q  E  D  S  K  S  I  K  E  S  K  K  G  N  *  R  S  *  P  N  H  I  W  Q  V  S  R  V  E  G  C  A  R  D  G  W  G  K  R  *  P  *  Q  T  V  I  C  G  K  T  R  L  E  G  S  G  P  R  A  Q  S  S  C  F  *  *  N  N  H  A  S  P  S  L  F  L  H  R  S  L  E  T  L  L  Q  M  G  K  W  R  L  A  I  F  M  L  H  N  Q  F  V  D  V  S  S  T  S  C  S  Q  Q  T  T  C  S  N  W  W  *  K  N  E  W  K  C  I  H  Q  A  A  *  S  S  G  S  R  R  P  *  S  I  K  S  S  *  S  *  E  Q  L  G  K  A  W  D  E  S  L  H  H  H  Q  V  M  L  P  K  S  S  I  *  D  G  I  P  Q  H  R  L  H  I  M  F  S  V  H  Q  L  P  L  A  P  M  *  V  C  H  R  S  K  M  L  A  G  F  G  V  G  S  T  R  D  N  C  K  E  A  C  I  Q  D  T  L  Q  Q  R  *  C  *  M  Y  *  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83276" stop="83371"/>
                    <exon start="83605" stop="84522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLTLILTLTTCIYHMDDSGNRDNGRHKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMTAGQIVRGVKHMHHPQQHVHHQPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNKRAKEPKAATGSKKTPKASKKVKRETEDLNQTTYGKSPEWKGAQEMVGASDDLNRQLSVAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="80702" e_stop="81511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="80702" e_stop="81511" e_length="810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80702" stop="81511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80703" stop="81225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACTCTTTAGGTTAAATTGCATCTTGTAATGAAATTTTTGAGGGTTGTTCAAGTTTATCCTGAAGCAGCCTTTCTCAATGTGGCATATCCATTAGTAGTTGAAACCACAGCAGTTTATTTTTTTGTTGGATAAAAATAATTGACTCGTAGGTAATCCGAGAGCTTCGTAGGTGGGATTTTTTTGGCAAAGGAAAGTCGAGAGAAAGGGTGATAGCTATTCTAGCAAGTCTTCTGCGGAGGAGTAGCACTAGGCTAGTGAGTTATTAGACTAGTCTCGATTCCTCAAGGTTGTAGTAGCTGTAATAGTAGTTGAAAAACCTCACGTCCCGAGTGGGCTAAGTCCACAGTAAGCTGTAGTCGTGGAAGATAACTAATGACTACTAATTTTGTTCATTTTATTGCAAGTTTTTTAGCATGAGAAGATACTTATATTGTAAATAGACCTGCTACTTAGTTCCAGTCAGTAGGAACATGTTGTAGAAACTGCAATATGTCCTAATTGATCATTCATGTTTTCGATGAAGAGACCACACTCATTTAAGAAAGTGCTATTTGTAAGATTATCTCAACTCTTTATGAGTTTGACATTTGCAAGATTATCATACCAAATTGGCAACATGGAGCTTCCATTTTTTCGTACTGGCCCTTGATAGTTTGATATGGAATTAAGCTGTATTTATGGAATCATTTTGTCTCAATCAATCAAGCATTATGAGTTATGGTGCAATGTTGTTTCAGAAGTGAATATTGCATAAATTCTTTTTTCAATATGTATTTTAACTTGGATTTTATCTTGAAATCAGTTACC</gDNA_template>
            <first_frame> V  T  L  *  V  K  L  H  L  V  M  K  F  L  R  V  V  Q  V  Y  P  E  A  A  F  L  N  V  A  Y  P  L  V  V  E  T  T  A  V  Y  F  F  V  G  *  K  *  L  T  R  R  *  S  E  S  F  V  G  G  I  F  L  A  K  E  S  R  E  K  G  *  *  L  F  *  Q  V  F  C  G  G  V  A  L  G  *  *  V  I  R  L  V  S  I  P  Q  G  C  S  S  C  N  S  S  *  K  T  S  R  P  E  W  A  K  S  T  V  S  C  S  R  G  R  *  L  M  T  T  N  F  V  H  F  I  A  S  F  L  A  *  E  D  T  Y  I  V  N  R  P  A  T  *  F  Q  S  V  G  T  C  C  R  N  C  N  M  S  *  L  I  I  H  V  F  D  E  E  T  T  L  I  *  E  S  A  I  C  K  I  I  S  T  L  Y  E  F  D  I  C  K  I  I  I  P  N  W  Q  H  G  A  S  I  F  S  Y  W  P  L  I  V  *  Y  G  I  K  L  Y  L  W  N  H  F  V  S  I  N  Q  A  L  *  V  M  V  Q  C  C  F  R  S  E  Y  C  I  N  S  F  F  N  M  Y  F  N  L  D  F  I  L  K  S  V  T </first_frame>
            <second_frame>  L  L  F  R  L  N  C  I  L  *  *  N  F  *  G  L  F  K  F  I  L  K  Q  P  F  S  M  W  H  I  H  *  *  L  K  P  Q  Q  F  I  F  L  L  D  K  N  N  *  L  V  G  N  P  R  A  S  *  V  G  F  F  W  Q  R  K  V  E  R  K  G  D  S  Y  S  S  K  S  S  A  E  E  *  H  *  A  S  E  L  L  D  *  S  R  F  L  K  V  V  V  A  V  I  V  V  E  K  P  H  V  P  S  G  L  S  P  Q  *  A  V  V  V  E  D  N  *  *  L  L  I  L  F  I  L  L  Q  V  F  *  H  E  K  I  L  I  L  *  I  D  L  L  L  S  S  S  Q  *  E  H  V  V  E  T  A  I  C  P  N  *  S  F  M  F  S  M  K  R  P  H  S  F  K  K  V  L  F  V  R  L  S  Q  L  F  M  S  L  T  F  A  R  L  S  Y  Q  I  G  N  M  E  L  P  F  F  R  T  G  P  *  *  F  D  M  E  L  S  C  I  Y  G  I  I  L  S  Q  S  I  K  H  Y  E  L  W  C  N  V  V  S  E  V  N  I  A  *  I  L  F  S  I  C  I  L  T  W  I  L  S  *  N  Q  L   </second_frame>
            <third_frame>   Y  S  L  G  *  I  A  S  C  N  E  I  F  E  G  C  S  S  L  S  *  S  S  L  S  Q  C  G  I  S  I  S  S  *  N  H  S  S  L  F  F  C  W  I  K  I  I  D  S  *  V  I  R  E  L  R  R  W  D  F  F  G  K  G  K  S  R  E  R  V  I  A  I  L  A  S  L  L  R  R  S  S  T  R  L  V  S  Y  *  T  S  L  D  S  S  R  L  *  *  L  *  *  *  L  K  N  L  T  S  R  V  G  *  V  H  S  K  L  *  S  W  K  I  T  N  D  Y  *  F  C  S  F  Y  C  K  F  F  S  M  R  R  Y  L  Y  C  K  *  T  C  Y  L  V  P  V  S  R  N  M  L  *  K  L  Q  Y  V  L  I  D  H  S  C  F  R  *  R  D  H  T  H  L  R  K  C  Y  L  *  D  Y  L  N  S  L  *  V  *  H  L  Q  D  Y  H  T  K  L  A  T  W  S  F  H  F  F  V  L  A  L  D  S  L  I  W  N  *  A  V  F  M  E  S  F  C  L  N  Q  S  S  I  M  S  Y  G  A  M  L  F  Q  K  *  I  L  H  K  F  F  F  Q  Y  V  F  *  L  G  F  Y  L  E  I  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90461" PGL_stop="93946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90461" e_stop="91869"/>
            <exon e_start="92014" e_stop="92146"/>
            <exon e_start="92232" e_stop="92316"/>
            <exon e_start="93478" e_stop="93946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.902" e_score="0.999"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.061" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="90461" e_stop="91869" e_length="1409"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="91870" i_stop="92013" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92014" e_stop="92146" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92147" i_stop="92231" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92232" e_stop="92316" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.061">
            <gDNA_intron_boundary i_start="92317" i_stop="93477" i_length="1161"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="93478" e_stop="93946" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90461" stop="91869"/>
              <exon start="92014" stop="92146"/>
              <exon start="92232" stop="92316"/>
              <exon start="93478" stop="93946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90472" stop="91166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90502" stop="91869"/>
              <exon start="92014" stop="92146"/>
              <exon start="92232" stop="92316"/>
              <exon start="93478" stop="93933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90503" stop="91053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90977" stop="91506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91571" stop="91869"/>
              <exon start="92014" stop="92146"/>
              <exon start="92232" stop="92316"/>
              <exon start="93478" stop="93536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACTTCTTCTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAG : GATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAG : AAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATG : CTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA</gDNA_template>
            <first_frame> F  T  S  S  L  L  F  S  F  I  S  V  Q  V  I  F  I  F  S  Y  K  F  N  R  N  H  R  H  F  Q  R  E  I  H  L  L  S  K  I  P  F  F  P  L  *  P  H  P  P  Q  L  H  F  H  Q  C  L  H  V  C  L  S  S  Y  S  T  V  A  P  L  N  F  D  Y  K  L  S  G  T  P  F  S  S  L  L  C  F  S  Q  S  C  F  S  F  I  C  C  L  G  F  C  V  C  L  N  W  I  G  L  K  Q  F  F  F  W  V  G  L  R  S  F  L  F  R  V  L  L  G  A  E  I  L  I  Y  L  M  R  I  A  E  V  L  *  L  L  R  R  N  S  I  W  G  V  G  K  I  E  S  F  A  G  F  I  C  *  F  L  M  A  Q  S  N  S  K  P  P  M  S  S  Q  N  F  G  V  G  A  V  S  H  V  R  S  L  S  Q  S  S  I  F  S  N  S  C  L  P  P  L  S  P  F  P  P  S  E  P  G  M  V  S  G  H  S  S  L  K  D  I  S  M  E  E  A  D  V  N  S  Q  G  V  G  V  V  S  S  F  T  R  D  G  L  P  P  R  K  G  H  R  R  S  N  S  D  V  P  L  G  F  S  A  M  I  Q  S  S  P  Q  L  M  P  I  S  G  Q  K  V  L  G  R  A  V  S  L  G  D  S  N  G  K  I  D  E  R  K  P  K  G  E  V  T  D  E  L  L  F  S  Y  M  N  L  E  N  I  E  T  L  N  G  S  G  T  K  D  R  D  K  D  S  I  V  S  G  T  K  V  T  G  S  E  S  S  N  N  E  A  E  S  V  M  K  G  N  N  V  S  I  Q  P  T  N  L  R  E  G  T  K  R  S  A  D  A  N  I  A  P  A  A  R  H  F  R  S  L  S  M  D  S  A  I  G  N  F  H  Y  G  D  E  S  P  N  L  P  T  S  L  M  M  R  S  G  Q  L  S  P  S  N  S  G  N  E  S  S  S  K  H  N  L  D  F  G  N  S  E  F  S  E  A  E  M  K  K  I  M  A  D  E  R  L  A  E  I  A  V  L  D  P  K  R  A  K  R :   I  L  A  N  R  L  S  A  A  R  S  K  E  R  K  T  R  Y  I  S  E  L  E  H  K  V  Q  K  L  Q  T  E  T  T  T  L  S  T  Q  V  T  I  L  Q  :  K  N  F  V  E  I  S  S  L  N  S  E  L  K  F  R  I  Q  A  M  E  Q  Q  A  Q  L  R  D   : A  L  H  E  A  L  T  A  E  V  Q  R  L  K  L  A  A  G  E  H  R  E  E  G  R  L  P  N  N  M  T  Q  Q  T  P  V  K  H  N  I  F  Q  M  Q  R  Q  Q  P  S  Q  M  Q  Q  L  S  V  G  K  A  S  A  A  S  A  T  P  A  S  A  *  W  A  K  I  K  A  F  E  E  V  K  I  I  S  T  *  S  L  K  V  Y  Y  F  N  Y  R  S  Y  M  L  R  T  N  S  E  K  L  S  F  Q  I  V  L  Y  S  Y  K  F  L  M  C  V  W  L  Q  F  I  L  Y  V  V  N  H  Y  F  V  L  W  K  *  L  Y  Q  *  I  G  V  K  L  C  G  A  N  V  F  S   </first_frame>
            <second_frame>  S  L  L  L  Y  S  S  L  S  Y  Q  Y  K  L  F  S  F  S  L  T  N  S  T  V  I  T  A  I  F  S  G  K  F  T  F  S  P  K  S  H  F  F  P  Y  N  P  T  P  H  N  F  T  F  I  N  V  C  T  F  V  S  H  H  I  Q  L  *  L  L  *  I  L  T  I  N  F  Q  V  L  R  F  L  P  C  S  A  F  L  N  L  V  F  H  S  S  V  V  W  G  F  V  F  V  *  I  G  L  G  *  N  S  F  F  F  G  W  V  *  G  V  F  Y  L  G  F  C  W  E  L  K  F  *  F  I  *  *  E  L  L  K  F  F  D  Y  Y  E  E  I  A  F  G  V  S  E  K  L  N  L  L  R  V  L  F  V  D  F  *  W  L  S  L  I  L  S  H  L  *  V  V  R  I  L  V  L  E  L  Y  L  M  *  G  R  Y  L  N  R  V  F  S  R  I  V  V  C  P  H  *  V  L  F  L  L  V  S  R  G  W  C  R  V  I  L  A  *  K  I  Y  P  W  R  K  Q  M  *  I  L  K  V  *  E  L  C  L  R  L  R  G  M  V  F  L  L  G  R  G  I  V  D  L  I  V  M  F  H  W  D  S  R  L  *  F  S  L  H  L  S  *  C  L  *  V  V  R  R  F  *  G  E  Q  *  V  L  G  I  A  M  E  R  L  M  R  G  N  Q  R  E  R  L  Q  M  S  C  C  F  P  T  *  I  W  K  I  *  R  H  *  T  V  L  A  R  R  T  E  I  R  T  A  L  S  V  G  Q  R  *  P  V  L  R  A  A  I  M  K  Q  K  V  L  *  K  G  I  M  L  V  S  N  Q  Q  I  *  G  K  E  P  R  G  A  L  M  R  I  L  L  Q  L  H  V  T  L  G  V  F  P  W  I  V  L  L  E  I  F  T  M  A  M  S  H  Q  I  Y  Q  L  L  *  *  C  V  P  V  S  F  H  Q  V  I  Q  E  M  K  V  R  A  S  T  I  L  T  S  E  I  L  N  L  V  K  L  R  *  R  R  L  W  Q  M  K  D  L  L  R  L  Q  F  *  I  P  S  V  L  K   : G  F  W  L  I  V  C  L  L  L  D  P  R  S  E  K  H  V  T  S  Q  N  W  N  T  R  F  K  S  Y  R  Q  K  Q  L  P  Y  P  H  K  L  Q  S  C  R :   K  I  L  L  R  F  Q  A  *  T  V  S  *  N  S  A  S  K  P  W  S  N  R  H  S  L  E  M  :  L  C  M  R  H  *  L  Q  K  S  N  V  *  S  L  L  L  G  N  I  G  R  K  D  G  C  L  I  T  *  H  N  R  H  Q  *  S  I  I  Y  S  R  C  S  V  S  S  L  V  K  C  N  N  Y  L  L  V  K  H  L  R  L  Q  Q  H  L  H  P  P  S  G  R  R  L  K  P  L  R  R  *  R  L  S  L  H  E  A  *  K  F  I  T  S  I  I  G  L  T  C  Y  A  Q  T  V  R  N  *  A  F  R  *  Y  Y  I  H  I  S  F  L  C  V  S  G  Y  N  L  Y  Y  M  *  *  I  I  I  L  F  F  G  N  D  C  I  N  K  L  E  S  N  F  V  V  P  M  F  S  P  </second_frame>
            <third_frame>   H  F  F  S  T  L  L  F  H  I  S  T  S  Y  F  H  F  L  L  Q  I  Q  P  *  S  P  P  F  S  A  G  N  S  P  S  L  Q  N  P  I  F  S  P  I  T  P  P  P  T  T  S  L  S  S  M  F  A  R  L  S  L  I  I  F  N  C  S  S  F  K  F  *  L  *  T  F  R  Y  S  V  F  F  L  A  L  L  F  S  I  L  F  F  I  H  L  L  F  G  V  L  C  L  F  E  L  D  W  V  E  T  V  F  F  L  G  G  F  K  E  F  S  I  *  G  F  A  G  S  *  N  F  D  L  F  N  E  N  C  *  S  S  L  I  I  T  K  K  *  H  L  G  C  R  K  N  *  I  F  C  G  F  Y  L  L  I  F  D  G  S  V  *  F  *  A  T  Y  E  *  S  E  F  W  C  W  S  C  I  S  C  E  V  V  I  S  I  E  Y  F  L  E  *  L  F  A  P  I  E  S  F  S  S  *  *  A  G  D  G  V  G  S  F  *  L  E  R  Y  I  H  G  G  S  R  C  E  F  S  R  C  R  S  C  V  F  V  Y  E  G  W  S  S  S  S  E  G  A  S  S  I  *  *  *  C  S  I  G  I  L  G  Y  D  S  V  F  T  S  V  D  A  Y  K  W  S  E  G  F  R  E  S  S  E  S  W  G  *  Q  W  K  D  *  *  E  E  T  K  G  R  G  Y  R  *  V  V  V  F  L  H  E  F  G  K  Y  R  D  I  E  R  F  W  H  E  G  Q  R  *  G  Q  H  C  Q  W  D  K  G  N  R  F  *  E  Q  Q  *  *  S  R  K  C  Y  E  R  E  *  C  *  Y  P  T  N  K  F  K  G  R  N  Q  E  E  R  *  C  E  Y  C  S  S  C  T  S  L  *  E  S  F  H  G  *  C  Y  W  K  F  S  L  W  R  *  V  T  K  F  T  N  F  S  D  D  A  F  R  S  A  F  T  K  *  F  R  K  *  K  F  E  Q  A  Q  S  *  L  R  K  F  *  I  *  *  S  *  D  E  E  D  Y  G  R  *  K  T  C  *  D  C  S  F  R  S  Q  A  C  *  K  :  D  F  G  *  S  S  V  C  C  S  I  Q  G  A  K  N  T  L  H  L  R  I  G  T  Q  G  S  K  A  T  D  R  N  N  Y  L  I  H  T  S  Y  N  P  A   : E  K  F  C  *  D  F  K  P  E  Q  *  A  E  I  P  H  P  S  H  G  A  T  G  T  A  *  R  C :   S  A  *  G  I  N  C  R  S  P  T  S  K  A  C  C  W  G  T  *  G  G  R  T  V  A  *  *  H  D  T  T  D  T  S  E  A  *  Y  I  P  D  A  A  S  A  A  *  S  N  A  T  I  I  C  W  *  S  I  C  G  F  S  N  T  C  I  R  L  V  G  E  D  *  S  L  *  G  G  E  D  Y  L  Y  M  K  P  K  S  L  L  L  Q  L  S  V  L  H  A  T  H  K  Q  *  E  T  K  L  S  D  S  I  I  F  I  *  V  S  Y  V  C  L  A  T  I  Y  T  I  C  S  E  S  L  F  C  S  L  E  M  T  V  S  I  N  W  S  Q  T  L  W  C  Q  C  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90956" stop="91869"/>
                    <exon start="92014" stop="92146"/>
                    <exon start="92232" stop="92316"/>
                    <exon start="93478" stop="93686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1338</number_coding_nucleotides>
                  <number_encoded_amino_acids>446</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMAQSNSKPPMSSQNFGVGAVSHVRSLSQSSIFSNSCLPPLSPFPPSEPGMVSGHSSLKDISMEEADVNSQGVGVVSSFTRDGLPPRKGHRRSNSDVPLGFSAMIQSSPQLMPISGQKVLGRAVSLGDSNGKIDERKPKGEVTDELLFSYMNLENIETLNGSGTKDRDKDSIVSGTKVTGSESSNNEAESVMKGNNVSIQPTNLREGTKRSADANIAPAARHFRSLSMDSAIGNFHYGDESPNLPTSLMMRSGQLSPSNSGNESSSKHNLDFGNSEFSEAEMKKIMADERLAEIAVLDPKRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNFVEISSLNSELKFRIQAMEQQAQLRDALHEALTAEVQRLKLAAGEHREEGRLPNNMTQQTPVKHNIFQMQRQQPSQMQQLSVGKASAASATPASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90596" stop="90889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHPPQLHFHQCLHVCLSSYSTVAPLNFDYKLSGTPFSSLLCFSQSCFSFICCLGFCVCLNWIGLKQFFFWVGLRSFLFRVLLGAEILIYLMRIAEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92649" e_stop="93417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="92649" e_stop="93417" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92649" stop="93179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92808" stop="93417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGT</gDNA_template>
            <first_frame> R  I  W  E  E  G  N  F  N  G  S  R  E  L  I  I  K  *  I  S  F  V  K  Y  F  Y  V  R  C  K  K  R  R  I  N  *  F  T  M  A  Y  R  A  F  E  R  G  K  *  G  E  K  D  Y  G  L  L  E  G  R  R  G  E  R  W  *  K  S  I  L  D  L  *  R  *  A  K  N  T  L  K  E  A  K  *  E  T  Y  Y  S  C  Q  G  S  L  *  D  K  R  K  I  I  R  D  P  S  S  Q  *  *  L  N  D  M  *  K  *  C  T  I  N  I  S  L  I  T  F  V  W  L  V  G  N  F  K  M  *  A  M  *  K  F  Q  Y  P  S  L  S  T  E  K  P  E  P  D  N  Q  N  I  *  C  T  C  F  S  N  N  I  *  F  *  P  V  T  S  W  P  T  Q  E  A  *  F  S  *  T  V  P  Q  H  Q  Y  L  L  L  K  N  I  I  F  S  K  K  Q  V  C  L  C  L  F  D  Y  L  R  I  H  L  Y  *  S  E  G  R  T  S  Y  T  V  L  V  I  W  I  D  Q  G  Q  C  P  N  H  I  L  Y  S  T  F  K  T  Y  R  Y  A  D  T  M  </first_frame>
            <second_frame>  E  F  G  R  K  G  I  L  M  V  P  V  N  S  *  L  S  R  S  V  S  *  S  T  F  M  *  G  A  K  R  E  E  *  I  S  L  Q  W  H  I  E  P  L  K  G  E  N  R  G  R  R  T  M  A  C  W  K  E  D  G  E  R  D  G  R  N  P  F  *  I  C  E  D  R  R  R  I  L  *  R  K  P  N  R  K  H  T  I  R  V  R  E  A  Y  E  I  N  G  K  *  L  G  T  Q  V  H  N  N  N  S  M  I  C  E  N  D  A  Q  S  I  S  L  *  L  L  L  F  G  W  L  E  I  S  K  C  K  Q  C  E  N  F  N  I  P  H  *  A  L  K  N  P  S  Q  I  T  K  I  F  D  V  P  V  S  V  I  I  F  D  S  N  Q  *  L  A  G  L  L  R  R  H  D  F  L  K  Q  F  H  N  I  S  I  S  Y  *  K  T  L  Y  F  P  K  S  R  F  A  C  V  C  L  I  I  S  G  Y  I  Y  I  N  L  K  E  G  Q  V  I  L  F  *  S  F  G  L  T  R  D  N  V  Q  I  T  F  Y  T  R  H  S  R  H  I  D  M  L  I  L  C </second_frame>
            <third_frame>   N  L  G  G  R  E  F  *  W  F  P  *  T  H  N  *  V  D  Q  F  R  E  V  L  L  C  E  V  Q  K  E  K  N  K  L  V  Y  N  G  I  *  S  L  *  K  G  K  I  G  G  E  G  L  W  P  A  G  R  K  T  G  R  E  M  V  E  I  H  F  R  S  V  K  I  G  E  E  Y  S  E  G  S  Q  I  G  N  I  L  F  V  S  G  K  P  M  R  *  T  E  N  N  *  G  P  K  F  T  I  I  T  Q  *  Y  V  K  M  M  H  N  Q  Y  L  F  D  Y  F  C  L  V  G  W  K  F  Q  N  V  S  N  V  K  I  S  I  S  L  T  E  H  *  K  T  R  A  R  *  P  K  Y  L  M  Y  L  F  Q  *  *  Y  L  I  L  T  S  N  *  L  A  Y  S  G  G  M  I  F  L  N  S  S  T  T  S  V  S  P  I  E  K  H  Y  I  F  Q  K  A  G  L  P  V  F  V  *  L  S  Q  D  T  F  I  L  I  *  R  K  D  K  L  Y  C  S  S  H  L  D  *  P  G  T  M  S  K  S  H  F  I  L  D  I  Q  D  I  *  I  C  *  Y  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="94985" PGL_stop="95277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94985" e_stop="95277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="94985" e_stop="95277" e_length="293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94985" stop="95277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTTTTCCTACTAAAACTTCTTTTGCCGCCGATTACTGACAAATCTCTGTTTTTTTCACTAATTTTTGTGGGTTTTGTGGTACTGACGTTGAGGTTTAGCAAGATCTGATTTTTAAAAACTTTTTTTTTGAATTTTTTGACCGTTGAGTTCGCCGGAGATGTCGGAAGTGGTGGTGGTGAAAGGTGGGGAGTTGTTGTTTTGTGGAAGTACTTGCTGGGATTCTGTTGGTCGCCGGAAAGGTTTGACGGAGGGGAATTTGGTGTCGCCGACGAGGCTTCGTCCGCTTGTTG</gDNA_template>
            <first_frame> D  V  F  L  L  K  L  L  L  P  P  I  T  D  K  S  L  F  F  S  L  I  F  V  G  F  V  V  L  T  L  R  F  S  K  I  *  F  L  K  T  F  F  L  N  F  L  T  V  E  F  A  G  D  V  G  S  G  G  G  E  R  W  G  V  V  V  L  W  K  Y  L  L  G  F  C  W  S  P  E  R  F  D  G  G  E  F  G  V  A  D  E  A  S  S  A  C   </first_frame>
            <second_frame>  M  F  S  Y  *  N  F  F  C  R  R  L  L  T  N  L  C  F  F  H  *  F  L  W  V  L  W  Y  *  R  *  G  L  A  R  S  D  F  *  K  L  F  F  *  I  F  *  P  L  S  S  P  E  M  S  E  V  V  V  V  K  G  G  E  L  L  F  C  G  S  T  C  W  D  S  V  G  R  R  K  G  L  T  E  G  N  L  V  S  P  T  R  L  R  P  L  V  </second_frame>
            <third_frame>   C  F  P  T  K  T  S  F  A  A  D  Y  *  Q  I  S  V  F  F  T  N  F  C  G  F  C  G  T  D  V  E  V  *  Q  D  L  I  F  K  N  F  F  F  E  F  F  D  R  *  V  R  R  R  C  R  K  W  W  W  *  K  V  G  S  C  C  F  V  E  V  L  A  G  I  L  L  V  A  G  K  V  *  R  R  G  I  W  C  R  R  R  G  F  V  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="99031" PGL_stop="103805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99031" e_stop="99042"/>
            <exon e_start="99178" e_stop="99302"/>
            <exon e_start="100337" e_stop="100418"/>
            <exon e_start="100867" e_stop="100989"/>
            <exon e_start="101077" e_stop="101130"/>
            <exon e_start="101218" e_stop="101287"/>
            <exon e_start="101501" e_stop="101534"/>
            <exon e_start="102875" e_stop="103622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.570" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99031" e_stop="99042" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99043" i_stop="99177" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99178" e_stop="99302" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="99303" i_stop="100336" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100337" e_stop="100418" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.928">
            <gDNA_intron_boundary i_start="100419" i_stop="100866" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100867" e_stop="100989" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.954">
            <gDNA_intron_boundary i_start="100990" i_stop="101076" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101077" e_stop="101130" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.570">
            <gDNA_intron_boundary i_start="101131" i_stop="101217" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101218" e_stop="101287" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101288" i_stop="101500" i_length="213"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="101501" e_stop="101534" e_length="34"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101535" i_stop="102874" i_length="1340"/>
          </intron>
          <exon e_serial="8" e_score="0.942">
            <gDNA_exon_boundary e_start="102875" e_stop="103622" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99031" stop="99042"/>
              <exon start="99178" stop="99302"/>
              <exon start="100337" stop="100418"/>
              <exon start="100867" stop="100989"/>
              <exon start="101077" stop="101130"/>
              <exon start="101218" stop="101287"/>
              <exon start="101501" stop="101534"/>
              <exon start="102875" stop="103113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99032" stop="99042"/>
              <exon start="99178" stop="99302"/>
              <exon start="100337" stop="100418"/>
              <exon start="100867" stop="100989"/>
              <exon start="101077" stop="101130"/>
              <exon start="101218" stop="101287"/>
              <exon start="101501" stop="101515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102901" stop="103622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGTTATGGGAG : GCTTGGTCATCGAGAACAGAAGGACGAGTTTGCTCCTCGACGAGTTGATGTTTTTACACGGCAGAATGTCTTGCCTCCAGATGCAATAGTTTCAGCAGGTTCTGCCAGCTCATCATGTACTGCCG : GAGGAGGGCAGCTTTACATGTGGGGAAAAATTAAGAGCACAGGAGATGATTCGATGTATCCCAAACCTCTTCTGGATTTGAG : TGGGTGGAACCTCCGATGTATGGATTCTGGCTATATGCACCACTTTGTTGGTGCTGATTCCTCTTGCATAAGTTGGGGCCTTGCACAGTGTGGGGAGCTGGGTTATGGACCACATGGACAGAA : ATCTTCTGCAGTTCCTAAGAAGGTGGACATTTTAGATGGCATGCATGTTATCAG : TGTTGCTTGTGGATTTGCCCACTCCATGGTTGTTATTGATAGGACAAATGTTGAGGATCGACTTGAGCAG : CTTGATGTATATGATGGCAAGGCTTCTGAGGAAG : TGGGGGCAGAACCTGTGAGTGAATCTCCAGCTTCTAAAAAGACTACCAAAAAGGCATCTGCGAAGGCGCCTGCAAAGTCAAATAAACGGAAGAAGTCAAAAGATGCATCTGAATCTGAAGATGAGGAAGAGGAAAATAGTGATGATGAAAGTGATGACTATGAGGAACAATCGAATGGGCGGGCCAAGTCTTCCGGCAGGGGTCGAGGAAAGGCTGCTGGCAAAGCTACAGCTGCTAAAAAGGGCGCAGGTCGAGGAAGGGGTCGGTCTCCAGCAGCAAACAAAAGCTCCCCACCTGAAGTGAAAGTATCGACAGGTAAAAGGGGAAGGCCGAGGAAATCGTAAGAGTACAGCTTTCCTGGTCAAAATGTAAGGCACTCTCTATATTATGGAATGTATTTTTATTCTCCATTGGCTAATTAGTTGCACTTTAACAAGTAATTAATTTTCGTCATTAACTCCATTCAACATTCTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCTTGTACCTAGTTAAGCTCGTTTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAACCCTATTCTGCCCAGTGTACTCTGATTTCTATTTTTGTTACTAATTTGTGGTGCAACTGAAACACATTTGTTCTGAAAATCTATGCTGATTAGTAATATTGCTGTGTAAATGAAGTATTTATCAGAAT</gDNA_template>
            <first_frame> R  L  W  E  :  A  W  S  S  R  T  E  G  R  V  C  S  S  T  S  *  C  F  Y  T  A  E  C  L  A  S  R  C  N  S  F  S  R  F  C  Q  L  I  M  Y  C  R :   R  R  A  A  L  H  V  G  K  N  *  E  H  R  R  *  F  D  V  S  Q  T  S  S  G  F  E  :  W  V  E  P  P  M  Y  G  F  W  L  Y  A  P  L  C  W  C  *  F  L  L  H  K  L  G  P  C  T  V  W  G  A  G  L  W  T  T  W  T  E  :  I  F  C  S  S  *  E  G  G  H  F  R  W  H  A  C  Y  Q  :  C  C  L  W  I  C  P  L  H  G  C  Y  *  *  D  K  C  *  G  S  T  *  A   : A  *  C  I  *  W  Q  G  F  *  G  S :   G  G  R  T  C  E  *  I  S  S  F  *  K  D  Y  Q  K  G  I  C  E  G  A  C  K  V  K  *  T  E  E  V  K  R  C  I  *  I  *  R  *  G  R  G  K  *  *  *  *  K  *  *  L  *  G  T  I  E  W  A  G  Q  V  F  R  Q  G  S  R  K  G  C  W  Q  S  Y  S  C  *  K  G  R  R  S  R  K  G  S  V  S  S  S  K  Q  K  L  P  T  *  S  E  S  I  D  R  *  K  G  K  A  E  E  I  V  R  V  Q  L  S  W  S  K  C  K  A  L  S  I  L  W  N  V  F  L  F  S  I  G  *  L  V  A  L  *  Q  V  I  N  F  R  H  *  L  H  S  T  F  *  N  L  A  S  V  I  H  L  R  N  L  *  P  V  L  T  *  I  I  D  *  K  D  R  C  L  S  E  L  V  P  S  *  A  R  F  L  D  R  S  G  N  R  G  K  E  R  K  T  L  F  C  P  V  Y  S  D  F  Y  F  C  Y  *  F  V  V  Q  L  K  H  I  C  S  E  N  L  C  *  L  V  I  L  L  C  K  *  S  I  Y  Q  N </first_frame>
            <second_frame>  G  Y  G  R :   L  G  H  R  E  Q  K  D  E  F  A  P  R  R  V  D  V  F  T  R  Q  N  V  L  P  P  D  A  I  V  S  A  G  S  A  S  S  S  C  T  A   : G  G  G  Q  L  Y  M  W  G  K  I  K  S  T  G  D  D  S  M  Y  P  K  P  L  L  D  L  S :   G  W  N  L  R  C  M  D  S  G  Y  M  H  H  F  V  G  A  D  S  S  C  I  S  W  G  L  A  Q  C  G  E  L  G  Y  G  P  H  G  Q  K :   S  S  A  V  P  K  K  V  D  I  L  D  G  M  H  V  I  S :   V  A  C  G  F  A  H  S  M  V  V  I  D  R  T  N  V  E  D  R  L  E  Q  :  L  D  V  Y  D  G  K  A  S  E  E   : V  G  A  E  P  V  S  E  S  P  A  S  K  K  T  T  K  K  A  S  A  K  A  P  A  K  S  N  K  R  K  K  S  K  D  A  S  E  S  E  D  E  E  E  E  N  S  D  D  E  S  D  D  Y  E  E  Q  S  N  G  R  A  K  S  S  G  R  G  R  G  K  A  A  G  K  A  T  A  A  K  K  G  A  G  R  G  R  G  R  S  P  A  A  N  K  S  S  P  P  E  V  K  V  S  T  G  K  R  G  R  P  R  K  S  *  E  Y  S  F  P  G  Q  N  V  R  H  S  L  Y  Y  G  M  Y  F  Y  S  P  L  A  N  *  L  H  F  N  K  *  L  I  F  V  I  N  S  I  Q  H  S  E  I  *  Q  V  *  S  I  C  V  T  C  N  P  Y  *  H  R  S  L  T  E  K  T  G  V  Y  P  S  L  Y  L  V  K  L  V  F  W  I  G  A  E  T  G  E  K  K  G  K  P  Y  S  A  Q  C  T  L  I  S  I  F  V  T  N  L  W  C  N  *  N  T  F  V  L  K  I  Y  A  D  *  *  Y  C  C  V  N  E  V  F  I  R   </second_frame>
            <third_frame>   V  M  G   : G  L  V  I  E  N  R  R  T  S  L  L  L  D  E  L  M  F  L  H  G  R  M  S  C  L  Q  M  Q  *  F  Q  Q  V  L  P  A  H  H  V  L  P  :  E  E  G  S  F  T  C  G  E  K  L  R  A  Q  E  M  I  R  C  I  P  N  L  F  W  I  *   : V  G  G  T  S  D  V  W  I  L  A  I  C  T  T  L  L  V  L  I  P  L  A  *  V  G  A  L  H  S  V  G  S  W  V  M  D  H  M  D  R   : N  L  L  Q  F  L  R  R  W  T  F  *  M  A  C  M  L  S   : V  L  L  V  D  L  P  T  P  W  L  L  L  I  G  Q  M  L  R  I  D  L  S  S :   L  M  Y  M  M  A  R  L  L  R  K  :  W  G  Q  N  L  *  V  N  L  Q  L  L  K  R  L  P  K  R  H  L  R  R  R  L  Q  S  Q  I  N  G  R  S  Q  K  M  H  L  N  L  K  M  R  K  R  K  I  V  M  M  K  V  M  T  M  R  N  N  R  M  G  G  P  S  L  P  A  G  V  E  E  R  L  L  A  K  L  Q  L  L  K  R  A  Q  V  E  E  G  V  G  L  Q  Q  Q  T  K  A  P  H  L  K  *  K  Y  R  Q  V  K  G  E  G  R  G  N  R  K  S  T  A  F  L  V  K  M  *  G  T  L  Y  I  M  E  C  I  F  I  L  H  W  L  I  S  C  T  L  T  S  N  *  F  S  S  L  T  P  F  N  I  L  K  F  S  K  C  N  P  F  A  *  L  V  T  R  I  D  I  D  H  *  L  K  R  Q  V  F  I  R  A  C  T  *  L  S  S  F  F  G  *  E  R  K  Q  G  K  R  K  E  N  P  I  L  P  S  V  L  *  F  L  F  L  L  L  I  C  G  A  T  E  T  H  L  F  *  K  S  M  L  I  S  N  I  A  V  *  M  K  Y  L  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99032" stop="99042"/>
                    <exon start="99178" stop="99302"/>
                    <exon start="100337" stop="100418"/>
                    <exon start="100867" stop="100989"/>
                    <exon start="101077" stop="101130"/>
                    <exon start="101218" stop="101287"/>
                    <exon start="101501" stop="101534"/>
                    <exon start="102875" stop="103218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYGRLGHREQKDEFAPRRVDVFTRQNVLPPDAIVSAGSASSSCTAGGGQLYMWGKIKSTGDDSMYPKPLLDLSGWNLRCMDSGYMHHFVGADSSCISWGLAQCGELGYGPHGQKSSAVPKKVDILDGMHVISVACGFAHSMVVIDRTNVEDRLEQLDVYDGKASEEVGAEPVSESPASKKTTKKASAKAPAKSNKRKKSKDASESEDEEEENSDDESDDYEEQSNGRAKSSGRGRGKAAGKATAAKKGAGRGRGRSPAANKSSPPEVKVSTGKRGRPRKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103164" e_stop="103508"/>
            <exon e_start="103784" e_stop="103805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.407" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.591"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103164" e_stop="103508" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.407" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103509" i_stop="103783" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="0.591">
            <gDNA_exon_boundary e_start="103784" e_stop="103805" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103164" stop="103508"/>
              <exon start="103784" stop="103805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCTGAAGTGAAAGTATCGACAGGTAAAAGGGGAAGGCCGAGGAAATCGTAAGAGTACAGCTTTCCTGGTCAAAATGTAAGGCACTCTCTATATTATGGAATGTATTTTTATTCTCCATTGGCTAATTAGTTGCACTTTAACAAGTAATTAATTTTCGTCATTAACTCCATTCAACATTCTGAAATTTAGCAAGTGTAATCCATTTGCGTAACTTGTAACCCGTATTGACATAGATCATTGACTGAAAAGACAGGTGTTTATCCGAGCTTGTACCTAGTTAAGCTCGTTTTTTGGATAGGAGCGGAAACAGGGGAAAAGAAAGGAAAACCCTATTCTGCCCA : CTAAAAGAACCAGAAAACAGAA</gDNA_template>
            <first_frame> P  T  *  S  E  S  I  D  R  *  K  G  K  A  E  E  I  V  R  V  Q  L  S  W  S  K  C  K  A  L  S  I  L  W  N  V  F  L  F  S  I  G  *  L  V  A  L  *  Q  V  I  N  F  R  H  *  L  H  S  T  F  *  N  L  A  S  V  I  H  L  R  N  L  *  P  V  L  T  *  I  I  D  *  K  D  R  C  L  S  E  L  V  P  S  *  A  R  F  L  D  R  S  G  N  R  G  K  E  R  K  T  L  F  C  P  :  L  K  E  P  E  N  R  </first_frame>
            <second_frame>  P  P  E  V  K  V  S  T  G  K  R  G  R  P  R  K  S  *  E  Y  S  F  P  G  Q  N  V  R  H  S  L  Y  Y  G  M  Y  F  Y  S  P  L  A  N  *  L  H  F  N  K  *  L  I  F  V  I  N  S  I  Q  H  S  E  I  *  Q  V  *  S  I  C  V  T  C  N  P  Y  *  H  R  S  L  T  E  K  T  G  V  Y  P  S  L  Y  L  V  K  L  V  F  W  I  G  A  E  T  G  E  K  K  G  K  P  Y  S  A  H :   *  K  N  Q  K  T  E </second_frame>
            <third_frame>   H  L  K  *  K  Y  R  Q  V  K  G  E  G  R  G  N  R  K  S  T  A  F  L  V  K  M  *  G  T  L  Y  I  M  E  C  I  F  I  L  H  W  L  I  S  C  T  L  T  S  N  *  F  S  S  L  T  P  F  N  I  L  K  F  S  K  C  N  P  F  A  *  L  V  T  R  I  D  I  D  H  *  L  K  R  Q  V  F  I  R  A  C  T  *  L  S  S  F  F  G  *  E  R  K  Q  G  K  R  K  E  N  P  I  L  P   : T  K  R  T  R  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0111P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="109193" PGL_stop="111909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109193" e_stop="109521"/>
            <exon e_start="111130" e_stop="111735"/>
            <exon e_start="111841" e_stop="111909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="109193" e_stop="109521" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="109522" i_stop="111129" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111130" e_stop="111735" e_length="606"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111736" i_stop="111840" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111841" e_stop="111909" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109193" stop="109521"/>
              <exon start="111130" stop="111518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109194" stop="109521"/>
              <exon start="111130" stop="111360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109407" stop="109521"/>
              <exon start="111130" stop="111735"/>
              <exon start="111841" stop="111893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109418" stop="109521"/>
              <exon start="111130" stop="111463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109427" stop="109521"/>
              <exon start="111130" stop="111686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109427" stop="109521"/>
              <exon start="111130" stop="111685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109429" stop="109521"/>
              <exon start="111130" stop="111735"/>
              <exon start="111841" stop="111882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109482" stop="109521"/>
              <exon start="111130" stop="111735"/>
              <exon start="111841" stop="111909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTGGGACCTGTAAAAAAAAGAAAAACTGAAGCCACGGAACTCAAAATACAAAATTTAGCTAGATTTTAGGAGAGTGTTTCAAGTCCGTCTTCTTTATTTTTTTTATTTTTTTTTTTACTTTTAATTTTTTTAATTTTTATTATCAGCTCATGAGGTACAATTTCCAACAAATATAGAATATCTACTACAACACTTAACAAGATTGGTCAATCAGTGAGTGAAAGAAGAAGAAGAAAATGGGAAAATCTACAGCTTCTTCTTGCTTAAAGATCATTGCTTGTGGCAGTGATTCTGTTGACCGTGATGAACTTGAAGCTCATCCTGAG : AGTAAAAGCTCAAGTGATAAACGTGGATGGAGTTTCCGCAAGAAATCTACCAGGCATCGTGTATTAAGCAATTCAGTAGTTTCAGAAACACCATCTGGGAACAAGGACTGGCCAGAAGCTGCTAATGCCAATCTGCAAACACAATCTAACTCTACCATTCCAGAGAAGGCATCTGTCGTCCAATGGGCAGATGAGAAACCCCAGTTTTCAACGGTCGAGAAGTCCCAGGTCTCGGCAGACGAGAAGCCCCAGATCCTGGAGGATGAGACGCCCCTAGTCTCTGTGGATAAGAAGCCCCAGGTCTCAGCGGATGAGAAGCCCCGTGTCTCCACAGACGCGAAGCCCCAGCTCTCGGTGGAGGTCTCAGTGGATGAAAAGCCCTTGATATCCGAAGAAGAGAAGCTCGAGGTCTCCGAAGATGAGAAGCCCAACATCTCTATAGATGAGAAGCCTCCTATCTCATCAGAAGAGAAATCCCTGGTCTCAGACTTGGTGGATGCAAAACAATCAGAGTCAGTAATAATAGCTGGATTTAATGATGCTAAAGCTGATGTCATTCCGGATGAACACGCTCTTGTTATTCAGACTGCAGTCAGAGCATTTCTG : GCACGAAGAGCTCAATTAAAGCAAAAGCATATAACTAAATTGCAAGCTGCTGTACGTGGACACTTAGTT</gDNA_template>
            <first_frame> L  L  G  P  V  K  K  R  K  T  E  A  T  E  L  K  I  Q  N  L  A  R  F  *  E  S  V  S  S  P  S  S  L  F  F  L  F  F  F  L  L  L  I  F  L  I  F  I  I  S  S  *  G  T  I  S  N  K  Y  R  I  S  T  T  T  L  N  K  I  G  Q  S  V  S  E  R  R  R  R  K  W  E  N  L  Q  L  L  L  A  *  R  S  L  L  V  A  V  I  L  L  T  V  M  N  L  K  L  I  L  R :   V  K  A  Q  V  I  N  V  D  G  V  S  A  R  N  L  P  G  I  V  Y  *  A  I  Q  *  F  Q  K  H  H  L  G  T  R  T  G  Q  K  L  L  M  P  I  C  K  H  N  L  T  L  P  F  Q  R  R  H  L  S  S  N  G  Q  M  R  N  P  S  F  Q  R  S  R  S  P  R  S  R  Q  T  R  S  P  R  S  W  R  M  R  R  P  *  S  L  W  I  R  S  P  R  S  Q  R  M  R  S  P  V  S  P  Q  T  R  S  P  S  S  R  W  R  S  Q  W  M  K  S  P  *  Y  P  K  K  R  S  S  R  S  P  K  M  R  S  P  T  S  L  *  M  R  S  L  L  S  H  Q  K  R  N  P  W  S  Q  T  W  W  M  Q  N  N  Q  S  Q  *  *  *  L  D  L  M  M  L  K  L  M  S  F  R  M  N  T  L  L  L  F  R  L  Q  S  E  H  F  W :   H  E  E  L  N  *  S  K  S  I  *  L  N  C  K  L  L  Y  V  D  T  *   </first_frame>
            <second_frame>  Y  W  D  L  *  K  K  E  K  L  K  P  R  N  S  K  Y  K  I  *  L  D  F  R  R  V  F  Q  V  R  L  L  Y  F  F  Y  F  F  F  Y  F  *  F  F  *  F  L  L  S  A  H  E  V  Q  F  P  T  N  I  E  Y  L  L  Q  H  L  T  R  L  V  N  Q  *  V  K  E  E  E  E  N  G  K  I  Y  S  F  F  L  L  K  D  H  C  L  W  Q  *  F  C  *  P  *  *  T  *  S  S  S  *   : E  *  K  L  K  *  *  T  W  M  E  F  P  Q  E  I  Y  Q  A  S  C  I  K  Q  F  S  S  F  R  N  T  I  W  E  Q  G  L  A  R  S  C  *  C  Q  S  A  N  T  I  *  L  Y  H  S  R  E  G  I  C  R  P  M  G  R  *  E  T  P  V  F  N  G  R  E  V  P  G  L  G  R  R  E  A  P  D  P  G  G  *  D  A  P  S  L  C  G  *  E  A  P  G  L  S  G  *  E  A  P  C  L  H  R  R  E  A  P  A  L  G  G  G  L  S  G  *  K  A  L  D  I  R  R  R  E  A  R  G  L  R  R  *  E  A  Q  H  L  Y  R  *  E  A  S  Y  L  I  R  R  E  I  P  G  L  R  L  G  G  C  K  T  I  R  V  S  N  N  S  W  I  *  *  C  *  S  *  C  H  S  G  *  T  R  S  C  Y  S  D  C  S  Q  S  I  S   : G  T  K  S  S  I  K  A  K  A  Y  N  *  I  A  S  C  C  T  W  T  L  S  </second_frame>
            <third_frame>   T  G  T  C  K  K  K  K  N  *  S  H  G  T  Q  N  T  K  F  S  *  I  L  G  E  C  F  K  S  V  F  F  I  F  F  I  F  F  F  T  F  N  F  F  N  F  Y  Y  Q  L  M  R  Y  N  F  Q  Q  I  *  N  I  Y  Y  N  T  *  Q  D  W  S  I  S  E  *  K  K  K  K  K  M  G  K  S  T  A  S  S  C  L  K  I  I  A  C  G  S  D  S  V  D  R  D  E  L  E  A  H  P  E  :  S  K  S  S  S  D  K  R  G  W  S  F  R  K  K  S  T  R  H  R  V  L  S  N  S  V  V  S  E  T  P  S  G  N  K  D  W  P  E  A  A  N  A  N  L  Q  T  Q  S  N  S  T  I  P  E  K  A  S  V  V  Q  W  A  D  E  K  P  Q  F  S  T  V  E  K  S  Q  V  S  A  D  E  K  P  Q  I  L  E  D  E  T  P  L  V  S  V  D  K  K  P  Q  V  S  A  D  E  K  P  R  V  S  T  D  A  K  P  Q  L  S  V  E  V  S  V  D  E  K  P  L  I  S  E  E  E  K  L  E  V  S  E  D  E  K  P  N  I  S  I  D  E  K  P  P  I  S  S  E  E  K  S  L  V  S  D  L  V  D  A  K  Q  S  E  S  V  I  I  A  G  F  N  D  A  K  A  D  V  I  P  D  E  H  A  L  V  I  Q  T  A  V  R  A  F  L  :  A  R  R  A  Q  L  K  Q  K  H  I  T  K  L  Q  A  A  V  R  G  H  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109417" stop="109521"/>
                    <exon start="111130" stop="111735"/>
                    <exon start="111841" stop="111909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKKMGKSTASSCLKIIACGSDSVDRDELEAHPESKSSSDKRGWSFRKKSTRHRVLSNSVVSETPSGNKDWPEAANANLQTQSNSTIPEKASVVQWADEKPQFSTVEKSQVSADEKPQILEDETPLVSVDKKPQVSADEKPRVSTDAKPQLSVEVSVDEKPLISEEEKLEVSEDEKPNISIDEKPPISSEEKSLVSDLVDAKQSESVIIAGFNDAKADVIPDEHALVIQTAVRAFLARRAQLKQKHITKLQAAVRGHLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="111983" PGL_stop="112793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111983" e_stop="112029"/>
            <exon e_start="112199" e_stop="112279"/>
            <exon e_start="112386" e_stop="112793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.413" e_score="0.975"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="111983" e_stop="112029" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112030" i_stop="112198" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="112199" e_stop="112279" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.413">
            <gDNA_intron_boundary i_start="112280" i_stop="112385" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="112386" e_stop="112793" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111983" stop="112029"/>
              <exon start="112199" stop="112279"/>
              <exon start="112386" stop="112793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACTAATCGCATTGCAGAAGAATCTAGTATCAAGGAGAAGCTAAAA : GGAAAAGAGAACTCAGGAACAAAATCAGAGTTCACATACATTTCAATTTCAAAGCTACTGAGCAATAGCTTCGCTCAACAG : CTCCTTGAATCAACTCCAAGGACCAAAAGTATAAATATTAAGTGTGACCCTTCCAAATCTGATTCTGCCTGGAAATGGTTAGAGAGATGGATGTCTGTTGCATCACCAGGAAATCAACCGTCACCACAATCAGAATTATCTGCCGATCAGCAGGAGAATGAACCTATCGAGCACCCCAGTAACCTTATTGAAAATGAAGTTCAGCTTGATTCCGAGTCAATGGACTTCAGACAGGGCGAGGAGGCATCCTTGTCTGCAGTGCCATCTGAAAGTGATGATAATTTGATCACTTATGATGCAGACAGCTTAGATTTTCAAGCCAACATACCCTTTTCGCCTCCTCAGCCTCAGAATGTTGATGAAAAAACTTCAAGAGATGACACTTTCTGTTCTATTCCTACTCAACAT</gDNA_template>
            <first_frame> T  L  I  A  L  Q  K  N  L  V  S  R  R  S  *  K :   E  K  R  T  Q  E  Q  N  Q  S  S  H  T  F  Q  F  Q  S  Y  *  A  I  A  S  L  N  S :   S  L  N  Q  L  Q  G  P  K  V  *  I  L  S  V  T  L  P  N  L  I  L  P  G  N  G  *  R  D  G  C  L  L  H  H  Q  E  I  N  R  H  H  N  Q  N  Y  L  P  I  S  R  R  M  N  L  S  S  T  P  V  T  L  L  K  M  K  F  S  L  I  P  S  Q  W  T  S  D  R  A  R  R  H  P  C  L  Q  C  H  L  K  V  M  I  I  *  S  L  M  M  Q  T  A  *  I  F  K  P  T  Y  P  F  R  L  L  S  L  R  M  L  M  K  K  L  Q  E  M  T  L  S  V  L  F  L  L  N   </first_frame>
            <second_frame>  H  *  S  H  C  R  R  I  *  Y  Q  G  E  A  K   : R  K  R  E  L  R  N  K  I  R  V  H  I  H  F  N  F  K  A  T  E  Q  *  L  R  S  T   : A  P  *  I  N  S  K  D  Q  K  Y  K  Y  *  V  *  P  F  Q  I  *  F  C  L  E  M  V  R  E  M  D  V  C  C  I  T  R  K  S  T  V  T  T  I  R  I  I  C  R  S  A  G  E  *  T  Y  R  A  P  Q  *  P  Y  *  K  *  S  S  A  *  F  R  V  N  G  L  Q  T  G  R  G  G  I  L  V  C  S  A  I  *  K  *  *  *  F  D  H  L  *  C  R  Q  L  R  F  S  S  Q  H  T  L  F  A  S  S  A  S  E  C  *  *  K  N  F  K  R  *  H  F  L  F  Y  S  Y  S  T  </second_frame>
            <third_frame>   T  N  R  I  A  E  E  S  S  I  K  E  K  L  K  :  G  K  E  N  S  G  T  K  S  E  F  T  Y  I  S  I  S  K  L  L  S  N  S  F  A  Q  Q  :  L  L  E  S  T  P  R  T  K  S  I  N  I  K  C  D  P  S  K  S  D  S  A  W  K  W  L  E  R  W  M  S  V  A  S  P  G  N  Q  P  S  P  Q  S  E  L  S  A  D  Q  Q  E  N  E  P  I  E  H  P  S  N  L  I  E  N  E  V  Q  L  D  S  E  S  M  D  F  R  Q  G  E  E  A  S  L  S  A  V  P  S  E  S  D  D  N  L  I  T  Y  D  A  D  S  L  D  F  Q  A  N  I  P  F  S  P  P  Q  P  Q  N  V  D  E  K  T  S  R  D  D  T  F  C  S  I  P  T  Q  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111985" stop="112029"/>
                    <exon start="112199" stop="112279"/>
                    <exon start="112386" stop="112793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNRIAEESSIKEKLKGKENSGTKSEFTYISISKLLSNSFAQQLLESTPRTKSINIKCDPSKSDSAWKWLERWMSVASPGNQPSPQSELSADQQENEPIEHPSNLIENEVQLDSESMDFRQGEEASLSAVPSESDDNLITYDADSLDFQANIPFSPPQPQNVDEKTSRDDTFCSIPTQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="112848" PGL_stop="113363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112848" e_stop="113363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112848" e_stop="113363" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112848" stop="113363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTTGAGAGAGAGGATACACATTCCCTGGAACTTTCAGAGACTGAGAGCAAAAAGATTTTACATGGATCAAGGAAGGCAAGTAATCCTGCATTTATTGCTGCTCAGACAAAGTTTGAGGAACTCACTTTGGCAGCTAAATCAACCAAAGATTCTAGTTTGCCCAATCATAAAACAGAAGATGAATCTAGTGAAGATACGTTTTCAACTATCACTAATCATTCATTTGGGGCAAGGGATGCTGCTCCATCAGAAAATTCTGTTCCTCACAGTACAAGAGCTCAAGTTGGTGGTTCAGAATGTGGCACGGAGCTTTCTATTTCTTCTACCCTGGATTCACCAGATAGGTCTGAAGTCGGAGGTCATGTATTTGAGCAGGAACTTCCTTCCAATGGTGGCACTGACCATCATAAGAGCAATGGATACCCTCACATTGAAGATGATAGTACAAATGACTTATCACACTCCGACTATGTTCAGGCAGGGAGAGAGGATCCTACTGATGATGCTAAGCAT</gDNA_template>
            <first_frame> E  V  E  R  E  D  T  H  S  L  E  L  S  E  T  E  S  K  K  I  L  H  G  S  R  K  A  S  N  P  A  F  I  A  A  Q  T  K  F  E  E  L  T  L  A  A  K  S  T  K  D  S  S  L  P  N  H  K  T  E  D  E  S  S  E  D  T  F  S  T  I  T  N  H  S  F  G  A  R  D  A  A  P  S  E  N  S  V  P  H  S  T  R  A  Q  V  G  G  S  E  C  G  T  E  L  S  I  S  S  T  L  D  S  P  D  R  S  E  V  G  G  H  V  F  E  Q  E  L  P  S  N  G  G  T  D  H  H  K  S  N  G  Y  P  H  I  E  D  D  S  T  N  D  L  S  H  S  D  Y  V  Q  A  G  R  E  D  P  T  D  D  A  K  H </first_frame>
            <second_frame>  K  L  R  E  R  I  H  I  P  W  N  F  Q  R  L  R  A  K  R  F  Y  M  D  Q  G  R  Q  V  I  L  H  L  L  L  L  R  Q  S  L  R  N  S  L  W  Q  L  N  Q  P  K  I  L  V  C  P  I  I  K  Q  K  M  N  L  V  K  I  R  F  Q  L  S  L  I  I  H  L  G  Q  G  M  L  L  H  Q  K  I  L  F  L  T  V  Q  E  L  K  L  V  V  Q  N  V  A  R  S  F  L  F  L  L  P  W  I  H  Q  I  G  L  K  S  E  V  M  Y  L  S  R  N  F  L  P  M  V  A  L  T  I  I  R  A  M  D  T  L  T  L  K  M  I  V  Q  M  T  Y  H  T  P  T  M  F  R  Q  G  E  R  I  L  L  M  M  L  S   </second_frame>
            <third_frame>   S  *  E  R  G  Y  T  F  P  G  T  F  R  D  *  E  Q  K  D  F  T  W  I  K  E  G  K  *  S  C  I  Y  C  C  S  D  K  V  *  G  T  H  F  G  S  *  I  N  Q  R  F  *  F  A  Q  S  *  N  R  R  *  I  *  *  R  Y  V  F  N  Y  H  *  S  F  I  W  G  K  G  C  C  S  I  R  K  F  C  S  S  Q  Y  K  S  S  S  W  W  F  R  M  W  H  G  A  F  Y  F  F  Y  P  G  F  T  R  *  V  *  S  R  R  S  C  I  *  A  G  T  S  F  Q  W  W  H  *  P  S  *  E  Q  W  I  P  S  H  *  R  *  *  Y  K  *  L  I  T  L  R  L  C  S  G  R  E  R  G  S  Y  *  *  C  *  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112848" stop="113363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVEREDTHSLELSETESKKILHGSRKASNPAFIAAQTKFEELTLAAKSTKDSSLPNHKTEDESSEDTFSTITNHSFGARDAAPSENSVPHSTRAQVGGSECGTELSISSTLDSPDRSEVGGHVFEQELPSNGGTDHHKSNGYPHIEDDSTNDLSHSDYVQAGREDPTDDAKH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112849" stop="113361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRERIHIPWNFQRLRAKRFYMDQGRQVILHLLLLRQSLRNSLWQLNQPKILVCPIIKQKMNLVKIRFQLSLIIHLGQGMLLHQKILFLTVQELKLVVQNVARSFLFLLPWIHQIGLKSEVMYLSRNFLPMVALTIIRAMDTLTLKMIVQMTYHTPTMFRQGERILLMMLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="113431" PGL_stop="114750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113431" e_stop="113988"/>
            <exon e_start="114680" e_stop="114750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113431" e_stop="113988" e_length="558"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113989" i_stop="114679" i_length="691"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114680" e_stop="114750" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113431" stop="113988"/>
              <exon start="114680" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113431" stop="113988"/>
              <exon start="114680" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113432" stop="113980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAATAGAGCAAGAAGCTAGGACGGATCGGCTAGACAAGTCATCACCAGACGCATCTCCAAGGAGCCATATAACTGTCCCTGAATCCCAAGGGACACCTTCTAGTCAAGTGTCCGTGAATCCTAAGAAGATAAGAAGTGAAAAAAGTGGATCGATTCCCAAGCGCCGCTCTGCACCTGCTGGCAAAAAGTCTCCTTCAAAGTTAAACCATGCTCCAGGTACAACTAGTTCGGAACAATTATCTAAGGATCATAAAAATGAGAAGCGACGAAACTCGTTTGGTTCAACAAAAGCTGGACTAGCTGATCAGGAGGCTAGAGATAACAGTACTAGCAGTTCTCTCCCAAGTTACATGCAAGCAACAGAATCTGCAAGAGCCAAAGCTATCCCAAATAGCTCCCCAAGATCTAGTCCAGATGTCCACAATAAAGATGAATACATCAAAAAGAGACATTCACTCCCTGGTTCAAATGGTAGGCAAGGTTCACCTCGTATCCAGCGGTCTCTGTCTAATGCACAGCAGGGTGCAAAGGGAAATGGAACTCAATCTCCACAAG : AGAGGAAATGGCAGAGATGAGTAGAGCTCTGTGGCTTATTGGCAATTCCTTTGGGTGCTTGACATCTGTTC</gDNA_template>
            <first_frame> F  K  *  S  K  K  L  G  R  I  G  *  T  S  H  H  Q  T  H  L  Q  G  A  I  *  L  S  L  N  P  K  G  H  L  L  V  K  C  P  *  I  L  R  R  *  E  V  K  K  V  D  R  F  P  S  A  A  L  H  L  L  A  K  S  L  L  Q  S  *  T  M  L  Q  V  Q  L  V  R  N  N  Y  L  R  I  I  K  M  R  S  D  E  T  R  L  V  Q  Q  K  L  D  *  L  I  R  R  L  E  I  T  V  L  A  V  L  S  Q  V  T  C  K  Q  Q  N  L  Q  E  P  K  L  S  Q  I  A  P  Q  D  L  V  Q  M  S  T  I  K  M  N  T  S  K  R  D  I  H  S  L  V  Q  M  V  G  K  V  H  L  V  S  S  G  L  C  L  M  H  S  R  V  Q  R  E  M  E  L  N  L  H  K  :  R  G  N  G  R  D  E  *  S  S  V  A  Y  W  Q  F  L  W  V  L  D  I  C   </first_frame>
            <second_frame>  S  N  R  A  R  S  *  D  G  S  A  R  Q  V  I  T  R  R  I  S  K  E  P  Y  N  C  P  *  I  P  R  D  T  F  *  S  S  V  R  E  S  *  E  D  K  K  *  K  K  W  I  D  S  Q  A  P  L  C  T  C  W  Q  K  V  S  F  K  V  K  P  C  S  R  Y  N  *  F  G  T  I  I  *  G  S  *  K  *  E  A  T  K  L  V  W  F  N  K  S  W  T  S  *  S  G  G  *  R  *  Q  Y  *  Q  F  S  P  K  L  H  A  S  N  R  I  C  K  S  Q  S  Y  P  K  *  L  P  K  I  *  S  R  C  P  Q  *  R  *  I  H  Q  K  E  T  F  T  P  W  F  K  W  *  A  R  F  T  S  Y  P  A  V  S  V  *  C  T  A  G  C  K  G  K  W  N  S  I  S  T  R :   E  E  M  A  E  M  S  R  A  L  W  L  I  G  N  S  F  G  C  L  T  S  V  </second_frame>
            <third_frame>   Q  I  E  Q  E  A  R  T  D  R  L  D  K  S  S  P  D  A  S  P  R  S  H  I  T  V  P  E  S  Q  G  T  P  S  S  Q  V  S  V  N  P  K  K  I  R  S  E  K  S  G  S  I  P  K  R  R  S  A  P  A  G  K  K  S  P  S  K  L  N  H  A  P  G  T  T  S  S  E  Q  L  S  K  D  H  K  N  E  K  R  R  N  S  F  G  S  T  K  A  G  L  A  D  Q  E  A  R  D  N  S  T  S  S  S  L  P  S  Y  M  Q  A  T  E  S  A  R  A  K  A  I  P  N  S  S  P  R  S  S  P  D  V  H  N  K  D  E  Y  I  K  K  R  H  S  L  P  G  S  N  G  R  Q  G  S  P  R  I  Q  R  S  L  S  N  A  Q  Q  G  A  K  G  N  G  T  Q  S  P  Q   : E  R  K  W  Q  R  *  V  E  L  C  G  L  L  A  I  P  L  G  A  *  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113433" stop="113988"/>
                    <exon start="114680" stop="114699"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIEQEARTDRLDKSSPDASPRSHITVPESQGTPSSQVSVNPKKIRSEKSGSIPKRRSAPAGKKSPSKLNHAPGTTSSEQLSKDHKNEKRRNSFGSTKAGLADQEARDNSTSSSLPSYMQATESARAKAIPNSSPRSSPDVHNKDEYIKKRHSLPGSNGRQGSPRIQRSLSNAQQGAKGNGTQSPQERKWQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="115688" PGL_stop="118561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115688" e_stop="116055"/>
            <exon e_start="118264" e_stop="118561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="115688" e_stop="116055" e_length="368"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116056" i_stop="118263" i_length="2208"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="118264" e_stop="118561" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115688" stop="116055"/>
              <exon start="118264" stop="118561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115689" stop="116055"/>
              <exon start="118264" stop="118561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115928" stop="116055"/>
              <exon start="118264" stop="118541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115929" stop="116055"/>
              <exon start="118264" stop="118541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAGAGAAAATGTTGAAATTCTTGTCAAAAGTGAAAATCGAATTCAATGCCTTAGATCCACGAATAGCTTCATGTATGGAATTTTTGGCTCAATGTAATGCTCCTAAAGCCAAAGAATCAAACCCAAGTTGCCAAATTCAGGTCAAGCGCCGCACTGATGACCATCCACCGCAAATCTCTGTCACTTTCGTCAATGGAGTCGAGCAGACCTATGATGCTACTTCTACACCCGCACAGAACATCCGTACTATGATTCTTGAAAAGGGTCAGTACCTTGAGACTGAACAGATGTTTCGTGAAGCTGGTGAGAAATGGCCTGTTATTATTCCTGATGAAGAGCTTAAACAACCATTTCTTGGAATAAAG : CCAAAGAAAGCAGAAGAGAAGAAGCAATAGTCGAAGCTACTCACACCTAGCTTCTCATCGGGGCATTTTTTCAGCGTTAGATCAGCTATATGACATTCCAGAGAGATGAGTCTTCAACTAGGGGCAAAGCTAGTTTTTTGTGGCATTTATGTTAACAAGAACATTATATTTGTACTAGATGATGAATTTGCTATCCTTTTGTATTGTGAGACTTTGAAATGTCTTCCCAATCCTCATTTCTCCAATCCTTGCAAAAGAATAAAATTCCCTTCCAAAACGTTTGATCTCATTTTGGAAT</gDNA_template>
            <first_frame> Q  K  R  K  C  *  N  S  C  Q  K  *  K  S  N  S  M  P  *  I  H  E  *  L  H  V  W  N  F  W  L  N  V  M  L  L  K  P  K  N  Q  T  Q  V  A  K  F  R  S  S  A  A  L  M  T  I  H  R  K  S  L  S  L  S  S  M  E  S  S  R  P  M  M  L  L  L  H  P  H  R  T  S  V  L  *  F  L  K  R  V  S  T  L  R  L  N  R  C  F  V  K  L  V  R  N  G  L  L  L  F  L  M  K  S  L  N  N  H  F  L  E  *  S :   Q  R  K  Q  K  R  R  S  N  S  R  S  Y  S  H  L  A  S  H  R  G  I  F  S  A  L  D  Q  L  Y  D  I  P  E  R  *  V  F  N  *  G  Q  S  *  F  F  V  A  F  M  L  T  R  T  L  Y  L  Y  *  M  M  N  L  L  S  F  C  I  V  R  L  *  N  V  F  P  I  L  I  S  P  I  L  A  K  E  *  N  S  L  P  K  R  L  I  S  F  W  N </first_frame>
            <second_frame>  K  R  E  N  V  E  I  L  V  K  S  E  N  R  I  Q  C  L  R  S  T  N  S  F  M  Y  G  I  F  G  S  M  *  C  S  *  S  Q  R  I  K  P  K  L  P  N  S  G  Q  A  P  H  *  *  P  S  T  A  N  L  C  H  F  R  Q  W  S  R  A  D  L  *  C  Y  F  Y  T  R  T  E  H  P  Y  Y  D  S  *  K  G  S  V  P  *  D  *  T  D  V  S  *  S  W  *  E  M  A  C  Y  Y  S  *  *  R  A  *  T  T  I  S  W  N  K   : A  K  E  S  R  R  E  E  A  I  V  E  A  T  H  T  *  L  L  I  G  A  F  F  Q  R  *  I  S  Y  M  T  F  Q  R  D  E  S  S  T  R  G  K  A  S  F  L  W  H  L  C  *  Q  E  H  Y  I  C  T  R  *  *  I  C  Y  P  F  V  L  *  D  F  E  M  S  S  Q  S  S  F  L  Q  S  L  Q  K  N  K  I  P  F  Q  N  V  *  S  H  F  G   </second_frame>
            <third_frame>   K  E  K  M  L  K  F  L  S  K  V  K  I  E  F  N  A  L  D  P  R  I  A  S  C  M  E  F  L  A  Q  C  N  A  P  K  A  K  E  S  N  P  S  C  Q  I  Q  V  K  R  R  T  D  D  H  P  P  Q  I  S  V  T  F  V  N  G  V  E  Q  T  Y  D  A  T  S  T  P  A  Q  N  I  R  T  M  I  L  E  K  G  Q  Y  L  E  T  E  Q  M  F  R  E  A  G  E  K  W  P  V  I  I  P  D  E  E  L  K  Q  P  F  L  G  I  K  :  P  K  K  A  E  E  K  K  Q  *  S  K  L  L  T  P  S  F  S  S  G  H  F  F  S  V  R  S  A  I  *  H  S  R  E  M  S  L  Q  L  G  A  K  L  V  F  C  G  I  Y  V  N  K  N  I  I  F  V  L  D  D  E  F  A  I  L  L  Y  C  E  T  L  K  C  L  P  N  P  H  F  S  N  P  C  K  R  I  K  F  P  S  K  T  F  D  L  I  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115690" stop="116055"/>
                    <exon start="118264" stop="118293"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEKMLKFLSKVKIEFNALDPRIASCMEFLAQCNAPKAKESNPSCQIQVKRRTDDHPPQISVTFVNGVEQTYDATSTPAQNIRTMILEKGQYLETEQMFREAGEKWPVIIPDEELKQPFLGIKPKKAEEKKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118357" stop="118560"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSREMSLQLGAKLVFCGIYVNKNIIFVLDDEFAILLYCETLKCLPNPHFSNPCKRIKFPSKTFDLILE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="120055" PGL_stop="118863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120055" e_stop="120029"/>
            <exon e_start="119951" e_stop="119755"/>
            <exon e_start="119314" e_stop="119189"/>
            <exon e_start="119096" e_stop="118863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.429" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120055" e_stop="120029" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.429" acc_prob="0.835">
            <gDNA_intron_boundary i_start="120028" i_stop="119952" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119951" e_stop="119755" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.981">
            <gDNA_intron_boundary i_start="119754" i_stop="119315" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119314" e_stop="119189" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="119188" i_stop="119097" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="119096" e_stop="118863" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120055" stop="120029"/>
              <exon start="119951" stop="119755"/>
              <exon start="119314" stop="119189"/>
              <exon start="119096" stop="118863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTTTTTCATGTATTCACACCTTCAG : GAAAGGAGAAAAACTTTGTTTACAGCCATTTGCATGGAACCGTTAAATATGAAGCTCATCCAAAGCCTGTCGGACTTGCTTTTGGAGGATCCTCTGGCAATGAAAGAATATTTGTAGATGAAGATTTTGCTAAAGTTATAGTTCGTCATCATGCTTGTGACAAAACTTACCATCATGGTCCTCTTTACCCTGACCAG : GGGTTCTTACCGGTTGAAGCTCTGATTATGGACGTGGAGGTATTGGGATTGGGAGGAAAAAGGGCTAGAGATATTCAGTCATCGTACAAAAAGAGGGAAGAACTCTTTACTGAGCAAAGACGAAAG : GTTGACTTGAAAACATTTGGAAATTGGGAAGATTCCCCCGAGAAAATGATGATGGATATGGTTTCTGACCCTAACAGAGTTCGTAGAGAAGATCGATGAGTTGATTCTTCCCTAGAAGAGATTTCACACGATCCAGGACTTCTATCTTAATGTATATATAAGGAGATGTTGGAGTTTTATGTGCTACTACACTTTGAATAAGATTTGTATGTTTGGCTATATAAGTCTGTATTT</gDNA_template>
            <first_frame> Q  F  F  M  Y  S  H  L  Q  :  E  R  R  K  T  L  F  T  A  I  C  M  E  P  L  N  M  K  L  I  Q  S  L  S  D  L  L  L  E  D  P  L  A  M  K  E  Y  L  *  M  K  I  L  L  K  L  *  F  V  I  M  L  V  T  K  L  T  I  M  V  L  F  T  L  T  R :   G  S  Y  R  L  K  L  *  L  W  T  W  R  Y  W  D  W  E  E  K  G  L  E  I  F  S  H  R  T  K  R  G  K  N  S  L  L  S  K  D  E  R :   L  T  *  K  H  L  E  I  G  K  I  P  P  R  K  *  *  W  I  W  F  L  T  L  T  E  F  V  E  K  I  D  E  L  I  L  P  *  K  R  F  H  T  I  Q  D  F  Y  L  N  V  Y  I  R  R  C  W  S  F  M  C  Y  Y  T  L  N  K  I  C  M  F  G  Y  I  S  L  Y   </first_frame>
            <second_frame>  S  F  S  C  I  H  T  F  R :   K  G  E  K  L  C  L  Q  P  F  A  W  N  R  *  I  *  S  S  S  K  A  C  R  T  C  F  W  R  I  L  W  Q  *  K  N  I  C  R  *  R  F  C  *  S  Y  S  S  S  S  C  L  *  Q  N  L  P  S  W  S  S  L  P  *  P   : G  V  L  T  G  *  S  S  D  Y  G  R  G  G  I  G  I  G  R  K  K  G  *  R  Y  S  V  I  V  Q  K  E  G  R  T  L  Y  *  A  K  T  K   : G  *  L  E  N  I  W  K  L  G  R  F  P  R  E  N  D  D  G  Y  G  F  *  P  *  Q  S  S  *  R  R  S  M  S  *  F  F  P  R  R  D  F  T  R  S  R  T  S  I  L  M  Y  I  *  G  D  V  G  V  L  C  A  T  T  L  *  I  R  F  V  C  L  A  I  *  V  C  I  </second_frame>
            <third_frame>   V  F  H  V  F  T  P  S   : G  K  E  K  N  F  V  Y  S  H  L  H  G  T  V  K  Y  E  A  H  P  K  P  V  G  L  A  F  G  G  S  S  G  N  E  R  I  F  V  D  E  D  F  A  K  V  I  V  R  H  H  A  C  D  K  T  Y  H  H  G  P  L  Y  P  D  Q  :  G  F  L  P  V  E  A  L  I  M  D  V  E  V  L  G  L  G  G  K  R  A  R  D  I  Q  S  S  Y  K  K  R  E  E  L  F  T  E  Q  R  R  K  :  V  D  L  K  T  F  G  N  W  E  D  S  P  E  K  M  M  M  D  M  V  S  D  P  N  R  V  R  R  E  D  R  *  V  D  S  S  L  E  E  I  S  H  D  P  G  L  L  S  *  C  I  Y  K  E  M  L  E  F  Y  V  L  L  H  F  E  *  D  L  Y  V  W  L  Y  K  S  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120053" stop="120029"/>
                    <exon start="119951" stop="119755"/>
                    <exon start="119314" stop="119189"/>
                    <exon start="119096" stop="118998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFHVFTPSGKEKNFVYSHLHGTVKYEAHPKPVGLAFGGSSGNERIFVDEDFAKVIVRHHACDKTYHHGPLYPDQGFLPVEALIMDVEVLGLGGKRARDIQSSYKKREELFTEQRRKVDLKTFGNWEDSPEKMMMDMVSDPNRVRREDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="125863" PGL_stop="122935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125863" e_stop="125304"/>
            <exon e_start="125004" e_stop="124814"/>
            <exon e_start="124655" e_stop="124226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.990"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125863" e_stop="125304" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="125004" e_stop="124814" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="124655" e_stop="124226" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125863" stop="125304"/>
              <exon start="125004" stop="124887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125608" stop="125304"/>
              <exon start="125004" stop="124814"/>
              <exon start="124655" stop="124275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125576" stop="125304"/>
              <exon start="125004" stop="124814"/>
              <exon start="124655" stop="124226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125514" stop="125304"/>
              <exon start="125004" stop="124814"/>
              <exon start="124655" stop="124324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGTCGACCTCCACTTTGACAAAGCATGATAATTCTTTTATGTTGCCTGATACAATTGGTCATGGATTAGCTCCAATAGGCCAGGATTTGTGGGATCATCAGTTGAATGATGTTAAGTGCTTTTCCCAGACAAACCTTCAGGTTCCACTAGACATAACTAACATGCAGTTCCTACCTGATTCTTATGGTTTTAAGGACCTGTCAGAGGAGAGCCATAACCAAAGTGATATATATAGCTGTCTTAACTTTGATAGTAACAGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG : ATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGA : GGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTCCACATATTAGAGTTGTTTTCAGCTGCATCTTGTTTGTCTTACAAGGCTGTTTCTTAATGGAGAAAGTTGCTATGACTTGGAAATGAAAGTACAATATC</gDNA_template>
            <first_frame> L  C  R  P  P  L  *  Q  S  M  I  I  L  L  C  C  L  I  Q  L  V  M  D  *  L  Q  *  A  R  I  C  G  I  I  S  *  M  M  L  S  A  F  P  R  Q  T  F  R  F  H  *  T  *  L  T  C  S  S  Y  L  I  L  M  V  L  R  T  C  Q  R  R  A  I  T  K  V  I  Y  I  A  V  L  T  L  I  V  T  A  G  A  Q  *  L  I  I  L  F  R  A  Q  C  *  M  S  S  A  I  *  S  I  L  I  S  R  I  L  Q  I  F  Y  *  A  T  S  V  L  V  K  M  F  N  L  K  L  H  Q  P  V  W  Q  I  L  R  I  S  L  Y  K  N  L  L  T  T  R  V  V  H  H  Q  A  M  *  I  L  M  N  A  I  F  C  R  I  A  H  G  S  K  L  L  H  V  C  G  H  I  Q  R :   F  K  R  Q  D  L  *  E  D  Q  L  M  S  L  V  S  K  I  M  K  S  C  G  L  K  L  K  E  C  L  D  L  R  G  F  *  M  T  L  E  A  R  A  G  S  W  Y  M  W  I  L  R  M  M  S  S  L  L  G  M  I  L  G   : R  N  L  L  D  V  F  D  A  S  E  F  Y  R  L  L  K  S  S  K  W  E  R  K  E  C  S  Y  *  T  L  L  D  C  K  A  S  M  D  Q  H  Q  N  S  Q  T  K  L  N  T  S  D  L  *  E  L  T  V  I  D  H  *  S  C  M  E  Q  H  A  N  V  M  L  L  N  N  L  T  R  R  *  F  T  R  F  L  L  *  *  C  C  N  L  *  V  L  M  T  L  *  E  N  S  F  S  I  L  N  Y  A  F  H  I  L  E  L  F  S  A  A  S  C  L  S  Y  K  A  V  S  *  W  R  K  L  L  *  L  G  N  E  S  T  I   </first_frame>
            <second_frame>  C  V  D  L  H  F  D  K  A  *  *  F  F  Y  V  A  *  Y  N  W  S  W  I  S  S  N  R  P  G  F  V  G  S  S  V  E  *  C  *  V  L  F  P  D  K  P  S  G  S  T  R  H  N  *  H  A  V  P  T  *  F  L  W  F  *  G  P  V  R  G  E  P  *  P  K  *  Y  I  *  L  S  *  L  *  *  *  Q  R  E  H  S  D  *  *  F  C  F  E  H  S  V  R  *  V  L  Q  F  E  A  Y  *  F  P  E  S  F  R  F  S  I  R  Q  H  Q  F  *  S  R  C  S  I  S  N  Y  I  S  Q  S  G  R  F  S  E  F  L  C  T  R  I  C  *  Q  L  G  W  C  I  I  K  Q  C  K  F  *  *  M  Q  S  F  A  E  *  L  M  A  A  S  C  S  T  C  A  D  I  Y  K   : D  S  K  D  R  I  C  R  K  I  N  *  C  L  W  F  Q  K  L  *  R  A  A  V  *  N  *  K  N  V  W  T  *  G  A  S  E  *  H  S  R  L  E  L  E  V  G  I  C  G  F  *  E  *  C  P  P  C  W  G  *  S  L  G  :  G  I  C  W  M  C  S  M  H  Q  N  F  I  A  Y  *  S  P  A  N  G  R  G  R  N  A  A  T  E  L  C  W  T  A  K  H  Q  W  I  N  I  R  I  P  K  L  S  S  I  Q  V  I  Y  E  S  S  Q  *  L  I  T  R  V  A  W  S  N  M  Q  M  *  C  C  *  T  T  *  Q  E  D  D  S  L  G  F  C  Y  S  S  V  V  I  Y  E  C  *  *  L  C  K  K  T  A  L  A  Y  *  T  M  P  S  T  Y  *  S  C  F  Q  L  H  L  V  C  L  T  R  L  F  L  N  G  E  S  C  Y  D  L  E  M  K  V  Q  Y  </second_frame>
            <third_frame>   V  S  T  S  T  L  T  K  H  D  N  S  F  M  L  P  D  T  I  G  H  G  L  A  P  I  G  Q  D  L  W  D  H  Q  L  N  D  V  K  C  F  S  Q  T  N  L  Q  V  P  L  D  I  T  N  M  Q  F  L  P  D  S  Y  G  F  K  D  L  S  E  E  S  H  N  Q  S  D  I  Y  S  C  L  N  F  D  S  N  S  G  S  T  V  I  D  N  S  V  S  S  T  V  L  D  E  F  C  N  L  K  H  T  D  F  Q  N  P  S  D  F  L  L  G  N  I  S  S  S  Q  D  V  Q  S  Q  I  T  S  A  S  L  A  D  S  Q  N  F  S  V  Q  E  F  A  D  N  S  G  G  A  S  S  S  N  V  N  F  D  E  C  N  L  L  Q  N  S  S  W  Q  Q  V  A  P  R  V  R  T  Y  T  K  :  I  Q  K  T  G  S  V  G  R  S  I  D  V  S  G  F  K  N  Y  E  E  L  R  S  E  I  E  R  M  F  G  L  E  G  L  L  N  D  T  R  G  S  S  W  K  L  V  Y  V  D  F  E  N  D  V  L  L  V  G  D  D  P  W  E :   E  F  V  G  C  V  R  C  I  R  I  L  S  P  T  E  V  Q  Q  M  G  E  E  G  M  Q  L  L  N  S  A  G  L  Q  S  I  N  G  S  T  S  E  F  P  N  *  A  Q  Y  K  *  S  M  R  A  H  S  D  *  S  L  E  L  H  G  A  T  C  K  C  N  V  V  E  Q  L  N  K  K  M  I  H  *  V  S  V  I  V  V  L  *  F  M  S  V  D  D  S  V  R  K  Q  L  *  H  I  K  L  C  L  P  H  I  R  V  V  F  S  C  I  L  F  V  L  Q  G  C  F  L  M  E  K  V  A  M  T  W  K  *  K  Y  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125861" stop="125304"/>
                    <exon start="125004" stop="124814"/>
                    <exon start="124655" stop="124517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSTSTLTKHDNSFMLPDTIGHGLAPIGQDLWDHQLNDVKCFSQTNLQVPLDITNMQFLPDSYGFKDLSEESHNQSDIYSCLNFDSNSGSTVIDNSVSSTVLDEFCNLKHTDFQNPSDFLLGNISSSQDVQSQITSASLADSQNFSVQEFADNSGGASSSNVNFDECNLLQNSSWQQVAPRVRTYTKIQKTGSVGRSIDVSGFKNYEELRSEIERMFGLEGLLNDTRGSSWKLVYVDFENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMGEEGMQLLNSAGLQSINGSTSEFPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123883" e_stop="123657"/>
            <exon e_start="123229" e_stop="122935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123883" e_stop="123657" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123656" i_stop="123230" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123229" e_stop="122935" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123883" stop="123657"/>
              <exon start="123229" stop="123001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123883" stop="123657"/>
              <exon start="123229" stop="123058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123875" stop="123657"/>
              <exon start="123229" stop="122935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACTTCCAATCTTCCACCGACGACAACCGGCAAAAGGGAAAATCTGTCTATCAGACTTCAGTTAAGCTTGAAATGGGTCAATCTTCATCGGCCGAGCAAGTGTCGCCGGAGCAACGGGAAGCAGAATCTGTAGCTGCTTCAACTGGAGCTCTTCCTAATCTTAAGAAAGCTTTCTCTGTTCTTTCTGATCCTCAAACTCACTCCATCTCCATTCATTCCCTTCAA : AAATGTTTTGGGTTCTCTATTGATGGATCAACAAACGAAGAGTCTGTAGTGCCAAAGGAATTTCCAGTTTTGATGAGTAATTTGAGTTCTTCAATAGTTGACTTGTTTTTCTTGTCTGAAAAGGGAGGTATCAGCTGGGTTGAGTTTCTAAAGGGCCATATAAAGTGTTCTGGAAGGACAGTTAGTTCAGCTTCACTTAATAGTTTGTTGAGGTTATTTGGGATGGTATCTGTTAAGGCAGGTCTTCCAGAAAAACTACAGATCGTTTCCGATGAGGATGATTGTAAAATCAGCG</gDNA_template>
            <first_frame> *  T  S  N  L  P  P  T  T  T  G  K  R  E  N  L  S  I  R  L  Q  L  S  L  K  W  V  N  L  H  R  P  S  K  C  R  R  S  N  G  K  Q  N  L  *  L  L  Q  L  E  L  F  L  I  L  R  K  L  S  L  F  F  L  I  L  K  L  T  P  S  P  F  I  P  F  K :   N  V  L  G  S  L  L  M  D  Q  Q  T  K  S  L  *  C  Q  R  N  F  Q  F  *  *  V  I  *  V  L  Q  *  L  T  C  F  S  C  L  K  R  E  V  S  A  G  L  S  F  *  R  A  I  *  S  V  L  E  G  Q  L  V  Q  L  H  L  I  V  C  *  G  Y  L  G  W  Y  L  L  R  Q  V  F  Q  K  N  Y  R  S  F  P  M  R  M  I  V  K  S  A </first_frame>
            <second_frame>  E  L  P  I  F  H  R  R  Q  P  A  K  G  K  I  C  L  S  D  F  S  *  A  *  N  G  S  I  F  I  G  R  A  S  V  A  G  A  T  G  S  R  I  C  S  C  F  N  W  S  S  S  *  S  *  E  S  F  L  C  S  F  *  S  S  N  S  L  H  L  H  S  F  P  S   : K  M  F  W  V  L  Y  *  W  I  N  K  R  R  V  C  S  A  K  G  I  S  S  F  D  E  *  F  E  F  F  N  S  *  L  V  F  L  V  *  K  G  R  Y  Q  L  G  *  V  S  K  G  P  Y  K  V  F  W  K  D  S  *  F  S  F  T  *  *  F  V  E  V  I  W  D  G  I  C  *  G  R  S  S  R  K  T  T  D  R  F  R  *  G  *  L  *  N  Q   </second_frame>
            <third_frame>   N  F  Q  S  S  T  D  D  N  R  Q  K  G  K  S  V  Y  Q  T  S  V  K  L  E  M  G  Q  S  S  S  A  E  Q  V  S  P  E  Q  R  E  A  E  S  V  A  A  S  T  G  A  L  P  N  L  K  K  A  F  S  V  L  S  D  P  Q  T  H  S  I  S  I  H  S  L  Q  :  K  C  F  G  F  S  I  D  G  S  T  N  E  E  S  V  V  P  K  E  F  P  V  L  M  S  N  L  S  S  S  I  V  D  L  F  F  L  S  E  K  G  G  I  S  W  V  E  F  L  K  G  H  I  K  C  S  G  R  T  V  S  S  A  S  L  N  S  L  L  R  L  F  G  M  V  S  V  K  A  G  L  P  E  K  L  Q  I  V  S  D  E  D  D  C  K  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123881" stop="123657"/>
                    <exon start="123229" stop="122936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFQSSTDDNRQKGKSVYQTSVKLEMGQSSSAEQVSPEQREAESVAASTGALPNLKKAFSVLSDPQTHSISIHSLQKCFGFSIDGSTNEESVVPKEFPVLMSNLSSSIVDLFFLSEKGGISWVEFLKGHIKCSGRTVSSASLNSLLRLFGMVSVKAGLPEKLQIVSDEDDCKIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="125863" e_stop="125304"/>
            <exon e_start="125004" e_stop="124814"/>
            <exon e_start="124655" e_stop="124313"/>
            <exon e_start="123436" e_stop="123420"/>
            <exon e_start="123229" e_stop="123221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.191" e_score="0.985"/>
          <exon-intron don_prob="0.151" acc_prob="0.998" e_score="0.529"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125863" e_stop="125304" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125303" i_stop="125005" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="125004" e_stop="124814" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="124813" i_stop="124656" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124655" e_stop="124313" e_length="343"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.191">
            <gDNA_intron_boundary i_start="124312" i_stop="123437" i_length="876"/>
          </intron>
          <exon e_serial="4" e_score="0.529">
            <gDNA_exon_boundary e_start="123436" e_stop="123420" e_length="17"/>
          </exon>
          <intron i_serial="4" don_prob="0.151" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123419" i_stop="123230" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="123229" e_stop="123221" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125863" stop="125304"/>
              <exon start="125004" stop="124887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125514" stop="125304"/>
              <exon start="125004" stop="124814"/>
              <exon start="124655" stop="124324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124926" stop="124814"/>
              <exon start="124655" stop="124313"/>
              <exon start="123436" stop="123420"/>
              <exon start="123229" stop="123221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321112" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTGTCGACCTCCACTTTGACAAAGCATGATAATTCTTTTATGTTGCCTGATACAATTGGTCATGGATTAGCTCCAATAGGCCAGGATTTGTGGGATCATCAGTTGAATGATGTTAAGTGCTTTTCCCAGACAAACCTTCAGGTTCCACTAGACATAACTAACATGCAGTTCCTACCTGATTCTTATGGTTTTAAGGACCTGTCAGAGGAGAGCCATAACCAAAGTGATATATATAGCTGTCTTAACTTTGATAGTAACAGCGGGAGCACAGTGATTGATAATTCTGTTTCGAGCACAGTGTTAGATGAGTTCTGCAATTTGAAGCATACTGATTTCCAGAATCCTTCAGATTTTCTATTAGGCAACATCAGTTCTAGTCAAGATGTTCAATCTCAAATTACATCAGCCAGTCTGGCAGATTCTCAGAATTTCTCTGTACAAGAATTTGCTGACAACTCGGGTGGTGCATCATCAAGCAATGTAAATTTTGATGAATGCAATCTTTTGCAGAATAGCTCATGGCAGCAAGTTGCTCCACGTGTGCGGACATATACAAAG : ATTCAAAAGACAGGATCTGTAGGAAGATCAATTGATGTCTCTGGTTTCAAAAATTATGAAGAGCTGCGGTCTGAAATTGAAAGAATGTTTGGACTTGAGGGGCTTCTGAATGACACTCGAGGCTCGAGCTGGAAGTTGGTATATGTGGATTTTGAGAATGATGTCCTCCTTGTTGGGGATGATCCTTGGGA : GGAATTTGTTGGATGTGTTCGATGCATCAGAATTTTATCGCCTACTGAAGTCCAGCAAATGGGAGAGGAAGGAATGCAGCTACTGAACTCTGCTGGACTGCAAAGCATCAATGGATCAACATCAGAATTCCCAAACTAAGCTCAATACAAGTGATCTATGAGAGCTCACAGTGATTGATCACTAGAGTTGCATGGAGCAACATGCAAATGTAATGTTGTTGAACAACTTAACAAGAAGATGATTCACTAGGTTTCTGTTATAGTAGTGTTGTAATTTATGAGTGTTGATGACTCTGTAAGAAAACAGCTTTAGCATATTAAACTATGCCTTCCACATATTAGA : TAAAAACTGGAATCTAG : AAATGTTTT</gDNA_template>
            <first_frame> L  C  R  P  P  L  *  Q  S  M  I  I  L  L  C  C  L  I  Q  L  V  M  D  *  L  Q  *  A  R  I  C  G  I  I  S  *  M  M  L  S  A  F  P  R  Q  T  F  R  F  H  *  T  *  L  T  C  S  S  Y  L  I  L  M  V  L  R  T  C  Q  R  R  A  I  T  K  V  I  Y  I  A  V  L  T  L  I  V  T  A  G  A  Q  *  L  I  I  L  F  R  A  Q  C  *  M  S  S  A  I  *  S  I  L  I  S  R  I  L  Q  I  F  Y  *  A  T  S  V  L  V  K  M  F  N  L  K  L  H  Q  P  V  W  Q  I  L  R  I  S  L  Y  K  N  L  L  T  T  R  V  V  H  H  Q  A  M  *  I  L  M  N  A  I  F  C  R  I  A  H  G  S  K  L  L  H  V  C  G  H  I  Q  R :   F  K  R  Q  D  L  *  E  D  Q  L  M  S  L  V  S  K  I  M  K  S  C  G  L  K  L  K  E  C  L  D  L  R  G  F  *  M  T  L  E  A  R  A  G  S  W  Y  M  W  I  L  R  M  M  S  S  L  L  G  M  I  L  G   : R  N  L  L  D  V  F  D  A  S  E  F  Y  R  L  L  K  S  S  K  W  E  R  K  E  C  S  Y  *  T  L  L  D  C  K  A  S  M  D  Q  H  Q  N  S  Q  T  K  L  N  T  S  D  L  *  E  L  T  V  I  D  H  *  S  C  M  E  Q  H  A  N  V  M  L  L  N  N  L  T  R  R  *  F  T  R  F  L  L  *  *  C  C  N  L  *  V  L  M  T  L  *  E  N  S  F  S  I  L  N  Y  A  F  H  I  L  D :   K  N  W  N  L   : E  M  F  </first_frame>
            <second_frame>  C  V  D  L  H  F  D  K  A  *  *  F  F  Y  V  A  *  Y  N  W  S  W  I  S  S  N  R  P  G  F  V  G  S  S  V  E  *  C  *  V  L  F  P  D  K  P  S  G  S  T  R  H  N  *  H  A  V  P  T  *  F  L  W  F  *  G  P  V  R  G  E  P  *  P  K  *  Y  I  *  L  S  *  L  *  *  *  Q  R  E  H  S  D  *  *  F  C  F  E  H  S  V  R  *  V  L  Q  F  E  A  Y  *  F  P  E  S  F  R  F  S  I  R  Q  H  Q  F  *  S  R  C  S  I  S  N  Y  I  S  Q  S  G  R  F  S  E  F  L  C  T  R  I  C  *  Q  L  G  W  C  I  I  K  Q  C  K  F  *  *  M  Q  S  F  A  E  *  L  M  A  A  S  C  S  T  C  A  D  I  Y  K   : D  S  K  D  R  I  C  R  K  I  N  *  C  L  W  F  Q  K  L  *  R  A  A  V  *  N  *  K  N  V  W  T  *  G  A  S  E  *  H  S  R  L  E  L  E  V  G  I  C  G  F  *  E  *  C  P  P  C  W  G  *  S  L  G  :  G  I  C  W  M  C  S  M  H  Q  N  F  I  A  Y  *  S  P  A  N  G  R  G  R  N  A  A  T  E  L  C  W  T  A  K  H  Q  W  I  N  I  R  I  P  K  L  S  S  I  Q  V  I  Y  E  S  S  Q  *  L  I  T  R  V  A  W  S  N  M  Q  M  *  C  C  *  T  T  *  Q  E  D  D  S  L  G  F  C  Y  S  S  V  V  I  Y  E  C  *  *  L  C  K  K  T  A  L  A  Y  *  T  M  P  S  T  Y  *   : I  K  T  G  I  *  :  K  C  F </second_frame>
            <third_frame>   V  S  T  S  T  L  T  K  H  D  N  S  F  M  L  P  D  T  I  G  H  G  L  A  P  I  G  Q  D  L  W  D  H  Q  L  N  D  V  K  C  F  S  Q  T  N  L  Q  V  P  L  D  I  T  N  M  Q  F  L  P  D  S  Y  G  F  K  D  L  S  E  E  S  H  N  Q  S  D  I  Y  S  C  L  N  F  D  S  N  S  G  S  T  V  I  D  N  S  V  S  S  T  V  L  D  E  F  C  N  L  K  H  T  D  F  Q  N  P  S  D  F  L  L  G  N  I  S  S  S  Q  D  V  Q  S  Q  I  T  S  A  S  L  A  D  S  Q  N  F  S  V  Q  E  F  A  D  N  S  G  G  A  S  S  S  N  V  N  F  D  E  C  N  L  L  Q  N  S  S  W  Q  Q  V  A  P  R  V  R  T  Y  T  K  :  I  Q  K  T  G  S  V  G  R  S  I  D  V  S  G  F  K  N  Y  E  E  L  R  S  E  I  E  R  M  F  G  L  E  G  L  L  N  D  T  R  G  S  S  W  K  L  V  Y  V  D  F  E  N  D  V  L  L  V  G  D  D  P  W  E :   E  F  V  G  C  V  R  C  I  R  I  L  S  P  T  E  V  Q  Q  M  G  E  E  G  M  Q  L  L  N  S  A  G  L  Q  S  I  N  G  S  T  S  E  F  P  N  *  A  Q  Y  K  *  S  M  R  A  H  S  D  *  S  L  E  L  H  G  A  T  C  K  C  N  V  V  E  Q  L  N  K  K  M  I  H  *  V  S  V  I  V  V  L  *  F  M  S  V  D  D  S  V  R  K  Q  L  *  H  I  K  L  C  L  P  H  I  R  :  *  K  L  E  S  R :   N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0111P03.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125861" stop="125304"/>
                    <exon start="125004" stop="124814"/>
                    <exon start="124655" stop="124517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSTSTLTKHDNSFMLPDTIGHGLAPIGQDLWDHQLNDVKCFSQTNLQVPLDITNMQFLPDSYGFKDLSEESHNQSDIYSCLNFDSNSGSTVIDNSVSSTVLDEFCNLKHTDFQNPSDFLLGNISSSQDVQSQITSASLADSQNFSVQEFADNSGGASSSNVNFDECNLLQNSSWQQVAPRVRTYTKIQKTGSVGRSIDVSGFKNYEELRSEIERMFGLEGLLNDTRGSSWKLVYVDFENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMGEEGMQLLNSAGLQSINGSTSEFPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 244 chains have been computed
$ 
$ memory statistics:
$ 640368 bytes spliced alignments in total
$ 128 spliced alignments have been stored
$ 5002 bytes was the average size of a spliced alignment
$ 35464 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1541 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 263 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:30:18
-->
